Multiple sequence alignment - TraesCS2D01G599600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G599600 chr2D 100.000 4318 0 0 1 4318 650864372 650860055 0.000000e+00 7974.0
1 TraesCS2D01G599600 chr2D 98.925 93 1 0 2892 2984 547844633 547844725 2.670000e-37 167.0
2 TraesCS2D01G599600 chr2D 86.806 144 16 2 1 143 340511498 340511639 1.610000e-34 158.0
3 TraesCS2D01G599600 chr2D 100.000 37 0 0 139 175 73567804 73567768 7.750000e-08 69.4
4 TraesCS2D01G599600 chr2D 100.000 37 0 0 139 175 364921218 364921182 7.750000e-08 69.4
5 TraesCS2D01G599600 chr2D 97.500 40 0 1 140 178 576197657 576197618 2.790000e-07 67.6
6 TraesCS2D01G599600 chr2D 92.308 39 2 1 3748 3786 161111890 161111927 2.000000e-03 54.7
7 TraesCS2D01G599600 chr2A 92.205 2553 133 31 383 2898 777285767 777288290 0.000000e+00 3552.0
8 TraesCS2D01G599600 chr2A 92.318 781 41 7 2977 3757 777288286 777289047 0.000000e+00 1092.0
9 TraesCS2D01G599600 chr2A 91.444 187 11 3 4047 4229 777289387 777289572 7.170000e-63 252.0
10 TraesCS2D01G599600 chr2A 97.143 35 1 0 4016 4050 678362908 678362874 4.660000e-05 60.2
11 TraesCS2D01G599600 chr2B 88.625 2022 160 39 1 1980 779858706 779856713 0.000000e+00 2396.0
12 TraesCS2D01G599600 chr2B 95.913 832 30 3 2069 2898 779856357 779855528 0.000000e+00 1345.0
13 TraesCS2D01G599600 chr2B 94.268 785 35 4 2977 3760 779855532 779854757 0.000000e+00 1192.0
14 TraesCS2D01G599600 chr2B 88.636 308 27 6 1774 2077 779856682 779856379 6.820000e-98 368.0
15 TraesCS2D01G599600 chr2B 93.284 134 7 1 4096 4227 779853958 779853825 3.410000e-46 196.0
16 TraesCS2D01G599600 chr2B 93.103 116 5 3 2891 3004 402387297 402387411 2.670000e-37 167.0
17 TraesCS2D01G599600 chr2B 88.148 135 12 2 1 135 560893409 560893539 1.610000e-34 158.0
18 TraesCS2D01G599600 chr2B 93.878 98 5 1 4006 4103 779854469 779854373 3.480000e-31 147.0
19 TraesCS2D01G599600 chr2B 94.595 74 4 0 4229 4302 779853784 779853711 9.810000e-22 115.0
20 TraesCS2D01G599600 chr2B 85.455 110 8 4 3850 3959 290680390 290680289 1.640000e-19 108.0
21 TraesCS2D01G599600 chr2B 86.765 68 9 0 3850 3917 190977901 190977968 4.630000e-10 76.8
22 TraesCS2D01G599600 chr2B 94.872 39 2 0 4016 4054 150610986 150611024 1.300000e-05 62.1
23 TraesCS2D01G599600 chr7B 87.862 725 62 14 767 1471 332556635 332557353 0.000000e+00 828.0
24 TraesCS2D01G599600 chr7B 83.505 97 10 2 3846 3942 506376158 506376068 7.690000e-13 86.1
25 TraesCS2D01G599600 chr7B 86.301 73 4 6 3926 3998 610460695 610460761 1.670000e-09 75.0
26 TraesCS2D01G599600 chr6B 89.362 141 11 2 1 141 650598565 650598701 1.600000e-39 174.0
27 TraesCS2D01G599600 chr6B 86.525 141 16 1 3 143 256326168 256326305 7.480000e-33 152.0
28 TraesCS2D01G599600 chr6B 79.845 129 13 9 3833 3959 347546412 347546295 9.950000e-12 82.4
29 TraesCS2D01G599600 chr6B 100.000 36 0 0 140 175 445013937 445013902 2.790000e-07 67.6
30 TraesCS2D01G599600 chr6B 96.970 33 0 1 3755 3786 120675789 120675757 2.000000e-03 54.7
31 TraesCS2D01G599600 chr5D 97.980 99 1 1 2890 2987 475004942 475004844 2.060000e-38 171.0
32 TraesCS2D01G599600 chr5D 96.970 99 2 1 2893 2990 229934128 229934226 9.610000e-37 165.0
33 TraesCS2D01G599600 chr5D 91.228 57 1 1 140 196 254833975 254833923 1.670000e-09 75.0
34 TraesCS2D01G599600 chr5D 100.000 37 0 0 140 176 350413523 350413487 7.750000e-08 69.4
35 TraesCS2D01G599600 chr5D 95.000 40 2 0 4016 4055 506087720 506087681 3.600000e-06 63.9
36 TraesCS2D01G599600 chr3A 100.000 91 0 0 2892 2982 685700890 685700800 7.430000e-38 169.0
37 TraesCS2D01G599600 chr3A 86.014 143 17 1 1 143 739325038 739325177 2.690000e-32 150.0
38 TraesCS2D01G599600 chr3A 83.810 105 11 3 3856 3960 738133164 738133066 1.280000e-15 95.3
39 TraesCS2D01G599600 chr4B 95.283 106 4 1 2879 2984 403270793 403270689 2.670000e-37 167.0
40 TraesCS2D01G599600 chr4B 89.706 68 7 0 3850 3917 144758040 144758107 2.140000e-13 87.9
41 TraesCS2D01G599600 chr1B 97.917 96 0 2 2895 2989 654313575 654313669 9.610000e-37 165.0
42 TraesCS2D01G599600 chr1B 84.932 73 3 5 3926 3998 180349239 180349175 2.790000e-07 67.6
43 TraesCS2D01G599600 chr1A 96.907 97 3 0 2888 2984 313905944 313905848 3.460000e-36 163.0
44 TraesCS2D01G599600 chr7A 94.231 104 4 2 2887 2990 425782372 425782271 1.610000e-34 158.0
45 TraesCS2D01G599600 chr5B 87.234 141 15 1 4 144 149590531 149590394 1.610000e-34 158.0
46 TraesCS2D01G599600 chr5B 87.671 73 8 1 3845 3917 704399163 704399234 2.770000e-12 84.2
47 TraesCS2D01G599600 chr5B 87.879 66 2 5 3926 3991 155289843 155289784 5.990000e-09 73.1
48 TraesCS2D01G599600 chr5B 86.301 73 3 6 3926 3998 557282579 557282514 5.990000e-09 73.1
49 TraesCS2D01G599600 chr5B 95.000 40 2 0 4016 4055 636609344 636609305 3.600000e-06 63.9
50 TraesCS2D01G599600 chr5B 86.538 52 6 1 4004 4054 315187218 315187167 6.030000e-04 56.5
51 TraesCS2D01G599600 chr3D 87.234 141 14 2 1 141 418731620 418731484 1.610000e-34 158.0
52 TraesCS2D01G599600 chr3D 100.000 36 0 0 140 175 554390084 554390119 2.790000e-07 67.6
53 TraesCS2D01G599600 chr3D 96.875 32 1 0 3758 3789 506705319 506705288 2.000000e-03 54.7
54 TraesCS2D01G599600 chr3B 87.500 136 14 1 3 138 163361960 163362092 2.080000e-33 154.0
55 TraesCS2D01G599600 chr3B 82.979 94 10 2 3851 3944 557030100 557030013 3.580000e-11 80.5
56 TraesCS2D01G599600 chr3B 87.879 66 2 4 3926 3991 532218336 532218395 5.990000e-09 73.1
57 TraesCS2D01G599600 chr3B 91.667 48 3 1 3954 4001 205779440 205779486 1.000000e-06 65.8
58 TraesCS2D01G599600 chr3B 84.058 69 5 4 3926 3994 55781109 55781171 1.300000e-05 62.1
59 TraesCS2D01G599600 chr7D 83.784 111 12 3 3848 3958 582662725 582662829 2.750000e-17 100.0
60 TraesCS2D01G599600 chr4A 80.420 143 15 8 3851 3992 147922223 147922093 3.550000e-16 97.1
61 TraesCS2D01G599600 chr4A 84.722 72 5 4 3926 3997 709692109 709692174 2.790000e-07 67.6
62 TraesCS2D01G599600 chr4A 100.000 29 0 0 3758 3786 25025263 25025235 2.000000e-03 54.7
63 TraesCS2D01G599600 chr4A 100.000 29 0 0 3758 3786 724557627 724557655 2.000000e-03 54.7
64 TraesCS2D01G599600 chr4A 100.000 29 0 0 3758 3786 724601624 724601596 2.000000e-03 54.7
65 TraesCS2D01G599600 chr5A 91.379 58 1 1 140 197 338233500 338233447 4.630000e-10 76.8
66 TraesCS2D01G599600 chr5A 92.000 50 2 2 4006 4055 633855098 633855051 7.750000e-08 69.4
67 TraesCS2D01G599600 chr5A 100.000 29 0 0 3757 3785 46012075 46012103 2.000000e-03 54.7
68 TraesCS2D01G599600 chr4D 91.837 49 2 2 4006 4054 74079397 74079351 2.790000e-07 67.6
69 TraesCS2D01G599600 chr4D 92.308 39 3 0 4016 4054 125248489 125248451 6.030000e-04 56.5
70 TraesCS2D01G599600 chr4D 100.000 30 0 0 3758 3787 508587184 508587155 6.030000e-04 56.5
71 TraesCS2D01G599600 chr6D 100.000 30 0 0 3758 3787 470845803 470845832 6.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G599600 chr2D 650860055 650864372 4317 True 7974.000000 7974 100.000000 1 4318 1 chr2D.!!$R4 4317
1 TraesCS2D01G599600 chr2A 777285767 777289572 3805 False 1632.000000 3552 91.989000 383 4229 3 chr2A.!!$F1 3846
2 TraesCS2D01G599600 chr2B 779853711 779858706 4995 True 822.714286 2396 92.742714 1 4302 7 chr2B.!!$R2 4301
3 TraesCS2D01G599600 chr7B 332556635 332557353 718 False 828.000000 828 87.862000 767 1471 1 chr7B.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 319 1.040646 GACCGGATCATGGTGCTAGA 58.959 55.000 9.46 0.0 40.63 2.43 F
433 441 1.132262 TCGGCTGAAAATCGAAATGCC 59.868 47.619 0.00 0.0 35.94 4.40 F
779 814 1.153667 GCGTCAGGAAGCAGAGAGG 60.154 63.158 2.30 0.0 35.86 3.69 F
1681 1752 1.233019 CAGGTGTGGTTTCTGCTGAG 58.767 55.000 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1535 1.039856 GGGAAAGAAAGCTGCCAACA 58.960 50.000 0.0 0.00 0.00 3.33 R
1666 1737 1.228245 GCCCTCAGCAGAAACCACA 60.228 57.895 0.0 0.00 42.97 4.17 R
1795 1866 1.601903 CCAAAAGTGCTGACAGCGTTA 59.398 47.619 22.0 2.17 46.26 3.18 R
3616 3956 0.037447 AAAGAGCAGGCAGGGAGTTC 59.963 55.000 0.0 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.698309 AGAGATTTCAATATGAACTACATACGG 57.302 33.333 0.00 0.00 43.12 4.02
42 43 8.677148 ATATGAACTACATACGGAGCAAAATT 57.323 30.769 0.00 0.00 43.12 1.82
43 44 6.176975 TGAACTACATACGGAGCAAAATTG 57.823 37.500 0.00 0.00 0.00 2.32
192 194 9.807649 ATTTGATTTATTGAGTTAATGCAGGAC 57.192 29.630 0.00 0.00 0.00 3.85
224 226 7.533900 ACGTACATGAGAAAAATCAAACGAATG 59.466 33.333 0.00 0.00 37.35 2.67
243 246 2.359975 GGGACAAGGGTGAAGGCG 60.360 66.667 0.00 0.00 0.00 5.52
244 247 2.359975 GGACAAGGGTGAAGGCGG 60.360 66.667 0.00 0.00 0.00 6.13
249 252 1.909781 AAGGGTGAAGGCGGACGTA 60.910 57.895 0.00 0.00 0.00 3.57
267 270 3.375922 ACGTACAAAAACCAACTCCACTG 59.624 43.478 0.00 0.00 0.00 3.66
277 280 5.562298 ACCAACTCCACTGTAACAGTAAT 57.438 39.130 0.00 0.00 43.43 1.89
282 285 7.545965 CCAACTCCACTGTAACAGTAATCTTAG 59.454 40.741 0.00 0.00 43.43 2.18
285 288 8.524487 ACTCCACTGTAACAGTAATCTTAGAAG 58.476 37.037 0.00 0.00 43.43 2.85
287 290 9.085645 TCCACTGTAACAGTAATCTTAGAAGAA 57.914 33.333 0.00 0.00 43.43 2.52
309 312 8.396272 AGAAAAATTATAAGACCGGATCATGG 57.604 34.615 9.46 0.00 0.00 3.66
314 317 1.496060 AAGACCGGATCATGGTGCTA 58.504 50.000 9.46 0.00 40.63 3.49
316 319 1.040646 GACCGGATCATGGTGCTAGA 58.959 55.000 9.46 0.00 40.63 2.43
338 341 3.350219 TGAAGCCATAACCAAGAGACC 57.650 47.619 0.00 0.00 0.00 3.85
343 346 2.614481 GCCATAACCAAGAGACCGAACA 60.614 50.000 0.00 0.00 0.00 3.18
346 349 4.332819 CCATAACCAAGAGACCGAACAATC 59.667 45.833 0.00 0.00 0.00 2.67
348 351 4.884668 AACCAAGAGACCGAACAATCTA 57.115 40.909 0.00 0.00 0.00 1.98
356 359 5.129485 AGAGACCGAACAATCTACCATGATT 59.871 40.000 0.00 0.00 37.16 2.57
370 373 3.646162 ACCATGATTGAATACTCGGCCTA 59.354 43.478 0.00 0.00 0.00 3.93
375 378 5.790593 TGATTGAATACTCGGCCTATTACC 58.209 41.667 0.00 0.00 0.00 2.85
389 392 5.105837 GGCCTATTACCGATCGAATCTAACT 60.106 44.000 18.66 0.00 0.00 2.24
395 398 3.315749 ACCGATCGAATCTAACTCAGACC 59.684 47.826 18.66 0.00 35.62 3.85
424 432 5.286438 GTTTTTAACTGGTCGGCTGAAAAT 58.714 37.500 0.00 0.00 0.00 1.82
433 441 1.132262 TCGGCTGAAAATCGAAATGCC 59.868 47.619 0.00 0.00 35.94 4.40
490 501 1.235724 ACGGCCAAACTTTCTAGTGC 58.764 50.000 2.24 0.00 34.01 4.40
492 503 1.464997 CGGCCAAACTTTCTAGTGCTC 59.535 52.381 2.24 0.00 34.01 4.26
494 505 2.413837 GCCAAACTTTCTAGTGCTCGA 58.586 47.619 0.00 0.00 34.01 4.04
506 518 4.864806 TCTAGTGCTCGATTAAGTTTGCAG 59.135 41.667 0.00 0.00 0.00 4.41
512 524 5.858049 TGCTCGATTAAGTTTGCAGAAAATG 59.142 36.000 0.00 0.00 0.00 2.32
518 530 7.358352 CGATTAAGTTTGCAGAAAATGTTGTCC 60.358 37.037 0.00 0.00 0.00 4.02
652 664 6.262601 ACAAACAAACGTGGTAATTTCTGAG 58.737 36.000 0.00 0.00 0.00 3.35
778 813 1.515952 CGCGTCAGGAAGCAGAGAG 60.516 63.158 0.00 0.00 35.53 3.20
779 814 1.153667 GCGTCAGGAAGCAGAGAGG 60.154 63.158 2.30 0.00 35.86 3.69
877 923 4.787871 GCAGAGGAGCGCCATTAT 57.212 55.556 9.88 0.00 36.29 1.28
1139 1185 2.641746 CCCCCTCAGGTCTCCTCCT 61.642 68.421 0.00 0.00 38.51 3.69
1141 1187 1.700368 CCCTCAGGTCTCCTCCTCA 59.300 63.158 0.00 0.00 35.37 3.86
1190 1241 5.011533 CGATTCCTTCCTAATCCTCACTGAT 59.988 44.000 0.00 0.00 30.98 2.90
1464 1535 1.307343 CACCTCCATCCTGGGGTCT 60.307 63.158 0.00 0.00 38.49 3.85
1476 1547 1.531602 GGGGTCTGTTGGCAGCTTT 60.532 57.895 2.28 0.00 42.29 3.51
1480 1551 1.683385 GGTCTGTTGGCAGCTTTCTTT 59.317 47.619 2.28 0.00 42.29 2.52
1502 1573 9.099071 TCTTTCCCCAATCAAAATCAAATCTTA 57.901 29.630 0.00 0.00 0.00 2.10
1674 1745 2.594592 AGCGGCAGGTGTGGTTTC 60.595 61.111 1.45 0.00 0.00 2.78
1681 1752 1.233019 CAGGTGTGGTTTCTGCTGAG 58.767 55.000 0.00 0.00 0.00 3.35
1820 1891 2.669391 GCTGTCAGCACTTTTGGTATGC 60.669 50.000 20.16 0.00 41.89 3.14
1832 1903 2.787473 TGGTATGCTGTTCCTCTTGG 57.213 50.000 0.00 0.00 0.00 3.61
1854 1925 5.832595 TGGTTGGTCAGAATCTTTCAATTCA 59.167 36.000 0.00 0.00 37.98 2.57
2139 2476 8.489676 ACATGGCATTGGGATTTAAATACATA 57.510 30.769 12.50 0.00 0.00 2.29
2329 2666 1.363744 CTTCCGTCTTCCATGCAGTC 58.636 55.000 0.00 0.00 0.00 3.51
2335 2672 2.498167 GTCTTCCATGCAGTCAACACT 58.502 47.619 0.00 0.00 0.00 3.55
2468 2805 1.065636 AGTGCATGGGAGTCAGTCATG 60.066 52.381 12.93 12.93 40.66 3.07
2656 2995 8.411683 AGCATATCATTTCCTTTCAGTTGATTC 58.588 33.333 0.00 0.00 0.00 2.52
2657 2996 8.192774 GCATATCATTTCCTTTCAGTTGATTCA 58.807 33.333 0.00 0.00 0.00 2.57
2693 3032 9.748708 TTTTAACTGAATGTTTCCAGAAATCAG 57.251 29.630 15.66 15.66 39.23 2.90
2739 3078 6.946340 TGGCATTCTCTTAGTGAAGAATGTA 58.054 36.000 20.24 11.18 45.38 2.29
2779 3118 4.689983 GCCAGTAAAAGCTAGATCCCCATT 60.690 45.833 0.00 0.00 0.00 3.16
2784 3123 8.429641 CAGTAAAAGCTAGATCCCCATTACTTA 58.570 37.037 0.00 0.00 31.86 2.24
2785 3124 8.999895 AGTAAAAGCTAGATCCCCATTACTTAA 58.000 33.333 0.00 0.00 30.47 1.85
2860 3199 7.881775 AAACTTATTAATGTAGCAAGGAGGG 57.118 36.000 0.00 0.00 0.00 4.30
2894 3233 7.283625 TGCTTAATGTTTACTGATGGTTTGT 57.716 32.000 0.00 0.00 0.00 2.83
2895 3234 8.397575 TGCTTAATGTTTACTGATGGTTTGTA 57.602 30.769 0.00 0.00 0.00 2.41
2896 3235 8.293867 TGCTTAATGTTTACTGATGGTTTGTAC 58.706 33.333 0.00 0.00 0.00 2.90
2897 3236 8.512138 GCTTAATGTTTACTGATGGTTTGTACT 58.488 33.333 0.00 0.00 0.00 2.73
2899 3238 7.448748 AATGTTTACTGATGGTTTGTACTCC 57.551 36.000 0.00 0.00 0.00 3.85
2900 3239 5.310451 TGTTTACTGATGGTTTGTACTCCC 58.690 41.667 0.00 0.00 0.00 4.30
2901 3240 5.072600 TGTTTACTGATGGTTTGTACTCCCT 59.927 40.000 0.00 0.00 0.00 4.20
2902 3241 3.983044 ACTGATGGTTTGTACTCCCTC 57.017 47.619 0.00 0.00 0.00 4.30
2903 3242 3.521727 ACTGATGGTTTGTACTCCCTCT 58.478 45.455 0.00 0.00 0.00 3.69
2904 3243 3.261897 ACTGATGGTTTGTACTCCCTCTG 59.738 47.826 0.00 4.27 0.00 3.35
2905 3244 3.248024 TGATGGTTTGTACTCCCTCTGT 58.752 45.455 0.00 0.00 0.00 3.41
2906 3245 4.422057 TGATGGTTTGTACTCCCTCTGTA 58.578 43.478 0.00 0.00 0.00 2.74
2907 3246 4.841813 TGATGGTTTGTACTCCCTCTGTAA 59.158 41.667 0.00 0.00 0.00 2.41
2908 3247 5.308497 TGATGGTTTGTACTCCCTCTGTAAA 59.692 40.000 0.00 0.00 0.00 2.01
2909 3248 4.964593 TGGTTTGTACTCCCTCTGTAAAC 58.035 43.478 0.00 0.00 0.00 2.01
2910 3249 4.657039 TGGTTTGTACTCCCTCTGTAAACT 59.343 41.667 0.00 0.00 0.00 2.66
2911 3250 5.840149 TGGTTTGTACTCCCTCTGTAAACTA 59.160 40.000 0.00 0.00 0.00 2.24
2912 3251 6.327104 TGGTTTGTACTCCCTCTGTAAACTAA 59.673 38.462 0.00 0.00 0.00 2.24
2913 3252 7.016858 TGGTTTGTACTCCCTCTGTAAACTAAT 59.983 37.037 0.00 0.00 0.00 1.73
2914 3253 8.534496 GGTTTGTACTCCCTCTGTAAACTAATA 58.466 37.037 0.00 0.00 0.00 0.98
2921 3260 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2922 3261 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2923 3262 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2924 3263 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2925 3264 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2970 3309 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2971 3310 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2972 3311 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2973 3312 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2974 3313 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2975 3314 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2976 3315 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2987 3326 2.322658 ACGGAGGGAGTACTTGTCAAA 58.677 47.619 0.00 0.00 0.00 2.69
3059 3398 1.667236 TAGATGCATGCGAACCAAGG 58.333 50.000 14.09 0.00 0.00 3.61
3082 3421 4.515191 GGTTTCACAGTTCTTGTATGCTGA 59.485 41.667 0.00 0.00 38.16 4.26
3103 3442 8.698210 TGCTGATTTAATCTGGAATGCTTAATT 58.302 29.630 12.51 0.00 0.00 1.40
3116 3455 8.807118 TGGAATGCTTAATTTATGTTTGGTACA 58.193 29.630 0.00 0.00 41.97 2.90
3121 3460 9.685828 TGCTTAATTTATGTTTGGTACACTTTC 57.314 29.630 0.00 0.00 40.19 2.62
3201 3541 4.553547 GCGATGCTTCCTTGACATCATAAC 60.554 45.833 0.00 0.00 40.15 1.89
3209 3549 7.334421 GCTTCCTTGACATCATAACTTTCAGTA 59.666 37.037 0.00 0.00 0.00 2.74
3340 3680 1.896220 AATGCTCGCTCCTGTTTCAA 58.104 45.000 0.00 0.00 0.00 2.69
3386 3726 2.427506 GTTTGCTTGACCTTCCGAGAT 58.572 47.619 0.00 0.00 0.00 2.75
3434 3774 2.495270 AGCAGACCACTCACTGTATCAG 59.505 50.000 0.00 0.00 36.62 2.90
3451 3791 4.606457 ATCAGTCAATAAGCGAGTTTGC 57.394 40.909 0.00 0.00 0.00 3.68
3477 3817 5.181056 AGTCGCATGATTGTTGTTGTATCAA 59.819 36.000 0.00 0.00 32.54 2.57
3502 3842 5.424757 TCAATAAACCCTGTTCCATAGTCG 58.575 41.667 0.00 0.00 0.00 4.18
3503 3843 2.781681 AAACCCTGTTCCATAGTCGG 57.218 50.000 0.00 0.00 0.00 4.79
3504 3844 0.909623 AACCCTGTTCCATAGTCGGG 59.090 55.000 0.00 0.00 37.70 5.14
3505 3845 1.146263 CCCTGTTCCATAGTCGGGC 59.854 63.158 0.00 0.00 0.00 6.13
3506 3846 1.227263 CCTGTTCCATAGTCGGGCG 60.227 63.158 0.00 0.00 0.00 6.13
3507 3847 1.672854 CCTGTTCCATAGTCGGGCGA 61.673 60.000 0.00 0.00 0.00 5.54
3508 3848 0.389391 CTGTTCCATAGTCGGGCGAT 59.611 55.000 0.00 0.00 0.00 4.58
3608 3948 2.103941 TGGGTTGGGTCATTTTTCTTGC 59.896 45.455 0.00 0.00 0.00 4.01
3616 3956 7.670009 TGGGTCATTTTTCTTGCAATAAATG 57.330 32.000 22.82 22.82 38.63 2.32
3622 3963 9.206870 TCATTTTTCTTGCAATAAATGAACTCC 57.793 29.630 25.94 0.00 41.45 3.85
3636 3977 0.251077 AACTCCCTGCCTGCTCTTTG 60.251 55.000 0.00 0.00 0.00 2.77
3668 4009 3.520569 ACATTTGCAGTTTTGGTGTCAC 58.479 40.909 0.00 0.00 0.00 3.67
3684 4025 0.032130 TCACTGAGTGCTCACCGTTC 59.968 55.000 7.93 0.00 35.46 3.95
3730 4071 0.396811 GTGTAGGGTTGTGCTCAGGT 59.603 55.000 0.00 0.00 0.00 4.00
3763 4104 9.614792 AAATGTCTGTAGATAACATTTACTCCC 57.385 33.333 10.11 0.00 46.38 4.30
3764 4105 7.973048 TGTCTGTAGATAACATTTACTCCCT 57.027 36.000 0.00 0.00 37.50 4.20
3765 4106 8.008513 TGTCTGTAGATAACATTTACTCCCTC 57.991 38.462 0.00 0.00 37.50 4.30
3767 4108 6.264744 TCTGTAGATAACATTTACTCCCTCCG 59.735 42.308 0.00 0.00 37.50 4.63
3769 4110 5.532664 AGATAACATTTACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
3770 4111 5.209659 AGATAACATTTACTCCCTCCGTCT 58.790 41.667 0.00 0.00 0.00 4.18
3771 4112 3.611766 AACATTTACTCCCTCCGTCTG 57.388 47.619 0.00 0.00 0.00 3.51
3772 4113 1.831736 ACATTTACTCCCTCCGTCTGG 59.168 52.381 0.00 0.00 0.00 3.86
3775 4116 2.544844 TTACTCCCTCCGTCTGGAAT 57.455 50.000 0.00 0.00 45.87 3.01
3776 4117 2.544844 TACTCCCTCCGTCTGGAATT 57.455 50.000 0.00 0.00 45.87 2.17
3777 4118 2.544844 ACTCCCTCCGTCTGGAATTA 57.455 50.000 0.00 0.00 45.87 1.40
3778 4119 2.108970 ACTCCCTCCGTCTGGAATTAC 58.891 52.381 0.00 0.00 45.87 1.89
3780 4121 2.766828 CTCCCTCCGTCTGGAATTACTT 59.233 50.000 0.00 0.00 45.87 2.24
3782 4123 2.236395 CCCTCCGTCTGGAATTACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
3783 4124 3.522553 CCTCCGTCTGGAATTACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
3785 4126 1.659098 CCGTCTGGAATTACTTGTCGC 59.341 52.381 0.00 0.00 37.49 5.19
3786 4127 1.659098 CGTCTGGAATTACTTGTCGCC 59.341 52.381 0.00 0.00 0.00 5.54
3787 4128 2.007608 GTCTGGAATTACTTGTCGCCC 58.992 52.381 0.00 0.00 0.00 6.13
3789 4130 1.737793 CTGGAATTACTTGTCGCCCAC 59.262 52.381 0.00 0.00 0.00 4.61
3790 4131 1.349688 TGGAATTACTTGTCGCCCACT 59.650 47.619 0.00 0.00 0.00 4.00
3791 4132 1.737793 GGAATTACTTGTCGCCCACTG 59.262 52.381 0.00 0.00 0.00 3.66
3792 4133 2.614481 GGAATTACTTGTCGCCCACTGA 60.614 50.000 0.00 0.00 0.00 3.41
3793 4134 2.851263 ATTACTTGTCGCCCACTGAA 57.149 45.000 0.00 0.00 0.00 3.02
3794 4135 2.623878 TTACTTGTCGCCCACTGAAA 57.376 45.000 0.00 0.00 0.00 2.69
3795 4136 1.873698 TACTTGTCGCCCACTGAAAC 58.126 50.000 0.00 0.00 0.00 2.78
3797 4138 0.868406 CTTGTCGCCCACTGAAACTC 59.132 55.000 0.00 0.00 0.00 3.01
3798 4139 0.179234 TTGTCGCCCACTGAAACTCA 59.821 50.000 0.00 0.00 0.00 3.41
3799 4140 0.179234 TGTCGCCCACTGAAACTCAA 59.821 50.000 0.00 0.00 0.00 3.02
3801 4142 1.880027 GTCGCCCACTGAAACTCAAAT 59.120 47.619 0.00 0.00 0.00 2.32
3802 4143 3.071479 GTCGCCCACTGAAACTCAAATA 58.929 45.455 0.00 0.00 0.00 1.40
3804 4145 3.007506 TCGCCCACTGAAACTCAAATAGA 59.992 43.478 0.00 0.00 0.00 1.98
3805 4146 3.125316 CGCCCACTGAAACTCAAATAGAC 59.875 47.826 0.00 0.00 0.00 2.59
3823 4217 4.617808 AGACTAGCGTGTGTATGTAGTG 57.382 45.455 0.00 0.00 0.00 2.74
3831 4225 3.851969 CGTGTGTATGTAGTGCAGTACTG 59.148 47.826 27.53 18.93 40.65 2.74
3832 4226 4.615223 CGTGTGTATGTAGTGCAGTACTGT 60.615 45.833 27.53 19.55 40.65 3.55
3833 4227 5.227908 GTGTGTATGTAGTGCAGTACTGTT 58.772 41.667 27.53 16.72 40.65 3.16
3835 4229 6.864685 GTGTGTATGTAGTGCAGTACTGTTTA 59.135 38.462 27.53 11.37 40.65 2.01
3836 4230 7.061905 GTGTGTATGTAGTGCAGTACTGTTTAG 59.938 40.741 27.53 0.00 40.65 1.85
3837 4231 6.034683 GTGTATGTAGTGCAGTACTGTTTAGC 59.965 42.308 27.53 9.81 40.65 3.09
3838 4232 4.594123 TGTAGTGCAGTACTGTTTAGCA 57.406 40.909 27.53 12.40 40.65 3.49
3839 4233 5.147330 TGTAGTGCAGTACTGTTTAGCAT 57.853 39.130 27.53 8.10 40.65 3.79
3840 4234 4.929211 TGTAGTGCAGTACTGTTTAGCATG 59.071 41.667 27.53 0.00 40.65 4.06
3841 4235 4.008074 AGTGCAGTACTGTTTAGCATGT 57.992 40.909 23.44 4.73 38.49 3.21
3842 4236 3.748048 AGTGCAGTACTGTTTAGCATGTG 59.252 43.478 23.44 0.00 38.49 3.21
3845 4239 5.351465 GTGCAGTACTGTTTAGCATGTGTAT 59.649 40.000 23.44 0.00 37.56 2.29
3846 4240 5.351189 TGCAGTACTGTTTAGCATGTGTATG 59.649 40.000 23.44 0.00 37.36 2.39
3847 4241 5.351465 GCAGTACTGTTTAGCATGTGTATGT 59.649 40.000 23.44 0.00 36.65 2.29
3848 4242 6.533723 GCAGTACTGTTTAGCATGTGTATGTA 59.466 38.462 23.44 0.00 36.65 2.29
3849 4243 7.254117 GCAGTACTGTTTAGCATGTGTATGTAG 60.254 40.741 23.44 0.00 36.65 2.74
3850 4244 7.759886 CAGTACTGTTTAGCATGTGTATGTAGT 59.240 37.037 15.06 0.00 36.65 2.73
3851 4245 8.963725 AGTACTGTTTAGCATGTGTATGTAGTA 58.036 33.333 0.00 0.00 36.65 1.82
3852 4246 9.017669 GTACTGTTTAGCATGTGTATGTAGTAC 57.982 37.037 0.00 0.00 36.65 2.73
3853 4247 7.837863 ACTGTTTAGCATGTGTATGTAGTACT 58.162 34.615 0.00 0.00 36.65 2.73
3854 4248 7.974501 ACTGTTTAGCATGTGTATGTAGTACTC 59.025 37.037 0.00 0.00 36.65 2.59
3855 4249 7.262772 TGTTTAGCATGTGTATGTAGTACTCC 58.737 38.462 0.00 0.00 36.65 3.85
3856 4250 4.939052 AGCATGTGTATGTAGTACTCCC 57.061 45.455 0.00 0.00 36.65 4.30
3858 4252 4.585162 AGCATGTGTATGTAGTACTCCCTC 59.415 45.833 0.00 0.00 36.65 4.30
3859 4253 4.585162 GCATGTGTATGTAGTACTCCCTCT 59.415 45.833 0.00 0.00 36.65 3.69
3861 4255 5.188988 TGTGTATGTAGTACTCCCTCTGT 57.811 43.478 0.00 0.00 34.27 3.41
3862 4256 5.191426 TGTGTATGTAGTACTCCCTCTGTC 58.809 45.833 0.00 0.00 34.27 3.51
3863 4257 5.045066 TGTGTATGTAGTACTCCCTCTGTCT 60.045 44.000 0.00 0.00 34.27 3.41
3864 4258 5.297278 GTGTATGTAGTACTCCCTCTGTCTG 59.703 48.000 0.00 0.00 34.27 3.51
3865 4259 4.864483 ATGTAGTACTCCCTCTGTCTGA 57.136 45.455 0.00 0.00 0.00 3.27
3866 4260 4.652679 TGTAGTACTCCCTCTGTCTGAA 57.347 45.455 0.00 0.00 0.00 3.02
3868 4262 5.580998 TGTAGTACTCCCTCTGTCTGAAAT 58.419 41.667 0.00 0.00 0.00 2.17
3869 4263 6.017192 TGTAGTACTCCCTCTGTCTGAAATT 58.983 40.000 0.00 0.00 0.00 1.82
3871 4265 6.532988 AGTACTCCCTCTGTCTGAAATTAC 57.467 41.667 0.00 0.00 0.00 1.89
3872 4266 6.257586 AGTACTCCCTCTGTCTGAAATTACT 58.742 40.000 0.00 0.00 0.00 2.24
3873 4267 6.726764 AGTACTCCCTCTGTCTGAAATTACTT 59.273 38.462 0.00 0.00 0.00 2.24
3874 4268 5.799213 ACTCCCTCTGTCTGAAATTACTTG 58.201 41.667 0.00 0.00 0.00 3.16
3875 4269 5.308237 ACTCCCTCTGTCTGAAATTACTTGT 59.692 40.000 0.00 0.00 0.00 3.16
3876 4270 5.794894 TCCCTCTGTCTGAAATTACTTGTC 58.205 41.667 0.00 0.00 0.00 3.18
3877 4271 5.306937 TCCCTCTGTCTGAAATTACTTGTCA 59.693 40.000 0.00 0.00 0.00 3.58
3879 4273 5.991606 CCTCTGTCTGAAATTACTTGTCACA 59.008 40.000 0.00 0.00 0.00 3.58
3883 4277 8.735315 TCTGTCTGAAATTACTTGTCACAAAAA 58.265 29.630 0.00 0.00 0.00 1.94
3884 4278 9.520204 CTGTCTGAAATTACTTGTCACAAAAAT 57.480 29.630 0.00 0.00 0.00 1.82
3885 4279 9.299963 TGTCTGAAATTACTTGTCACAAAAATG 57.700 29.630 0.00 0.00 0.00 2.32
3886 4280 9.515020 GTCTGAAATTACTTGTCACAAAAATGA 57.485 29.630 0.00 0.00 0.00 2.57
3927 4321 8.974060 TTTAGAACAAAAATAGGTGTCTGTCT 57.026 30.769 0.00 0.00 0.00 3.41
3929 4323 9.706691 TTAGAACAAAAATAGGTGTCTGTCTAG 57.293 33.333 0.00 0.00 0.00 2.43
3930 4324 7.963532 AGAACAAAAATAGGTGTCTGTCTAGA 58.036 34.615 0.00 0.00 0.00 2.43
3931 4325 8.598041 AGAACAAAAATAGGTGTCTGTCTAGAT 58.402 33.333 0.00 0.00 34.94 1.98
3932 4326 9.871238 GAACAAAAATAGGTGTCTGTCTAGATA 57.129 33.333 0.00 0.00 34.94 1.98
3933 4327 9.654663 AACAAAAATAGGTGTCTGTCTAGATAC 57.345 33.333 0.00 0.00 42.42 2.24
3934 4328 8.812972 ACAAAAATAGGTGTCTGTCTAGATACA 58.187 33.333 0.00 0.00 44.24 2.29
3935 4329 9.823647 CAAAAATAGGTGTCTGTCTAGATACAT 57.176 33.333 0.00 2.37 44.24 2.29
3938 4332 8.768501 AATAGGTGTCTGTCTAGATACATTCA 57.231 34.615 0.00 0.00 44.24 2.57
3939 4333 8.948401 ATAGGTGTCTGTCTAGATACATTCAT 57.052 34.615 0.00 0.00 44.24 2.57
3940 4334 7.667575 AGGTGTCTGTCTAGATACATTCATT 57.332 36.000 0.00 0.00 44.24 2.57
3941 4335 8.083828 AGGTGTCTGTCTAGATACATTCATTT 57.916 34.615 0.00 0.00 44.24 2.32
3942 4336 8.200792 AGGTGTCTGTCTAGATACATTCATTTC 58.799 37.037 0.00 0.00 44.24 2.17
3943 4337 8.200792 GGTGTCTGTCTAGATACATTCATTTCT 58.799 37.037 0.00 0.00 44.24 2.52
3944 4338 9.243637 GTGTCTGTCTAGATACATTCATTTCTC 57.756 37.037 0.00 0.00 42.61 2.87
3945 4339 9.194972 TGTCTGTCTAGATACATTCATTTCTCT 57.805 33.333 0.00 0.00 34.94 3.10
3962 4356 9.658799 TCATTTCTCTAACAAGTATTTCCTCTG 57.341 33.333 0.00 0.00 0.00 3.35
3963 4357 9.658799 CATTTCTCTAACAAGTATTTCCTCTGA 57.341 33.333 0.00 0.00 0.00 3.27
3964 4358 9.660180 ATTTCTCTAACAAGTATTTCCTCTGAC 57.340 33.333 0.00 0.00 0.00 3.51
3965 4359 7.776618 TCTCTAACAAGTATTTCCTCTGACA 57.223 36.000 0.00 0.00 0.00 3.58
3966 4360 8.190326 TCTCTAACAAGTATTTCCTCTGACAA 57.810 34.615 0.00 0.00 0.00 3.18
3967 4361 8.307483 TCTCTAACAAGTATTTCCTCTGACAAG 58.693 37.037 0.00 0.00 0.00 3.16
3968 4362 7.963532 TCTAACAAGTATTTCCTCTGACAAGT 58.036 34.615 0.00 0.00 0.00 3.16
3969 4363 9.085645 TCTAACAAGTATTTCCTCTGACAAGTA 57.914 33.333 0.00 0.00 0.00 2.24
3970 4364 9.877178 CTAACAAGTATTTCCTCTGACAAGTAT 57.123 33.333 0.00 0.00 0.00 2.12
3972 4366 9.574516 AACAAGTATTTCCTCTGACAAGTATTT 57.425 29.630 0.00 0.00 0.00 1.40
3973 4367 9.220767 ACAAGTATTTCCTCTGACAAGTATTTC 57.779 33.333 0.00 0.00 0.00 2.17
3974 4368 8.669243 CAAGTATTTCCTCTGACAAGTATTTCC 58.331 37.037 0.00 0.00 0.00 3.13
3975 4369 7.042335 AGTATTTCCTCTGACAAGTATTTCCG 58.958 38.462 0.00 0.00 0.00 4.30
3976 4370 3.887621 TCCTCTGACAAGTATTTCCGG 57.112 47.619 0.00 0.00 0.00 5.14
4008 4405 9.403583 GGGAGTATTTATTTATGTCTTGGTTCA 57.596 33.333 0.00 0.00 0.00 3.18
4019 4563 8.925161 TTATGTCTTGGTTCAGAAAACAAAAG 57.075 30.769 3.81 0.00 41.42 2.27
4025 4569 6.582677 TGGTTCAGAAAACAAAAGTCAGAA 57.417 33.333 0.00 0.00 0.00 3.02
4032 4576 7.970061 TCAGAAAACAAAAGTCAGAACATCTTG 59.030 33.333 0.00 0.00 0.00 3.02
4057 4601 1.273154 TGTGAACGGAGGGGGTACATA 60.273 52.381 0.00 0.00 0.00 2.29
4103 4649 7.066525 TCCTCTACCGCCAGTTAAAAATATTTG 59.933 37.037 0.39 0.00 0.00 2.32
4129 5099 6.453922 GCCTTATTCTAGTTTTTCTCGACACG 60.454 42.308 0.00 0.00 0.00 4.49
4154 5124 7.749126 CGACTAAAAATTACTTGCAAGGTAAGG 59.251 37.037 29.18 12.36 33.50 2.69
4302 5311 2.350197 CGTTACTGATACCGATCGACCC 60.350 54.545 18.66 3.29 34.49 4.46
4303 5312 1.516161 TACTGATACCGATCGACCCG 58.484 55.000 18.66 1.54 34.49 5.28
4309 5318 2.726274 CCGATCGACCCGGGTAAG 59.274 66.667 30.38 23.97 43.05 2.34
4310 5319 2.123428 CCGATCGACCCGGGTAAGT 61.123 63.158 30.38 15.60 43.05 2.24
4311 5320 0.819259 CCGATCGACCCGGGTAAGTA 60.819 60.000 30.38 12.94 43.05 2.24
4312 5321 0.308993 CGATCGACCCGGGTAAGTAC 59.691 60.000 30.38 13.34 0.00 2.73
4313 5322 0.670706 GATCGACCCGGGTAAGTACC 59.329 60.000 30.38 12.47 45.71 3.34
4314 5323 0.259938 ATCGACCCGGGTAAGTACCT 59.740 55.000 30.38 0.00 45.72 3.08
4315 5324 0.039618 TCGACCCGGGTAAGTACCTT 59.960 55.000 30.38 0.00 45.72 3.50
4316 5325 1.283613 TCGACCCGGGTAAGTACCTTA 59.716 52.381 30.38 3.58 45.72 2.69
4317 5326 1.405463 CGACCCGGGTAAGTACCTTAC 59.595 57.143 30.38 9.05 45.72 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.183360 CCAATTTTGCTCCGTATGTAGTTCAT 60.183 38.462 0.00 0.00 40.25 2.57
33 34 6.150140 AGAGTGTAGATTCACCAATTTTGCTC 59.850 38.462 0.00 0.00 38.91 4.26
42 43 9.817809 GACATATTTTAGAGTGTAGATTCACCA 57.182 33.333 0.00 0.00 38.91 4.17
65 66 9.946165 CAAACTACATACGAATGTATCTAGACA 57.054 33.333 0.00 0.00 45.33 3.41
112 113 9.930158 ACTTCCTCTGTTTCTAGATATAAGTCT 57.070 33.333 0.00 0.00 0.00 3.24
129 130 8.507249 CAAAACCTCAACTAAATACTTCCTCTG 58.493 37.037 0.00 0.00 0.00 3.35
130 131 8.437575 TCAAAACCTCAACTAAATACTTCCTCT 58.562 33.333 0.00 0.00 0.00 3.69
175 177 2.420022 GCACGTCCTGCATTAACTCAAT 59.580 45.455 0.00 0.00 46.29 2.57
205 207 5.767665 TCCCTCATTCGTTTGATTTTTCTCA 59.232 36.000 0.00 0.00 0.00 3.27
224 226 1.002011 GCCTTCACCCTTGTCCCTC 60.002 63.158 0.00 0.00 0.00 4.30
243 246 2.944349 TGGAGTTGGTTTTTGTACGTCC 59.056 45.455 0.00 0.00 0.00 4.79
244 247 3.624410 AGTGGAGTTGGTTTTTGTACGTC 59.376 43.478 0.00 0.00 0.00 4.34
249 252 4.767928 TGTTACAGTGGAGTTGGTTTTTGT 59.232 37.500 0.00 0.00 0.00 2.83
282 285 9.884465 CATGATCCGGTCTTATAATTTTTCTTC 57.116 33.333 0.00 0.00 0.00 2.87
285 288 8.076178 CACCATGATCCGGTCTTATAATTTTTC 58.924 37.037 0.00 0.00 33.25 2.29
287 290 6.016276 GCACCATGATCCGGTCTTATAATTTT 60.016 38.462 0.00 0.00 33.25 1.82
289 292 5.003804 GCACCATGATCCGGTCTTATAATT 58.996 41.667 0.00 0.00 33.25 1.40
293 296 2.050144 AGCACCATGATCCGGTCTTAT 58.950 47.619 0.00 0.00 33.25 1.73
309 312 4.199310 TGGTTATGGCTTCATTCTAGCAC 58.801 43.478 0.00 0.00 40.42 4.40
314 317 5.189180 GTCTCTTGGTTATGGCTTCATTCT 58.811 41.667 0.00 0.00 32.59 2.40
316 319 4.273318 GGTCTCTTGGTTATGGCTTCATT 58.727 43.478 0.00 0.00 32.59 2.57
343 346 5.934625 GCCGAGTATTCAATCATGGTAGATT 59.065 40.000 0.00 0.00 38.72 2.40
346 349 3.997021 GGCCGAGTATTCAATCATGGTAG 59.003 47.826 0.00 0.00 0.00 3.18
348 351 2.439507 AGGCCGAGTATTCAATCATGGT 59.560 45.455 0.00 0.00 0.00 3.55
366 369 5.952033 AGTTAGATTCGATCGGTAATAGGC 58.048 41.667 16.41 0.39 0.00 3.93
370 373 6.294065 GGTCTGAGTTAGATTCGATCGGTAAT 60.294 42.308 16.41 8.57 37.83 1.89
375 378 4.513692 AGAGGTCTGAGTTAGATTCGATCG 59.486 45.833 9.36 9.36 37.83 3.69
378 381 4.399618 CCAAGAGGTCTGAGTTAGATTCGA 59.600 45.833 0.00 0.00 37.83 3.71
395 398 3.304458 GCCGACCAGTTAAAAACCAAGAG 60.304 47.826 0.00 0.00 0.00 2.85
404 407 3.187637 CGATTTTCAGCCGACCAGTTAAA 59.812 43.478 0.00 0.00 0.00 1.52
405 408 2.739913 CGATTTTCAGCCGACCAGTTAA 59.260 45.455 0.00 0.00 0.00 2.01
408 411 0.320374 TCGATTTTCAGCCGACCAGT 59.680 50.000 0.00 0.00 0.00 4.00
409 412 1.438651 TTCGATTTTCAGCCGACCAG 58.561 50.000 0.00 0.00 31.60 4.00
440 448 7.510549 GGCAACATGGCTTATATTTTAGAGA 57.489 36.000 0.00 0.00 40.14 3.10
490 501 7.379529 ACAACATTTTCTGCAAACTTAATCGAG 59.620 33.333 0.00 0.00 0.00 4.04
492 503 7.358352 GGACAACATTTTCTGCAAACTTAATCG 60.358 37.037 0.00 0.00 0.00 3.34
494 505 6.420604 CGGACAACATTTTCTGCAAACTTAAT 59.579 34.615 0.00 0.00 0.00 1.40
506 518 6.454186 GCATTAAAGATGCGGACAACATTTTC 60.454 38.462 0.00 0.00 35.17 2.29
512 524 2.163412 TGGCATTAAAGATGCGGACAAC 59.837 45.455 5.06 0.00 45.41 3.32
518 530 5.783100 ATTTGTTTGGCATTAAAGATGCG 57.217 34.783 5.06 0.00 45.41 4.73
680 692 5.009110 GGAACTTTGGATTAGGATTAGCAGC 59.991 44.000 0.00 0.00 0.00 5.25
681 693 5.532779 GGGAACTTTGGATTAGGATTAGCAG 59.467 44.000 0.00 0.00 0.00 4.24
682 694 5.445964 GGGAACTTTGGATTAGGATTAGCA 58.554 41.667 0.00 0.00 0.00 3.49
683 695 4.515567 CGGGAACTTTGGATTAGGATTAGC 59.484 45.833 0.00 0.00 0.00 3.09
763 798 1.220477 GGCCTCTCTGCTTCCTGAC 59.780 63.158 0.00 0.00 0.00 3.51
764 799 1.229304 TGGCCTCTCTGCTTCCTGA 60.229 57.895 3.32 0.00 0.00 3.86
765 800 1.221293 CTGGCCTCTCTGCTTCCTG 59.779 63.158 3.32 0.00 0.00 3.86
773 808 3.073735 CTGGACGCTGGCCTCTCT 61.074 66.667 3.32 0.00 0.00 3.10
860 897 1.312815 AAATAATGGCGCTCCTCTGC 58.687 50.000 7.64 0.00 0.00 4.26
861 898 2.945008 TCAAAATAATGGCGCTCCTCTG 59.055 45.455 7.64 0.00 0.00 3.35
862 899 3.281727 TCAAAATAATGGCGCTCCTCT 57.718 42.857 7.64 0.00 0.00 3.69
877 923 5.222316 TGGGGAAAGAATCAGAGGATCAAAA 60.222 40.000 0.00 0.00 37.82 2.44
974 1020 1.740025 CAAATCTTTCGGCCTCTGACC 59.260 52.381 0.00 0.00 0.00 4.02
1139 1185 3.866379 ATGGCGTTTGCTGGGCTGA 62.866 57.895 0.00 0.00 42.25 4.26
1141 1187 3.064324 GATGGCGTTTGCTGGGCT 61.064 61.111 0.00 0.00 42.25 5.19
1227 1298 1.472662 CCGTCAGGTCAACCTCCACT 61.473 60.000 0.00 0.00 46.65 4.00
1464 1535 1.039856 GGGAAAGAAAGCTGCCAACA 58.960 50.000 0.00 0.00 0.00 3.33
1476 1547 7.557875 AGATTTGATTTTGATTGGGGAAAGA 57.442 32.000 0.00 0.00 0.00 2.52
1480 1551 9.189156 CTACTAAGATTTGATTTTGATTGGGGA 57.811 33.333 0.00 0.00 0.00 4.81
1502 1573 4.777896 TCAGGAAGGTTCAGCATAACTACT 59.222 41.667 1.82 0.00 0.00 2.57
1508 1579 2.906389 ACTGTCAGGAAGGTTCAGCATA 59.094 45.455 4.53 0.00 0.00 3.14
1612 1683 2.876645 GAGAACGCAGCCGACGAG 60.877 66.667 0.00 0.00 38.29 4.18
1660 1731 3.042560 GCAGAAACCACACCTGCC 58.957 61.111 0.00 0.00 45.38 4.85
1666 1737 1.228245 GCCCTCAGCAGAAACCACA 60.228 57.895 0.00 0.00 42.97 4.17
1699 1770 1.903404 CCCCAACAACTGCCACTCC 60.903 63.158 0.00 0.00 0.00 3.85
1795 1866 1.601903 CCAAAAGTGCTGACAGCGTTA 59.398 47.619 22.00 2.17 46.26 3.18
1820 1891 2.104792 TCTGACCAACCAAGAGGAACAG 59.895 50.000 0.00 0.00 38.69 3.16
1832 1903 5.853282 CGTGAATTGAAAGATTCTGACCAAC 59.147 40.000 0.00 0.00 37.04 3.77
1955 2260 9.419737 GTCGATTTAAACTTTTAACGTACAACA 57.580 29.630 0.00 0.00 32.77 3.33
1956 2261 9.636965 AGTCGATTTAAACTTTTAACGTACAAC 57.363 29.630 0.00 0.00 32.77 3.32
2139 2476 6.216801 TGCTTCCTAATAGTCACGTAACAT 57.783 37.500 0.00 0.00 0.00 2.71
2329 2666 6.650807 TGGAAAGCTCTTCACTAATAGTGTTG 59.349 38.462 18.71 12.88 46.03 3.33
2335 2672 5.420725 TGCTGGAAAGCTCTTCACTAATA 57.579 39.130 9.75 0.00 35.49 0.98
2362 2699 4.273318 TCTCATCAGTAGCAGCTAACTCA 58.727 43.478 2.87 0.00 0.00 3.41
2468 2805 2.285488 GCAGCACGGTTTCTATAGAAGC 59.715 50.000 18.24 18.24 35.21 3.86
2590 2927 6.589830 AGCGATATAAAAGCTACACAAGTG 57.410 37.500 0.00 0.00 39.74 3.16
2693 3032 1.605710 AGACTGCATTTGTGCACACTC 59.394 47.619 21.56 9.32 40.23 3.51
2860 3199 8.296713 TCAGTAAACATTAAGCAATTTCCAGTC 58.703 33.333 0.00 0.00 0.00 3.51
2895 3234 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2896 3235 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2897 3236 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2898 3237 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2899 3238 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2944 3283 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2945 3284 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2946 3285 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2947 3286 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2948 3287 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2949 3288 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2950 3289 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2951 3290 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2952 3291 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2953 3292 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2954 3293 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2955 3294 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2956 3295 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
2957 3296 7.562821 ACAAGTACTCCCTCCGTAAACTAATAT 59.437 37.037 0.00 0.00 0.00 1.28
2958 3297 6.891908 ACAAGTACTCCCTCCGTAAACTAATA 59.108 38.462 0.00 0.00 0.00 0.98
2959 3298 5.718607 ACAAGTACTCCCTCCGTAAACTAAT 59.281 40.000 0.00 0.00 0.00 1.73
2960 3299 5.079643 ACAAGTACTCCCTCCGTAAACTAA 58.920 41.667 0.00 0.00 0.00 2.24
2961 3300 4.666512 ACAAGTACTCCCTCCGTAAACTA 58.333 43.478 0.00 0.00 0.00 2.24
2962 3301 3.504375 ACAAGTACTCCCTCCGTAAACT 58.496 45.455 0.00 0.00 0.00 2.66
2963 3302 3.256631 TGACAAGTACTCCCTCCGTAAAC 59.743 47.826 0.00 0.00 0.00 2.01
2964 3303 3.499338 TGACAAGTACTCCCTCCGTAAA 58.501 45.455 0.00 0.00 0.00 2.01
2965 3304 3.159213 TGACAAGTACTCCCTCCGTAA 57.841 47.619 0.00 0.00 0.00 3.18
2966 3305 2.885135 TGACAAGTACTCCCTCCGTA 57.115 50.000 0.00 0.00 0.00 4.02
2967 3306 2.005370 TTGACAAGTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
2968 3307 3.396260 TTTTGACAAGTACTCCCTCCG 57.604 47.619 0.00 0.00 0.00 4.63
2969 3308 4.019231 AGGATTTTGACAAGTACTCCCTCC 60.019 45.833 0.00 0.00 0.00 4.30
2970 3309 5.167303 AGGATTTTGACAAGTACTCCCTC 57.833 43.478 0.00 0.00 0.00 4.30
2971 3310 5.584551 AAGGATTTTGACAAGTACTCCCT 57.415 39.130 0.00 0.00 0.00 4.20
2972 3311 7.754851 TTAAAGGATTTTGACAAGTACTCCC 57.245 36.000 0.00 0.00 40.09 4.30
2987 3326 8.793592 GTTGTACCACAGAGAAATTAAAGGATT 58.206 33.333 0.00 0.00 0.00 3.01
3059 3398 4.515191 TCAGCATACAAGAACTGTGAAACC 59.485 41.667 0.00 0.00 39.20 3.27
3103 3442 7.280428 TGAAACTCGAAAGTGTACCAAACATAA 59.720 33.333 0.00 0.00 41.10 1.90
3116 3455 7.087639 TCAAAATGTTTGTGAAACTCGAAAGT 58.912 30.769 0.00 0.00 41.90 2.66
3166 3506 2.305405 GCATCGCTGCTAAGTCAGG 58.695 57.895 3.51 0.00 45.32 3.86
3201 3541 9.450807 CAAAACTAACTTGGACAATACTGAAAG 57.549 33.333 0.00 0.00 42.29 2.62
3209 3549 6.265422 CCTTCTCCAAAACTAACTTGGACAAT 59.735 38.462 0.13 0.00 45.88 2.71
3340 3680 9.396022 CCTAAAAATAGTGTACAACATCTCCAT 57.604 33.333 0.00 0.00 0.00 3.41
3386 3726 5.124457 GCACAGAATAGGAAGAATGCTTTCA 59.876 40.000 14.15 0.00 33.61 2.69
3434 3774 2.484264 ACTGGCAAACTCGCTTATTGAC 59.516 45.455 0.00 0.00 32.60 3.18
3451 3791 2.030893 ACAACAACAATCATGCGACTGG 60.031 45.455 0.00 0.00 0.00 4.00
3505 3845 2.359354 TTCCAACCACGCCCATCG 60.359 61.111 0.00 0.00 45.38 3.84
3506 3846 2.046285 CCTTCCAACCACGCCCATC 61.046 63.158 0.00 0.00 0.00 3.51
3507 3847 2.035626 CCTTCCAACCACGCCCAT 59.964 61.111 0.00 0.00 0.00 4.00
3508 3848 2.075355 ATTCCTTCCAACCACGCCCA 62.075 55.000 0.00 0.00 0.00 5.36
3608 3948 3.181483 GCAGGCAGGGAGTTCATTTATTG 60.181 47.826 0.00 0.00 0.00 1.90
3616 3956 0.037447 AAAGAGCAGGCAGGGAGTTC 59.963 55.000 0.00 0.00 0.00 3.01
3622 3963 1.228367 ACACCAAAGAGCAGGCAGG 60.228 57.895 0.00 0.00 0.00 4.85
3636 3977 4.040445 ACTGCAAATGTTTACACACACC 57.960 40.909 0.00 0.00 35.03 4.16
3668 4009 0.240145 TACGAACGGTGAGCACTCAG 59.760 55.000 0.00 0.00 40.75 3.35
3684 4025 5.233050 CCAATCAGAGCTCACTGTAATTACG 59.767 44.000 17.77 8.21 38.79 3.18
3760 4101 2.500098 CAAGTAATTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
3761 4102 2.236395 ACAAGTAATTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
3762 4103 3.522553 GACAAGTAATTCCAGACGGAGG 58.477 50.000 0.00 0.00 44.10 4.30
3763 4104 3.179830 CGACAAGTAATTCCAGACGGAG 58.820 50.000 0.00 0.00 44.10 4.63
3764 4105 2.673043 GCGACAAGTAATTCCAGACGGA 60.673 50.000 0.00 0.00 40.60 4.69
3765 4106 1.659098 GCGACAAGTAATTCCAGACGG 59.341 52.381 0.00 0.00 0.00 4.79
3767 4108 2.007608 GGGCGACAAGTAATTCCAGAC 58.992 52.381 0.00 0.00 0.00 3.51
3769 4110 1.737793 GTGGGCGACAAGTAATTCCAG 59.262 52.381 0.00 0.00 0.00 3.86
3770 4111 1.349688 AGTGGGCGACAAGTAATTCCA 59.650 47.619 1.61 0.00 0.00 3.53
3771 4112 1.737793 CAGTGGGCGACAAGTAATTCC 59.262 52.381 1.61 0.00 0.00 3.01
3772 4113 2.695359 TCAGTGGGCGACAAGTAATTC 58.305 47.619 1.61 0.00 0.00 2.17
3775 4116 2.158871 AGTTTCAGTGGGCGACAAGTAA 60.159 45.455 1.61 0.00 0.00 2.24
3776 4117 1.414919 AGTTTCAGTGGGCGACAAGTA 59.585 47.619 1.61 0.00 0.00 2.24
3777 4118 0.180406 AGTTTCAGTGGGCGACAAGT 59.820 50.000 1.61 0.00 0.00 3.16
3778 4119 0.868406 GAGTTTCAGTGGGCGACAAG 59.132 55.000 1.61 0.00 0.00 3.16
3780 4121 0.179234 TTGAGTTTCAGTGGGCGACA 59.821 50.000 1.61 0.00 0.00 4.35
3782 4123 2.270352 ATTTGAGTTTCAGTGGGCGA 57.730 45.000 0.00 0.00 0.00 5.54
3783 4124 3.125316 GTCTATTTGAGTTTCAGTGGGCG 59.875 47.826 0.00 0.00 0.00 6.13
3785 4126 5.582665 GCTAGTCTATTTGAGTTTCAGTGGG 59.417 44.000 0.00 0.00 0.00 4.61
3786 4127 5.289675 CGCTAGTCTATTTGAGTTTCAGTGG 59.710 44.000 0.00 0.00 0.00 4.00
3787 4128 5.864474 ACGCTAGTCTATTTGAGTTTCAGTG 59.136 40.000 0.00 0.00 0.00 3.66
3789 4130 5.864474 ACACGCTAGTCTATTTGAGTTTCAG 59.136 40.000 0.00 0.00 0.00 3.02
3790 4131 5.633601 CACACGCTAGTCTATTTGAGTTTCA 59.366 40.000 0.00 0.00 0.00 2.69
3791 4132 5.634020 ACACACGCTAGTCTATTTGAGTTTC 59.366 40.000 0.00 0.00 0.00 2.78
3792 4133 5.539048 ACACACGCTAGTCTATTTGAGTTT 58.461 37.500 0.00 0.00 0.00 2.66
3793 4134 5.135508 ACACACGCTAGTCTATTTGAGTT 57.864 39.130 0.00 0.00 0.00 3.01
3794 4135 4.785511 ACACACGCTAGTCTATTTGAGT 57.214 40.909 0.00 0.00 0.00 3.41
3795 4136 6.266323 ACATACACACGCTAGTCTATTTGAG 58.734 40.000 0.00 0.00 0.00 3.02
3797 4138 7.165977 CACTACATACACACGCTAGTCTATTTG 59.834 40.741 0.00 0.00 0.00 2.32
3798 4139 7.194278 CACTACATACACACGCTAGTCTATTT 58.806 38.462 0.00 0.00 0.00 1.40
3799 4140 6.726230 CACTACATACACACGCTAGTCTATT 58.274 40.000 0.00 0.00 0.00 1.73
3801 4142 4.034858 GCACTACATACACACGCTAGTCTA 59.965 45.833 0.00 0.00 0.00 2.59
3802 4143 3.181499 GCACTACATACACACGCTAGTCT 60.181 47.826 0.00 0.00 0.00 3.24
3804 4145 2.490509 TGCACTACATACACACGCTAGT 59.509 45.455 0.00 0.00 0.00 2.57
3805 4146 3.108881 CTGCACTACATACACACGCTAG 58.891 50.000 0.00 0.00 0.00 3.42
3823 4217 5.351465 ACATACACATGCTAAACAGTACTGC 59.649 40.000 22.90 8.98 35.39 4.40
3831 4225 6.700520 GGGAGTACTACATACACATGCTAAAC 59.299 42.308 7.57 0.00 36.09 2.01
3832 4226 6.610020 AGGGAGTACTACATACACATGCTAAA 59.390 38.462 7.57 0.00 36.09 1.85
3833 4227 6.134055 AGGGAGTACTACATACACATGCTAA 58.866 40.000 7.57 0.00 36.09 3.09
3835 4229 4.547671 AGGGAGTACTACATACACATGCT 58.452 43.478 7.57 0.00 36.09 3.79
3836 4230 4.585162 AGAGGGAGTACTACATACACATGC 59.415 45.833 7.57 0.00 36.09 4.06
3837 4231 5.594725 ACAGAGGGAGTACTACATACACATG 59.405 44.000 7.57 0.00 36.09 3.21
3838 4232 5.767670 ACAGAGGGAGTACTACATACACAT 58.232 41.667 7.57 0.00 36.09 3.21
3839 4233 5.045066 AGACAGAGGGAGTACTACATACACA 60.045 44.000 7.57 0.00 36.09 3.72
3840 4234 5.297278 CAGACAGAGGGAGTACTACATACAC 59.703 48.000 7.57 0.00 36.09 2.90
3841 4235 5.191124 TCAGACAGAGGGAGTACTACATACA 59.809 44.000 7.57 0.00 36.09 2.29
3842 4236 5.682659 TCAGACAGAGGGAGTACTACATAC 58.317 45.833 7.57 0.00 0.00 2.39
3845 4239 4.652679 TTCAGACAGAGGGAGTACTACA 57.347 45.455 7.57 0.00 0.00 2.74
3846 4240 6.532988 AATTTCAGACAGAGGGAGTACTAC 57.467 41.667 0.00 0.00 0.00 2.73
3847 4241 7.411808 AGTAATTTCAGACAGAGGGAGTACTA 58.588 38.462 0.00 0.00 0.00 1.82
3848 4242 6.257586 AGTAATTTCAGACAGAGGGAGTACT 58.742 40.000 0.00 0.00 0.00 2.73
3849 4243 6.532988 AGTAATTTCAGACAGAGGGAGTAC 57.467 41.667 0.00 0.00 0.00 2.73
3850 4244 6.497259 ACAAGTAATTTCAGACAGAGGGAGTA 59.503 38.462 0.00 0.00 0.00 2.59
3851 4245 5.308237 ACAAGTAATTTCAGACAGAGGGAGT 59.692 40.000 0.00 0.00 0.00 3.85
3852 4246 5.799213 ACAAGTAATTTCAGACAGAGGGAG 58.201 41.667 0.00 0.00 0.00 4.30
3853 4247 5.306937 TGACAAGTAATTTCAGACAGAGGGA 59.693 40.000 0.00 0.00 0.00 4.20
3854 4248 5.409826 GTGACAAGTAATTTCAGACAGAGGG 59.590 44.000 0.00 0.00 0.00 4.30
3855 4249 5.991606 TGTGACAAGTAATTTCAGACAGAGG 59.008 40.000 0.00 0.00 0.00 3.69
3856 4250 7.482654 TTGTGACAAGTAATTTCAGACAGAG 57.517 36.000 0.00 0.00 0.00 3.35
3858 4252 8.909708 TTTTTGTGACAAGTAATTTCAGACAG 57.090 30.769 0.00 0.00 0.00 3.51
3859 4253 9.299963 CATTTTTGTGACAAGTAATTTCAGACA 57.700 29.630 0.00 0.00 0.00 3.41
3901 4295 9.574516 AGACAGACACCTATTTTTGTTCTAAAT 57.425 29.630 0.00 0.00 0.00 1.40
3902 4296 8.974060 AGACAGACACCTATTTTTGTTCTAAA 57.026 30.769 0.00 0.00 0.00 1.85
3903 4297 9.706691 CTAGACAGACACCTATTTTTGTTCTAA 57.293 33.333 0.00 0.00 0.00 2.10
3904 4298 9.085645 TCTAGACAGACACCTATTTTTGTTCTA 57.914 33.333 0.00 0.00 0.00 2.10
3905 4299 7.963532 TCTAGACAGACACCTATTTTTGTTCT 58.036 34.615 0.00 0.00 0.00 3.01
3906 4300 8.779354 ATCTAGACAGACACCTATTTTTGTTC 57.221 34.615 0.00 0.00 32.25 3.18
3907 4301 9.654663 GTATCTAGACAGACACCTATTTTTGTT 57.345 33.333 0.00 0.00 32.25 2.83
3908 4302 8.812972 TGTATCTAGACAGACACCTATTTTTGT 58.187 33.333 0.00 0.00 32.25 2.83
3909 4303 9.823647 ATGTATCTAGACAGACACCTATTTTTG 57.176 33.333 0.00 0.00 32.25 2.44
3912 4306 9.201989 TGAATGTATCTAGACAGACACCTATTT 57.798 33.333 0.00 0.00 32.25 1.40
3913 4307 8.768501 TGAATGTATCTAGACAGACACCTATT 57.231 34.615 0.00 0.00 32.25 1.73
3914 4308 8.948401 ATGAATGTATCTAGACAGACACCTAT 57.052 34.615 0.00 0.00 32.25 2.57
3915 4309 8.768501 AATGAATGTATCTAGACAGACACCTA 57.231 34.615 0.00 0.00 32.25 3.08
3916 4310 7.667575 AATGAATGTATCTAGACAGACACCT 57.332 36.000 0.00 0.00 32.25 4.00
3917 4311 8.200792 AGAAATGAATGTATCTAGACAGACACC 58.799 37.037 0.00 0.00 32.25 4.16
3918 4312 9.243637 GAGAAATGAATGTATCTAGACAGACAC 57.756 37.037 0.00 0.00 32.25 3.67
3919 4313 9.194972 AGAGAAATGAATGTATCTAGACAGACA 57.805 33.333 0.00 0.05 32.25 3.41
3936 4330 9.658799 CAGAGGAAATACTTGTTAGAGAAATGA 57.341 33.333 0.00 0.00 0.00 2.57
3937 4331 9.658799 TCAGAGGAAATACTTGTTAGAGAAATG 57.341 33.333 0.00 0.00 0.00 2.32
3938 4332 9.660180 GTCAGAGGAAATACTTGTTAGAGAAAT 57.340 33.333 0.00 0.00 0.00 2.17
3939 4333 8.647796 TGTCAGAGGAAATACTTGTTAGAGAAA 58.352 33.333 0.00 0.00 0.00 2.52
3940 4334 8.190326 TGTCAGAGGAAATACTTGTTAGAGAA 57.810 34.615 0.00 0.00 0.00 2.87
3941 4335 7.776618 TGTCAGAGGAAATACTTGTTAGAGA 57.223 36.000 0.00 0.00 0.00 3.10
3942 4336 8.091449 ACTTGTCAGAGGAAATACTTGTTAGAG 58.909 37.037 0.00 0.00 0.00 2.43
3943 4337 7.963532 ACTTGTCAGAGGAAATACTTGTTAGA 58.036 34.615 0.00 0.00 0.00 2.10
3944 4338 9.877178 ATACTTGTCAGAGGAAATACTTGTTAG 57.123 33.333 0.00 0.00 0.00 2.34
3946 4340 9.574516 AAATACTTGTCAGAGGAAATACTTGTT 57.425 29.630 0.00 0.00 0.00 2.83
3947 4341 9.220767 GAAATACTTGTCAGAGGAAATACTTGT 57.779 33.333 0.00 0.00 0.00 3.16
3948 4342 8.669243 GGAAATACTTGTCAGAGGAAATACTTG 58.331 37.037 0.00 0.00 0.00 3.16
3949 4343 7.549488 CGGAAATACTTGTCAGAGGAAATACTT 59.451 37.037 0.00 0.00 0.00 2.24
3950 4344 7.042335 CGGAAATACTTGTCAGAGGAAATACT 58.958 38.462 0.00 0.00 0.00 2.12
3951 4345 6.258068 CCGGAAATACTTGTCAGAGGAAATAC 59.742 42.308 0.00 0.00 0.00 1.89
3952 4346 6.155565 TCCGGAAATACTTGTCAGAGGAAATA 59.844 38.462 0.00 0.00 0.00 1.40
3953 4347 5.045869 TCCGGAAATACTTGTCAGAGGAAAT 60.046 40.000 0.00 0.00 0.00 2.17
3954 4348 4.285003 TCCGGAAATACTTGTCAGAGGAAA 59.715 41.667 0.00 0.00 0.00 3.13
3955 4349 3.835978 TCCGGAAATACTTGTCAGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
3956 4350 3.194968 GTCCGGAAATACTTGTCAGAGGA 59.805 47.826 5.23 0.00 0.00 3.71
3957 4351 3.522553 GTCCGGAAATACTTGTCAGAGG 58.477 50.000 5.23 0.00 0.00 3.69
3958 4352 3.179830 CGTCCGGAAATACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
3959 4353 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
3960 4354 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
3961 4355 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3962 4356 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3963 4357 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3964 4358 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3965 4359 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3966 4360 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3967 4361 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3968 4362 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3969 4363 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3970 4364 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3971 4365 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
3972 4366 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
3973 4367 1.696063 TAAATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
3974 4368 4.332428 AAATAAATACTCCCTCCGTCCG 57.668 45.455 0.00 0.00 0.00 4.79
3975 4369 6.766429 ACATAAATAAATACTCCCTCCGTCC 58.234 40.000 0.00 0.00 0.00 4.79
3976 4370 7.668492 AGACATAAATAAATACTCCCTCCGTC 58.332 38.462 0.00 0.00 0.00 4.79
4008 4405 7.830739 ACAAGATGTTCTGACTTTTGTTTTCT 58.169 30.769 0.00 0.00 0.00 2.52
4009 4406 9.736023 ATACAAGATGTTCTGACTTTTGTTTTC 57.264 29.630 0.00 0.00 0.00 2.29
4012 4409 9.520204 CAAATACAAGATGTTCTGACTTTTGTT 57.480 29.630 0.00 0.00 0.00 2.83
4014 4411 8.961092 CACAAATACAAGATGTTCTGACTTTTG 58.039 33.333 0.00 0.00 0.00 2.44
4019 4563 6.792250 CGTTCACAAATACAAGATGTTCTGAC 59.208 38.462 0.00 0.00 0.00 3.51
4025 4569 4.695455 CCTCCGTTCACAAATACAAGATGT 59.305 41.667 0.00 0.00 0.00 3.06
4032 4576 1.003928 ACCCCCTCCGTTCACAAATAC 59.996 52.381 0.00 0.00 0.00 1.89
4057 4601 5.143369 AGGAAAAAGAGAGCTGAAATGGTT 58.857 37.500 0.00 0.00 0.00 3.67
4103 4649 5.873164 TGTCGAGAAAAACTAGAATAAGGCC 59.127 40.000 0.00 0.00 32.50 5.19
4114 5082 6.651755 TTTTTAGTCGTGTCGAGAAAAACT 57.348 33.333 14.68 0.00 37.16 2.66
4115 5083 7.887752 AATTTTTAGTCGTGTCGAGAAAAAC 57.112 32.000 18.09 0.00 40.83 2.43
4129 5099 8.789762 TCCTTACCTTGCAAGTAATTTTTAGTC 58.210 33.333 24.35 0.00 0.00 2.59
4244 5253 2.029623 CGGCTGTACCTATGTACCACT 58.970 52.381 5.93 0.00 45.59 4.00
4245 5254 1.753073 ACGGCTGTACCTATGTACCAC 59.247 52.381 0.00 0.00 45.59 4.16
4262 5271 1.992170 GTACTGTGAAGCCTGTACGG 58.008 55.000 0.00 0.00 32.50 4.02
4265 5274 3.822735 AGTAACGTACTGTGAAGCCTGTA 59.177 43.478 0.00 0.00 37.69 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.