Multiple sequence alignment - TraesCS2D01G599500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G599500 chr2D 100.000 7752 0 0 1 7752 650838613 650830862 0.000000e+00 14316
1 TraesCS2D01G599500 chr2D 97.977 1236 24 1 6518 7752 635577190 635575955 0.000000e+00 2143
2 TraesCS2D01G599500 chr2D 97.654 1236 27 2 6518 7752 635532489 635531255 0.000000e+00 2121
3 TraesCS2D01G599500 chr2D 97.577 1238 26 3 6518 7752 635499914 635498678 0.000000e+00 2117
4 TraesCS2D01G599500 chr2D 97.492 1236 27 2 6518 7752 635548249 635547017 0.000000e+00 2108
5 TraesCS2D01G599500 chr2D 87.778 1620 129 30 6166 7752 635441472 635439889 0.000000e+00 1831
6 TraesCS2D01G599500 chr2D 87.400 1619 136 29 6166 7752 635288455 635286873 0.000000e+00 1797
7 TraesCS2D01G599500 chr2D 88.029 1537 123 29 6241 7752 635314392 635312892 0.000000e+00 1762
8 TraesCS2D01G599500 chr2D 89.848 1054 75 14 5246 6276 635492876 635491832 0.000000e+00 1325
9 TraesCS2D01G599500 chr2D 89.773 1056 76 14 5244 6276 635549875 635548829 0.000000e+00 1323
10 TraesCS2D01G599500 chr2D 89.678 1056 77 14 5244 6276 635525445 635524399 0.000000e+00 1317
11 TraesCS2D01G599500 chr2D 89.583 1056 78 14 5244 6276 635534113 635533067 0.000000e+00 1312
12 TraesCS2D01G599500 chr2D 97.143 245 7 0 6272 6516 635548529 635548285 1.560000e-111 414
13 TraesCS2D01G599500 chr2B 92.431 4254 189 47 3125 7339 779836048 779831889 0.000000e+00 5949
14 TraesCS2D01G599500 chr2B 87.346 1620 132 35 6166 7752 779669933 779668354 0.000000e+00 1788
15 TraesCS2D01G599500 chr2B 91.407 1059 62 11 1357 2389 779837904 779836849 0.000000e+00 1424
16 TraesCS2D01G599500 chr2B 90.427 1055 68 15 5246 6276 779822191 779821146 0.000000e+00 1358
17 TraesCS2D01G599500 chr2B 94.708 718 36 2 2412 3128 779836795 779836079 0.000000e+00 1114
18 TraesCS2D01G599500 chr2B 79.074 497 58 28 876 1355 779838849 779838382 4.550000e-77 300
19 TraesCS2D01G599500 chr2B 92.958 71 4 1 5 75 779839706 779839637 1.380000e-17 102
20 TraesCS2D01G599500 chr2A 95.812 2579 81 15 3124 5684 777358342 777360911 0.000000e+00 4139
21 TraesCS2D01G599500 chr2A 92.238 2525 147 31 5260 7752 777442563 777445070 0.000000e+00 3531
22 TraesCS2D01G599500 chr2A 95.593 1702 60 13 5733 7425 777360927 777362622 0.000000e+00 2713
23 TraesCS2D01G599500 chr2A 90.915 1541 100 23 5260 6771 777450904 777452433 0.000000e+00 2034
24 TraesCS2D01G599500 chr2A 95.467 728 31 2 2402 3128 777357586 777358312 0.000000e+00 1160
25 TraesCS2D01G599500 chr2A 89.162 692 49 13 1719 2389 777356856 777357542 0.000000e+00 839
26 TraesCS2D01G599500 chrUn 97.977 1236 24 1 6518 7752 31842433 31843668 0.000000e+00 2143
27 TraesCS2D01G599500 chrUn 97.898 1237 24 2 6518 7752 386188052 386186816 0.000000e+00 2139
28 TraesCS2D01G599500 chrUn 97.896 1236 25 1 6518 7752 31848285 31849520 0.000000e+00 2137
29 TraesCS2D01G599500 chrUn 90.152 1056 70 16 5246 6276 31840807 31841853 0.000000e+00 1343
30 TraesCS2D01G599500 chrUn 90.057 1056 71 16 5246 6276 31846659 31847705 0.000000e+00 1338
31 TraesCS2D01G599500 chrUn 96.735 245 8 0 6272 6516 31848005 31848249 7.240000e-110 409


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G599500 chr2D 650830862 650838613 7751 True 14316.000000 14316 100.000000 1 7752 1 chr2D.!!$R8 7751
1 TraesCS2D01G599500 chr2D 635575955 635577190 1235 True 2143.000000 2143 97.977000 6518 7752 1 chr2D.!!$R7 1234
2 TraesCS2D01G599500 chr2D 635498678 635499914 1236 True 2117.000000 2117 97.577000 6518 7752 1 chr2D.!!$R5 1234
3 TraesCS2D01G599500 chr2D 635439889 635441472 1583 True 1831.000000 1831 87.778000 6166 7752 1 chr2D.!!$R3 1586
4 TraesCS2D01G599500 chr2D 635286873 635288455 1582 True 1797.000000 1797 87.400000 6166 7752 1 chr2D.!!$R1 1586
5 TraesCS2D01G599500 chr2D 635312892 635314392 1500 True 1762.000000 1762 88.029000 6241 7752 1 chr2D.!!$R2 1511
6 TraesCS2D01G599500 chr2D 635531255 635534113 2858 True 1716.500000 2121 93.618500 5244 7752 2 chr2D.!!$R9 2508
7 TraesCS2D01G599500 chr2D 635491832 635492876 1044 True 1325.000000 1325 89.848000 5246 6276 1 chr2D.!!$R4 1030
8 TraesCS2D01G599500 chr2D 635524399 635525445 1046 True 1317.000000 1317 89.678000 5244 6276 1 chr2D.!!$R6 1032
9 TraesCS2D01G599500 chr2D 635547017 635549875 2858 True 1281.666667 2108 94.802667 5244 7752 3 chr2D.!!$R10 2508
10 TraesCS2D01G599500 chr2B 779668354 779669933 1579 True 1788.000000 1788 87.346000 6166 7752 1 chr2B.!!$R1 1586
11 TraesCS2D01G599500 chr2B 779831889 779839706 7817 True 1777.800000 5949 90.115600 5 7339 5 chr2B.!!$R3 7334
12 TraesCS2D01G599500 chr2B 779821146 779822191 1045 True 1358.000000 1358 90.427000 5246 6276 1 chr2B.!!$R2 1030
13 TraesCS2D01G599500 chr2A 777442563 777445070 2507 False 3531.000000 3531 92.238000 5260 7752 1 chr2A.!!$F1 2492
14 TraesCS2D01G599500 chr2A 777356856 777362622 5766 False 2212.750000 4139 94.008500 1719 7425 4 chr2A.!!$F3 5706
15 TraesCS2D01G599500 chr2A 777450904 777452433 1529 False 2034.000000 2034 90.915000 5260 6771 1 chr2A.!!$F2 1511
16 TraesCS2D01G599500 chrUn 386186816 386188052 1236 True 2139.000000 2139 97.898000 6518 7752 1 chrUn.!!$R1 1234
17 TraesCS2D01G599500 chrUn 31840807 31849520 8713 False 1474.000000 2143 94.563400 5246 7752 5 chrUn.!!$F1 2506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1301 0.040646 TTAGAAGAGACGCCCAGGGA 59.959 55.000 10.89 0.0 0.00 4.20 F
1465 2286 0.109412 GTCGGGTGGTCTCGTTAGTG 60.109 60.000 0.00 0.0 0.00 2.74 F
1863 2724 0.461693 CCTTGCTGCTCTCTGTAGGC 60.462 60.000 0.00 0.0 0.00 3.93 F
2171 3032 0.471617 GGGTGCTGGATGAGTATGCT 59.528 55.000 0.00 0.0 0.00 3.79 F
2409 3301 0.871722 TTTGTACTGACACATGCGCC 59.128 50.000 4.18 0.0 34.48 6.53 F
3852 4780 1.273606 TCTGGTCTGTGCTTAGCTCAC 59.726 52.381 5.60 0.0 35.14 3.51 F
4865 5802 0.038801 GCTGCCAGCAAAGAGGTTTC 60.039 55.000 12.82 0.0 41.89 2.78 F
5118 6055 1.135915 ACATCAGCCGTCAGATGAGTC 59.864 52.381 5.82 0.0 43.28 3.36 F
6280 7572 0.107654 ATCTGGGTGCCGCTTACTTC 60.108 55.000 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 3255 0.601576 AAACGGCGCATGTGTCAGTA 60.602 50.000 10.83 0.0 0.00 2.74 R
2406 3298 0.937304 CCACCATAGATCAAACGGCG 59.063 55.000 4.80 4.8 0.00 6.46 R
3133 4026 1.831106 ACAGTATGACCCAATGAGCGA 59.169 47.619 0.00 0.0 39.69 4.93 R
3134 4027 2.315925 ACAGTATGACCCAATGAGCG 57.684 50.000 0.00 0.0 39.69 5.03 R
4400 5332 1.207329 CAGCCCCCGCCTATTAGATAC 59.793 57.143 0.00 0.0 34.57 2.24 R
5169 6107 0.176680 ACTAGGAACATGCTGGAGCG 59.823 55.000 0.00 0.0 45.83 5.03 R
6090 7070 0.329596 GGTCATTCTCCCACAGCCTT 59.670 55.000 0.00 0.0 0.00 4.35 R
6525 7852 0.471617 CCTCCTGCCGATGGATCTTT 59.528 55.000 0.00 0.0 32.56 2.52 R
7479 14698 4.346418 AGACAGGAAACACACTCTTGATCT 59.654 41.667 0.00 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.365472 AGGTTCATAGTTGGGAAATGCC 58.635 45.455 0.00 0.00 0.00 4.40
28 29 3.706086 GGTTCATAGTTGGGAAATGCCAT 59.294 43.478 0.00 0.00 38.95 4.40
34 35 3.175594 AGTTGGGAAATGCCATGATGTT 58.824 40.909 0.00 0.00 38.95 2.71
45 46 5.149973 TGCCATGATGTTTTGCAAACTAT 57.850 34.783 12.39 9.17 0.00 2.12
75 76 4.925646 GCCATGTTTGAAAGAGGTGATTTC 59.074 41.667 0.00 0.00 37.21 2.17
76 77 5.509501 GCCATGTTTGAAAGAGGTGATTTCA 60.510 40.000 0.00 0.00 43.13 2.69
81 82 4.836125 TGAAAGAGGTGATTTCAAGCAC 57.164 40.909 0.00 0.00 42.18 4.40
82 83 4.464008 TGAAAGAGGTGATTTCAAGCACT 58.536 39.130 7.80 0.00 44.29 4.40
83 84 5.620206 TGAAAGAGGTGATTTCAAGCACTA 58.380 37.500 7.80 0.00 44.29 2.74
84 85 6.240894 TGAAAGAGGTGATTTCAAGCACTAT 58.759 36.000 7.80 0.00 44.29 2.12
85 86 7.394016 TGAAAGAGGTGATTTCAAGCACTATA 58.606 34.615 7.80 0.00 44.29 1.31
86 87 7.334421 TGAAAGAGGTGATTTCAAGCACTATAC 59.666 37.037 7.80 0.00 44.29 1.47
87 88 6.299805 AGAGGTGATTTCAAGCACTATACA 57.700 37.500 7.80 0.00 44.29 2.29
88 89 6.711277 AGAGGTGATTTCAAGCACTATACAA 58.289 36.000 7.80 0.00 44.29 2.41
89 90 7.168219 AGAGGTGATTTCAAGCACTATACAAA 58.832 34.615 7.80 0.00 44.29 2.83
90 91 7.831193 AGAGGTGATTTCAAGCACTATACAAAT 59.169 33.333 7.80 0.00 44.29 2.32
91 92 8.353423 AGGTGATTTCAAGCACTATACAAATT 57.647 30.769 7.80 0.00 44.29 1.82
92 93 8.806146 AGGTGATTTCAAGCACTATACAAATTT 58.194 29.630 7.80 0.00 44.29 1.82
99 100 9.571810 TTCAAGCACTATACAAATTTATTGCTG 57.428 29.630 4.79 1.60 39.00 4.41
100 101 7.701924 TCAAGCACTATACAAATTTATTGCTGC 59.298 33.333 4.79 0.00 39.00 5.25
101 102 6.507023 AGCACTATACAAATTTATTGCTGCC 58.493 36.000 0.00 0.00 37.67 4.85
102 103 6.096705 AGCACTATACAAATTTATTGCTGCCA 59.903 34.615 0.00 0.00 37.67 4.92
103 104 6.756074 GCACTATACAAATTTATTGCTGCCAA 59.244 34.615 0.00 0.00 35.01 4.52
104 105 7.277539 GCACTATACAAATTTATTGCTGCCAAA 59.722 33.333 0.00 0.00 34.05 3.28
105 106 8.810427 CACTATACAAATTTATTGCTGCCAAAG 58.190 33.333 0.00 0.00 34.05 2.77
106 107 8.531146 ACTATACAAATTTATTGCTGCCAAAGT 58.469 29.630 0.00 0.00 34.05 2.66
107 108 9.369904 CTATACAAATTTATTGCTGCCAAAGTT 57.630 29.630 0.00 0.00 34.05 2.66
108 109 6.303021 ACAAATTTATTGCTGCCAAAGTTG 57.697 33.333 20.17 20.17 40.88 3.16
109 110 6.054295 ACAAATTTATTGCTGCCAAAGTTGA 58.946 32.000 24.75 0.00 38.71 3.18
110 111 6.711645 ACAAATTTATTGCTGCCAAAGTTGAT 59.288 30.769 24.75 13.93 38.71 2.57
111 112 7.229106 ACAAATTTATTGCTGCCAAAGTTGATT 59.771 29.630 24.75 10.94 38.71 2.57
112 113 7.748691 AATTTATTGCTGCCAAAGTTGATTT 57.251 28.000 0.00 0.00 34.05 2.17
113 114 7.748691 ATTTATTGCTGCCAAAGTTGATTTT 57.251 28.000 0.00 0.00 34.05 1.82
114 115 7.565323 TTTATTGCTGCCAAAGTTGATTTTT 57.435 28.000 0.00 0.00 34.05 1.94
115 116 4.879104 TTGCTGCCAAAGTTGATTTTTG 57.121 36.364 0.00 0.00 35.75 2.44
116 117 3.871485 TGCTGCCAAAGTTGATTTTTGT 58.129 36.364 0.00 0.00 34.51 2.83
117 118 4.260170 TGCTGCCAAAGTTGATTTTTGTT 58.740 34.783 0.00 0.00 34.51 2.83
118 119 4.699257 TGCTGCCAAAGTTGATTTTTGTTT 59.301 33.333 0.00 0.00 34.51 2.83
153 158 7.824289 TCTGGATGAACACTAAATTTAGGTCTG 59.176 37.037 25.25 17.77 35.08 3.51
162 167 9.654663 ACACTAAATTTAGGTCTGTGTAGAATC 57.345 33.333 25.25 0.00 35.74 2.52
163 168 9.653287 CACTAAATTTAGGTCTGTGTAGAATCA 57.347 33.333 25.25 0.00 35.08 2.57
183 188 9.106070 AGAATCAGGTATAAATTGTAAACCGTC 57.894 33.333 0.00 0.00 35.32 4.79
201 206 4.084797 ACCGTCAACAATTTTTAAATGCGC 60.085 37.500 0.00 0.00 0.00 6.09
204 209 5.333107 CGTCAACAATTTTTAAATGCGCAAC 59.667 36.000 17.11 0.07 0.00 4.17
209 214 9.162793 CAACAATTTTTAAATGCGCAACAATTA 57.837 25.926 17.11 9.17 0.00 1.40
221 493 8.925161 ATGCGCAACAATTATTTTTACTACAT 57.075 26.923 17.11 0.00 0.00 2.29
318 590 5.914635 ACTTTTTAAGTGCACGATGAACATG 59.085 36.000 12.01 0.00 41.01 3.21
325 597 5.451908 AGTGCACGATGAACATGTTTTAAG 58.548 37.500 13.36 7.88 0.00 1.85
326 598 4.616802 GTGCACGATGAACATGTTTTAAGG 59.383 41.667 13.36 4.49 0.00 2.69
327 599 4.517075 TGCACGATGAACATGTTTTAAGGA 59.483 37.500 13.36 0.04 0.00 3.36
329 601 5.569059 GCACGATGAACATGTTTTAAGGAAG 59.431 40.000 13.36 2.48 0.00 3.46
330 602 5.569059 CACGATGAACATGTTTTAAGGAAGC 59.431 40.000 13.36 0.00 0.00 3.86
334 606 7.201376 CGATGAACATGTTTTAAGGAAGCAATG 60.201 37.037 13.36 0.00 31.98 2.82
338 610 8.729805 AACATGTTTTAAGGAAGCAATGAAAA 57.270 26.923 4.92 0.00 31.98 2.29
376 648 5.927689 AGCATCGAAGAATTTTCAAATGCAA 59.072 32.000 22.19 0.00 43.58 4.08
444 716 6.982141 AGTAGAACTTGTGTCAAATACGTGAA 59.018 34.615 0.00 0.00 0.00 3.18
445 717 6.287107 AGAACTTGTGTCAAATACGTGAAG 57.713 37.500 0.00 0.00 0.00 3.02
446 718 6.046593 AGAACTTGTGTCAAATACGTGAAGA 58.953 36.000 0.00 0.00 0.00 2.87
521 793 9.705290 ATAAGGTTGAAGAATTTTAAAATGCGT 57.295 25.926 14.04 10.44 0.00 5.24
522 794 7.406799 AGGTTGAAGAATTTTAAAATGCGTG 57.593 32.000 14.04 0.00 0.00 5.34
523 795 7.206687 AGGTTGAAGAATTTTAAAATGCGTGA 58.793 30.769 14.04 2.11 0.00 4.35
524 796 7.708752 AGGTTGAAGAATTTTAAAATGCGTGAA 59.291 29.630 14.04 8.24 0.00 3.18
525 797 8.003784 GGTTGAAGAATTTTAAAATGCGTGAAG 58.996 33.333 14.04 0.00 0.00 3.02
526 798 8.751335 GTTGAAGAATTTTAAAATGCGTGAAGA 58.249 29.630 14.04 0.00 0.00 2.87
527 799 8.864069 TGAAGAATTTTAAAATGCGTGAAGAA 57.136 26.923 14.04 0.00 0.00 2.52
528 800 8.751335 TGAAGAATTTTAAAATGCGTGAAGAAC 58.249 29.630 14.04 0.00 0.00 3.01
529 801 8.641499 AAGAATTTTAAAATGCGTGAAGAACA 57.359 26.923 14.04 0.00 0.00 3.18
530 802 8.816640 AGAATTTTAAAATGCGTGAAGAACAT 57.183 26.923 14.04 0.00 0.00 2.71
531 803 9.260002 AGAATTTTAAAATGCGTGAAGAACATT 57.740 25.926 14.04 0.00 35.59 2.71
532 804 9.862585 GAATTTTAAAATGCGTGAAGAACATTT 57.137 25.926 14.04 0.00 43.84 2.32
542 814 7.987486 TGCGTGAAGAACATTTTAAAAATACG 58.013 30.769 4.44 8.06 0.00 3.06
543 815 7.644551 TGCGTGAAGAACATTTTAAAAATACGT 59.355 29.630 4.44 0.00 0.00 3.57
544 816 8.473796 GCGTGAAGAACATTTTAAAAATACGTT 58.526 29.630 4.44 6.44 0.00 3.99
562 834 9.749490 AAATACGTTATGTATCTTGAAAACACG 57.251 29.630 0.00 0.00 43.04 4.49
563 835 8.692110 ATACGTTATGTATCTTGAAAACACGA 57.308 30.769 0.00 0.00 39.66 4.35
564 836 7.045725 ACGTTATGTATCTTGAAAACACGAG 57.954 36.000 0.00 0.00 0.00 4.18
565 837 6.864685 ACGTTATGTATCTTGAAAACACGAGA 59.135 34.615 0.00 0.00 35.18 4.04
566 838 7.148853 ACGTTATGTATCTTGAAAACACGAGAC 60.149 37.037 0.00 0.00 33.77 3.36
567 839 5.763444 ATGTATCTTGAAAACACGAGACG 57.237 39.130 0.00 0.00 33.77 4.18
568 840 3.985279 TGTATCTTGAAAACACGAGACGG 59.015 43.478 0.00 0.00 33.77 4.79
569 841 2.875087 TCTTGAAAACACGAGACGGA 57.125 45.000 0.00 0.00 0.00 4.69
570 842 2.466846 TCTTGAAAACACGAGACGGAC 58.533 47.619 0.00 0.00 0.00 4.79
571 843 2.159212 TCTTGAAAACACGAGACGGACA 60.159 45.455 0.00 0.00 0.00 4.02
572 844 2.519377 TGAAAACACGAGACGGACAT 57.481 45.000 0.00 0.00 0.00 3.06
573 845 2.828877 TGAAAACACGAGACGGACATT 58.171 42.857 0.00 0.00 0.00 2.71
574 846 3.199677 TGAAAACACGAGACGGACATTT 58.800 40.909 0.00 0.00 0.00 2.32
575 847 3.623960 TGAAAACACGAGACGGACATTTT 59.376 39.130 0.00 0.00 0.00 1.82
576 848 4.809958 TGAAAACACGAGACGGACATTTTA 59.190 37.500 0.00 0.00 0.00 1.52
577 849 4.720530 AAACACGAGACGGACATTTTAC 57.279 40.909 0.00 0.00 0.00 2.01
578 850 3.374220 ACACGAGACGGACATTTTACA 57.626 42.857 0.00 0.00 0.00 2.41
579 851 3.921677 ACACGAGACGGACATTTTACAT 58.078 40.909 0.00 0.00 0.00 2.29
580 852 3.678072 ACACGAGACGGACATTTTACATG 59.322 43.478 0.00 0.00 0.00 3.21
581 853 3.924073 CACGAGACGGACATTTTACATGA 59.076 43.478 0.00 0.00 0.00 3.07
582 854 4.387559 CACGAGACGGACATTTTACATGAA 59.612 41.667 0.00 0.00 0.00 2.57
583 855 4.992319 ACGAGACGGACATTTTACATGAAA 59.008 37.500 0.00 0.00 0.00 2.69
584 856 5.120208 ACGAGACGGACATTTTACATGAAAG 59.880 40.000 0.00 0.00 0.00 2.62
585 857 5.120208 CGAGACGGACATTTTACATGAAAGT 59.880 40.000 0.00 0.00 0.00 2.66
586 858 6.309494 CGAGACGGACATTTTACATGAAAGTA 59.691 38.462 0.00 0.00 0.00 2.24
587 859 7.148705 CGAGACGGACATTTTACATGAAAGTAA 60.149 37.037 0.00 0.00 32.46 2.24
588 860 8.385898 AGACGGACATTTTACATGAAAGTAAA 57.614 30.769 0.00 0.00 40.96 2.01
614 886 6.748658 ACATTCGTGTTTCTAAATGCATGATG 59.251 34.615 0.00 0.00 33.42 3.07
616 888 6.976636 TCGTGTTTCTAAATGCATGATGTA 57.023 33.333 0.00 0.00 0.00 2.29
617 889 7.371126 TCGTGTTTCTAAATGCATGATGTAA 57.629 32.000 0.00 0.00 0.00 2.41
618 890 7.811653 TCGTGTTTCTAAATGCATGATGTAAA 58.188 30.769 0.00 0.00 0.00 2.01
619 891 8.458052 TCGTGTTTCTAAATGCATGATGTAAAT 58.542 29.630 0.00 0.00 0.00 1.40
710 1022 9.606631 AGTTCCACTAATATTCTTCAGATTCAC 57.393 33.333 0.00 0.00 0.00 3.18
711 1023 8.543774 GTTCCACTAATATTCTTCAGATTCACG 58.456 37.037 0.00 0.00 0.00 4.35
712 1024 8.007405 TCCACTAATATTCTTCAGATTCACGA 57.993 34.615 0.00 0.00 0.00 4.35
713 1025 8.138074 TCCACTAATATTCTTCAGATTCACGAG 58.862 37.037 0.00 0.00 0.00 4.18
714 1026 7.095857 CCACTAATATTCTTCAGATTCACGAGC 60.096 40.741 0.00 0.00 0.00 5.03
715 1027 7.436376 CACTAATATTCTTCAGATTCACGAGCA 59.564 37.037 0.00 0.00 0.00 4.26
716 1028 8.147058 ACTAATATTCTTCAGATTCACGAGCAT 58.853 33.333 0.00 0.00 0.00 3.79
717 1029 7.798596 AATATTCTTCAGATTCACGAGCATT 57.201 32.000 0.00 0.00 0.00 3.56
718 1030 7.798596 ATATTCTTCAGATTCACGAGCATTT 57.201 32.000 0.00 0.00 0.00 2.32
719 1031 5.947228 TTCTTCAGATTCACGAGCATTTT 57.053 34.783 0.00 0.00 0.00 1.82
720 1032 5.947228 TCTTCAGATTCACGAGCATTTTT 57.053 34.783 0.00 0.00 0.00 1.94
758 1070 9.936759 AAGTAAATTCTTGAACACCTTTTGAAA 57.063 25.926 0.00 0.00 0.00 2.69
762 1074 9.447157 AAATTCTTGAACACCTTTTGAAATTCA 57.553 25.926 0.00 0.00 0.00 2.57
763 1075 9.617523 AATTCTTGAACACCTTTTGAAATTCAT 57.382 25.926 0.00 0.00 0.00 2.57
792 1104 9.931210 AAAAATAGTTTCACTTACAGTTTCGAG 57.069 29.630 0.00 0.00 0.00 4.04
800 1112 7.962964 TCACTTACAGTTTCGAGAATTCATT 57.037 32.000 8.44 0.00 0.00 2.57
801 1113 7.796838 TCACTTACAGTTTCGAGAATTCATTG 58.203 34.615 8.44 0.00 0.00 2.82
802 1114 7.655732 TCACTTACAGTTTCGAGAATTCATTGA 59.344 33.333 8.44 0.00 0.00 2.57
806 1118 9.611284 TTACAGTTTCGAGAATTCATTGATTTG 57.389 29.630 8.44 1.55 0.00 2.32
807 1119 7.651808 ACAGTTTCGAGAATTCATTGATTTGT 58.348 30.769 8.44 2.15 0.00 2.83
808 1120 8.137437 ACAGTTTCGAGAATTCATTGATTTGTT 58.863 29.630 8.44 0.00 0.00 2.83
925 1241 1.004745 AGGAAATGTGCGTCCCTTCAT 59.995 47.619 0.00 0.00 34.13 2.57
933 1249 2.892425 GTCCCTTCATCGCGCTGG 60.892 66.667 10.42 3.13 0.00 4.85
936 1252 4.845580 CCTTCATCGCGCTGGGCT 62.846 66.667 14.94 0.00 40.44 5.19
953 1269 1.686325 GCTAGGCCCATCAACGAGGA 61.686 60.000 0.00 0.00 0.00 3.71
955 1271 1.048724 TAGGCCCATCAACGAGGAGG 61.049 60.000 0.00 0.00 0.00 4.30
956 1272 2.670148 GGCCCATCAACGAGGAGGT 61.670 63.158 0.00 0.00 0.00 3.85
958 1274 1.617947 GCCCATCAACGAGGAGGTCT 61.618 60.000 0.00 0.00 0.00 3.85
959 1275 0.176680 CCCATCAACGAGGAGGTCTG 59.823 60.000 0.00 0.00 0.00 3.51
960 1276 0.460987 CCATCAACGAGGAGGTCTGC 60.461 60.000 0.00 0.00 0.00 4.26
961 1277 0.803768 CATCAACGAGGAGGTCTGCG 60.804 60.000 0.00 0.00 0.00 5.18
962 1278 2.564553 ATCAACGAGGAGGTCTGCGC 62.565 60.000 0.00 0.00 0.00 6.09
963 1279 2.992114 AACGAGGAGGTCTGCGCT 60.992 61.111 9.73 0.00 0.00 5.92
964 1280 2.995872 AACGAGGAGGTCTGCGCTC 61.996 63.158 9.73 0.00 0.00 5.03
965 1281 4.544689 CGAGGAGGTCTGCGCTCG 62.545 72.222 9.73 2.46 0.00 5.03
967 1283 2.992114 AGGAGGTCTGCGCTCGTT 60.992 61.111 9.73 0.00 0.00 3.85
969 1285 1.226717 GGAGGTCTGCGCTCGTTAG 60.227 63.158 9.73 0.00 0.00 2.34
970 1286 1.654954 GGAGGTCTGCGCTCGTTAGA 61.655 60.000 9.73 0.00 0.00 2.10
973 1289 0.170561 GGTCTGCGCTCGTTAGAAGA 59.829 55.000 9.73 0.00 0.00 2.87
974 1290 1.540407 GTCTGCGCTCGTTAGAAGAG 58.460 55.000 9.73 0.00 38.68 2.85
975 1291 1.130749 GTCTGCGCTCGTTAGAAGAGA 59.869 52.381 9.73 0.00 37.93 3.10
976 1292 1.130749 TCTGCGCTCGTTAGAAGAGAC 59.869 52.381 9.73 0.00 37.93 3.36
977 1293 0.179197 TGCGCTCGTTAGAAGAGACG 60.179 55.000 9.73 2.31 37.93 4.18
979 1295 0.862283 CGCTCGTTAGAAGAGACGCC 60.862 60.000 0.00 0.00 39.03 5.68
980 1296 0.525882 GCTCGTTAGAAGAGACGCCC 60.526 60.000 0.00 0.00 39.03 6.13
981 1297 0.809385 CTCGTTAGAAGAGACGCCCA 59.191 55.000 0.00 0.00 39.03 5.36
982 1298 0.809385 TCGTTAGAAGAGACGCCCAG 59.191 55.000 0.00 0.00 39.03 4.45
983 1299 0.179134 CGTTAGAAGAGACGCCCAGG 60.179 60.000 0.00 0.00 32.11 4.45
984 1300 0.175989 GTTAGAAGAGACGCCCAGGG 59.824 60.000 0.00 0.00 0.00 4.45
985 1301 0.040646 TTAGAAGAGACGCCCAGGGA 59.959 55.000 10.89 0.00 0.00 4.20
986 1302 0.395862 TAGAAGAGACGCCCAGGGAG 60.396 60.000 10.89 9.28 0.00 4.30
987 1303 3.378399 GAAGAGACGCCCAGGGAGC 62.378 68.421 10.89 2.20 0.00 4.70
988 1304 4.704103 AGAGACGCCCAGGGAGCA 62.704 66.667 10.89 0.00 0.00 4.26
989 1305 4.154347 GAGACGCCCAGGGAGCAG 62.154 72.222 10.89 0.00 0.00 4.24
1017 1333 2.361737 GGCCCAGCCTTGTCTTCC 60.362 66.667 0.00 0.00 46.69 3.46
1021 1337 1.078848 CCAGCCTTGTCTTCCTCCG 60.079 63.158 0.00 0.00 0.00 4.63
1085 1401 3.896133 CGCCGCCTCTACGCCTTA 61.896 66.667 0.00 0.00 0.00 2.69
1086 1402 2.735237 GCCGCCTCTACGCCTTAT 59.265 61.111 0.00 0.00 0.00 1.73
1087 1403 1.069258 GCCGCCTCTACGCCTTATT 59.931 57.895 0.00 0.00 0.00 1.40
1088 1404 0.944788 GCCGCCTCTACGCCTTATTC 60.945 60.000 0.00 0.00 0.00 1.75
1089 1405 0.674534 CCGCCTCTACGCCTTATTCT 59.325 55.000 0.00 0.00 0.00 2.40
1090 1406 1.068741 CCGCCTCTACGCCTTATTCTT 59.931 52.381 0.00 0.00 0.00 2.52
1091 1407 2.395654 CGCCTCTACGCCTTATTCTTC 58.604 52.381 0.00 0.00 0.00 2.87
1092 1408 2.223735 CGCCTCTACGCCTTATTCTTCA 60.224 50.000 0.00 0.00 0.00 3.02
1093 1409 3.124560 GCCTCTACGCCTTATTCTTCAC 58.875 50.000 0.00 0.00 0.00 3.18
1094 1410 3.718815 CCTCTACGCCTTATTCTTCACC 58.281 50.000 0.00 0.00 0.00 4.02
1095 1411 3.132289 CCTCTACGCCTTATTCTTCACCA 59.868 47.826 0.00 0.00 0.00 4.17
1101 1417 1.339631 CCTTATTCTTCACCACCGCCA 60.340 52.381 0.00 0.00 0.00 5.69
1103 1419 0.390603 TATTCTTCACCACCGCCACG 60.391 55.000 0.00 0.00 0.00 4.94
1104 1420 4.980805 TCTTCACCACCGCCACGC 62.981 66.667 0.00 0.00 0.00 5.34
1127 1443 2.434843 CCGCCATCTGCTCCTACCA 61.435 63.158 0.00 0.00 38.05 3.25
1130 1446 1.832912 CCATCTGCTCCTACCACCC 59.167 63.158 0.00 0.00 0.00 4.61
1131 1447 1.700042 CCATCTGCTCCTACCACCCC 61.700 65.000 0.00 0.00 0.00 4.95
1183 1501 1.694525 CCCCCTTCTCTTCCCCTCC 60.695 68.421 0.00 0.00 0.00 4.30
1189 1507 0.725133 TTCTCTTCCCCTCCCCATCT 59.275 55.000 0.00 0.00 0.00 2.90
1258 1598 1.616159 GGAGCTCTTCCTATCGCTCT 58.384 55.000 14.64 0.00 46.04 4.09
1262 1602 1.269517 GCTCTTCCTATCGCTCTGTGG 60.270 57.143 0.00 0.00 0.00 4.17
1272 1612 4.463879 CTCTGTGGGAGCGGCCAG 62.464 72.222 2.24 0.00 38.95 4.85
1366 2182 8.450578 TGCTGTATTATCTTTAGATTTGGTGG 57.549 34.615 0.00 0.00 36.05 4.61
1375 2191 5.945784 TCTTTAGATTTGGTGGACTTGATGG 59.054 40.000 0.00 0.00 0.00 3.51
1383 2199 0.994247 TGGACTTGATGGCCTGATGT 59.006 50.000 3.32 0.00 46.68 3.06
1421 2238 7.033185 ACTGCCCGAACAACATTTTATTTATC 58.967 34.615 0.00 0.00 0.00 1.75
1422 2239 6.925211 TGCCCGAACAACATTTTATTTATCA 58.075 32.000 0.00 0.00 0.00 2.15
1423 2240 6.809196 TGCCCGAACAACATTTTATTTATCAC 59.191 34.615 0.00 0.00 0.00 3.06
1424 2241 6.809196 GCCCGAACAACATTTTATTTATCACA 59.191 34.615 0.00 0.00 0.00 3.58
1425 2242 7.329717 GCCCGAACAACATTTTATTTATCACAA 59.670 33.333 0.00 0.00 0.00 3.33
1426 2243 9.364989 CCCGAACAACATTTTATTTATCACAAT 57.635 29.630 0.00 0.00 0.00 2.71
1458 2279 2.567049 CTCGTGTCGGGTGGTCTC 59.433 66.667 0.00 0.00 0.00 3.36
1465 2286 0.109412 GTCGGGTGGTCTCGTTAGTG 60.109 60.000 0.00 0.00 0.00 2.74
1480 2301 5.979993 TCGTTAGTGCCCTGTAAAATATCA 58.020 37.500 0.00 0.00 0.00 2.15
1511 2332 3.542825 TGCAAGCGCACAAGTTAAC 57.457 47.368 11.47 0.00 45.36 2.01
1526 2347 1.330829 GTTAACCTGGATGCTAAGCGC 59.669 52.381 0.00 0.00 39.77 5.92
1548 2369 1.547901 GCCTTAGGGTTCAGCCTGTTT 60.548 52.381 7.87 0.00 37.43 2.83
1554 2375 1.398692 GGTTCAGCCTGTTTGGTTCA 58.601 50.000 0.00 0.00 38.35 3.18
1570 2391 7.821359 TGTTTGGTTCAATTCAATCTTGTTCAA 59.179 29.630 0.00 0.00 0.00 2.69
1628 2451 1.503784 ACCCCAGGTCTAGCTAGCATA 59.496 52.381 18.83 5.65 0.00 3.14
1670 2498 5.593679 TCTGGTACCTATGTCAAGTTAGC 57.406 43.478 14.36 0.00 0.00 3.09
1683 2521 5.221843 TGTCAAGTTAGCAACCAATCCTACT 60.222 40.000 0.00 0.00 0.00 2.57
1697 2535 5.416952 CCAATCCTACTGCTGAATGAAACTT 59.583 40.000 0.00 0.00 0.00 2.66
1761 2599 5.276584 GCTGATCTTGTATGCAGTTTAGTCG 60.277 44.000 0.00 0.00 0.00 4.18
1779 2619 4.319177 AGTCGGAATTTCCAGTTTGAGAG 58.681 43.478 15.58 0.00 35.91 3.20
1784 2624 5.405797 GGAATTTCCAGTTTGAGAGCATTC 58.594 41.667 10.67 0.00 36.28 2.67
1787 2627 7.148018 GGAATTTCCAGTTTGAGAGCATTCATA 60.148 37.037 10.67 0.00 36.28 2.15
1796 2636 9.277783 AGTTTGAGAGCATTCATATTATGGTAC 57.722 33.333 3.89 0.00 34.15 3.34
1799 2639 8.664669 TGAGAGCATTCATATTATGGTACCTA 57.335 34.615 14.36 0.00 34.15 3.08
1832 2672 6.012658 TCCATCATTATTGCTTAATTCGGC 57.987 37.500 0.00 0.00 0.00 5.54
1847 2704 7.575155 GCTTAATTCGGCTTCTTTTTCTACCTT 60.575 37.037 0.00 0.00 0.00 3.50
1863 2724 0.461693 CCTTGCTGCTCTCTGTAGGC 60.462 60.000 0.00 0.00 0.00 3.93
1905 2766 3.343421 GTGGTCGCGCGGAACTTT 61.343 61.111 31.69 0.00 31.85 2.66
2126 2987 1.592131 GTTGTACGTGTCGGCACCA 60.592 57.895 15.72 3.77 42.39 4.17
2171 3032 0.471617 GGGTGCTGGATGAGTATGCT 59.528 55.000 0.00 0.00 0.00 3.79
2270 3131 1.751927 CCTCCATCTGGTGCTTGGC 60.752 63.158 0.00 0.00 36.34 4.52
2291 3152 5.125900 TGGCATGTATGGTTGAGATTTTCAG 59.874 40.000 0.00 0.00 37.07 3.02
2292 3153 5.039333 GCATGTATGGTTGAGATTTTCAGC 58.961 41.667 0.00 0.00 37.07 4.26
2310 3171 6.538945 TTCAGCAAGACCTTTTTAACCTTT 57.461 33.333 0.00 0.00 0.00 3.11
2389 3250 5.393027 GGTGGTGTTTATTTGCCATAGTGAG 60.393 44.000 0.00 0.00 33.20 3.51
2391 3252 5.772672 TGGTGTTTATTTGCCATAGTGAGTT 59.227 36.000 0.00 0.00 0.00 3.01
2392 3253 6.266558 TGGTGTTTATTTGCCATAGTGAGTTT 59.733 34.615 0.00 0.00 0.00 2.66
2394 3255 7.145323 GTGTTTATTTGCCATAGTGAGTTTGT 58.855 34.615 0.00 0.00 0.00 2.83
2395 3256 8.293867 GTGTTTATTTGCCATAGTGAGTTTGTA 58.706 33.333 0.00 0.00 0.00 2.41
2399 3260 4.882842 TGCCATAGTGAGTTTGTACTGA 57.117 40.909 0.00 0.00 33.84 3.41
2406 3298 3.809832 AGTGAGTTTGTACTGACACATGC 59.190 43.478 0.00 0.00 40.49 4.06
2409 3301 0.871722 TTTGTACTGACACATGCGCC 59.128 50.000 4.18 0.00 34.48 6.53
2410 3302 1.288419 TTGTACTGACACATGCGCCG 61.288 55.000 4.18 0.00 34.48 6.46
2428 3320 2.549754 GCCGTTTGATCTATGGTGGATG 59.450 50.000 0.00 0.00 0.00 3.51
2442 3334 1.547372 GTGGATGCCAAGTTGCTGAAT 59.453 47.619 0.00 0.00 34.18 2.57
2450 3342 4.706476 TGCCAAGTTGCTGAATTATTAGCT 59.294 37.500 0.00 0.00 40.52 3.32
2493 3385 1.428869 AGGAAACAGTGTCTGGCTCT 58.571 50.000 0.00 0.00 35.51 4.09
2590 3482 5.801350 TGATGCAAGTTAGACTATGCAAC 57.199 39.130 12.08 10.40 41.64 4.17
2626 3518 3.575630 CTCGTGTACTGTGTGCATACTT 58.424 45.455 15.05 4.49 30.01 2.24
2663 3555 6.127810 TGAATCATGCAATTTCTAGCTCAC 57.872 37.500 0.00 0.00 0.00 3.51
2771 3663 7.415229 GTTAGTGGGTAAGTTTTTCTGAACTG 58.585 38.462 0.00 0.00 39.68 3.16
2959 3852 4.679654 GGCTTTTGTTTCGTAAGTTCCATG 59.320 41.667 0.00 0.00 39.48 3.66
3111 4004 3.181459 GGGAGGTTAGGATGAGAAAGCTC 60.181 52.174 5.22 5.22 43.58 4.09
3333 4260 5.066593 GGTCTTCTGAGTTCAAGGTTCAAT 58.933 41.667 0.00 0.00 0.00 2.57
3698 4625 4.263949 ACTTCTAAAGCCAATAGCCCTGTT 60.264 41.667 0.00 0.00 45.47 3.16
3701 4628 5.822204 TCTAAAGCCAATAGCCCTGTTTTA 58.178 37.500 0.00 0.00 45.47 1.52
3737 4664 4.892934 TCCTTTTCAACTGGCTGTATGTTT 59.107 37.500 0.00 0.00 0.00 2.83
3852 4780 1.273606 TCTGGTCTGTGCTTAGCTCAC 59.726 52.381 5.60 0.00 35.14 3.51
4240 5172 5.443185 TTCTCATGGCTCAGTTTTCTTTG 57.557 39.130 0.00 0.00 0.00 2.77
4316 5248 9.844257 ATTATTGATTTGGGTTTTGTTGAAGAA 57.156 25.926 0.00 0.00 0.00 2.52
4508 5444 2.310052 AGAAGTTAAAGGGCTGCAGGAT 59.690 45.455 17.12 0.00 0.00 3.24
4521 5457 5.336213 GGGCTGCAGGATTACATTTATCATG 60.336 44.000 17.12 0.00 36.99 3.07
4577 5513 1.276705 TGCTGCTCGGTATGTTGGTTA 59.723 47.619 0.00 0.00 0.00 2.85
4690 5626 4.765856 GCAATTATGGATCTGATGGAGCTT 59.234 41.667 0.00 0.00 0.00 3.74
4865 5802 0.038801 GCTGCCAGCAAAGAGGTTTC 60.039 55.000 12.82 0.00 41.89 2.78
4932 5869 6.314896 CAGATCTTCTTCATAACTTCCACCAC 59.685 42.308 0.00 0.00 0.00 4.16
4933 5870 5.560722 TCTTCTTCATAACTTCCACCACA 57.439 39.130 0.00 0.00 0.00 4.17
5118 6055 1.135915 ACATCAGCCGTCAGATGAGTC 59.864 52.381 5.82 0.00 43.28 3.36
5150 6087 3.003480 GCTCGTCTCTGGCATTTTTACT 58.997 45.455 0.00 0.00 0.00 2.24
5164 6101 5.335976 GCATTTTTACTCTTTGGCTACTGCT 60.336 40.000 0.00 0.00 39.59 4.24
5169 6107 4.195225 ACTCTTTGGCTACTGCTTAGTC 57.805 45.455 0.00 0.00 39.59 2.59
5200 6138 4.267349 TGTTCCTAGTGCTCTTGGTTAC 57.733 45.455 14.52 13.65 37.71 2.50
5203 6141 2.832129 TCCTAGTGCTCTTGGTTACCAG 59.168 50.000 14.52 0.00 37.71 4.00
5384 6352 1.503542 CTGACAGCATTGGTTCGCC 59.496 57.895 0.00 0.00 37.92 5.54
5396 6364 1.418637 TGGTTCGCCTTTGTTCTAGGT 59.581 47.619 0.00 0.00 38.36 3.08
5418 6386 2.093235 AGCAACTAGGGCTGTTGATCTC 60.093 50.000 17.55 5.04 45.27 2.75
5422 6390 3.995636 ACTAGGGCTGTTGATCTCCTTA 58.004 45.455 0.00 0.00 0.00 2.69
5534 6508 9.236006 CTGGATTGCCTGTTAGCTTATTATAAT 57.764 33.333 2.97 2.97 34.31 1.28
5684 6659 3.252458 GTGCCGTATTTTGTGAGTCCTTT 59.748 43.478 0.00 0.00 0.00 3.11
5685 6660 3.252215 TGCCGTATTTTGTGAGTCCTTTG 59.748 43.478 0.00 0.00 0.00 2.77
5691 6666 4.513406 TTTTGTGAGTCCTTTGTACCCT 57.487 40.909 0.00 0.00 0.00 4.34
5703 6678 3.823281 TTGTACCCTTCGTGTTCTCAA 57.177 42.857 0.00 0.00 0.00 3.02
5742 6720 8.464770 TGAATGCTTTAACAAATATGTCTTGC 57.535 30.769 0.00 0.00 39.40 4.01
6090 7070 2.104622 TGCCAATTCTCCGATGCAGATA 59.895 45.455 0.00 0.00 0.00 1.98
6280 7572 0.107654 ATCTGGGTGCCGCTTACTTC 60.108 55.000 0.00 0.00 0.00 3.01
6321 7613 1.589716 GCTGTGACCATGCAAGGGAC 61.590 60.000 13.45 9.02 43.46 4.46
6517 7809 0.698238 CCTGAATCCACCCACCAAGA 59.302 55.000 0.00 0.00 0.00 3.02
6520 7812 1.780309 TGAATCCACCCACCAAGAAGT 59.220 47.619 0.00 0.00 0.00 3.01
6525 7852 3.050089 TCCACCCACCAAGAAGTCTTAA 58.950 45.455 0.00 0.00 34.28 1.85
6560 7887 4.074526 GGCAGCGAGGCAGAGTGA 62.075 66.667 1.18 0.00 43.51 3.41
6708 8035 7.921786 ATCCAGTTAGTCAAATCAAAATCGA 57.078 32.000 0.00 0.00 0.00 3.59
6732 8059 1.037493 ACTGTACGTGCTCCACTTCA 58.963 50.000 4.97 0.00 31.34 3.02
6972 14155 5.801531 TCAGGCGTAGGACAATATACATT 57.198 39.130 0.00 0.00 0.00 2.71
7479 14698 8.185505 GCCGATAAGTTTCCAATAACAACAATA 58.814 33.333 0.00 0.00 0.00 1.90
7500 14719 4.696479 AGATCAAGAGTGTGTTTCCTGT 57.304 40.909 0.00 0.00 0.00 4.00
7537 14757 4.527509 ACATGTTTTCACACCAACAACA 57.472 36.364 0.00 0.00 36.50 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.152831 GCATTTCCCAACTATGAACCTTAGTT 59.847 38.462 0.00 0.00 39.80 2.24
1 2 5.652452 GCATTTCCCAACTATGAACCTTAGT 59.348 40.000 0.00 0.00 0.00 2.24
3 4 4.953579 GGCATTTCCCAACTATGAACCTTA 59.046 41.667 0.00 0.00 0.00 2.69
9 10 4.248174 TCATGGCATTTCCCAACTATGA 57.752 40.909 0.00 0.00 38.61 2.15
28 29 8.836413 GGCTATAGTATAGTTTGCAAAACATCA 58.164 33.333 14.67 0.00 0.00 3.07
34 35 8.746052 AACATGGCTATAGTATAGTTTGCAAA 57.254 30.769 16.76 8.05 0.00 3.68
45 46 7.047891 CACCTCTTTCAAACATGGCTATAGTA 58.952 38.462 0.84 0.00 0.00 1.82
80 81 8.531146 ACTTTGGCAGCAATAAATTTGTATAGT 58.469 29.630 0.00 0.00 0.00 2.12
81 82 8.931385 ACTTTGGCAGCAATAAATTTGTATAG 57.069 30.769 0.00 0.00 0.00 1.31
82 83 9.149225 CAACTTTGGCAGCAATAAATTTGTATA 57.851 29.630 0.00 0.00 0.00 1.47
83 84 7.877097 TCAACTTTGGCAGCAATAAATTTGTAT 59.123 29.630 0.00 0.00 30.66 2.29
84 85 7.212976 TCAACTTTGGCAGCAATAAATTTGTA 58.787 30.769 0.00 0.00 30.66 2.41
85 86 6.054295 TCAACTTTGGCAGCAATAAATTTGT 58.946 32.000 0.00 0.00 30.66 2.83
86 87 6.542574 TCAACTTTGGCAGCAATAAATTTG 57.457 33.333 0.00 4.13 0.00 2.32
87 88 7.748691 AATCAACTTTGGCAGCAATAAATTT 57.251 28.000 0.00 0.00 0.00 1.82
88 89 7.748691 AAATCAACTTTGGCAGCAATAAATT 57.251 28.000 0.00 0.00 0.00 1.82
89 90 7.748691 AAAATCAACTTTGGCAGCAATAAAT 57.251 28.000 0.00 0.00 0.00 1.40
90 91 7.066766 ACAAAAATCAACTTTGGCAGCAATAAA 59.933 29.630 0.00 0.00 37.96 1.40
91 92 6.541641 ACAAAAATCAACTTTGGCAGCAATAA 59.458 30.769 0.00 0.00 37.96 1.40
92 93 6.054295 ACAAAAATCAACTTTGGCAGCAATA 58.946 32.000 0.00 0.00 37.96 1.90
93 94 4.883006 ACAAAAATCAACTTTGGCAGCAAT 59.117 33.333 0.00 0.00 37.96 3.56
94 95 4.260170 ACAAAAATCAACTTTGGCAGCAA 58.740 34.783 0.00 0.00 37.96 3.91
95 96 3.871485 ACAAAAATCAACTTTGGCAGCA 58.129 36.364 0.00 0.00 37.96 4.41
96 97 4.880886 AACAAAAATCAACTTTGGCAGC 57.119 36.364 0.00 0.00 37.96 5.25
97 98 9.786105 AAATAAAACAAAAATCAACTTTGGCAG 57.214 25.926 0.00 0.00 37.96 4.85
113 114 9.528018 GTGTTCATCCAGAAGAAAATAAAACAA 57.472 29.630 0.00 0.00 36.78 2.83
114 115 8.912988 AGTGTTCATCCAGAAGAAAATAAAACA 58.087 29.630 0.00 0.00 36.78 2.83
138 139 9.877178 CTGATTCTACACAGACCTAAATTTAGT 57.123 33.333 20.99 11.07 36.38 2.24
142 147 7.259088 ACCTGATTCTACACAGACCTAAATT 57.741 36.000 0.00 0.00 36.38 1.82
162 167 7.808672 TGTTGACGGTTTACAATTTATACCTG 58.191 34.615 0.00 0.00 0.00 4.00
163 168 7.982761 TGTTGACGGTTTACAATTTATACCT 57.017 32.000 0.00 0.00 0.00 3.08
180 185 4.999484 TGCGCATTTAAAAATTGTTGACG 58.001 34.783 5.66 0.00 0.00 4.35
183 188 7.606132 ATTGTTGCGCATTTAAAAATTGTTG 57.394 28.000 12.75 0.00 0.00 3.33
305 577 5.041951 TCCTTAAAACATGTTCATCGTGC 57.958 39.130 12.39 0.00 36.60 5.34
306 578 5.569059 GCTTCCTTAAAACATGTTCATCGTG 59.431 40.000 12.39 0.00 38.86 4.35
308 580 5.698832 TGCTTCCTTAAAACATGTTCATCG 58.301 37.500 12.39 1.49 0.00 3.84
334 606 8.722342 TCGATGCTACTTACAAAAATGTTTTC 57.278 30.769 0.00 0.00 0.00 2.29
338 610 7.667043 TCTTCGATGCTACTTACAAAAATGT 57.333 32.000 0.00 0.00 0.00 2.71
345 617 7.899178 TGAAAATTCTTCGATGCTACTTACA 57.101 32.000 0.00 0.00 0.00 2.41
346 618 9.774742 ATTTGAAAATTCTTCGATGCTACTTAC 57.225 29.630 0.00 0.00 0.00 2.34
353 625 5.766702 TGCATTTGAAAATTCTTCGATGC 57.233 34.783 19.82 19.82 39.20 3.91
357 629 7.629130 TCCTTTTTGCATTTGAAAATTCTTCG 58.371 30.769 0.00 0.00 0.00 3.79
420 692 6.758593 TCACGTATTTGACACAAGTTCTAC 57.241 37.500 0.00 0.00 0.00 2.59
421 693 7.204604 TCTTCACGTATTTGACACAAGTTCTA 58.795 34.615 0.00 0.00 0.00 2.10
422 694 6.046593 TCTTCACGTATTTGACACAAGTTCT 58.953 36.000 0.00 0.00 0.00 3.01
495 767 9.705290 ACGCATTTTAAAATTCTTCAACCTTAT 57.295 25.926 10.77 0.00 0.00 1.73
496 768 8.973378 CACGCATTTTAAAATTCTTCAACCTTA 58.027 29.630 10.77 0.00 0.00 2.69
497 769 7.708752 TCACGCATTTTAAAATTCTTCAACCTT 59.291 29.630 10.77 0.00 0.00 3.50
498 770 7.206687 TCACGCATTTTAAAATTCTTCAACCT 58.793 30.769 10.77 0.00 0.00 3.50
499 771 7.401484 TCACGCATTTTAAAATTCTTCAACC 57.599 32.000 10.77 0.00 0.00 3.77
500 772 8.751335 TCTTCACGCATTTTAAAATTCTTCAAC 58.249 29.630 10.77 0.00 0.00 3.18
501 773 8.864069 TCTTCACGCATTTTAAAATTCTTCAA 57.136 26.923 10.77 1.93 0.00 2.69
502 774 8.751335 GTTCTTCACGCATTTTAAAATTCTTCA 58.249 29.630 10.77 0.00 0.00 3.02
503 775 8.751335 TGTTCTTCACGCATTTTAAAATTCTTC 58.249 29.630 10.77 0.99 0.00 2.87
504 776 8.641499 TGTTCTTCACGCATTTTAAAATTCTT 57.359 26.923 10.77 0.00 0.00 2.52
505 777 8.816640 ATGTTCTTCACGCATTTTAAAATTCT 57.183 26.923 10.77 0.00 0.00 2.40
506 778 9.862585 AAATGTTCTTCACGCATTTTAAAATTC 57.137 25.926 10.77 5.63 39.04 2.17
516 788 8.635124 CGTATTTTTAAAATGTTCTTCACGCAT 58.365 29.630 12.62 0.00 0.00 4.73
517 789 7.644551 ACGTATTTTTAAAATGTTCTTCACGCA 59.355 29.630 12.62 0.00 0.00 5.24
518 790 7.988547 ACGTATTTTTAAAATGTTCTTCACGC 58.011 30.769 12.62 0.00 0.00 5.34
536 808 9.749490 CGTGTTTTCAAGATACATAACGTATTT 57.251 29.630 0.00 0.00 41.06 1.40
537 809 9.142515 TCGTGTTTTCAAGATACATAACGTATT 57.857 29.630 0.00 0.00 41.06 1.89
538 810 8.692110 TCGTGTTTTCAAGATACATAACGTAT 57.308 30.769 0.00 0.00 43.79 3.06
539 811 8.022550 TCTCGTGTTTTCAAGATACATAACGTA 58.977 33.333 0.00 0.00 37.64 3.57
540 812 6.864685 TCTCGTGTTTTCAAGATACATAACGT 59.135 34.615 0.00 0.00 37.64 3.99
541 813 7.164858 GTCTCGTGTTTTCAAGATACATAACG 58.835 38.462 0.00 0.00 37.64 3.18
542 814 7.164858 CGTCTCGTGTTTTCAAGATACATAAC 58.835 38.462 0.00 0.00 37.64 1.89
543 815 6.309494 CCGTCTCGTGTTTTCAAGATACATAA 59.691 38.462 0.00 0.00 37.64 1.90
544 816 5.803461 CCGTCTCGTGTTTTCAAGATACATA 59.197 40.000 0.00 0.00 37.64 2.29
545 817 4.625742 CCGTCTCGTGTTTTCAAGATACAT 59.374 41.667 0.00 0.00 37.64 2.29
546 818 3.985279 CCGTCTCGTGTTTTCAAGATACA 59.015 43.478 0.00 0.00 37.64 2.29
547 819 4.089636 GTCCGTCTCGTGTTTTCAAGATAC 59.910 45.833 0.00 0.00 37.64 2.24
548 820 4.232221 GTCCGTCTCGTGTTTTCAAGATA 58.768 43.478 0.00 0.00 37.64 1.98
549 821 3.057734 GTCCGTCTCGTGTTTTCAAGAT 58.942 45.455 0.00 0.00 37.64 2.40
550 822 2.159212 TGTCCGTCTCGTGTTTTCAAGA 60.159 45.455 0.00 0.00 36.88 3.02
551 823 2.198406 TGTCCGTCTCGTGTTTTCAAG 58.802 47.619 0.00 0.00 0.00 3.02
552 824 2.296831 TGTCCGTCTCGTGTTTTCAA 57.703 45.000 0.00 0.00 0.00 2.69
553 825 2.519377 ATGTCCGTCTCGTGTTTTCA 57.481 45.000 0.00 0.00 0.00 2.69
554 826 3.872560 AAATGTCCGTCTCGTGTTTTC 57.127 42.857 0.00 0.00 0.00 2.29
555 827 4.571580 TGTAAAATGTCCGTCTCGTGTTTT 59.428 37.500 0.00 0.00 0.00 2.43
556 828 4.121317 TGTAAAATGTCCGTCTCGTGTTT 58.879 39.130 0.00 0.00 0.00 2.83
557 829 3.719924 TGTAAAATGTCCGTCTCGTGTT 58.280 40.909 0.00 0.00 0.00 3.32
558 830 3.374220 TGTAAAATGTCCGTCTCGTGT 57.626 42.857 0.00 0.00 0.00 4.49
559 831 3.924073 TCATGTAAAATGTCCGTCTCGTG 59.076 43.478 0.00 0.00 0.00 4.35
560 832 4.182693 TCATGTAAAATGTCCGTCTCGT 57.817 40.909 0.00 0.00 0.00 4.18
561 833 5.120208 ACTTTCATGTAAAATGTCCGTCTCG 59.880 40.000 0.00 0.00 0.00 4.04
562 834 6.481954 ACTTTCATGTAAAATGTCCGTCTC 57.518 37.500 0.00 0.00 0.00 3.36
563 835 7.972832 TTACTTTCATGTAAAATGTCCGTCT 57.027 32.000 0.00 0.00 30.48 4.18
564 836 8.898792 GTTTTACTTTCATGTAAAATGTCCGTC 58.101 33.333 13.32 0.00 46.89 4.79
565 837 8.407064 TGTTTTACTTTCATGTAAAATGTCCGT 58.593 29.630 13.32 0.00 46.89 4.69
566 838 8.789881 TGTTTTACTTTCATGTAAAATGTCCG 57.210 30.769 13.32 0.00 46.89 4.79
572 844 9.790389 ACACGAATGTTTTACTTTCATGTAAAA 57.210 25.926 8.05 8.05 44.84 1.52
589 861 6.252967 TCATGCATTTAGAAACACGAATGT 57.747 33.333 0.00 0.00 42.46 2.71
590 862 6.748658 ACATCATGCATTTAGAAACACGAATG 59.251 34.615 0.00 0.00 33.44 2.67
591 863 6.855836 ACATCATGCATTTAGAAACACGAAT 58.144 32.000 0.00 0.00 0.00 3.34
592 864 6.252967 ACATCATGCATTTAGAAACACGAA 57.747 33.333 0.00 0.00 0.00 3.85
593 865 5.878332 ACATCATGCATTTAGAAACACGA 57.122 34.783 0.00 0.00 0.00 4.35
594 866 8.619146 ATTTACATCATGCATTTAGAAACACG 57.381 30.769 0.00 0.00 0.00 4.49
685 997 8.543774 CGTGAATCTGAAGAATATTAGTGGAAC 58.456 37.037 0.00 0.00 0.00 3.62
686 998 8.474831 TCGTGAATCTGAAGAATATTAGTGGAA 58.525 33.333 0.00 0.00 0.00 3.53
687 999 8.007405 TCGTGAATCTGAAGAATATTAGTGGA 57.993 34.615 0.00 0.00 0.00 4.02
688 1000 7.095857 GCTCGTGAATCTGAAGAATATTAGTGG 60.096 40.741 0.00 0.00 0.00 4.00
689 1001 7.436376 TGCTCGTGAATCTGAAGAATATTAGTG 59.564 37.037 0.00 0.00 0.00 2.74
690 1002 7.492524 TGCTCGTGAATCTGAAGAATATTAGT 58.507 34.615 0.00 0.00 0.00 2.24
691 1003 7.936950 TGCTCGTGAATCTGAAGAATATTAG 57.063 36.000 0.00 0.00 0.00 1.73
692 1004 8.893219 AATGCTCGTGAATCTGAAGAATATTA 57.107 30.769 0.00 0.00 0.00 0.98
693 1005 7.798596 AATGCTCGTGAATCTGAAGAATATT 57.201 32.000 0.00 0.00 0.00 1.28
694 1006 7.798596 AAATGCTCGTGAATCTGAAGAATAT 57.201 32.000 0.00 0.00 0.00 1.28
695 1007 7.615582 AAAATGCTCGTGAATCTGAAGAATA 57.384 32.000 0.00 0.00 0.00 1.75
696 1008 6.506500 AAAATGCTCGTGAATCTGAAGAAT 57.493 33.333 0.00 0.00 0.00 2.40
697 1009 5.947228 AAAATGCTCGTGAATCTGAAGAA 57.053 34.783 0.00 0.00 0.00 2.52
698 1010 5.947228 AAAAATGCTCGTGAATCTGAAGA 57.053 34.783 0.00 0.00 0.00 2.87
732 1044 9.936759 TTTCAAAAGGTGTTCAAGAATTTACTT 57.063 25.926 0.00 0.00 0.00 2.24
736 1048 9.447157 TGAATTTCAAAAGGTGTTCAAGAATTT 57.553 25.926 0.00 0.00 0.00 1.82
737 1049 9.617523 ATGAATTTCAAAAGGTGTTCAAGAATT 57.382 25.926 2.68 0.00 0.00 2.17
781 1093 8.783093 ACAAATCAATGAATTCTCGAAACTGTA 58.217 29.630 7.05 0.00 0.00 2.74
783 1095 8.511465 AACAAATCAATGAATTCTCGAAACTG 57.489 30.769 7.05 0.24 0.00 3.16
900 1213 1.234821 GGACGCACATTTCCTGTTCA 58.765 50.000 0.00 0.00 35.29 3.18
901 1214 0.521735 GGGACGCACATTTCCTGTTC 59.478 55.000 0.00 0.00 35.29 3.18
903 1216 0.110486 AAGGGACGCACATTTCCTGT 59.890 50.000 0.00 0.00 39.20 4.00
907 1220 1.062587 CGATGAAGGGACGCACATTTC 59.937 52.381 0.00 0.00 0.00 2.17
936 1252 1.048724 CCTCCTCGTTGATGGGCCTA 61.049 60.000 4.53 0.00 0.00 3.93
953 1269 0.171455 CTTCTAACGAGCGCAGACCT 59.829 55.000 11.47 0.00 0.00 3.85
955 1271 1.130749 TCTCTTCTAACGAGCGCAGAC 59.869 52.381 11.47 0.00 0.00 3.51
956 1272 1.130749 GTCTCTTCTAACGAGCGCAGA 59.869 52.381 11.47 0.00 0.00 4.26
958 1274 0.179197 CGTCTCTTCTAACGAGCGCA 60.179 55.000 11.47 0.00 41.29 6.09
959 1275 1.465209 GCGTCTCTTCTAACGAGCGC 61.465 60.000 0.00 0.00 42.16 5.92
960 1276 0.862283 GGCGTCTCTTCTAACGAGCG 60.862 60.000 0.00 0.00 41.29 5.03
961 1277 0.525882 GGGCGTCTCTTCTAACGAGC 60.526 60.000 0.00 0.00 41.29 5.03
962 1278 0.809385 TGGGCGTCTCTTCTAACGAG 59.191 55.000 0.00 0.00 41.29 4.18
963 1279 0.809385 CTGGGCGTCTCTTCTAACGA 59.191 55.000 0.00 0.00 41.29 3.85
964 1280 0.179134 CCTGGGCGTCTCTTCTAACG 60.179 60.000 0.00 0.00 41.68 3.18
965 1281 0.175989 CCCTGGGCGTCTCTTCTAAC 59.824 60.000 0.00 0.00 0.00 2.34
967 1283 0.395862 CTCCCTGGGCGTCTCTTCTA 60.396 60.000 8.22 0.00 0.00 2.10
969 1285 2.896443 CTCCCTGGGCGTCTCTTC 59.104 66.667 8.22 0.00 0.00 2.87
970 1286 3.394836 GCTCCCTGGGCGTCTCTT 61.395 66.667 8.22 0.00 0.00 2.85
1001 1317 1.377856 GAGGAAGACAAGGCTGGGC 60.378 63.158 0.00 0.00 0.00 5.36
1008 1324 0.321122 AAGCAGCGGAGGAAGACAAG 60.321 55.000 0.00 0.00 0.00 3.16
1010 1326 1.293498 GAAGCAGCGGAGGAAGACA 59.707 57.895 0.00 0.00 0.00 3.41
1017 1333 4.821589 GACGGGGAAGCAGCGGAG 62.822 72.222 0.00 0.00 0.00 4.63
1075 1391 3.118884 GGTGGTGAAGAATAAGGCGTAGA 60.119 47.826 0.00 0.00 0.00 2.59
1076 1392 3.195661 GGTGGTGAAGAATAAGGCGTAG 58.804 50.000 0.00 0.00 0.00 3.51
1077 1393 2.417651 CGGTGGTGAAGAATAAGGCGTA 60.418 50.000 0.00 0.00 0.00 4.42
1078 1394 1.674817 CGGTGGTGAAGAATAAGGCGT 60.675 52.381 0.00 0.00 0.00 5.68
1079 1395 1.006832 CGGTGGTGAAGAATAAGGCG 58.993 55.000 0.00 0.00 0.00 5.52
1080 1396 0.733150 GCGGTGGTGAAGAATAAGGC 59.267 55.000 0.00 0.00 0.00 4.35
1081 1397 1.339631 TGGCGGTGGTGAAGAATAAGG 60.340 52.381 0.00 0.00 0.00 2.69
1082 1398 1.737793 GTGGCGGTGGTGAAGAATAAG 59.262 52.381 0.00 0.00 0.00 1.73
1083 1399 1.816074 GTGGCGGTGGTGAAGAATAA 58.184 50.000 0.00 0.00 0.00 1.40
1084 1400 0.390603 CGTGGCGGTGGTGAAGAATA 60.391 55.000 0.00 0.00 0.00 1.75
1085 1401 1.671054 CGTGGCGGTGGTGAAGAAT 60.671 57.895 0.00 0.00 0.00 2.40
1086 1402 2.280524 CGTGGCGGTGGTGAAGAA 60.281 61.111 0.00 0.00 0.00 2.52
1087 1403 4.980805 GCGTGGCGGTGGTGAAGA 62.981 66.667 0.00 0.00 0.00 2.87
1111 1427 1.147153 GGTGGTAGGAGCAGATGGC 59.853 63.158 0.00 0.00 45.30 4.40
1113 1429 1.700042 GGGGGTGGTAGGAGCAGATG 61.700 65.000 0.00 0.00 0.00 2.90
1114 1430 1.384643 GGGGGTGGTAGGAGCAGAT 60.385 63.158 0.00 0.00 0.00 2.90
1164 1482 2.286502 AGGGGAAGAGAAGGGGGC 60.287 66.667 0.00 0.00 0.00 5.80
1174 1492 2.761465 GCCAGATGGGGAGGGGAAG 61.761 68.421 0.12 0.00 37.04 3.46
1183 1501 4.883354 GCGGGGAAGCCAGATGGG 62.883 72.222 0.12 0.00 40.85 4.00
1272 1612 4.133796 GGGCATCAAACCTGCGCC 62.134 66.667 4.18 0.00 44.25 6.53
1274 1614 2.676121 TGGGGCATCAAACCTGCG 60.676 61.111 0.00 0.00 40.59 5.18
1305 1645 3.304559 CAGTTCATCAACGAGGAATCGAC 59.695 47.826 4.44 0.00 34.92 4.20
1355 1695 3.620488 GCCATCAAGTCCACCAAATCTA 58.380 45.455 0.00 0.00 0.00 1.98
1363 2179 1.340405 ACATCAGGCCATCAAGTCCAC 60.340 52.381 5.01 0.00 0.00 4.02
1365 2181 1.340405 ACACATCAGGCCATCAAGTCC 60.340 52.381 5.01 0.00 0.00 3.85
1366 2182 2.119801 ACACATCAGGCCATCAAGTC 57.880 50.000 5.01 0.00 0.00 3.01
1391 2207 2.203422 TTGTTCGGGCAGTTGGGG 60.203 61.111 0.00 0.00 0.00 4.96
1392 2208 1.178534 ATGTTGTTCGGGCAGTTGGG 61.179 55.000 0.00 0.00 0.00 4.12
1393 2209 0.673437 AATGTTGTTCGGGCAGTTGG 59.327 50.000 0.00 0.00 0.00 3.77
1397 2214 7.009174 GTGATAAATAAAATGTTGTTCGGGCAG 59.991 37.037 0.00 0.00 0.00 4.85
1399 2216 6.809196 TGTGATAAATAAAATGTTGTTCGGGC 59.191 34.615 0.00 0.00 0.00 6.13
1421 2238 1.987770 GCGGATGCTGTTTTCATTGTG 59.012 47.619 0.00 0.00 38.39 3.33
1422 2239 2.352503 GCGGATGCTGTTTTCATTGT 57.647 45.000 0.00 0.00 38.39 2.71
1443 2264 1.855213 TAACGAGACCACCCGACACG 61.855 60.000 0.00 0.00 0.00 4.49
1446 2267 0.109412 CACTAACGAGACCACCCGAC 60.109 60.000 0.00 0.00 0.00 4.79
1451 2272 0.389948 CAGGGCACTAACGAGACCAC 60.390 60.000 0.00 0.00 0.00 4.16
1458 2279 5.815740 ACTGATATTTTACAGGGCACTAACG 59.184 40.000 0.00 0.00 38.30 3.18
1465 2286 5.648092 AGTTCACACTGATATTTTACAGGGC 59.352 40.000 0.00 0.00 40.71 5.19
1480 2301 1.265095 CGCTTGCAATCAGTTCACACT 59.735 47.619 0.00 0.00 0.00 3.55
1526 2347 2.124695 GGCTGAACCCTAAGGCCG 60.125 66.667 0.00 0.00 36.11 6.13
1548 2369 6.279882 GGTTGAACAAGATTGAATTGAACCA 58.720 36.000 10.38 0.00 0.00 3.67
1554 2375 7.839680 AAGTAGGGTTGAACAAGATTGAATT 57.160 32.000 0.00 0.00 0.00 2.17
1583 2404 9.780186 GTACAGGCCTAGAAGATTAAATTGTAT 57.220 33.333 3.98 0.00 0.00 2.29
1670 2498 4.264253 TCATTCAGCAGTAGGATTGGTTG 58.736 43.478 0.00 0.00 0.00 3.77
1683 2521 3.960102 ACTCCCAAAAGTTTCATTCAGCA 59.040 39.130 0.00 0.00 0.00 4.41
1761 2599 5.047802 TGAATGCTCTCAAACTGGAAATTCC 60.048 40.000 4.79 4.79 36.96 3.01
1787 2627 7.526041 TGGAAGCATTTGATAGGTACCATAAT 58.474 34.615 15.94 4.29 0.00 1.28
1810 2650 6.017400 AGCCGAATTAAGCAATAATGATGG 57.983 37.500 2.34 0.00 34.41 3.51
1832 2672 4.759183 AGAGCAGCAAGGTAGAAAAAGAAG 59.241 41.667 0.00 0.00 0.00 2.85
1847 2704 2.888111 CGCCTACAGAGAGCAGCA 59.112 61.111 0.00 0.00 0.00 4.41
1905 2766 2.191908 GCGGCCACCATGTCCATA 59.808 61.111 2.24 0.00 0.00 2.74
2171 3032 0.685785 TGGCAACCTTGTGCTTGGAA 60.686 50.000 0.00 0.00 44.31 3.53
2270 3131 6.198650 TGCTGAAAATCTCAACCATACATG 57.801 37.500 0.00 0.00 32.17 3.21
2291 3152 5.068591 TCCAGAAAGGTTAAAAAGGTCTTGC 59.931 40.000 0.00 0.00 39.02 4.01
2292 3153 6.709018 TCCAGAAAGGTTAAAAAGGTCTTG 57.291 37.500 0.00 0.00 39.02 3.02
2310 3171 5.423290 TCTTTGCTAGTTGATCAGATCCAGA 59.577 40.000 8.00 0.00 0.00 3.86
2369 3230 7.145323 ACAAACTCACTATGGCAAATAAACAC 58.855 34.615 0.00 0.00 0.00 3.32
2371 3232 8.512138 AGTACAAACTCACTATGGCAAATAAAC 58.488 33.333 0.00 0.00 0.00 2.01
2389 3250 1.399727 GGCGCATGTGTCAGTACAAAC 60.400 52.381 10.83 0.00 37.36 2.93
2391 3252 1.288419 CGGCGCATGTGTCAGTACAA 61.288 55.000 10.83 0.00 37.36 2.41
2392 3253 1.736282 CGGCGCATGTGTCAGTACA 60.736 57.895 10.83 0.00 34.63 2.90
2394 3255 0.601576 AAACGGCGCATGTGTCAGTA 60.602 50.000 10.83 0.00 0.00 2.74
2395 3256 1.891919 AAACGGCGCATGTGTCAGT 60.892 52.632 10.83 7.07 0.00 3.41
2399 3260 0.955428 AGATCAAACGGCGCATGTGT 60.955 50.000 10.83 0.00 0.00 3.72
2406 3298 0.937304 CCACCATAGATCAAACGGCG 59.063 55.000 4.80 4.80 0.00 6.46
2409 3301 2.549754 GGCATCCACCATAGATCAAACG 59.450 50.000 0.00 0.00 0.00 3.60
2410 3302 3.554934 TGGCATCCACCATAGATCAAAC 58.445 45.455 0.00 0.00 33.75 2.93
2428 3320 5.254339 AGCTAATAATTCAGCAACTTGGC 57.746 39.130 8.74 0.00 40.36 4.52
2472 3364 2.972713 AGAGCCAGACACTGTTTCCTTA 59.027 45.455 0.00 0.00 0.00 2.69
2473 3365 1.771255 AGAGCCAGACACTGTTTCCTT 59.229 47.619 0.00 0.00 0.00 3.36
2476 3368 2.246719 ACAGAGCCAGACACTGTTTC 57.753 50.000 0.00 0.00 46.55 2.78
2581 3473 5.355350 GCAGGTGAATTAGAAGTTGCATAGT 59.645 40.000 0.00 0.00 0.00 2.12
2590 3482 3.589988 ACACGAGCAGGTGAATTAGAAG 58.410 45.455 13.29 0.00 40.38 2.85
2626 3518 7.920160 TGCATGATTCATTTGTAGACTACAA 57.080 32.000 21.54 21.54 46.13 2.41
2663 3555 6.364165 CCTTCTGTATGTGCATCAAAACAAAG 59.636 38.462 0.00 6.45 0.00 2.77
2724 3616 6.345096 ACCAAATACTTTTGCATGTTAGCT 57.655 33.333 0.00 0.00 40.77 3.32
2907 3800 6.177610 CAGTAAAACCTTAAGCACCATCCTA 58.822 40.000 0.00 0.00 0.00 2.94
2959 3852 7.739498 TGGAATTTGACCAACTAGTACTTTC 57.261 36.000 0.00 0.00 34.25 2.62
3057 3950 6.910536 AGAGCATAATTTTCTAGTTCCACG 57.089 37.500 0.00 0.00 0.00 4.94
3128 4021 1.974265 TGACCCAATGAGCGAACAAA 58.026 45.000 0.00 0.00 0.00 2.83
3129 4022 2.198827 ATGACCCAATGAGCGAACAA 57.801 45.000 0.00 0.00 0.00 2.83
3132 4025 2.236146 ACAGTATGACCCAATGAGCGAA 59.764 45.455 0.00 0.00 39.69 4.70
3133 4026 1.831106 ACAGTATGACCCAATGAGCGA 59.169 47.619 0.00 0.00 39.69 4.93
3134 4027 2.315925 ACAGTATGACCCAATGAGCG 57.684 50.000 0.00 0.00 39.69 5.03
3333 4260 3.576550 GTCAAACAAGGGGGCAATTAGAA 59.423 43.478 0.00 0.00 0.00 2.10
3701 4628 7.230309 CCAGTTGAAAAGGAAGAAGAAAGAGAT 59.770 37.037 0.00 0.00 0.00 2.75
3786 4713 2.413142 GCAGCTTCACCATCCCTGC 61.413 63.158 0.00 0.00 41.57 4.85
3878 4806 3.845781 AAAGAGTGAGAACTGAAGGCA 57.154 42.857 0.00 0.00 0.00 4.75
4304 5236 9.248291 GCTACAATTGATCTTTCTTCAACAAAA 57.752 29.630 13.59 0.00 36.02 2.44
4394 5326 5.209659 CCCCCGCCTATTAGATACTAGAAT 58.790 45.833 0.00 0.00 0.00 2.40
4400 5332 1.207329 CAGCCCCCGCCTATTAGATAC 59.793 57.143 0.00 0.00 34.57 2.24
4521 5457 7.713764 AAAAGATGTGCAGAACCAATTTAAC 57.286 32.000 0.00 0.00 0.00 2.01
4529 5465 4.681744 TGAACAAAAAGATGTGCAGAACC 58.318 39.130 0.00 0.00 33.84 3.62
4577 5513 4.097286 ACTTGCGGTCAATTTGTAAGTTGT 59.903 37.500 0.00 0.00 0.00 3.32
4690 5626 1.133945 TGCTGCAGTTTGACTAACCCA 60.134 47.619 16.64 0.00 37.46 4.51
4731 5668 5.065914 TCATATTTATCAAGCTGACCAGGC 58.934 41.667 0.00 0.00 0.00 4.85
4865 5802 5.603170 AGCAAAGGAAATGGGATGTTATG 57.397 39.130 0.00 0.00 0.00 1.90
4973 5910 4.077108 TCACAGTATCAACTCGTAGGTGT 58.923 43.478 0.00 0.00 33.77 4.16
5118 6055 3.243234 CCAGAGACGAGCTAGGTTATGTG 60.243 52.174 0.00 0.00 0.00 3.21
5150 6087 2.674177 GCGACTAAGCAGTAGCCAAAGA 60.674 50.000 0.00 0.00 44.86 2.52
5164 6101 1.405526 GGAACATGCTGGAGCGACTAA 60.406 52.381 0.00 0.00 45.83 2.24
5169 6107 0.176680 ACTAGGAACATGCTGGAGCG 59.823 55.000 0.00 0.00 45.83 5.03
5200 6138 2.095768 CACCAAGCATTTCACGTACTGG 60.096 50.000 0.00 0.00 0.00 4.00
5203 6141 2.916111 CACACCAAGCATTTCACGTAC 58.084 47.619 0.00 0.00 0.00 3.67
5258 6212 4.794241 CGCTAAAGTGCACGCGCC 62.794 66.667 20.80 0.00 39.11 6.53
5264 6218 4.430007 CAGTATAGAACCGCTAAAGTGCA 58.570 43.478 0.00 0.00 31.66 4.57
5384 6352 5.420409 CCCTAGTTGCTACCTAGAACAAAG 58.580 45.833 0.00 0.00 35.01 2.77
5396 6364 3.107601 AGATCAACAGCCCTAGTTGCTA 58.892 45.455 3.90 0.00 44.50 3.49
5418 6386 5.238214 GCTTATTCAAGGCATCTCACTAAGG 59.762 44.000 0.00 0.00 31.96 2.69
5422 6390 4.500499 AGCTTATTCAAGGCATCTCACT 57.500 40.909 0.00 0.00 31.96 3.41
5498 6466 1.443194 GCAATCCAGTGTTGCTGCG 60.443 57.895 10.39 0.00 46.34 5.18
5534 6508 3.568443 TGGACGCCCATACATAGTTAGA 58.432 45.455 0.00 0.00 37.58 2.10
5666 6641 5.106830 GGGTACAAAGGACTCACAAAATACG 60.107 44.000 0.00 0.00 0.00 3.06
5684 6659 4.345859 AATTGAGAACACGAAGGGTACA 57.654 40.909 0.00 0.00 0.00 2.90
5685 6660 4.753107 TGAAATTGAGAACACGAAGGGTAC 59.247 41.667 0.00 0.00 0.00 3.34
5691 6666 7.479980 ACAAAGATTGAAATTGAGAACACGAA 58.520 30.769 0.00 0.00 0.00 3.85
6090 7070 0.329596 GGTCATTCTCCCACAGCCTT 59.670 55.000 0.00 0.00 0.00 4.35
6280 7572 1.241165 TGCTCAAACATGTCCTGCAG 58.759 50.000 6.78 6.78 0.00 4.41
6321 7613 1.234615 CCCACAGCAAGTACCCGTTG 61.235 60.000 0.00 0.00 0.00 4.10
6517 7809 4.843728 TGCCGATGGATCTTTTAAGACTT 58.156 39.130 0.00 0.00 37.98 3.01
6520 7812 3.454447 TCCTGCCGATGGATCTTTTAAGA 59.546 43.478 0.00 0.00 39.78 2.10
6525 7852 0.471617 CCTCCTGCCGATGGATCTTT 59.528 55.000 0.00 0.00 32.56 2.52
6560 7887 8.585471 AATGATTTCAACATCTACCAGACAAT 57.415 30.769 0.00 0.00 0.00 2.71
6708 8035 2.037251 AGTGGAGCACGTACAGTTCATT 59.963 45.455 0.00 0.00 39.64 2.57
6732 8059 2.665165 TCCATGCAAAACTGAACTGGT 58.335 42.857 0.00 0.00 0.00 4.00
6972 14155 4.415596 AGGCCATATTTCAACTTTGGTGA 58.584 39.130 5.01 0.00 0.00 4.02
7479 14698 4.346418 AGACAGGAAACACACTCTTGATCT 59.654 41.667 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.