Multiple sequence alignment - TraesCS2D01G599400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G599400 chr2D 100.000 4457 0 0 1 4457 650781163 650776707 0.000000e+00 8231.0
1 TraesCS2D01G599400 chr2D 89.370 2728 230 36 913 3607 647836755 647839455 0.000000e+00 3376.0
2 TraesCS2D01G599400 chr2D 84.862 218 14 8 3602 3804 647839688 647839901 7.560000e-48 202.0
3 TraesCS2D01G599400 chr2D 83.158 95 7 5 248 333 647860006 647860100 1.330000e-10 78.7
4 TraesCS2D01G599400 chr2A 87.901 2959 234 61 930 3834 772438464 772435576 0.000000e+00 3367.0
5 TraesCS2D01G599400 chr2A 83.902 528 54 13 3854 4352 772435521 772434996 4.030000e-130 475.0
6 TraesCS2D01G599400 chr2A 82.452 416 58 10 1483 1894 480059633 480060037 2.550000e-92 350.0
7 TraesCS2D01G599400 chr2A 80.964 415 58 14 1484 1887 138149192 138148788 4.330000e-80 309.0
8 TraesCS2D01G599400 chr2A 80.630 413 59 14 1486 1887 88302196 88302598 2.610000e-77 300.0
9 TraesCS2D01G599400 chr2A 80.630 413 59 16 1486 1887 695427207 695426805 2.610000e-77 300.0
10 TraesCS2D01G599400 chr2A 79.845 129 17 5 4224 4352 772375296 772375415 7.940000e-13 86.1
11 TraesCS2D01G599400 chr2B 86.375 2789 249 69 913 3647 787980582 787977871 0.000000e+00 2924.0
12 TraesCS2D01G599400 chr2B 91.467 1957 129 21 1920 3853 787957654 787959595 0.000000e+00 2654.0
13 TraesCS2D01G599400 chr2B 87.045 1320 126 25 622 1917 787956247 787957545 0.000000e+00 1448.0
14 TraesCS2D01G599400 chr2B 95.862 290 9 2 3656 3942 787977597 787977308 2.430000e-127 466.0
15 TraesCS2D01G599400 chr2B 81.959 582 69 21 3854 4407 787959646 787960219 1.130000e-125 460.0
16 TraesCS2D01G599400 chr2B 87.374 198 12 7 148 332 787955860 787956057 9.710000e-52 215.0
17 TraesCS2D01G599400 chr2B 95.506 89 4 0 1057 1145 787982851 787982763 4.650000e-30 143.0
18 TraesCS2D01G599400 chr2B 78.423 241 23 15 4162 4375 787977290 787977052 3.620000e-26 130.0
19 TraesCS2D01G599400 chr2B 86.585 82 11 0 276 357 787981105 787981024 1.710000e-14 91.6
20 TraesCS2D01G599400 chr2B 90.164 61 3 2 4350 4407 787982753 787982693 4.780000e-10 76.8
21 TraesCS2D01G599400 chr3A 80.668 419 57 18 1484 1887 514371430 514371839 2.010000e-78 303.0
22 TraesCS2D01G599400 chr1A 97.368 38 0 1 607 643 521871710 521871747 3.720000e-06 63.9
23 TraesCS2D01G599400 chr7A 92.683 41 3 0 603 643 625529858 625529898 4.810000e-05 60.2
24 TraesCS2D01G599400 chr1B 92.683 41 3 0 603 643 229959896 229959936 4.810000e-05 60.2
25 TraesCS2D01G599400 chr6A 94.444 36 2 0 608 643 76920838 76920803 6.230000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G599400 chr2D 650776707 650781163 4456 True 8231.000000 8231 100.000000 1 4457 1 chr2D.!!$R1 4456
1 TraesCS2D01G599400 chr2D 647836755 647839901 3146 False 1789.000000 3376 87.116000 913 3804 2 chr2D.!!$F2 2891
2 TraesCS2D01G599400 chr2A 772434996 772438464 3468 True 1921.000000 3367 85.901500 930 4352 2 chr2A.!!$R3 3422
3 TraesCS2D01G599400 chr2B 787955860 787960219 4359 False 1194.250000 2654 86.961250 148 4407 4 chr2B.!!$F1 4259
4 TraesCS2D01G599400 chr2B 787977052 787982851 5799 True 638.566667 2924 88.819167 276 4407 6 chr2B.!!$R1 4131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 1848 0.034756 AAATTTTGGCCCGCCTTCAC 59.965 50.0 7.35 0.0 36.94 3.18 F
468 2072 0.036732 TGCAGCTCGGTGGAATTTCT 59.963 50.0 0.00 0.0 0.00 2.52 F
1959 3806 0.111832 TGACTAGTGACCACGGACCT 59.888 55.0 0.00 0.0 36.20 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 3457 0.182299 AAATAGCAGCTCCAGCCTCC 59.818 55.000 0.0 0.0 43.38 4.30 R
2010 3870 0.698238 CCAAAGTGTGATCCCCCAGA 59.302 55.000 0.0 0.0 0.00 3.86 R
3623 5771 1.070601 GCCAAACATCACAGGGCTTTT 59.929 47.619 0.0 0.0 41.39 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.809619 GGCGCATGCGAGTGACTAA 60.810 57.895 41.98 0.00 44.10 2.24
22 23 1.345176 GCGCATGCGAGTGACTAAC 59.655 57.895 41.98 18.00 42.83 2.34
23 24 1.999051 CGCATGCGAGTGACTAACC 59.001 57.895 35.82 0.00 42.83 2.85
24 25 0.735978 CGCATGCGAGTGACTAACCA 60.736 55.000 35.82 0.00 42.83 3.67
25 26 1.002366 GCATGCGAGTGACTAACCAG 58.998 55.000 0.00 0.00 0.00 4.00
26 27 1.673033 GCATGCGAGTGACTAACCAGT 60.673 52.381 0.00 0.00 37.87 4.00
27 28 2.416836 GCATGCGAGTGACTAACCAGTA 60.417 50.000 0.00 0.00 34.21 2.74
29 30 1.816835 TGCGAGTGACTAACCAGTAGG 59.183 52.381 0.00 0.00 42.21 3.18
31 32 2.688958 GCGAGTGACTAACCAGTAGGAT 59.311 50.000 0.00 0.00 38.69 3.24
33 34 4.381718 GCGAGTGACTAACCAGTAGGATTT 60.382 45.833 0.00 0.00 38.69 2.17
35 36 5.326200 AGTGACTAACCAGTAGGATTTCG 57.674 43.478 0.00 0.00 38.69 3.46
36 37 4.159879 AGTGACTAACCAGTAGGATTTCGG 59.840 45.833 0.00 0.00 38.69 4.30
37 38 3.118884 TGACTAACCAGTAGGATTTCGGC 60.119 47.826 0.00 0.00 38.69 5.54
38 39 2.169978 ACTAACCAGTAGGATTTCGGCC 59.830 50.000 0.00 0.00 38.69 6.13
39 40 0.255033 AACCAGTAGGATTTCGGCCC 59.745 55.000 0.00 0.00 38.69 5.80
41 42 0.179045 CCAGTAGGATTTCGGCCCAG 60.179 60.000 0.00 0.00 36.89 4.45
43 44 1.526225 GTAGGATTTCGGCCCAGGC 60.526 63.158 0.00 0.00 41.06 4.85
53 54 2.116125 GCCCAGGCCTGTCAGTTT 59.884 61.111 30.63 0.00 34.56 2.66
54 55 1.973812 GCCCAGGCCTGTCAGTTTC 60.974 63.158 30.63 7.99 34.56 2.78
55 56 1.455849 CCCAGGCCTGTCAGTTTCA 59.544 57.895 30.63 0.00 0.00 2.69
56 57 0.890996 CCCAGGCCTGTCAGTTTCAC 60.891 60.000 30.63 0.00 0.00 3.18
58 59 0.532862 CAGGCCTGTCAGTTTCACGT 60.533 55.000 25.53 0.00 0.00 4.49
60 61 1.507141 GGCCTGTCAGTTTCACGTGG 61.507 60.000 17.00 0.00 0.00 4.94
61 62 0.814010 GCCTGTCAGTTTCACGTGGT 60.814 55.000 17.00 0.00 0.00 4.16
62 63 1.663695 CCTGTCAGTTTCACGTGGTT 58.336 50.000 17.00 0.00 0.00 3.67
63 64 1.597663 CCTGTCAGTTTCACGTGGTTC 59.402 52.381 17.00 6.21 0.00 3.62
65 66 2.276201 TGTCAGTTTCACGTGGTTCTG 58.724 47.619 17.00 19.09 0.00 3.02
66 67 1.597663 GTCAGTTTCACGTGGTTCTGG 59.402 52.381 17.00 1.76 0.00 3.86
67 68 0.944386 CAGTTTCACGTGGTTCTGGG 59.056 55.000 17.00 0.00 0.00 4.45
76 77 4.759205 GGTTCTGGGCCGGCCAAT 62.759 66.667 44.46 0.00 37.98 3.16
77 78 2.679996 GTTCTGGGCCGGCCAATT 60.680 61.111 44.46 0.00 37.98 2.32
79 80 2.917897 TTCTGGGCCGGCCAATTCT 61.918 57.895 44.46 0.00 37.98 2.40
80 81 1.567208 TTCTGGGCCGGCCAATTCTA 61.567 55.000 44.46 22.40 37.98 2.10
81 82 1.077068 CTGGGCCGGCCAATTCTAA 60.077 57.895 44.46 19.93 37.98 2.10
82 83 0.682855 CTGGGCCGGCCAATTCTAAA 60.683 55.000 44.46 18.56 37.98 1.85
83 84 0.968393 TGGGCCGGCCAATTCTAAAC 60.968 55.000 44.46 25.06 37.98 2.01
84 85 0.683179 GGGCCGGCCAATTCTAAACT 60.683 55.000 44.46 0.00 37.98 2.66
85 86 0.455815 GGCCGGCCAATTCTAAACTG 59.544 55.000 40.73 0.00 35.81 3.16
87 88 1.132453 GCCGGCCAATTCTAAACTGTC 59.868 52.381 18.11 0.00 0.00 3.51
89 90 1.743394 CGGCCAATTCTAAACTGTCCC 59.257 52.381 2.24 0.00 0.00 4.46
90 91 1.743394 GGCCAATTCTAAACTGTCCCG 59.257 52.381 0.00 0.00 0.00 5.14
91 92 2.617021 GGCCAATTCTAAACTGTCCCGA 60.617 50.000 0.00 0.00 0.00 5.14
92 93 3.279434 GCCAATTCTAAACTGTCCCGAT 58.721 45.455 0.00 0.00 0.00 4.18
93 94 4.448210 GCCAATTCTAAACTGTCCCGATA 58.552 43.478 0.00 0.00 0.00 2.92
94 95 4.879545 GCCAATTCTAAACTGTCCCGATAA 59.120 41.667 0.00 0.00 0.00 1.75
95 96 5.007724 GCCAATTCTAAACTGTCCCGATAAG 59.992 44.000 0.00 0.00 0.00 1.73
96 97 5.527582 CCAATTCTAAACTGTCCCGATAAGG 59.472 44.000 0.00 0.00 40.63 2.69
97 98 3.814005 TCTAAACTGTCCCGATAAGGC 57.186 47.619 0.00 0.00 39.21 4.35
98 99 3.371965 TCTAAACTGTCCCGATAAGGCT 58.628 45.455 0.00 0.00 39.21 4.58
99 100 2.403252 AAACTGTCCCGATAAGGCTG 57.597 50.000 0.00 0.00 39.21 4.85
100 101 0.107654 AACTGTCCCGATAAGGCTGC 60.108 55.000 0.00 0.00 39.21 5.25
101 102 1.227674 CTGTCCCGATAAGGCTGCC 60.228 63.158 11.65 11.65 39.21 4.85
102 103 1.689233 TGTCCCGATAAGGCTGCCT 60.689 57.895 17.22 17.22 39.21 4.75
103 104 1.069935 GTCCCGATAAGGCTGCCTC 59.930 63.158 23.61 9.11 39.21 4.70
104 105 2.029666 CCCGATAAGGCTGCCTCG 59.970 66.667 23.61 20.66 39.21 4.63
127 128 2.280186 GTGGATCGATCCCACCGC 60.280 66.667 35.72 18.53 46.30 5.68
128 129 3.546543 TGGATCGATCCCACCGCC 61.547 66.667 35.72 15.10 46.59 6.13
129 130 4.664677 GGATCGATCCCACCGCCG 62.665 72.222 30.80 0.00 41.20 6.46
130 131 4.664677 GATCGATCCCACCGCCGG 62.665 72.222 14.76 0.00 0.00 6.13
176 177 3.552294 CGTATTTCCTCCGAGCTTCTTTC 59.448 47.826 0.00 0.00 0.00 2.62
183 184 2.643044 CGAGCTTCTTTCTCGTCCG 58.357 57.895 4.44 0.00 45.86 4.79
189 190 1.885163 TTCTTTCTCGTCCGCCCCTC 61.885 60.000 0.00 0.00 0.00 4.30
233 234 1.299648 CCGCAAATCCAGTGGAGGA 59.700 57.895 18.69 0.00 43.01 3.71
242 243 1.039785 CCAGTGGAGGATCAGCTCGA 61.040 60.000 1.68 0.00 36.25 4.04
272 273 0.106217 GACCAGAGAGGAGGAGGGAG 60.106 65.000 0.00 0.00 41.22 4.30
275 276 0.396974 CAGAGAGGAGGAGGGAGGTG 60.397 65.000 0.00 0.00 0.00 4.00
279 280 3.403558 GGAGGAGGGAGGTGGCAC 61.404 72.222 9.70 9.70 0.00 5.01
283 1755 3.775654 GAGGGAGGTGGCACTCGG 61.776 72.222 18.45 0.00 38.39 4.63
327 1799 4.451150 CGCCGGCTGCTTCAGGTA 62.451 66.667 26.68 0.00 38.05 3.08
328 1800 2.046314 GCCGGCTGCTTCAGGTAA 60.046 61.111 22.15 0.00 36.87 2.85
329 1801 2.399356 GCCGGCTGCTTCAGGTAAC 61.399 63.158 22.15 0.00 36.87 2.50
330 1802 1.003839 CCGGCTGCTTCAGGTAACA 60.004 57.895 0.00 0.00 41.41 2.41
331 1803 0.392998 CCGGCTGCTTCAGGTAACAT 60.393 55.000 0.00 0.00 41.41 2.71
332 1804 0.729116 CGGCTGCTTCAGGTAACATG 59.271 55.000 0.00 0.00 41.41 3.21
333 1805 0.453390 GGCTGCTTCAGGTAACATGC 59.547 55.000 0.00 0.00 41.41 4.06
334 1806 0.453390 GCTGCTTCAGGTAACATGCC 59.547 55.000 0.00 0.00 41.41 4.40
335 1807 1.825090 CTGCTTCAGGTAACATGCCA 58.175 50.000 0.00 0.00 41.41 4.92
336 1808 2.161855 CTGCTTCAGGTAACATGCCAA 58.838 47.619 0.00 0.00 41.41 4.52
337 1809 1.885887 TGCTTCAGGTAACATGCCAAC 59.114 47.619 0.00 0.00 41.41 3.77
338 1810 2.162681 GCTTCAGGTAACATGCCAACT 58.837 47.619 0.00 0.00 41.41 3.16
339 1811 2.095059 GCTTCAGGTAACATGCCAACTG 60.095 50.000 5.95 5.95 41.41 3.16
340 1812 1.533625 TCAGGTAACATGCCAACTGC 58.466 50.000 7.21 0.00 39.33 4.40
349 1821 3.788766 GCCAACTGCACTACCGCG 61.789 66.667 0.00 0.00 40.77 6.46
350 1822 3.118454 CCAACTGCACTACCGCGG 61.118 66.667 26.86 26.86 44.25 6.46
351 1823 3.118454 CAACTGCACTACCGCGGG 61.118 66.667 31.76 15.62 42.90 6.13
352 1824 3.622826 AACTGCACTACCGCGGGT 61.623 61.111 31.76 16.40 42.90 5.28
353 1825 2.277591 AACTGCACTACCGCGGGTA 61.278 57.895 31.76 17.74 42.90 3.69
354 1826 2.202703 CTGCACTACCGCGGGTAC 60.203 66.667 31.76 13.98 37.09 3.34
355 1827 2.677524 TGCACTACCGCGGGTACT 60.678 61.111 31.76 11.18 37.09 2.73
356 1828 2.202703 GCACTACCGCGGGTACTG 60.203 66.667 31.76 18.92 37.09 2.74
357 1829 2.703798 GCACTACCGCGGGTACTGA 61.704 63.158 31.76 6.02 37.09 3.41
358 1830 1.885157 CACTACCGCGGGTACTGAA 59.115 57.895 31.76 4.36 37.09 3.02
359 1831 0.244450 CACTACCGCGGGTACTGAAA 59.756 55.000 31.76 2.87 37.09 2.69
360 1832 1.134907 CACTACCGCGGGTACTGAAAT 60.135 52.381 31.76 7.29 37.09 2.17
361 1833 1.551883 ACTACCGCGGGTACTGAAATT 59.448 47.619 31.76 6.43 37.09 1.82
362 1834 2.027837 ACTACCGCGGGTACTGAAATTT 60.028 45.455 31.76 5.83 37.09 1.82
363 1835 1.900245 ACCGCGGGTACTGAAATTTT 58.100 45.000 31.76 0.00 36.31 1.82
364 1836 1.538075 ACCGCGGGTACTGAAATTTTG 59.462 47.619 31.76 0.00 36.31 2.44
365 1837 1.135517 CCGCGGGTACTGAAATTTTGG 60.136 52.381 20.10 0.00 36.31 3.28
366 1838 1.731098 CGCGGGTACTGAAATTTTGGC 60.731 52.381 0.00 0.00 36.31 4.52
367 1839 1.403647 GCGGGTACTGAAATTTTGGCC 60.404 52.381 0.00 0.00 36.31 5.36
368 1840 1.203758 CGGGTACTGAAATTTTGGCCC 59.796 52.381 0.00 4.93 36.31 5.80
369 1841 1.203758 GGGTACTGAAATTTTGGCCCG 59.796 52.381 0.00 0.00 0.00 6.13
370 1842 1.403647 GGTACTGAAATTTTGGCCCGC 60.404 52.381 0.00 0.00 0.00 6.13
371 1843 0.892063 TACTGAAATTTTGGCCCGCC 59.108 50.000 0.00 0.00 0.00 6.13
372 1844 0.831711 ACTGAAATTTTGGCCCGCCT 60.832 50.000 7.35 0.00 36.94 5.52
373 1845 0.321346 CTGAAATTTTGGCCCGCCTT 59.679 50.000 7.35 0.00 36.94 4.35
374 1846 0.320050 TGAAATTTTGGCCCGCCTTC 59.680 50.000 7.35 2.70 36.94 3.46
375 1847 0.320050 GAAATTTTGGCCCGCCTTCA 59.680 50.000 7.35 0.00 36.94 3.02
376 1848 0.034756 AAATTTTGGCCCGCCTTCAC 59.965 50.000 7.35 0.00 36.94 3.18
377 1849 1.118356 AATTTTGGCCCGCCTTCACA 61.118 50.000 7.35 0.00 36.94 3.58
378 1850 1.815817 ATTTTGGCCCGCCTTCACAC 61.816 55.000 7.35 0.00 36.94 3.82
379 1851 4.966787 TTGGCCCGCCTTCACACC 62.967 66.667 7.35 0.00 36.94 4.16
381 1853 4.740822 GGCCCGCCTTCACACCAT 62.741 66.667 0.00 0.00 0.00 3.55
382 1854 2.676471 GCCCGCCTTCACACCATT 60.676 61.111 0.00 0.00 0.00 3.16
394 1866 2.741517 TCACACCATTGTAACATCAGCG 59.258 45.455 0.00 0.00 33.30 5.18
402 1874 5.241506 CCATTGTAACATCAGCGGGATTTAT 59.758 40.000 0.00 0.00 32.57 1.40
458 2062 2.679837 ACATCAAACTATTGCAGCTCGG 59.320 45.455 0.00 0.00 36.45 4.63
467 2071 0.881118 TTGCAGCTCGGTGGAATTTC 59.119 50.000 0.00 0.00 0.00 2.17
468 2072 0.036732 TGCAGCTCGGTGGAATTTCT 59.963 50.000 0.00 0.00 0.00 2.52
470 2074 1.936547 GCAGCTCGGTGGAATTTCTAG 59.063 52.381 0.00 0.00 0.00 2.43
497 2109 4.905269 CACACTATGTGCTGAATGATGTG 58.095 43.478 0.00 0.00 41.89 3.21
498 2110 4.632688 CACACTATGTGCTGAATGATGTGA 59.367 41.667 0.00 0.00 41.89 3.58
499 2111 5.122711 CACACTATGTGCTGAATGATGTGAA 59.877 40.000 0.00 0.00 41.89 3.18
500 2112 5.884232 ACACTATGTGCTGAATGATGTGAAT 59.116 36.000 0.00 0.00 36.98 2.57
501 2113 6.037940 ACACTATGTGCTGAATGATGTGAATC 59.962 38.462 0.00 0.00 36.98 2.52
502 2114 6.260271 CACTATGTGCTGAATGATGTGAATCT 59.740 38.462 0.00 0.00 0.00 2.40
503 2115 6.827251 ACTATGTGCTGAATGATGTGAATCTT 59.173 34.615 0.00 0.00 0.00 2.40
504 2116 7.989170 ACTATGTGCTGAATGATGTGAATCTTA 59.011 33.333 0.00 0.00 0.00 2.10
505 2117 7.818997 ATGTGCTGAATGATGTGAATCTTAT 57.181 32.000 0.00 0.00 0.00 1.73
506 2118 7.634671 TGTGCTGAATGATGTGAATCTTATT 57.365 32.000 0.00 0.00 0.00 1.40
507 2119 7.700505 TGTGCTGAATGATGTGAATCTTATTC 58.299 34.615 0.00 0.00 0.00 1.75
508 2120 7.337436 TGTGCTGAATGATGTGAATCTTATTCA 59.663 33.333 0.00 0.00 34.50 2.57
509 2121 7.642978 GTGCTGAATGATGTGAATCTTATTCAC 59.357 37.037 20.64 20.64 46.57 3.18
545 2157 3.108881 CGATGTGAATCTCACCACTACG 58.891 50.000 4.42 0.00 46.40 3.51
598 2210 9.863650 ATGGAGTACTACTAGTTAATAAGAGCA 57.136 33.333 6.66 0.00 0.00 4.26
599 2211 9.339850 TGGAGTACTACTAGTTAATAAGAGCAG 57.660 37.037 6.66 0.00 0.00 4.24
600 2212 8.785946 GGAGTACTACTAGTTAATAAGAGCAGG 58.214 40.741 0.00 0.00 0.00 4.85
601 2213 9.558396 GAGTACTACTAGTTAATAAGAGCAGGA 57.442 37.037 0.00 0.00 0.00 3.86
602 2214 9.917887 AGTACTACTAGTTAATAAGAGCAGGAA 57.082 33.333 0.00 0.00 0.00 3.36
611 2223 7.603024 AGTTAATAAGAGCAGGAAATATACCGC 59.397 37.037 0.00 0.00 0.00 5.68
612 2224 5.746990 ATAAGAGCAGGAAATATACCGCT 57.253 39.130 13.40 13.40 38.88 5.52
613 2225 4.423625 AAGAGCAGGAAATATACCGCTT 57.576 40.909 14.13 0.00 37.39 4.68
614 2226 3.733337 AGAGCAGGAAATATACCGCTTG 58.267 45.455 14.13 0.00 37.39 4.01
615 2227 2.808543 GAGCAGGAAATATACCGCTTGG 59.191 50.000 14.13 0.00 37.39 3.61
616 2228 1.266989 GCAGGAAATATACCGCTTGGC 59.733 52.381 0.00 0.00 35.53 4.52
617 2229 2.571212 CAGGAAATATACCGCTTGGCA 58.429 47.619 0.00 0.00 35.53 4.92
618 2230 3.149196 CAGGAAATATACCGCTTGGCAT 58.851 45.455 0.00 0.00 35.53 4.40
619 2231 3.058016 CAGGAAATATACCGCTTGGCATG 60.058 47.826 0.00 0.00 35.53 4.06
620 2232 3.146066 GGAAATATACCGCTTGGCATGA 58.854 45.455 4.32 0.00 35.53 3.07
682 2294 6.588204 ACTCATTGTGTTACTCTGTTTGGTA 58.412 36.000 0.00 0.00 0.00 3.25
683 2295 6.482308 ACTCATTGTGTTACTCTGTTTGGTAC 59.518 38.462 0.00 0.00 0.00 3.34
721 2336 2.423577 GTACGAAGGTGCCACTGAATT 58.576 47.619 0.00 0.00 0.00 2.17
732 2347 6.719370 AGGTGCCACTGAATTAAATAGTTCAA 59.281 34.615 0.00 0.00 32.64 2.69
780 2395 8.485976 AGAACAATTGAGTAGCAAGAATAGTC 57.514 34.615 13.59 0.00 40.42 2.59
789 2404 8.918116 TGAGTAGCAAGAATAGTCAGAATGTAT 58.082 33.333 0.00 0.00 37.40 2.29
836 2457 7.099266 TCTCTTTTGAGCAGAAATTTGTTGA 57.901 32.000 0.00 0.00 45.83 3.18
837 2458 7.719483 TCTCTTTTGAGCAGAAATTTGTTGAT 58.281 30.769 0.00 0.00 45.83 2.57
871 2492 7.707464 TCGGAACCTTGTTTATTTTTCCTTTTC 59.293 33.333 0.00 0.00 31.97 2.29
895 2516 5.755849 TGATTTCCCTGGTTAGATCCTTTC 58.244 41.667 0.00 0.00 0.00 2.62
1006 2719 2.932614 CCTTGTCTCACCTAAATGCTCG 59.067 50.000 0.00 0.00 0.00 5.03
1007 2720 3.368427 CCTTGTCTCACCTAAATGCTCGA 60.368 47.826 0.00 0.00 0.00 4.04
1151 2864 2.348998 CGCCTTCCTGCTGTCCTT 59.651 61.111 0.00 0.00 0.00 3.36
1170 2883 1.358152 TTCCGGAGAACCCACTGAAT 58.642 50.000 3.34 0.00 34.14 2.57
1348 3061 0.403655 TTGGCTGGTTGCATCTGGTA 59.596 50.000 0.00 0.00 45.15 3.25
1422 3135 2.439507 CCAGCTCCCCTGTATGTACATT 59.560 50.000 14.77 0.00 40.06 2.71
1424 3137 4.102524 CCAGCTCCCCTGTATGTACATTAA 59.897 45.833 14.77 1.80 40.06 1.40
1509 3225 9.783256 AGTATTTGTTCAAAAATAATCTACCGC 57.217 29.630 2.11 0.00 34.61 5.68
1513 3229 8.736751 TTGTTCAAAAATAATCTACCGCTTTC 57.263 30.769 0.00 0.00 0.00 2.62
1520 3236 7.881775 AAATAATCTACCGCTTTCTTTGGAT 57.118 32.000 0.00 0.00 0.00 3.41
1652 3371 1.282157 CCTTTGGAGGTTCGAAGGGAT 59.718 52.381 0.00 0.00 42.12 3.85
1699 3418 3.503363 TGCAGTGGTATGCTTCTTTCTTG 59.497 43.478 0.00 0.00 46.63 3.02
1736 3457 4.614535 GCAGAAGTTGTTAGTTCATGCCTG 60.615 45.833 0.00 0.00 36.37 4.85
1772 3499 8.009974 GCTGCTATTTTGAATGTACTATAACCG 58.990 37.037 0.00 0.00 0.00 4.44
1944 3791 6.291377 AGTTGACAACATGACATTAGTGACT 58.709 36.000 20.08 0.00 0.00 3.41
1946 3793 7.600375 AGTTGACAACATGACATTAGTGACTAG 59.400 37.037 20.08 0.00 0.00 2.57
1953 3800 5.386958 TGACATTAGTGACTAGTGACCAC 57.613 43.478 20.00 6.95 30.04 4.16
1954 3801 4.082949 TGACATTAGTGACTAGTGACCACG 60.083 45.833 20.00 0.00 36.06 4.94
1955 3802 3.192844 ACATTAGTGACTAGTGACCACGG 59.807 47.826 20.00 0.02 36.06 4.94
1956 3803 2.865119 TAGTGACTAGTGACCACGGA 57.135 50.000 9.01 0.00 36.06 4.69
1957 3804 1.245732 AGTGACTAGTGACCACGGAC 58.754 55.000 9.01 0.00 36.06 4.79
1958 3805 0.243095 GTGACTAGTGACCACGGACC 59.757 60.000 0.00 0.00 36.20 4.46
1959 3806 0.111832 TGACTAGTGACCACGGACCT 59.888 55.000 0.00 0.00 36.20 3.85
2059 3919 6.200665 TGCAAATGTTTGATACAGCTTTGAAC 59.799 34.615 9.53 0.00 38.28 3.18
2071 3931 2.554032 AGCTTTGAACTTGGACCATTCG 59.446 45.455 0.00 0.00 0.00 3.34
2082 3942 6.811954 ACTTGGACCATTCGTTTTTATTTGT 58.188 32.000 0.00 0.00 0.00 2.83
2087 3947 6.280537 ACCATTCGTTTTTATTTGTGTTGC 57.719 33.333 0.00 0.00 0.00 4.17
2121 3981 7.042992 TCGTTACATATTTTCTAATCGGCACAG 60.043 37.037 0.00 0.00 0.00 3.66
2128 3989 2.346803 TCTAATCGGCACAGCACTTTC 58.653 47.619 0.00 0.00 0.00 2.62
2385 4267 9.226345 CAGTTAATTCTTTTTGTCACTTCACTC 57.774 33.333 0.00 0.00 0.00 3.51
2487 4369 2.070262 TGCTGTCACACATTCTCGAG 57.930 50.000 5.93 5.93 0.00 4.04
2574 4456 9.919348 TGTATTGAAAGTAACGTTGTAAAAGTC 57.081 29.630 11.99 0.00 37.62 3.01
2609 4494 6.183360 CGTCTGTCCTGTCTATCCAGAAAATA 60.183 42.308 0.00 0.00 34.24 1.40
2657 4557 6.004574 AGGTTGGTTTTCATTCCTTCTAGTC 58.995 40.000 0.00 0.00 29.96 2.59
2762 4663 3.160679 CCCCCTCAAGAGTTTCAACAT 57.839 47.619 0.00 0.00 0.00 2.71
3042 4950 6.147000 GCAAGTAAGAGAGTTTCCTTTCTCAG 59.853 42.308 4.53 0.00 41.78 3.35
3134 5043 4.746089 GCAGAGGCCTTCATATCACTTGAT 60.746 45.833 6.77 0.00 38.51 2.57
3138 5047 5.314529 AGGCCTTCATATCACTTGATCATG 58.685 41.667 0.00 7.04 36.05 3.07
3201 5110 7.471721 TCGTGCAATTAAGGTATTTCATCTTG 58.528 34.615 0.00 0.00 0.00 3.02
3286 5196 7.983484 ACATTAAATGATTCCTGATTCTTTGCC 59.017 33.333 0.00 0.00 0.00 4.52
3369 5279 2.168521 GGCTTGTGAGTACCAGCAGATA 59.831 50.000 5.96 0.00 44.90 1.98
3525 5435 8.306038 TGAAGTTCCTTGATTTCACCATAATTG 58.694 33.333 0.00 0.00 0.00 2.32
3532 5442 7.067372 CCTTGATTTCACCATAATTGTAGCAGA 59.933 37.037 0.00 0.00 0.00 4.26
3623 5771 4.281688 AGTCGTAGCCTGTAACAAACCTAA 59.718 41.667 0.00 0.00 0.00 2.69
3913 6394 7.482654 CTGATTAACAGTTGACAGTTCTTCA 57.517 36.000 0.00 1.20 41.30 3.02
3934 6415 2.308570 ACTTCCCAATCATGTACAGGCA 59.691 45.455 1.79 0.00 0.00 4.75
3990 6475 4.092091 GTCGAAGTAACTTGGCAATCAGAG 59.908 45.833 0.00 0.00 0.00 3.35
3995 6480 2.110901 ACTTGGCAATCAGAGCTGAG 57.889 50.000 0.00 0.00 43.61 3.35
4001 6486 2.614987 GGCAATCAGAGCTGAGAGTTGT 60.615 50.000 6.34 0.00 43.61 3.32
4007 6492 1.415659 AGAGCTGAGAGTTGTGCTTGT 59.584 47.619 0.00 0.00 35.76 3.16
4018 6503 0.682532 TGTGCTTGTGTTTCTGGCCA 60.683 50.000 4.71 4.71 0.00 5.36
4037 6522 0.168788 AATTTGCTCATCACGGTGCG 59.831 50.000 2.51 0.00 0.00 5.34
4067 6552 3.449227 CGTACAGCAGAGCGGGGA 61.449 66.667 0.00 0.00 0.00 4.81
4073 6558 3.695606 GCAGAGCGGGGAGTGACA 61.696 66.667 0.00 0.00 0.00 3.58
4078 6563 0.680280 GAGCGGGGAGTGACACTAGA 60.680 60.000 8.41 0.00 0.00 2.43
4086 6571 3.515901 GGGAGTGACACTAGAAGAATGGT 59.484 47.826 8.41 0.00 0.00 3.55
4180 6669 6.824958 AAAGGATAATAAGTACCAGCCAGA 57.175 37.500 0.00 0.00 0.00 3.86
4204 6693 9.425577 AGATCTAACTTTTCAAGCTTACAGTAC 57.574 33.333 0.00 0.00 0.00 2.73
4208 6697 7.640597 AACTTTTCAAGCTTACAGTACCTTT 57.359 32.000 0.00 0.00 0.00 3.11
4209 6698 7.027778 ACTTTTCAAGCTTACAGTACCTTTG 57.972 36.000 0.00 0.00 0.00 2.77
4211 6700 6.371809 TTTCAAGCTTACAGTACCTTTGTG 57.628 37.500 0.00 0.00 0.00 3.33
4213 6702 3.418684 AGCTTACAGTACCTTTGTGGG 57.581 47.619 0.00 0.00 41.11 4.61
4215 6704 2.224695 GCTTACAGTACCTTTGTGGGGT 60.225 50.000 0.00 0.00 41.11 4.95
4216 6705 3.749632 GCTTACAGTACCTTTGTGGGGTT 60.750 47.826 0.00 0.00 41.11 4.11
4219 6708 0.775542 AGTACCTTTGTGGGGTTCCC 59.224 55.000 0.00 0.00 45.71 3.97
4253 6751 8.432013 TGTTAGCACTATACATCCAAGATCATT 58.568 33.333 0.00 0.00 0.00 2.57
4257 6755 7.443575 AGCACTATACATCCAAGATCATTCAAC 59.556 37.037 0.00 0.00 0.00 3.18
4258 6756 7.443575 GCACTATACATCCAAGATCATTCAACT 59.556 37.037 0.00 0.00 0.00 3.16
4273 6771 7.244886 TCATTCAACTATTCAGAGGACTTGA 57.755 36.000 0.00 0.00 0.00 3.02
4277 6775 5.188555 TCAACTATTCAGAGGACTTGATGCT 59.811 40.000 0.00 0.00 0.00 3.79
4283 6781 4.825422 TCAGAGGACTTGATGCTAAACTG 58.175 43.478 0.00 0.00 0.00 3.16
4284 6782 4.528206 TCAGAGGACTTGATGCTAAACTGA 59.472 41.667 0.00 0.00 0.00 3.41
4285 6783 4.629200 CAGAGGACTTGATGCTAAACTGAC 59.371 45.833 0.00 0.00 0.00 3.51
4286 6784 3.589988 AGGACTTGATGCTAAACTGACG 58.410 45.455 0.00 0.00 0.00 4.35
4289 6787 1.992667 CTTGATGCTAAACTGACGCGA 59.007 47.619 15.93 0.00 0.00 5.87
4290 6788 2.073117 TGATGCTAAACTGACGCGAA 57.927 45.000 15.93 0.00 0.00 4.70
4291 6789 2.616960 TGATGCTAAACTGACGCGAAT 58.383 42.857 15.93 0.00 0.00 3.34
4292 6790 3.000041 TGATGCTAAACTGACGCGAATT 59.000 40.909 15.93 2.34 0.00 2.17
4293 6791 2.873170 TGCTAAACTGACGCGAATTG 57.127 45.000 15.93 1.98 0.00 2.32
4294 6792 2.139917 TGCTAAACTGACGCGAATTGT 58.860 42.857 15.93 2.71 0.00 2.71
4296 6794 2.156891 GCTAAACTGACGCGAATTGTCA 59.843 45.455 15.93 4.30 43.68 3.58
4297 6795 2.663279 AAACTGACGCGAATTGTCAC 57.337 45.000 15.93 0.00 41.20 3.67
4346 6858 4.614946 GGTAATAACCAGGTACGCACTAG 58.385 47.826 0.00 0.00 45.98 2.57
4356 6868 3.133003 AGGTACGCACTAGCTGAATGATT 59.867 43.478 0.00 0.00 39.10 2.57
4358 6870 4.332819 GGTACGCACTAGCTGAATGATTTT 59.667 41.667 0.00 0.00 39.10 1.82
4407 6924 3.055719 AACTGGGGCGTTGCGATG 61.056 61.111 0.00 0.00 0.00 3.84
4408 6925 3.842925 AACTGGGGCGTTGCGATGT 62.843 57.895 0.00 0.00 0.00 3.06
4409 6926 2.125310 CTGGGGCGTTGCGATGTA 60.125 61.111 0.00 0.00 0.00 2.29
4410 6927 1.743623 CTGGGGCGTTGCGATGTAA 60.744 57.895 0.00 0.00 0.00 2.41
4411 6928 1.977594 CTGGGGCGTTGCGATGTAAC 61.978 60.000 0.00 0.00 0.00 2.50
4412 6929 1.743995 GGGGCGTTGCGATGTAACT 60.744 57.895 0.00 0.00 0.00 2.24
4413 6930 0.460635 GGGGCGTTGCGATGTAACTA 60.461 55.000 0.00 0.00 0.00 2.24
4414 6931 1.578583 GGGCGTTGCGATGTAACTAT 58.421 50.000 0.00 0.00 0.00 2.12
4415 6932 1.937899 GGGCGTTGCGATGTAACTATT 59.062 47.619 0.00 0.00 0.00 1.73
4416 6933 2.033151 GGGCGTTGCGATGTAACTATTC 60.033 50.000 0.00 0.00 0.00 1.75
4417 6934 2.864343 GGCGTTGCGATGTAACTATTCT 59.136 45.455 0.00 0.00 0.00 2.40
4418 6935 3.060473 GGCGTTGCGATGTAACTATTCTC 60.060 47.826 0.00 0.00 0.00 2.87
4419 6936 3.550275 GCGTTGCGATGTAACTATTCTCA 59.450 43.478 0.00 0.00 0.00 3.27
4420 6937 4.317418 GCGTTGCGATGTAACTATTCTCAG 60.317 45.833 0.00 0.00 0.00 3.35
4421 6938 4.317418 CGTTGCGATGTAACTATTCTCAGC 60.317 45.833 0.00 0.00 0.00 4.26
4422 6939 4.385358 TGCGATGTAACTATTCTCAGCA 57.615 40.909 0.00 0.00 0.00 4.41
4423 6940 4.754322 TGCGATGTAACTATTCTCAGCAA 58.246 39.130 0.00 0.00 0.00 3.91
4424 6941 5.175127 TGCGATGTAACTATTCTCAGCAAA 58.825 37.500 0.00 0.00 0.00 3.68
4425 6942 5.291858 TGCGATGTAACTATTCTCAGCAAAG 59.708 40.000 0.00 0.00 0.00 2.77
4426 6943 5.292101 GCGATGTAACTATTCTCAGCAAAGT 59.708 40.000 0.00 0.00 0.00 2.66
4427 6944 6.475727 GCGATGTAACTATTCTCAGCAAAGTA 59.524 38.462 0.00 0.00 0.00 2.24
4428 6945 7.010183 GCGATGTAACTATTCTCAGCAAAGTAA 59.990 37.037 0.00 0.00 0.00 2.24
4429 6946 8.869897 CGATGTAACTATTCTCAGCAAAGTAAA 58.130 33.333 0.00 0.00 0.00 2.01
4431 6948 9.944376 ATGTAACTATTCTCAGCAAAGTAAAGA 57.056 29.630 0.00 0.00 0.00 2.52
4432 6949 9.424319 TGTAACTATTCTCAGCAAAGTAAAGAG 57.576 33.333 0.00 0.00 0.00 2.85
4433 6950 7.913674 AACTATTCTCAGCAAAGTAAAGAGG 57.086 36.000 0.00 0.00 0.00 3.69
4434 6951 7.246171 ACTATTCTCAGCAAAGTAAAGAGGA 57.754 36.000 0.00 0.00 0.00 3.71
4435 6952 7.856415 ACTATTCTCAGCAAAGTAAAGAGGAT 58.144 34.615 0.00 0.00 0.00 3.24
4436 6953 8.325046 ACTATTCTCAGCAAAGTAAAGAGGATT 58.675 33.333 0.00 0.00 0.00 3.01
4437 6954 9.823647 CTATTCTCAGCAAAGTAAAGAGGATTA 57.176 33.333 0.00 0.00 0.00 1.75
4439 6956 9.692325 ATTCTCAGCAAAGTAAAGAGGATTAAT 57.308 29.630 0.00 0.00 0.00 1.40
4441 6958 9.823647 TCTCAGCAAAGTAAAGAGGATTAATAG 57.176 33.333 0.00 0.00 0.00 1.73
4442 6959 9.606631 CTCAGCAAAGTAAAGAGGATTAATAGT 57.393 33.333 0.00 0.00 0.00 2.12
4445 6962 9.549078 AGCAAAGTAAAGAGGATTAATAGTAGC 57.451 33.333 0.00 0.00 0.00 3.58
4446 6963 9.326413 GCAAAGTAAAGAGGATTAATAGTAGCA 57.674 33.333 0.00 0.00 0.00 3.49
4448 6965 9.549078 AAAGTAAAGAGGATTAATAGTAGCAGC 57.451 33.333 0.00 0.00 0.00 5.25
4449 6966 8.485578 AGTAAAGAGGATTAATAGTAGCAGCT 57.514 34.615 0.00 0.00 0.00 4.24
4450 6967 8.364142 AGTAAAGAGGATTAATAGTAGCAGCTG 58.636 37.037 10.11 10.11 0.00 4.24
4451 6968 5.146010 AGAGGATTAATAGTAGCAGCTGC 57.854 43.478 31.53 31.53 42.49 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.809619 TTAGTCACTCGCATGCGCC 60.810 57.895 34.45 18.21 39.59 6.53
4 5 1.345176 GTTAGTCACTCGCATGCGC 59.655 57.895 34.45 20.07 39.59 6.09
7 8 2.370281 ACTGGTTAGTCACTCGCATG 57.630 50.000 0.00 0.00 28.79 4.06
8 9 2.427453 CCTACTGGTTAGTCACTCGCAT 59.573 50.000 0.00 0.00 38.36 4.73
9 10 1.816835 CCTACTGGTTAGTCACTCGCA 59.183 52.381 0.00 0.00 38.36 5.10
12 13 5.341617 CGAAATCCTACTGGTTAGTCACTC 58.658 45.833 0.00 0.00 38.36 3.51
13 14 4.159879 CCGAAATCCTACTGGTTAGTCACT 59.840 45.833 0.00 0.00 38.36 3.41
14 15 4.430908 CCGAAATCCTACTGGTTAGTCAC 58.569 47.826 0.00 0.00 38.36 3.67
15 16 3.118884 GCCGAAATCCTACTGGTTAGTCA 60.119 47.826 0.00 0.00 38.36 3.41
16 17 3.455327 GCCGAAATCCTACTGGTTAGTC 58.545 50.000 0.00 0.00 38.36 2.59
17 18 2.169978 GGCCGAAATCCTACTGGTTAGT 59.830 50.000 0.00 0.00 40.99 2.24
19 20 1.487558 GGGCCGAAATCCTACTGGTTA 59.512 52.381 0.00 0.00 34.23 2.85
21 22 0.912487 TGGGCCGAAATCCTACTGGT 60.912 55.000 0.00 0.00 34.23 4.00
22 23 0.179045 CTGGGCCGAAATCCTACTGG 60.179 60.000 0.00 0.00 0.00 4.00
23 24 0.179045 CCTGGGCCGAAATCCTACTG 60.179 60.000 0.00 0.00 0.00 2.74
24 25 1.984288 GCCTGGGCCGAAATCCTACT 61.984 60.000 0.00 0.00 34.56 2.57
25 26 1.526225 GCCTGGGCCGAAATCCTAC 60.526 63.158 0.00 0.00 34.56 3.18
26 27 2.915869 GCCTGGGCCGAAATCCTA 59.084 61.111 0.00 0.00 34.56 2.94
36 37 1.973812 GAAACTGACAGGCCTGGGC 60.974 63.158 35.42 26.12 41.06 5.36
37 38 0.890996 GTGAAACTGACAGGCCTGGG 60.891 60.000 35.42 25.30 34.19 4.45
38 39 1.230635 CGTGAAACTGACAGGCCTGG 61.231 60.000 35.42 20.74 31.24 4.45
39 40 0.532862 ACGTGAAACTGACAGGCCTG 60.533 55.000 31.60 31.60 31.75 4.85
41 42 1.507141 CCACGTGAAACTGACAGGCC 61.507 60.000 19.30 0.00 31.75 5.19
43 44 1.597663 GAACCACGTGAAACTGACAGG 59.402 52.381 19.30 0.00 31.75 4.00
44 45 2.285220 CAGAACCACGTGAAACTGACAG 59.715 50.000 19.30 0.00 31.75 3.51
45 46 2.276201 CAGAACCACGTGAAACTGACA 58.724 47.619 19.30 0.00 31.75 3.58
46 47 1.597663 CCAGAACCACGTGAAACTGAC 59.402 52.381 25.35 9.69 31.75 3.51
47 48 1.474320 CCCAGAACCACGTGAAACTGA 60.474 52.381 25.35 0.00 31.75 3.41
48 49 0.944386 CCCAGAACCACGTGAAACTG 59.056 55.000 19.30 20.04 31.75 3.16
49 50 0.818040 GCCCAGAACCACGTGAAACT 60.818 55.000 19.30 9.71 31.75 2.66
50 51 1.652563 GCCCAGAACCACGTGAAAC 59.347 57.895 19.30 7.41 0.00 2.78
51 52 1.527380 GGCCCAGAACCACGTGAAA 60.527 57.895 19.30 0.00 0.00 2.69
52 53 2.112297 GGCCCAGAACCACGTGAA 59.888 61.111 19.30 0.00 0.00 3.18
53 54 4.308458 CGGCCCAGAACCACGTGA 62.308 66.667 19.30 0.00 0.00 4.35
60 61 2.679996 AATTGGCCGGCCCAGAAC 60.680 61.111 41.75 17.44 46.39 3.01
61 62 1.567208 TAGAATTGGCCGGCCCAGAA 61.567 55.000 41.75 29.67 46.39 3.02
62 63 1.567208 TTAGAATTGGCCGGCCCAGA 61.567 55.000 41.75 27.61 46.39 3.86
63 64 0.682855 TTTAGAATTGGCCGGCCCAG 60.683 55.000 41.75 0.00 46.39 4.45
65 66 0.683179 AGTTTAGAATTGGCCGGCCC 60.683 55.000 41.75 26.48 34.56 5.80
66 67 0.455815 CAGTTTAGAATTGGCCGGCC 59.544 55.000 39.40 39.40 0.00 6.13
67 68 1.132453 GACAGTTTAGAATTGGCCGGC 59.868 52.381 21.18 21.18 0.00 6.13
71 72 2.706890 TCGGGACAGTTTAGAATTGGC 58.293 47.619 0.00 0.00 0.00 4.52
74 75 5.104485 AGCCTTATCGGGACAGTTTAGAATT 60.104 40.000 0.00 0.00 0.00 2.17
75 76 4.409247 AGCCTTATCGGGACAGTTTAGAAT 59.591 41.667 0.00 0.00 0.00 2.40
76 77 3.773119 AGCCTTATCGGGACAGTTTAGAA 59.227 43.478 0.00 0.00 0.00 2.10
77 78 3.132289 CAGCCTTATCGGGACAGTTTAGA 59.868 47.826 0.00 0.00 0.00 2.10
79 80 2.419574 GCAGCCTTATCGGGACAGTTTA 60.420 50.000 0.00 0.00 0.00 2.01
80 81 1.679032 GCAGCCTTATCGGGACAGTTT 60.679 52.381 0.00 0.00 0.00 2.66
81 82 0.107654 GCAGCCTTATCGGGACAGTT 60.108 55.000 0.00 0.00 0.00 3.16
82 83 1.522569 GCAGCCTTATCGGGACAGT 59.477 57.895 0.00 0.00 0.00 3.55
83 84 1.227674 GGCAGCCTTATCGGGACAG 60.228 63.158 3.29 0.00 0.00 3.51
84 85 1.686325 GAGGCAGCCTTATCGGGACA 61.686 60.000 17.46 0.00 31.76 4.02
85 86 1.069935 GAGGCAGCCTTATCGGGAC 59.930 63.158 17.46 0.00 31.76 4.46
87 88 2.029666 CGAGGCAGCCTTATCGGG 59.970 66.667 17.46 0.00 31.76 5.14
101 102 3.872728 TCGATCCACGACGGCGAG 61.873 66.667 22.49 10.46 46.45 5.03
112 113 4.664677 CGGCGGTGGGATCGATCC 62.665 72.222 32.57 32.57 46.41 3.36
113 114 4.664677 CCGGCGGTGGGATCGATC 62.665 72.222 19.97 17.36 0.00 3.69
141 142 4.541648 ATACGGCGGAGGGAGGCT 62.542 66.667 13.24 0.00 0.00 4.58
142 143 2.990830 GAAATACGGCGGAGGGAGGC 62.991 65.000 13.24 0.00 0.00 4.70
143 144 1.069258 GAAATACGGCGGAGGGAGG 59.931 63.158 13.24 0.00 0.00 4.30
145 146 1.382146 AGGAAATACGGCGGAGGGA 60.382 57.895 13.24 0.00 0.00 4.20
146 147 1.069258 GAGGAAATACGGCGGAGGG 59.931 63.158 13.24 0.00 0.00 4.30
147 148 1.069258 GGAGGAAATACGGCGGAGG 59.931 63.158 13.24 0.00 0.00 4.30
148 149 1.299926 CGGAGGAAATACGGCGGAG 60.300 63.158 13.24 0.00 0.00 4.63
149 150 1.731433 CTCGGAGGAAATACGGCGGA 61.731 60.000 13.24 1.23 35.24 5.54
176 177 4.824515 AGAGGAGGGGCGGACGAG 62.825 72.222 0.00 0.00 0.00 4.18
224 225 0.385029 CTCGAGCTGATCCTCCACTG 59.615 60.000 0.00 0.00 0.00 3.66
332 1804 3.788766 CGCGGTAGTGCAGTTGGC 61.789 66.667 0.00 0.00 45.13 4.52
333 1805 3.118454 CCGCGGTAGTGCAGTTGG 61.118 66.667 19.50 0.00 34.15 3.77
334 1806 2.495366 TACCCGCGGTAGTGCAGTTG 62.495 60.000 26.12 6.79 37.09 3.16
335 1807 2.277591 TACCCGCGGTAGTGCAGTT 61.278 57.895 26.12 0.41 37.09 3.16
336 1808 2.677524 TACCCGCGGTAGTGCAGT 60.678 61.111 26.12 15.21 37.09 4.40
337 1809 2.202703 GTACCCGCGGTAGTGCAG 60.203 66.667 26.12 9.27 39.02 4.41
338 1810 2.677524 AGTACCCGCGGTAGTGCA 60.678 61.111 26.12 0.00 40.01 4.57
341 1813 1.188863 ATTTCAGTACCCGCGGTAGT 58.811 50.000 26.12 18.36 41.99 2.73
342 1814 2.304751 AATTTCAGTACCCGCGGTAG 57.695 50.000 26.12 12.62 39.02 3.18
343 1815 2.743126 CAAAATTTCAGTACCCGCGGTA 59.257 45.455 26.12 13.74 37.09 4.02
344 1816 1.538075 CAAAATTTCAGTACCCGCGGT 59.462 47.619 26.12 14.84 40.16 5.68
345 1817 1.135517 CCAAAATTTCAGTACCCGCGG 60.136 52.381 21.04 21.04 0.00 6.46
346 1818 1.731098 GCCAAAATTTCAGTACCCGCG 60.731 52.381 0.00 0.00 0.00 6.46
347 1819 1.403647 GGCCAAAATTTCAGTACCCGC 60.404 52.381 0.00 0.00 0.00 6.13
348 1820 1.203758 GGGCCAAAATTTCAGTACCCG 59.796 52.381 4.39 0.00 0.00 5.28
349 1821 1.203758 CGGGCCAAAATTTCAGTACCC 59.796 52.381 4.39 0.00 0.00 3.69
350 1822 1.403647 GCGGGCCAAAATTTCAGTACC 60.404 52.381 4.39 0.00 0.00 3.34
351 1823 1.403647 GGCGGGCCAAAATTTCAGTAC 60.404 52.381 4.39 0.00 35.81 2.73
352 1824 0.892063 GGCGGGCCAAAATTTCAGTA 59.108 50.000 4.39 0.00 35.81 2.74
353 1825 0.831711 AGGCGGGCCAAAATTTCAGT 60.832 50.000 12.97 0.00 38.92 3.41
354 1826 0.321346 AAGGCGGGCCAAAATTTCAG 59.679 50.000 12.97 0.00 38.92 3.02
355 1827 0.320050 GAAGGCGGGCCAAAATTTCA 59.680 50.000 12.97 0.00 38.92 2.69
356 1828 0.320050 TGAAGGCGGGCCAAAATTTC 59.680 50.000 12.97 7.04 38.92 2.17
357 1829 0.034756 GTGAAGGCGGGCCAAAATTT 59.965 50.000 12.97 0.00 38.92 1.82
358 1830 1.118356 TGTGAAGGCGGGCCAAAATT 61.118 50.000 12.97 0.00 38.92 1.82
359 1831 1.532794 TGTGAAGGCGGGCCAAAAT 60.533 52.632 12.97 0.00 38.92 1.82
360 1832 2.123683 TGTGAAGGCGGGCCAAAA 60.124 55.556 12.97 0.00 38.92 2.44
361 1833 2.909965 GTGTGAAGGCGGGCCAAA 60.910 61.111 12.97 0.00 38.92 3.28
362 1834 4.966787 GGTGTGAAGGCGGGCCAA 62.967 66.667 12.97 0.00 38.92 4.52
364 1836 4.740822 ATGGTGTGAAGGCGGGCC 62.741 66.667 0.18 0.18 0.00 5.80
365 1837 2.676471 AATGGTGTGAAGGCGGGC 60.676 61.111 0.00 0.00 0.00 6.13
366 1838 0.322098 TACAATGGTGTGAAGGCGGG 60.322 55.000 0.00 0.00 38.82 6.13
367 1839 1.199097 GTTACAATGGTGTGAAGGCGG 59.801 52.381 0.00 0.00 38.82 6.13
368 1840 1.876799 TGTTACAATGGTGTGAAGGCG 59.123 47.619 0.00 0.00 38.82 5.52
369 1841 3.505680 TGATGTTACAATGGTGTGAAGGC 59.494 43.478 0.00 0.00 38.82 4.35
370 1842 4.379813 GCTGATGTTACAATGGTGTGAAGG 60.380 45.833 0.00 0.00 38.82 3.46
371 1843 4.669965 CGCTGATGTTACAATGGTGTGAAG 60.670 45.833 0.00 0.00 38.82 3.02
372 1844 3.188254 CGCTGATGTTACAATGGTGTGAA 59.812 43.478 0.00 0.00 38.82 3.18
373 1845 2.741517 CGCTGATGTTACAATGGTGTGA 59.258 45.455 0.00 0.00 38.82 3.58
374 1846 2.159531 CCGCTGATGTTACAATGGTGTG 60.160 50.000 0.00 0.00 38.82 3.82
375 1847 2.083774 CCGCTGATGTTACAATGGTGT 58.916 47.619 0.00 0.00 42.09 4.16
376 1848 1.401552 CCCGCTGATGTTACAATGGTG 59.598 52.381 0.00 0.00 0.00 4.17
377 1849 1.280710 TCCCGCTGATGTTACAATGGT 59.719 47.619 0.00 0.00 0.00 3.55
378 1850 2.036958 TCCCGCTGATGTTACAATGG 57.963 50.000 0.00 0.00 0.00 3.16
379 1851 4.637483 AAATCCCGCTGATGTTACAATG 57.363 40.909 0.00 0.00 32.68 2.82
380 1852 6.061441 TGATAAATCCCGCTGATGTTACAAT 58.939 36.000 0.00 0.00 32.68 2.71
381 1853 5.432645 TGATAAATCCCGCTGATGTTACAA 58.567 37.500 0.00 0.00 32.68 2.41
382 1854 5.029807 TGATAAATCCCGCTGATGTTACA 57.970 39.130 0.00 0.00 32.68 2.41
431 1956 8.285394 CGAGCTGCAATAGTTTGATGTTATTAT 58.715 33.333 1.02 0.00 34.60 1.28
432 1957 7.254761 CCGAGCTGCAATAGTTTGATGTTATTA 60.255 37.037 1.02 0.00 34.60 0.98
433 1958 6.458751 CCGAGCTGCAATAGTTTGATGTTATT 60.459 38.462 1.02 0.00 34.60 1.40
451 1976 3.190874 GACTAGAAATTCCACCGAGCTG 58.809 50.000 0.00 0.00 0.00 4.24
458 2062 4.319177 AGTGTGCTGACTAGAAATTCCAC 58.681 43.478 0.00 0.00 0.00 4.02
511 2123 8.405531 TGAGATTCACATCGTTCTTTTCTTTTT 58.594 29.630 0.00 0.00 34.17 1.94
512 2124 7.857885 GTGAGATTCACATCGTTCTTTTCTTTT 59.142 33.333 4.42 0.00 46.22 2.27
513 2125 7.355778 GTGAGATTCACATCGTTCTTTTCTTT 58.644 34.615 4.42 0.00 46.22 2.52
514 2126 6.892691 GTGAGATTCACATCGTTCTTTTCTT 58.107 36.000 4.42 0.00 46.22 2.52
515 2127 6.473397 GTGAGATTCACATCGTTCTTTTCT 57.527 37.500 4.42 0.00 46.22 2.52
574 2186 8.785946 CCTGCTCTTATTAACTAGTAGTACTCC 58.214 40.741 5.96 0.00 0.00 3.85
586 2198 7.603024 AGCGGTATATTTCCTGCTCTTATTAAC 59.397 37.037 0.00 0.00 32.65 2.01
588 2200 7.241042 AGCGGTATATTTCCTGCTCTTATTA 57.759 36.000 0.00 0.00 32.65 0.98
589 2201 6.115448 AGCGGTATATTTCCTGCTCTTATT 57.885 37.500 0.00 0.00 32.65 1.40
592 2204 4.130118 CAAGCGGTATATTTCCTGCTCTT 58.870 43.478 12.32 0.00 35.25 2.85
593 2205 3.495100 CCAAGCGGTATATTTCCTGCTCT 60.495 47.826 12.32 5.40 35.25 4.09
594 2206 2.808543 CCAAGCGGTATATTTCCTGCTC 59.191 50.000 12.32 0.00 35.25 4.26
595 2207 2.851195 CCAAGCGGTATATTTCCTGCT 58.149 47.619 0.00 0.00 36.79 4.24
596 2208 1.266989 GCCAAGCGGTATATTTCCTGC 59.733 52.381 0.00 0.00 33.28 4.85
597 2209 2.571212 TGCCAAGCGGTATATTTCCTG 58.429 47.619 0.00 0.00 33.28 3.86
598 2210 3.149196 CATGCCAAGCGGTATATTTCCT 58.851 45.455 0.00 0.00 35.02 3.36
599 2211 3.146066 TCATGCCAAGCGGTATATTTCC 58.854 45.455 0.00 0.00 35.02 3.13
600 2212 3.815401 ACTCATGCCAAGCGGTATATTTC 59.185 43.478 0.00 0.00 35.02 2.17
601 2213 3.565482 CACTCATGCCAAGCGGTATATTT 59.435 43.478 0.00 0.00 35.02 1.40
602 2214 3.141398 CACTCATGCCAAGCGGTATATT 58.859 45.455 0.00 0.00 35.02 1.28
603 2215 2.550855 CCACTCATGCCAAGCGGTATAT 60.551 50.000 0.00 0.00 35.02 0.86
604 2216 1.202639 CCACTCATGCCAAGCGGTATA 60.203 52.381 0.00 0.00 35.02 1.47
605 2217 0.464373 CCACTCATGCCAAGCGGTAT 60.464 55.000 0.00 0.00 38.30 2.73
606 2218 1.078497 CCACTCATGCCAAGCGGTA 60.078 57.895 0.00 0.00 33.28 4.02
607 2219 2.360350 CCACTCATGCCAAGCGGT 60.360 61.111 0.00 0.00 33.28 5.68
608 2220 1.926511 GAACCACTCATGCCAAGCGG 61.927 60.000 0.00 0.00 0.00 5.52
609 2221 1.503542 GAACCACTCATGCCAAGCG 59.496 57.895 0.00 0.00 0.00 4.68
610 2222 1.503542 CGAACCACTCATGCCAAGC 59.496 57.895 0.00 0.00 0.00 4.01
611 2223 0.957395 AGCGAACCACTCATGCCAAG 60.957 55.000 0.00 0.00 0.00 3.61
612 2224 0.323302 TAGCGAACCACTCATGCCAA 59.677 50.000 0.00 0.00 0.00 4.52
613 2225 0.541392 ATAGCGAACCACTCATGCCA 59.459 50.000 0.00 0.00 0.00 4.92
614 2226 1.202580 AGATAGCGAACCACTCATGCC 60.203 52.381 0.00 0.00 0.00 4.40
615 2227 2.231215 AGATAGCGAACCACTCATGC 57.769 50.000 0.00 0.00 0.00 4.06
616 2228 6.662414 TTTTTAGATAGCGAACCACTCATG 57.338 37.500 0.00 0.00 0.00 3.07
643 2255 4.460382 ACAATGAGTATTTCCTGCACTTGG 59.540 41.667 0.00 0.00 0.00 3.61
644 2256 5.048504 ACACAATGAGTATTTCCTGCACTTG 60.049 40.000 0.00 0.00 0.00 3.16
694 2309 2.102588 GTGGCACCTTCGTACCATCTAT 59.897 50.000 6.29 0.00 37.75 1.98
697 2312 0.249398 AGTGGCACCTTCGTACCATC 59.751 55.000 15.27 0.00 37.75 3.51
699 2314 1.116536 TCAGTGGCACCTTCGTACCA 61.117 55.000 15.27 0.00 32.62 3.25
700 2315 0.034337 TTCAGTGGCACCTTCGTACC 59.966 55.000 15.27 0.00 0.00 3.34
704 2319 4.701956 ATTTAATTCAGTGGCACCTTCG 57.298 40.909 15.27 0.49 0.00 3.79
738 2353 9.956720 CAATTGTTCTTCACTATTTTCTCTGTT 57.043 29.630 0.00 0.00 29.38 3.16
740 2355 9.823098 CTCAATTGTTCTTCACTATTTTCTCTG 57.177 33.333 5.13 0.00 29.38 3.35
744 2359 9.548208 GCTACTCAATTGTTCTTCACTATTTTC 57.452 33.333 5.13 0.00 29.38 2.29
751 2366 6.545504 TCTTGCTACTCAATTGTTCTTCAC 57.454 37.500 5.13 0.00 33.57 3.18
807 2428 8.854117 ACAAATTTCTGCTCAAAAGAGATTACT 58.146 29.630 0.00 0.00 30.59 2.24
871 2492 5.379706 AAGGATCTAACCAGGGAAATCAG 57.620 43.478 0.00 0.00 0.00 2.90
1028 2741 4.436998 CCCACAGGACGCCGTCTC 62.437 72.222 17.76 7.39 33.47 3.36
1107 2820 3.626924 GTGGACTCACGCCCCTGT 61.627 66.667 0.00 0.00 33.87 4.00
1146 2859 0.321387 GTGGGTTCTCCGGAAAGGAC 60.321 60.000 5.23 0.00 45.98 3.85
1151 2864 1.278127 GATTCAGTGGGTTCTCCGGAA 59.722 52.381 5.23 0.00 38.76 4.30
1170 2883 3.273654 AGGGAGAGGACGGTGGGA 61.274 66.667 0.00 0.00 0.00 4.37
1232 2945 4.657824 CGTGGACAAGGTCGCCGT 62.658 66.667 0.00 0.00 32.65 5.68
1236 2949 3.103911 GCGTCGTGGACAAGGTCG 61.104 66.667 0.00 0.00 32.65 4.79
1290 3003 1.906757 CGATCTCGGCATAGATGAGC 58.093 55.000 4.88 0.00 36.33 4.26
1315 3028 4.275781 CCAACTTGGTGGGCTGTT 57.724 55.556 0.00 0.00 34.77 3.16
1348 3061 3.402681 CCTCCACCGCCCATCAGT 61.403 66.667 0.00 0.00 0.00 3.41
1443 3156 7.067859 AGCAATGCAGAAGATAATTCAGCTTTA 59.932 33.333 8.35 0.00 31.52 1.85
1509 3225 2.334838 GCTGCAGCAATCCAAAGAAAG 58.665 47.619 33.36 0.00 41.59 2.62
1513 3229 0.454600 ATCGCTGCAGCAATCCAAAG 59.545 50.000 36.03 18.39 42.21 2.77
1520 3236 0.606130 TCCAAGAATCGCTGCAGCAA 60.606 50.000 36.03 22.17 42.21 3.91
1599 3318 1.907807 GCATGACCCCACCTGCAAA 60.908 57.895 0.00 0.00 34.77 3.68
1600 3319 2.283101 GCATGACCCCACCTGCAA 60.283 61.111 0.00 0.00 34.77 4.08
1634 3353 1.982226 TGATCCCTTCGAACCTCCAAA 59.018 47.619 0.00 0.00 0.00 3.28
1652 3371 4.525996 CATTCACCATGGTATCCAGTTGA 58.474 43.478 19.28 5.08 36.75 3.18
1699 3418 2.945668 ACTTCTGCTGAACACCAAGAAC 59.054 45.455 1.33 0.00 0.00 3.01
1736 3457 0.182299 AAATAGCAGCTCCAGCCTCC 59.818 55.000 0.00 0.00 43.38 4.30
1772 3499 3.055819 TCAGACAGTCCAGCAAACCTATC 60.056 47.826 0.00 0.00 0.00 2.08
1783 3510 2.054021 TGGTCCAATTCAGACAGTCCA 58.946 47.619 0.00 0.00 35.89 4.02
1784 3511 2.859165 TGGTCCAATTCAGACAGTCC 57.141 50.000 0.00 0.00 35.89 3.85
1944 3791 2.519771 ACATAGGTCCGTGGTCACTA 57.480 50.000 0.00 0.00 0.00 2.74
1946 3793 1.734707 CGAACATAGGTCCGTGGTCAC 60.735 57.143 13.59 0.00 31.55 3.67
1953 3800 2.728922 GTTCTAGCGAACATAGGTCCG 58.271 52.381 0.19 0.00 46.88 4.79
2010 3870 0.698238 CCAAAGTGTGATCCCCCAGA 59.302 55.000 0.00 0.00 0.00 3.86
2059 3919 6.699642 ACACAAATAAAAACGAATGGTCCAAG 59.300 34.615 0.00 0.00 0.00 3.61
2121 3981 4.641989 ACCAACATCTGATATGGAAAGTGC 59.358 41.667 21.77 0.00 36.75 4.40
2128 3989 5.353956 TGAACGAAACCAACATCTGATATGG 59.646 40.000 16.11 16.11 38.91 2.74
2354 4236 8.250143 AGTGACAAAAAGAATTAACTGGGAAT 57.750 30.769 0.00 0.00 0.00 3.01
2385 4267 6.673154 TGAACACTTCATAATCAGCTGATG 57.327 37.500 29.34 18.80 34.08 3.07
2487 4369 1.917872 TGGTGGACAAATACAAGGGC 58.082 50.000 0.00 0.00 0.00 5.19
2574 4456 1.374758 GGACAGACGAGCACCAAGG 60.375 63.158 0.00 0.00 0.00 3.61
2609 4494 1.702957 TCGGTTTGAAAGGGTCAGGAT 59.297 47.619 0.00 0.00 37.61 3.24
2762 4663 4.383931 AGGCGGTATATCTCCTGAAGTA 57.616 45.455 0.00 0.00 0.00 2.24
3042 4950 3.118482 TCAGGAATTCAGGATGCTCAGAC 60.118 47.826 7.93 0.00 34.76 3.51
3134 5043 5.182950 ACGGAATTTTGTGACTAATGCATGA 59.817 36.000 0.00 0.00 0.00 3.07
3138 5047 5.041951 TGACGGAATTTTGTGACTAATGC 57.958 39.130 0.00 0.00 0.00 3.56
3220 5130 7.130917 GCTTCAGCTCATTATGTATTTGAGTG 58.869 38.462 0.00 0.00 39.24 3.51
3229 5139 3.012518 GTGTGGCTTCAGCTCATTATGT 58.987 45.455 0.00 0.00 41.70 2.29
3286 5196 8.074370 CACTTCTTGTATCCATAATCATTGCTG 58.926 37.037 0.00 0.00 0.00 4.41
3369 5279 2.909662 AGCCTTCCTAAGAAGCTCAAGT 59.090 45.455 0.00 0.00 46.97 3.16
3421 5331 4.312443 ACTGTAAACGAATCAACCGATGT 58.688 39.130 0.00 0.00 30.13 3.06
3603 5515 5.927954 TTTTAGGTTTGTTACAGGCTACG 57.072 39.130 0.00 0.00 0.00 3.51
3623 5771 1.070601 GCCAAACATCACAGGGCTTTT 59.929 47.619 0.00 0.00 41.39 2.27
3659 6072 9.832445 AGTTACACAGTTACCAATCCATATAAG 57.168 33.333 0.00 0.00 0.00 1.73
3913 6394 2.308570 TGCCTGTACATGATTGGGAAGT 59.691 45.455 0.00 0.00 0.00 3.01
3934 6415 4.704833 AGCTGCGCCGGTGTCAAT 62.705 61.111 17.91 4.21 0.00 2.57
3990 6475 1.303309 ACACAAGCACAACTCTCAGC 58.697 50.000 0.00 0.00 0.00 4.26
3995 6480 2.796032 GCCAGAAACACAAGCACAACTC 60.796 50.000 0.00 0.00 0.00 3.01
4001 6486 1.412079 ATTGGCCAGAAACACAAGCA 58.588 45.000 5.11 0.00 0.00 3.91
4007 6492 2.037901 TGAGCAAATTGGCCAGAAACA 58.962 42.857 5.11 0.00 0.00 2.83
4018 6503 0.168788 CGCACCGTGATGAGCAAATT 59.831 50.000 1.65 0.00 0.00 1.82
4037 6522 1.729149 GCTGTACGCTGCCAAAATGAC 60.729 52.381 0.00 0.00 34.09 3.06
4066 6551 5.392767 TGACCATTCTTCTAGTGTCACTC 57.607 43.478 9.26 0.00 0.00 3.51
4067 6552 5.481824 TGATGACCATTCTTCTAGTGTCACT 59.518 40.000 10.99 10.99 35.76 3.41
4073 6558 7.429374 TCTTGATGATGACCATTCTTCTAGT 57.571 36.000 0.00 0.00 35.17 2.57
4078 6563 6.263412 AGGATCTTGATGATGACCATTCTT 57.737 37.500 0.00 0.00 35.17 2.52
4086 6571 5.343307 TTGAACGAGGATCTTGATGATGA 57.657 39.130 0.00 0.00 35.14 2.92
4154 6643 8.208903 TCTGGCTGGTACTTATTATCCTTTAAC 58.791 37.037 0.00 0.00 0.00 2.01
4166 6655 6.869206 AAAGTTAGATCTGGCTGGTACTTA 57.131 37.500 5.18 0.00 0.00 2.24
4171 6660 4.640771 TGAAAAGTTAGATCTGGCTGGT 57.359 40.909 5.18 0.00 0.00 4.00
4180 6669 8.376270 AGGTACTGTAAGCTTGAAAAGTTAGAT 58.624 33.333 9.86 0.00 42.62 1.98
4213 6702 8.601672 ATAGTGCTAACAATAGGCTGGGAACC 62.602 46.154 0.00 0.00 38.41 3.62
4215 6704 2.576191 AGTGCTAACAATAGGCTGGGAA 59.424 45.455 0.00 0.00 0.00 3.97
4216 6705 2.196595 AGTGCTAACAATAGGCTGGGA 58.803 47.619 0.00 0.00 0.00 4.37
4219 6708 6.591834 GGATGTATAGTGCTAACAATAGGCTG 59.408 42.308 0.00 0.00 28.42 4.85
4221 6710 6.464222 TGGATGTATAGTGCTAACAATAGGC 58.536 40.000 0.00 0.00 28.42 3.93
4222 6711 8.367911 TCTTGGATGTATAGTGCTAACAATAGG 58.632 37.037 0.00 0.00 28.42 2.57
4253 6751 5.188555 AGCATCAAGTCCTCTGAATAGTTGA 59.811 40.000 10.06 10.06 0.00 3.18
4257 6755 7.224362 CAGTTTAGCATCAAGTCCTCTGAATAG 59.776 40.741 0.00 0.00 0.00 1.73
4258 6756 7.044181 CAGTTTAGCATCAAGTCCTCTGAATA 58.956 38.462 0.00 0.00 0.00 1.75
4273 6771 2.742053 ACAATTCGCGTCAGTTTAGCAT 59.258 40.909 5.77 0.00 0.00 3.79
4277 6775 3.124560 TGTGACAATTCGCGTCAGTTTA 58.875 40.909 5.77 0.00 43.75 2.01
4283 6781 4.675114 AGAAATTTTGTGACAATTCGCGTC 59.325 37.500 5.77 0.00 34.71 5.19
4284 6782 4.440758 CAGAAATTTTGTGACAATTCGCGT 59.559 37.500 5.77 0.00 34.71 6.01
4285 6783 4.440758 ACAGAAATTTTGTGACAATTCGCG 59.559 37.500 12.73 0.00 34.71 5.87
4286 6784 5.332506 CCACAGAAATTTTGTGACAATTCGC 60.333 40.000 23.47 0.00 46.85 4.70
4289 6787 6.127083 ACTCCCACAGAAATTTTGTGACAATT 60.127 34.615 23.47 0.00 46.85 2.32
4290 6788 5.363580 ACTCCCACAGAAATTTTGTGACAAT 59.636 36.000 23.47 11.32 46.85 2.71
4291 6789 4.709397 ACTCCCACAGAAATTTTGTGACAA 59.291 37.500 23.47 0.00 46.85 3.18
4292 6790 4.097741 CACTCCCACAGAAATTTTGTGACA 59.902 41.667 23.47 14.00 46.85 3.58
4293 6791 4.499696 CCACTCCCACAGAAATTTTGTGAC 60.500 45.833 23.47 1.56 46.85 3.67
4294 6792 3.636300 CCACTCCCACAGAAATTTTGTGA 59.364 43.478 23.47 11.61 46.85 3.58
4296 6794 3.636764 GACCACTCCCACAGAAATTTTGT 59.363 43.478 0.00 0.00 0.00 2.83
4297 6795 3.636300 TGACCACTCCCACAGAAATTTTG 59.364 43.478 0.00 0.00 0.00 2.44
4358 6870 8.846943 TCAACTACATTGAGATCTGCTTAAAA 57.153 30.769 0.00 0.00 42.62 1.52
4382 6899 3.741476 CGCCCCAGTTGCAAGCTC 61.741 66.667 0.00 0.00 0.00 4.09
4384 6901 3.605664 AACGCCCCAGTTGCAAGC 61.606 61.111 0.00 0.00 32.39 4.01
4403 6920 6.893958 ACTTTGCTGAGAATAGTTACATCG 57.106 37.500 0.00 0.00 0.00 3.84
4407 6924 8.874816 CCTCTTTACTTTGCTGAGAATAGTTAC 58.125 37.037 0.00 0.00 0.00 2.50
4408 6925 8.812972 TCCTCTTTACTTTGCTGAGAATAGTTA 58.187 33.333 0.00 0.00 0.00 2.24
4409 6926 7.680730 TCCTCTTTACTTTGCTGAGAATAGTT 58.319 34.615 0.00 0.00 0.00 2.24
4410 6927 7.246171 TCCTCTTTACTTTGCTGAGAATAGT 57.754 36.000 0.00 0.00 0.00 2.12
4411 6928 8.729805 AATCCTCTTTACTTTGCTGAGAATAG 57.270 34.615 0.00 0.00 0.00 1.73
4413 6930 9.692325 ATTAATCCTCTTTACTTTGCTGAGAAT 57.308 29.630 0.00 0.00 0.00 2.40
4415 6932 9.823647 CTATTAATCCTCTTTACTTTGCTGAGA 57.176 33.333 0.00 0.00 0.00 3.27
4416 6933 9.606631 ACTATTAATCCTCTTTACTTTGCTGAG 57.393 33.333 0.00 0.00 0.00 3.35
4419 6936 9.549078 GCTACTATTAATCCTCTTTACTTTGCT 57.451 33.333 0.00 0.00 0.00 3.91
4420 6937 9.326413 TGCTACTATTAATCCTCTTTACTTTGC 57.674 33.333 0.00 0.00 0.00 3.68
4422 6939 9.549078 GCTGCTACTATTAATCCTCTTTACTTT 57.451 33.333 0.00 0.00 0.00 2.66
4423 6940 8.929487 AGCTGCTACTATTAATCCTCTTTACTT 58.071 33.333 0.00 0.00 0.00 2.24
4424 6941 8.364142 CAGCTGCTACTATTAATCCTCTTTACT 58.636 37.037 0.00 0.00 0.00 2.24
4425 6942 7.117092 GCAGCTGCTACTATTAATCCTCTTTAC 59.883 40.741 31.33 0.00 38.21 2.01
4426 6943 7.155328 GCAGCTGCTACTATTAATCCTCTTTA 58.845 38.462 31.33 0.00 38.21 1.85
4427 6944 5.994668 GCAGCTGCTACTATTAATCCTCTTT 59.005 40.000 31.33 0.00 38.21 2.52
4428 6945 5.546526 GCAGCTGCTACTATTAATCCTCTT 58.453 41.667 31.33 0.00 38.21 2.85
4429 6946 5.146010 GCAGCTGCTACTATTAATCCTCT 57.854 43.478 31.33 0.00 38.21 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.