Multiple sequence alignment - TraesCS2D01G598600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G598600 chr2D 100.000 2488 0 0 1 2488 650564469 650566956 0.000000e+00 4595.0
1 TraesCS2D01G598600 chr2D 79.923 782 125 17 962 1739 650585352 650586105 1.680000e-151 545.0
2 TraesCS2D01G598600 chr2D 89.521 334 33 2 2155 2488 481952339 481952670 2.960000e-114 422.0
3 TraesCS2D01G598600 chr2B 90.577 1231 77 22 651 1856 787097956 787099172 0.000000e+00 1594.0
4 TraesCS2D01G598600 chr2B 87.169 943 60 32 644 1582 787232954 787233839 0.000000e+00 1014.0
5 TraesCS2D01G598600 chr2B 93.949 661 36 4 913 1573 787154266 787154922 0.000000e+00 996.0
6 TraesCS2D01G598600 chr2B 85.870 920 97 18 11 917 787150685 787151584 0.000000e+00 948.0
7 TraesCS2D01G598600 chr2B 90.385 260 15 2 1907 2156 787156203 787156462 1.430000e-87 333.0
8 TraesCS2D01G598600 chr2B 79.167 408 63 17 396 796 54007053 54007445 1.900000e-66 263.0
9 TraesCS2D01G598600 chr2B 93.590 156 8 1 1910 2063 787099176 787099331 5.350000e-57 231.0
10 TraesCS2D01G598600 chr2A 89.507 934 67 17 644 1562 773779187 773778270 0.000000e+00 1153.0
11 TraesCS2D01G598600 chr2A 88.812 581 44 11 1589 2156 773778274 773777702 0.000000e+00 693.0
12 TraesCS2D01G598600 chr2A 80.282 781 122 18 962 1739 771933996 771934747 6.010000e-156 560.0
13 TraesCS2D01G598600 chr4D 94.362 337 19 0 2152 2488 496121647 496121983 3.670000e-143 518.0
14 TraesCS2D01G598600 chr5D 93.114 334 23 0 2155 2488 236872062 236872395 8.000000e-135 490.0
15 TraesCS2D01G598600 chr5D 80.695 259 30 12 73 325 3757072 3757316 1.520000e-42 183.0
16 TraesCS2D01G598600 chr5B 92.515 334 24 1 2155 2488 62295551 62295219 6.230000e-131 477.0
17 TraesCS2D01G598600 chr1D 92.515 334 24 1 2155 2488 491110189 491109857 6.230000e-131 477.0
18 TraesCS2D01G598600 chr1D 90.282 319 29 2 2157 2474 37534831 37535148 1.380000e-112 416.0
19 TraesCS2D01G598600 chr1D 84.783 92 10 2 1781 1869 18197565 18197655 3.410000e-14 89.8
20 TraesCS2D01G598600 chr7A 90.882 340 28 2 2152 2488 77589007 77588668 1.050000e-123 453.0
21 TraesCS2D01G598600 chr7A 84.541 414 57 7 391 800 580475365 580475775 1.070000e-108 403.0
22 TraesCS2D01G598600 chr5A 88.724 337 35 3 2152 2488 8248374 8248707 2.300000e-110 409.0
23 TraesCS2D01G598600 chr7D 88.496 339 36 3 2152 2488 51808115 51808452 8.280000e-110 407.0
24 TraesCS2D01G598600 chr6A 81.190 420 54 15 391 798 48632504 48632910 5.170000e-82 315.0
25 TraesCS2D01G598600 chr6A 80.676 414 60 14 391 799 111448024 111448422 1.120000e-78 303.0
26 TraesCS2D01G598600 chr6A 82.857 245 23 10 558 798 12306940 12306711 4.200000e-48 202.0
27 TraesCS2D01G598600 chr6A 77.586 290 55 10 426 711 383476157 383475874 1.530000e-37 167.0
28 TraesCS2D01G598600 chr6A 72.414 377 82 15 1058 1431 12378336 12377979 1.570000e-17 100.0
29 TraesCS2D01G598600 chr1B 81.654 387 58 9 420 799 666272112 666272492 2.400000e-80 309.0
30 TraesCS2D01G598600 chr6B 79.518 415 62 16 391 799 87053018 87053415 8.770000e-70 274.0
31 TraesCS2D01G598600 chr6B 81.618 272 40 10 391 658 417237364 417237099 1.500000e-52 217.0
32 TraesCS2D01G598600 chr6B 72.679 377 81 16 1058 1431 20667646 20667289 3.380000e-19 106.0
33 TraesCS2D01G598600 chr6D 72.679 377 82 14 1058 1431 10815261 10814903 3.380000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G598600 chr2D 650564469 650566956 2487 False 4595.0 4595 100.0000 1 2488 1 chr2D.!!$F2 2487
1 TraesCS2D01G598600 chr2D 650585352 650586105 753 False 545.0 545 79.9230 962 1739 1 chr2D.!!$F3 777
2 TraesCS2D01G598600 chr2B 787232954 787233839 885 False 1014.0 1014 87.1690 644 1582 1 chr2B.!!$F2 938
3 TraesCS2D01G598600 chr2B 787097956 787099331 1375 False 912.5 1594 92.0835 651 2063 2 chr2B.!!$F3 1412
4 TraesCS2D01G598600 chr2B 787150685 787156462 5777 False 759.0 996 90.0680 11 2156 3 chr2B.!!$F4 2145
5 TraesCS2D01G598600 chr2A 773777702 773779187 1485 True 923.0 1153 89.1595 644 2156 2 chr2A.!!$R1 1512
6 TraesCS2D01G598600 chr2A 771933996 771934747 751 False 560.0 560 80.2820 962 1739 1 chr2A.!!$F1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 274 0.038166 TTCTTGATGGCCTCCACCAC 59.962 55.0 3.32 0.0 44.17 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 5996 0.109086 TAGCAGCGCTCTTCAGTCAC 60.109 55.0 7.13 0.0 40.44 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.271396 CGAAGCTCTTTATTGATCTGTCAG 57.729 41.667 0.00 0.00 35.39 3.51
56 57 7.828223 AGCTCTTTATTGATCTGTCAGAATGTT 59.172 33.333 6.64 0.00 37.40 2.71
69 70 5.920840 TGTCAGAATGTTTACAGAGACGAAG 59.079 40.000 0.00 0.00 37.40 3.79
71 72 6.641314 GTCAGAATGTTTACAGAGACGAAGAA 59.359 38.462 0.00 0.00 37.40 2.52
79 80 9.193133 TGTTTACAGAGACGAAGAAAAGATTAG 57.807 33.333 0.00 0.00 0.00 1.73
80 81 7.813852 TTACAGAGACGAAGAAAAGATTAGC 57.186 36.000 0.00 0.00 0.00 3.09
81 82 5.784177 ACAGAGACGAAGAAAAGATTAGCA 58.216 37.500 0.00 0.00 0.00 3.49
83 84 5.290643 CAGAGACGAAGAAAAGATTAGCAGG 59.709 44.000 0.00 0.00 0.00 4.85
124 125 3.502595 GTGACCAACCTCTAAAGAAAGGC 59.497 47.826 0.00 0.00 36.01 4.35
125 126 3.394606 TGACCAACCTCTAAAGAAAGGCT 59.605 43.478 0.00 0.00 36.01 4.58
130 131 3.798202 ACCTCTAAAGAAAGGCTATGCG 58.202 45.455 0.00 0.00 36.01 4.73
133 134 3.444916 TCTAAAGAAAGGCTATGCGTCG 58.555 45.455 0.00 0.00 0.00 5.12
140 141 2.526120 GGCTATGCGTCGCAAGGTC 61.526 63.158 25.66 16.99 43.62 3.85
142 143 1.516386 CTATGCGTCGCAAGGTCGT 60.516 57.895 25.66 9.11 43.62 4.34
156 157 4.142600 GCAAGGTCGTGAGCTTCAATATTT 60.143 41.667 11.12 0.00 46.20 1.40
162 163 6.244275 GTCGTGAGCTTCAATATTTGAACTC 58.756 40.000 16.76 16.76 44.21 3.01
204 207 7.408756 TTTGCAAGTAATGAAATCCTAGCAT 57.591 32.000 0.00 0.00 0.00 3.79
208 211 6.914757 GCAAGTAATGAAATCCTAGCATGTTC 59.085 38.462 0.00 0.00 0.00 3.18
210 213 6.662755 AGTAATGAAATCCTAGCATGTTCCA 58.337 36.000 0.00 0.00 0.00 3.53
224 227 7.893124 AGCATGTTCCATGAATTCTTAGATT 57.107 32.000 7.05 0.00 0.00 2.40
232 235 7.170965 TCCATGAATTCTTAGATTATGGCTCC 58.829 38.462 7.05 0.00 34.92 4.70
242 245 5.885449 AGATTATGGCTCCATAGCTATCC 57.115 43.478 2.34 2.64 46.02 2.59
243 246 5.283763 AGATTATGGCTCCATAGCTATCCA 58.716 41.667 12.82 12.82 46.02 3.41
254 257 5.066593 CCATAGCTATCCAAACTTCCCTTC 58.933 45.833 2.34 0.00 0.00 3.46
271 274 0.038166 TTCTTGATGGCCTCCACCAC 59.962 55.000 3.32 0.00 44.17 4.16
273 276 0.251297 CTTGATGGCCTCCACCACAA 60.251 55.000 3.32 0.00 44.17 3.33
279 282 2.564721 GCCTCCACCACAACCTTGC 61.565 63.158 0.00 0.00 0.00 4.01
288 291 1.667236 CACAACCTTGCAGTCTGACA 58.333 50.000 10.88 0.00 0.00 3.58
291 294 2.158769 ACAACCTTGCAGTCTGACATCA 60.159 45.455 10.88 4.33 0.00 3.07
322 326 7.202016 TGTGTTGAACATAAAGATCCTCAAC 57.798 36.000 0.00 5.93 41.80 3.18
325 329 8.443937 GTGTTGAACATAAAGATCCTCAACTAC 58.556 37.037 0.00 6.84 41.91 2.73
388 392 4.357325 ACATGAGAAGTGGGAGTACAGAT 58.643 43.478 0.00 0.00 0.00 2.90
415 419 3.062466 GTTTTGGCTCCCGGGCTC 61.062 66.667 18.49 9.71 41.48 4.70
416 420 3.575247 TTTTGGCTCCCGGGCTCA 61.575 61.111 18.49 11.07 41.48 4.26
417 421 2.917897 TTTTGGCTCCCGGGCTCAT 61.918 57.895 18.49 0.00 41.48 2.90
418 422 2.837031 TTTTGGCTCCCGGGCTCATC 62.837 60.000 18.49 3.79 41.48 2.92
419 423 4.804420 TGGCTCCCGGGCTCATCT 62.804 66.667 18.49 0.00 41.48 2.90
420 424 4.247380 GGCTCCCGGGCTCATCTG 62.247 72.222 18.49 0.33 37.53 2.90
421 425 3.157252 GCTCCCGGGCTCATCTGA 61.157 66.667 18.49 0.00 0.00 3.27
422 426 3.136750 CTCCCGGGCTCATCTGAG 58.863 66.667 18.49 0.25 44.75 3.35
431 435 1.440893 CTCATCTGAGCCGGGAGTG 59.559 63.158 2.18 0.00 35.13 3.51
436 440 1.079543 CTGAGCCGGGAGTGAACAG 60.080 63.158 2.18 0.00 0.00 3.16
455 459 9.744468 GTGAACAGTAAATTCACCAAAAATAGT 57.256 29.630 6.60 0.00 46.77 2.12
512 518 6.084925 GTGAAAGATGCTTGAGTTCTTGATG 58.915 40.000 0.00 0.00 30.41 3.07
518 524 2.158449 GCTTGAGTTCTTGATGTCCGTG 59.842 50.000 0.00 0.00 0.00 4.94
519 525 3.653344 CTTGAGTTCTTGATGTCCGTGA 58.347 45.455 0.00 0.00 0.00 4.35
544 550 5.844301 AAATTCAATGCGTTTCAACATCC 57.156 34.783 0.00 0.00 0.00 3.51
548 554 0.442310 ATGCGTTTCAACATCCGACG 59.558 50.000 0.00 0.00 36.85 5.12
550 556 0.093026 GCGTTTCAACATCCGACGAG 59.907 55.000 0.00 0.00 35.90 4.18
553 559 1.390463 GTTTCAACATCCGACGAGCTC 59.610 52.381 2.73 2.73 0.00 4.09
563 569 1.139989 CGACGAGCTCTCAGCAAAAA 58.860 50.000 12.85 0.00 45.56 1.94
609 615 7.755582 AAAAGATTACTGTTTTGCACTGTTC 57.244 32.000 0.00 0.00 38.45 3.18
616 622 2.215196 GTTTTGCACTGTTCGGACCTA 58.785 47.619 0.00 0.00 0.00 3.08
674 680 1.985473 ATGAGCTGAAACTTGGCACA 58.015 45.000 0.00 0.00 0.00 4.57
682 688 4.201891 GCTGAAACTTGGCACAGATATCAG 60.202 45.833 5.32 12.88 42.39 2.90
847 869 3.368013 CCTGTATACAAGTGAGCACCGAA 60.368 47.826 7.06 0.00 0.00 4.30
928 3640 5.824624 TCTTCAAGATAGGATCATGCAAACC 59.175 40.000 0.00 0.00 0.00 3.27
988 3700 1.478510 AGTGCCTACAAGAGATCGTGG 59.521 52.381 0.99 0.00 0.00 4.94
1095 3807 2.490165 AAGCCTGCTATGCTTGCTG 58.510 52.632 7.06 0.00 46.76 4.41
1148 3860 4.900635 AGCGTTGTCTGAAAATTTCACT 57.099 36.364 4.03 0.00 35.46 3.41
1360 4078 0.753262 AGCAAGACCTATACCGGCAG 59.247 55.000 0.00 0.00 0.00 4.85
1531 4261 5.993441 TGATGCAGGATGTATGATGTAACAG 59.007 40.000 0.00 0.00 43.13 3.16
1532 4262 5.612725 TGCAGGATGTATGATGTAACAGA 57.387 39.130 0.00 0.00 39.31 3.41
1640 4373 9.890629 TTACTAACAGATCTGCACTAATCAAAT 57.109 29.630 22.83 0.00 0.00 2.32
1645 4378 6.660521 ACAGATCTGCACTAATCAAATTGGAA 59.339 34.615 22.83 0.00 0.00 3.53
1646 4379 7.341256 ACAGATCTGCACTAATCAAATTGGAAT 59.659 33.333 22.83 0.00 0.00 3.01
1648 4381 9.584008 AGATCTGCACTAATCAAATTGGAATAT 57.416 29.630 0.00 0.00 0.00 1.28
1650 4383 9.976511 ATCTGCACTAATCAAATTGGAATATTG 57.023 29.630 0.00 0.00 0.00 1.90
1653 4386 8.196771 TGCACTAATCAAATTGGAATATTGGAC 58.803 33.333 0.00 0.00 0.00 4.02
1678 4995 4.100189 AGTGGATTACAGGAGATCCGAAAG 59.900 45.833 0.00 0.00 43.86 2.62
1689 5006 4.501743 GGAGATCCGAAAGTATCAAGGGAC 60.502 50.000 0.00 0.00 0.00 4.46
1777 5118 4.267928 CGTGCTAGTTTCTACATGTAAGCC 59.732 45.833 17.92 10.81 0.00 4.35
1857 5593 2.351276 CCCCACAGGTTCTTCCGG 59.649 66.667 0.00 0.00 41.99 5.14
1867 5603 3.605749 TTCTTCCGGGCTGGCTTCG 62.606 63.158 7.74 0.00 37.80 3.79
1887 5623 1.033746 CCAGCAATGGCACTACCCAG 61.034 60.000 0.00 0.00 44.61 4.45
1895 5631 0.908180 GGCACTACCCAGTACCCACT 60.908 60.000 0.00 0.00 32.61 4.00
1904 5640 1.006758 CCAGTACCCACTCTACCTCCA 59.993 57.143 0.00 0.00 30.46 3.86
1905 5641 2.100989 CAGTACCCACTCTACCTCCAC 58.899 57.143 0.00 0.00 30.46 4.02
1908 5644 0.487772 ACCCACTCTACCTCCACAGT 59.512 55.000 0.00 0.00 0.00 3.55
1911 5647 2.530701 CCACTCTACCTCCACAGTCTT 58.469 52.381 0.00 0.00 0.00 3.01
1920 5656 0.898320 TCCACAGTCTTCAGCTAGCC 59.102 55.000 12.13 0.00 0.00 3.93
1921 5657 0.610174 CCACAGTCTTCAGCTAGCCA 59.390 55.000 12.13 0.00 0.00 4.75
1994 5731 5.740290 TGGCTAACTAACTAGCTGAGTTT 57.260 39.130 11.97 1.09 46.79 2.66
2025 5764 5.163343 TGTCTGTAAACTAGGCACAAACTCT 60.163 40.000 0.00 0.00 0.00 3.24
2150 5907 1.148723 GAGCAGAGCATCCCAGCAT 59.851 57.895 0.00 0.00 36.85 3.79
2156 5913 2.812591 CAGAGCATCCCAGCATAATCAC 59.187 50.000 0.00 0.00 36.85 3.06
2157 5914 2.709934 AGAGCATCCCAGCATAATCACT 59.290 45.455 0.00 0.00 36.85 3.41
2158 5915 3.906218 AGAGCATCCCAGCATAATCACTA 59.094 43.478 0.00 0.00 36.85 2.74
2159 5916 3.999663 GAGCATCCCAGCATAATCACTAC 59.000 47.826 0.00 0.00 36.85 2.73
2160 5917 3.649981 AGCATCCCAGCATAATCACTACT 59.350 43.478 0.00 0.00 36.85 2.57
2161 5918 4.840680 AGCATCCCAGCATAATCACTACTA 59.159 41.667 0.00 0.00 36.85 1.82
2162 5919 5.046735 AGCATCCCAGCATAATCACTACTAG 60.047 44.000 0.00 0.00 36.85 2.57
2163 5920 5.047021 GCATCCCAGCATAATCACTACTAGA 60.047 44.000 0.00 0.00 0.00 2.43
2164 5921 6.519043 GCATCCCAGCATAATCACTACTAGAA 60.519 42.308 0.00 0.00 0.00 2.10
2165 5922 7.445121 CATCCCAGCATAATCACTACTAGAAA 58.555 38.462 0.00 0.00 0.00 2.52
2166 5923 7.432148 TCCCAGCATAATCACTACTAGAAAA 57.568 36.000 0.00 0.00 0.00 2.29
2167 5924 7.857456 TCCCAGCATAATCACTACTAGAAAAA 58.143 34.615 0.00 0.00 0.00 1.94
2168 5925 8.494433 TCCCAGCATAATCACTACTAGAAAAAT 58.506 33.333 0.00 0.00 0.00 1.82
2169 5926 8.562892 CCCAGCATAATCACTACTAGAAAAATG 58.437 37.037 0.00 0.00 0.00 2.32
2170 5927 8.072567 CCAGCATAATCACTACTAGAAAAATGC 58.927 37.037 0.00 0.00 0.00 3.56
2171 5928 8.834465 CAGCATAATCACTACTAGAAAAATGCT 58.166 33.333 0.00 0.00 39.35 3.79
2172 5929 9.401058 AGCATAATCACTACTAGAAAAATGCTT 57.599 29.630 0.00 0.00 35.91 3.91
2187 5944 9.066892 AGAAAAATGCTTATACACAAGAAGTCA 57.933 29.630 0.00 0.00 0.00 3.41
2188 5945 9.334693 GAAAAATGCTTATACACAAGAAGTCAG 57.665 33.333 0.00 0.00 0.00 3.51
2189 5946 7.986085 AAATGCTTATACACAAGAAGTCAGT 57.014 32.000 0.00 0.00 0.00 3.41
2190 5947 9.502091 AAAATGCTTATACACAAGAAGTCAGTA 57.498 29.630 0.00 0.00 0.00 2.74
2191 5948 8.709386 AATGCTTATACACAAGAAGTCAGTAG 57.291 34.615 0.00 0.00 0.00 2.57
2192 5949 7.228314 TGCTTATACACAAGAAGTCAGTAGT 57.772 36.000 0.00 0.00 0.00 2.73
2193 5950 8.344446 TGCTTATACACAAGAAGTCAGTAGTA 57.656 34.615 0.00 0.00 0.00 1.82
2194 5951 8.459635 TGCTTATACACAAGAAGTCAGTAGTAG 58.540 37.037 0.00 0.00 0.00 2.57
2195 5952 7.432838 GCTTATACACAAGAAGTCAGTAGTAGC 59.567 40.741 0.00 0.00 0.00 3.58
2196 5953 4.162096 ACACAAGAAGTCAGTAGTAGCG 57.838 45.455 0.00 0.00 0.00 4.26
2197 5954 2.917971 CACAAGAAGTCAGTAGTAGCGC 59.082 50.000 0.00 0.00 0.00 5.92
2198 5955 2.820787 ACAAGAAGTCAGTAGTAGCGCT 59.179 45.455 17.26 17.26 0.00 5.92
2199 5956 3.256136 ACAAGAAGTCAGTAGTAGCGCTT 59.744 43.478 18.68 0.00 0.00 4.68
2200 5957 4.238514 CAAGAAGTCAGTAGTAGCGCTTT 58.761 43.478 18.68 7.38 0.00 3.51
2201 5958 4.522722 AGAAGTCAGTAGTAGCGCTTTT 57.477 40.909 18.68 6.95 0.00 2.27
2202 5959 4.884247 AGAAGTCAGTAGTAGCGCTTTTT 58.116 39.130 18.68 3.95 0.00 1.94
2203 5960 6.022163 AGAAGTCAGTAGTAGCGCTTTTTA 57.978 37.500 18.68 2.80 0.00 1.52
2204 5961 6.631962 AGAAGTCAGTAGTAGCGCTTTTTAT 58.368 36.000 18.68 0.00 0.00 1.40
2205 5962 7.769220 AGAAGTCAGTAGTAGCGCTTTTTATA 58.231 34.615 18.68 0.00 0.00 0.98
2206 5963 8.248945 AGAAGTCAGTAGTAGCGCTTTTTATAA 58.751 33.333 18.68 0.00 0.00 0.98
2207 5964 7.988904 AGTCAGTAGTAGCGCTTTTTATAAG 57.011 36.000 18.68 0.00 0.00 1.73
2208 5965 7.769220 AGTCAGTAGTAGCGCTTTTTATAAGA 58.231 34.615 18.68 1.84 0.00 2.10
2209 5966 8.248945 AGTCAGTAGTAGCGCTTTTTATAAGAA 58.751 33.333 18.68 0.00 0.00 2.52
2210 5967 8.866956 GTCAGTAGTAGCGCTTTTTATAAGAAA 58.133 33.333 18.68 0.00 0.00 2.52
2211 5968 9.084164 TCAGTAGTAGCGCTTTTTATAAGAAAG 57.916 33.333 18.68 12.20 37.21 2.62
2217 5974 4.745170 GCTTTTTATAAGAAAGCGCTGC 57.255 40.909 12.58 6.54 46.36 5.25
2218 5975 4.415735 GCTTTTTATAAGAAAGCGCTGCT 58.584 39.130 12.58 9.30 46.36 4.24
2219 5976 4.263911 GCTTTTTATAAGAAAGCGCTGCTG 59.736 41.667 12.58 0.00 46.36 4.41
2220 5977 3.405170 TTTATAAGAAAGCGCTGCTGC 57.595 42.857 12.58 5.34 39.62 5.25
2222 5979 2.315925 ATAAGAAAGCGCTGCTGCTA 57.684 45.000 12.58 2.47 46.60 3.49
2223 5980 2.093306 TAAGAAAGCGCTGCTGCTAA 57.907 45.000 12.58 0.00 46.60 3.09
2224 5981 1.238439 AAGAAAGCGCTGCTGCTAAA 58.762 45.000 12.58 0.00 46.60 1.85
2225 5982 1.457346 AGAAAGCGCTGCTGCTAAAT 58.543 45.000 12.58 8.54 46.60 1.40
2226 5983 2.632377 AGAAAGCGCTGCTGCTAAATA 58.368 42.857 12.58 0.00 46.60 1.40
2227 5984 3.009723 AGAAAGCGCTGCTGCTAAATAA 58.990 40.909 12.58 0.00 46.60 1.40
2228 5985 2.832672 AAGCGCTGCTGCTAAATAAC 57.167 45.000 12.58 0.00 46.60 1.89
2229 5986 0.652592 AGCGCTGCTGCTAAATAACG 59.347 50.000 10.39 0.00 45.14 3.18
2230 5987 0.316196 GCGCTGCTGCTAAATAACGG 60.316 55.000 14.03 0.00 36.97 4.44
2231 5988 1.006832 CGCTGCTGCTAAATAACGGT 58.993 50.000 14.03 0.00 36.97 4.83
2232 5989 2.198406 CGCTGCTGCTAAATAACGGTA 58.802 47.619 14.03 0.00 36.97 4.02
2233 5990 2.218759 CGCTGCTGCTAAATAACGGTAG 59.781 50.000 14.03 0.00 36.97 3.18
2234 5991 2.032808 GCTGCTGCTAAATAACGGTAGC 60.033 50.000 8.53 0.00 42.36 3.58
2235 5992 2.198406 TGCTGCTAAATAACGGTAGCG 58.802 47.619 13.69 13.69 44.70 4.26
2236 5993 1.070776 GCTGCTAAATAACGGTAGCGC 60.071 52.381 15.35 0.00 44.70 5.92
2237 5994 2.470821 CTGCTAAATAACGGTAGCGCT 58.529 47.619 17.26 17.26 44.70 5.92
2238 5995 2.198406 TGCTAAATAACGGTAGCGCTG 58.802 47.619 22.90 5.81 44.70 5.18
2239 5996 1.525619 GCTAAATAACGGTAGCGCTGG 59.474 52.381 22.90 11.90 33.90 4.85
2240 5997 2.817901 CTAAATAACGGTAGCGCTGGT 58.182 47.619 22.90 12.62 0.00 4.00
2241 5998 1.365699 AAATAACGGTAGCGCTGGTG 58.634 50.000 22.90 11.72 0.00 4.17
2242 5999 0.533491 AATAACGGTAGCGCTGGTGA 59.467 50.000 22.90 8.94 0.00 4.02
2243 6000 0.179119 ATAACGGTAGCGCTGGTGAC 60.179 55.000 22.90 10.22 0.00 3.67
2244 6001 1.246056 TAACGGTAGCGCTGGTGACT 61.246 55.000 22.90 2.38 0.00 3.41
2245 6002 2.507102 CGGTAGCGCTGGTGACTG 60.507 66.667 22.90 11.66 0.00 3.51
2246 6003 2.970639 GGTAGCGCTGGTGACTGA 59.029 61.111 22.90 0.00 0.00 3.41
2247 6004 1.292223 GGTAGCGCTGGTGACTGAA 59.708 57.895 22.90 0.00 0.00 3.02
2248 6005 0.737715 GGTAGCGCTGGTGACTGAAG 60.738 60.000 22.90 0.00 0.00 3.02
2249 6006 0.243907 GTAGCGCTGGTGACTGAAGA 59.756 55.000 22.90 0.00 0.00 2.87
2250 6007 0.528017 TAGCGCTGGTGACTGAAGAG 59.472 55.000 22.90 0.00 0.00 2.85
2251 6008 2.386660 GCGCTGGTGACTGAAGAGC 61.387 63.158 0.00 0.00 0.00 4.09
2252 6009 2.091112 CGCTGGTGACTGAAGAGCG 61.091 63.158 0.00 0.00 45.60 5.03
2253 6010 2.386660 GCTGGTGACTGAAGAGCGC 61.387 63.158 0.00 0.00 0.00 5.92
2254 6011 1.291588 CTGGTGACTGAAGAGCGCT 59.708 57.895 11.27 11.27 0.00 5.92
2255 6012 1.005748 TGGTGACTGAAGAGCGCTG 60.006 57.895 18.48 1.17 0.00 5.18
2256 6013 2.386660 GGTGACTGAAGAGCGCTGC 61.387 63.158 18.48 6.71 0.00 5.25
2257 6014 1.373999 GTGACTGAAGAGCGCTGCT 60.374 57.895 18.48 9.38 43.88 4.24
2258 6015 0.109086 GTGACTGAAGAGCGCTGCTA 60.109 55.000 18.48 0.00 39.88 3.49
2259 6016 0.109086 TGACTGAAGAGCGCTGCTAC 60.109 55.000 18.48 0.00 39.88 3.58
2260 6017 0.109086 GACTGAAGAGCGCTGCTACA 60.109 55.000 18.48 8.86 39.88 2.74
2261 6018 0.318441 ACTGAAGAGCGCTGCTACAA 59.682 50.000 18.48 0.66 39.88 2.41
2262 6019 1.066573 ACTGAAGAGCGCTGCTACAAT 60.067 47.619 18.48 0.00 39.88 2.71
2263 6020 2.005451 CTGAAGAGCGCTGCTACAATT 58.995 47.619 18.48 0.00 39.88 2.32
2264 6021 2.002586 TGAAGAGCGCTGCTACAATTC 58.997 47.619 18.48 7.90 39.88 2.17
2265 6022 2.002586 GAAGAGCGCTGCTACAATTCA 58.997 47.619 18.48 0.00 39.88 2.57
2266 6023 2.322355 AGAGCGCTGCTACAATTCAT 57.678 45.000 18.48 0.00 39.88 2.57
2267 6024 1.938577 AGAGCGCTGCTACAATTCATG 59.061 47.619 18.48 0.00 39.88 3.07
2268 6025 1.667724 GAGCGCTGCTACAATTCATGT 59.332 47.619 18.48 0.00 46.36 3.21
2269 6026 2.866156 GAGCGCTGCTACAATTCATGTA 59.134 45.455 18.48 0.00 43.63 2.29
2279 6036 2.609459 ACAATTCATGTAGCAGTAGCGC 59.391 45.455 0.00 0.00 41.63 5.92
2280 6037 3.679917 ACAATTCATGTAGCAGTAGCGCT 60.680 43.478 17.26 17.26 46.26 5.92
2281 6038 5.158093 ACAATTCATGTAGCAGTAGCGCTT 61.158 41.667 18.68 0.00 43.56 4.68
2282 6039 6.598614 ACAATTCATGTAGCAGTAGCGCTTT 61.599 40.000 18.68 0.54 43.56 3.51
2283 6040 8.005759 ACAATTCATGTAGCAGTAGCGCTTTT 62.006 38.462 18.68 0.07 43.56 2.27
2284 6041 9.883375 ACAATTCATGTAGCAGTAGCGCTTTTG 62.883 40.741 18.68 15.97 43.56 2.44
2293 6050 6.921332 GCAGTAGCGCTTTTGTTATAAAAA 57.079 33.333 18.68 0.00 0.00 1.94
2318 6075 4.296690 GCTACTACTATAGTTGCCAACGG 58.703 47.826 11.40 0.00 46.84 4.44
2319 6076 4.202090 GCTACTACTATAGTTGCCAACGGT 60.202 45.833 11.40 3.33 46.84 4.83
2320 6077 4.382345 ACTACTATAGTTGCCAACGGTC 57.618 45.455 11.40 0.00 34.86 4.79
2321 6078 2.288961 ACTATAGTTGCCAACGGTCG 57.711 50.000 0.00 0.00 36.23 4.79
2322 6079 0.928229 CTATAGTTGCCAACGGTCGC 59.072 55.000 1.20 0.00 36.23 5.19
2323 6080 0.246910 TATAGTTGCCAACGGTCGCA 59.753 50.000 1.20 0.00 36.23 5.10
2324 6081 0.392461 ATAGTTGCCAACGGTCGCAT 60.392 50.000 0.00 0.00 34.35 4.73
2325 6082 1.295357 TAGTTGCCAACGGTCGCATG 61.295 55.000 0.00 0.00 34.35 4.06
2326 6083 3.361158 TTGCCAACGGTCGCATGG 61.361 61.111 0.00 10.26 34.35 3.66
2329 6086 3.803082 CCAACGGTCGCATGGCAG 61.803 66.667 0.00 0.00 0.00 4.85
2330 6087 3.049674 CAACGGTCGCATGGCAGT 61.050 61.111 0.00 0.00 0.00 4.40
2331 6088 3.049674 AACGGTCGCATGGCAGTG 61.050 61.111 0.00 0.00 0.00 3.66
2334 6091 3.136123 GGTCGCATGGCAGTGCAT 61.136 61.111 18.61 5.84 45.30 3.96
2335 6092 1.819208 GGTCGCATGGCAGTGCATA 60.819 57.895 18.61 5.53 45.30 3.14
2336 6093 1.168407 GGTCGCATGGCAGTGCATAT 61.168 55.000 18.61 7.89 45.30 1.78
2337 6094 1.511850 GTCGCATGGCAGTGCATATA 58.488 50.000 18.61 0.00 45.30 0.86
2338 6095 2.079158 GTCGCATGGCAGTGCATATAT 58.921 47.619 18.61 2.52 45.30 0.86
2339 6096 3.261580 GTCGCATGGCAGTGCATATATA 58.738 45.455 18.61 0.00 45.30 0.86
2340 6097 3.062639 GTCGCATGGCAGTGCATATATAC 59.937 47.826 18.61 4.33 45.30 1.47
2341 6098 3.055891 TCGCATGGCAGTGCATATATACT 60.056 43.478 18.61 0.00 45.30 2.12
2342 6099 4.159506 TCGCATGGCAGTGCATATATACTA 59.840 41.667 18.61 0.00 45.30 1.82
2343 6100 4.505556 CGCATGGCAGTGCATATATACTAG 59.494 45.833 18.61 0.00 45.30 2.57
2344 6101 5.423015 GCATGGCAGTGCATATATACTAGT 58.577 41.667 18.61 0.00 44.43 2.57
2345 6102 6.573434 GCATGGCAGTGCATATATACTAGTA 58.427 40.000 18.61 4.77 44.43 1.82
2346 6103 6.699204 GCATGGCAGTGCATATATACTAGTAG 59.301 42.308 18.61 0.00 44.43 2.57
2347 6104 6.208988 TGGCAGTGCATATATACTAGTAGC 57.791 41.667 18.61 6.45 0.00 3.58
2348 6105 5.163652 TGGCAGTGCATATATACTAGTAGCG 60.164 44.000 18.61 0.00 0.00 4.26
2349 6106 4.735822 GCAGTGCATATATACTAGTAGCGC 59.264 45.833 11.09 13.80 0.00 5.92
2350 6107 5.449314 GCAGTGCATATATACTAGTAGCGCT 60.449 44.000 17.26 17.26 41.45 5.92
2351 6108 6.556212 CAGTGCATATATACTAGTAGCGCTT 58.444 40.000 18.68 0.00 39.08 4.68
2352 6109 6.470556 CAGTGCATATATACTAGTAGCGCTTG 59.529 42.308 18.68 3.70 39.08 4.01
2353 6110 6.151312 AGTGCATATATACTAGTAGCGCTTGT 59.849 38.462 18.68 12.55 38.05 3.16
2354 6111 6.807230 GTGCATATATACTAGTAGCGCTTGTT 59.193 38.462 18.68 3.95 35.03 2.83
2355 6112 7.966753 GTGCATATATACTAGTAGCGCTTGTTA 59.033 37.037 18.68 5.07 35.03 2.41
2356 6113 8.683615 TGCATATATACTAGTAGCGCTTGTTAT 58.316 33.333 18.68 8.47 35.03 1.89
2357 6114 9.517609 GCATATATACTAGTAGCGCTTGTTATT 57.482 33.333 18.68 0.00 35.03 1.40
2364 6121 7.461918 ACTAGTAGCGCTTGTTATTAAAAAGC 58.538 34.615 18.68 17.84 42.28 3.51
2371 6128 6.540323 GCTTGTTATTAAAAAGCGCTACTG 57.460 37.500 12.05 1.32 37.21 2.74
2372 6129 5.003496 GCTTGTTATTAAAAAGCGCTACTGC 59.997 40.000 12.05 7.82 37.21 4.40
2374 6131 6.971527 TGTTATTAAAAAGCGCTACTGCTA 57.028 33.333 12.05 0.00 46.60 3.49
2375 6132 7.548196 TGTTATTAAAAAGCGCTACTGCTAT 57.452 32.000 12.05 3.12 46.60 2.97
2376 6133 7.981142 TGTTATTAAAAAGCGCTACTGCTATT 58.019 30.769 12.05 0.00 46.60 1.73
2377 6134 7.908082 TGTTATTAAAAAGCGCTACTGCTATTG 59.092 33.333 12.05 0.00 46.60 1.90
2378 6135 2.832672 AAAAGCGCTACTGCTATTGC 57.167 45.000 12.05 0.00 46.60 3.56
2379 6136 0.652592 AAAGCGCTACTGCTATTGCG 59.347 50.000 12.05 11.00 46.60 4.85
2381 6138 3.704843 CGCTACTGCTATTGCGCA 58.295 55.556 5.66 5.66 41.85 6.09
2382 6139 2.229039 CGCTACTGCTATTGCGCAT 58.771 52.632 12.75 3.99 41.85 4.73
2383 6140 1.418373 CGCTACTGCTATTGCGCATA 58.582 50.000 12.75 2.21 41.85 3.14
2384 6141 1.388093 CGCTACTGCTATTGCGCATAG 59.612 52.381 12.75 15.86 41.85 2.23
2403 6160 1.497991 GCAATAGCGCCGTATTCTGA 58.502 50.000 2.29 0.00 0.00 3.27
2404 6161 1.192534 GCAATAGCGCCGTATTCTGAC 59.807 52.381 2.29 0.00 0.00 3.51
2405 6162 1.452025 CAATAGCGCCGTATTCTGACG 59.548 52.381 2.29 0.00 42.55 4.35
2406 6163 0.949397 ATAGCGCCGTATTCTGACGA 59.051 50.000 2.29 0.00 45.82 4.20
2407 6164 0.306840 TAGCGCCGTATTCTGACGAG 59.693 55.000 2.29 0.00 45.82 4.18
2408 6165 2.577785 GCGCCGTATTCTGACGAGC 61.578 63.158 0.00 0.00 45.82 5.03
2409 6166 3.601981 GCCGTATTCTGACGAGCG 58.398 61.111 0.00 0.00 45.82 5.03
2410 6167 2.577785 GCCGTATTCTGACGAGCGC 61.578 63.158 0.00 0.00 45.82 5.92
2411 6168 1.064296 CCGTATTCTGACGAGCGCT 59.936 57.895 11.27 11.27 45.82 5.92
2412 6169 0.306840 CCGTATTCTGACGAGCGCTA 59.693 55.000 11.50 0.00 45.82 4.26
2413 6170 1.386961 CGTATTCTGACGAGCGCTAC 58.613 55.000 11.50 5.77 45.82 3.58
2414 6171 1.003759 CGTATTCTGACGAGCGCTACT 60.004 52.381 11.50 0.00 45.82 2.57
2415 6172 2.376956 GTATTCTGACGAGCGCTACTG 58.623 52.381 11.50 5.99 0.00 2.74
2416 6173 0.526524 ATTCTGACGAGCGCTACTGC 60.527 55.000 11.50 0.21 0.00 4.40
2444 6201 3.806958 GCAGTAGCGGTTGTTTCTAAAC 58.193 45.455 0.00 0.00 39.33 2.01
2445 6202 3.249080 GCAGTAGCGGTTGTTTCTAAACA 59.751 43.478 4.19 4.19 46.35 2.83
2446 6203 6.758603 AGCAGTAGCGGTTGTTTCTAAACAG 61.759 44.000 8.19 0.00 46.80 3.16
2456 6213 5.130292 TGTTTCTAAACAGCGCTACTACT 57.870 39.130 10.99 0.00 43.45 2.57
2457 6214 6.258230 TGTTTCTAAACAGCGCTACTACTA 57.742 37.500 10.99 0.00 43.45 1.82
2458 6215 6.088824 TGTTTCTAAACAGCGCTACTACTAC 58.911 40.000 10.99 2.65 43.45 2.73
2459 6216 4.526970 TCTAAACAGCGCTACTACTACG 57.473 45.455 10.99 0.00 0.00 3.51
2460 6217 2.556534 AAACAGCGCTACTACTACGG 57.443 50.000 10.99 0.00 0.00 4.02
2461 6218 1.457346 AACAGCGCTACTACTACGGT 58.543 50.000 10.99 0.00 38.16 4.83
2462 6219 1.457346 ACAGCGCTACTACTACGGTT 58.543 50.000 10.99 0.00 34.98 4.44
2463 6220 2.632377 ACAGCGCTACTACTACGGTTA 58.368 47.619 10.99 0.00 34.98 2.85
2464 6221 2.352960 ACAGCGCTACTACTACGGTTAC 59.647 50.000 10.99 0.00 34.98 2.50
2465 6222 1.943340 AGCGCTACTACTACGGTTACC 59.057 52.381 8.99 0.00 33.05 2.85
2466 6223 1.943340 GCGCTACTACTACGGTTACCT 59.057 52.381 0.00 0.00 0.00 3.08
2467 6224 2.356069 GCGCTACTACTACGGTTACCTT 59.644 50.000 0.00 0.00 0.00 3.50
2468 6225 3.560068 GCGCTACTACTACGGTTACCTTA 59.440 47.826 0.00 0.00 0.00 2.69
2469 6226 4.214332 GCGCTACTACTACGGTTACCTTAT 59.786 45.833 0.00 0.00 0.00 1.73
2470 6227 5.615764 GCGCTACTACTACGGTTACCTTATC 60.616 48.000 0.00 0.00 0.00 1.75
2471 6228 5.106908 CGCTACTACTACGGTTACCTTATCC 60.107 48.000 0.00 0.00 0.00 2.59
2472 6229 5.765182 GCTACTACTACGGTTACCTTATCCA 59.235 44.000 0.00 0.00 0.00 3.41
2473 6230 6.293680 GCTACTACTACGGTTACCTTATCCAC 60.294 46.154 0.00 0.00 0.00 4.02
2474 6231 4.576463 ACTACTACGGTTACCTTATCCACG 59.424 45.833 0.00 0.00 0.00 4.94
2475 6232 2.099756 ACTACGGTTACCTTATCCACGC 59.900 50.000 0.00 0.00 0.00 5.34
2476 6233 0.176449 ACGGTTACCTTATCCACGCC 59.824 55.000 0.00 0.00 0.00 5.68
2477 6234 0.872881 CGGTTACCTTATCCACGCCG 60.873 60.000 0.00 0.00 0.00 6.46
2478 6235 1.156034 GGTTACCTTATCCACGCCGC 61.156 60.000 0.00 0.00 0.00 6.53
2479 6236 1.227031 TTACCTTATCCACGCCGCG 60.227 57.895 12.14 12.14 0.00 6.46
2480 6237 3.778360 TACCTTATCCACGCCGCGC 62.778 63.158 13.88 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.553511 ACAGATCAATAAAGAGCTTCGCG 59.446 43.478 0.00 0.00 30.63 5.87
26 27 4.568359 TGACAGATCAATAAAGAGCTTCGC 59.432 41.667 0.00 0.00 30.63 4.70
27 28 6.038985 TCTGACAGATCAATAAAGAGCTTCG 58.961 40.000 0.00 0.00 30.63 3.79
50 51 8.073355 TCTTTTCTTCGTCTCTGTAAACATTC 57.927 34.615 0.00 0.00 0.00 2.67
56 57 7.375834 TGCTAATCTTTTCTTCGTCTCTGTAA 58.624 34.615 0.00 0.00 0.00 2.41
62 63 4.020128 ACCCTGCTAATCTTTTCTTCGTCT 60.020 41.667 0.00 0.00 0.00 4.18
69 70 1.751351 GGCCACCCTGCTAATCTTTTC 59.249 52.381 0.00 0.00 0.00 2.29
71 72 1.002857 AGGCCACCCTGCTAATCTTT 58.997 50.000 5.01 0.00 40.94 2.52
103 104 3.394606 AGCCTTTCTTTAGAGGTTGGTCA 59.605 43.478 0.00 0.00 35.42 4.02
111 112 3.487574 CGACGCATAGCCTTTCTTTAGAG 59.512 47.826 0.00 0.00 0.00 2.43
120 121 1.815421 CCTTGCGACGCATAGCCTT 60.815 57.895 25.09 0.00 38.76 4.35
124 125 1.516386 ACGACCTTGCGACGCATAG 60.516 57.895 25.09 21.21 38.76 2.23
125 126 1.803922 CACGACCTTGCGACGCATA 60.804 57.895 25.09 13.37 38.76 3.14
130 131 1.618640 GAAGCTCACGACCTTGCGAC 61.619 60.000 0.00 0.00 34.83 5.19
133 134 1.160137 ATTGAAGCTCACGACCTTGC 58.840 50.000 0.00 0.00 0.00 4.01
162 163 8.776470 ACTTGCAAATTTGTTCATGAATTTAGG 58.224 29.630 19.03 0.00 34.62 2.69
176 178 8.598075 GCTAGGATTTCATTACTTGCAAATTTG 58.402 33.333 14.03 14.03 33.10 2.32
180 182 6.832520 TGCTAGGATTTCATTACTTGCAAA 57.167 33.333 0.00 0.00 38.39 3.68
208 211 6.944290 TGGAGCCATAATCTAAGAATTCATGG 59.056 38.462 8.44 10.76 35.59 3.66
210 213 9.902684 CTATGGAGCCATAATCTAAGAATTCAT 57.097 33.333 8.44 0.00 38.30 2.57
232 235 5.934781 AGAAGGGAAGTTTGGATAGCTATG 58.065 41.667 11.94 0.00 0.00 2.23
242 245 2.232208 GGCCATCAAGAAGGGAAGTTTG 59.768 50.000 0.00 0.00 0.00 2.93
243 246 2.110721 AGGCCATCAAGAAGGGAAGTTT 59.889 45.455 5.01 0.00 0.00 2.66
271 274 2.225019 GTGATGTCAGACTGCAAGGTTG 59.775 50.000 1.31 0.00 39.30 3.77
273 276 1.417517 TGTGATGTCAGACTGCAAGGT 59.582 47.619 1.31 0.00 39.30 3.50
291 294 8.246180 GGATCTTTATGTTCAACACATTCATGT 58.754 33.333 0.00 0.00 44.40 3.21
346 350 9.522804 CTCATGTACCACTTAGAGAATTAACTC 57.477 37.037 0.00 0.00 37.19 3.01
350 354 9.256228 ACTTCTCATGTACCACTTAGAGAATTA 57.744 33.333 0.00 0.00 40.20 1.40
357 361 4.466370 TCCCACTTCTCATGTACCACTTAG 59.534 45.833 0.00 0.00 0.00 2.18
375 379 1.955080 CCCGTCTATCTGTACTCCCAC 59.045 57.143 0.00 0.00 0.00 4.61
388 392 2.358984 GCCAAAACGCCCCGTCTA 60.359 61.111 0.00 0.00 39.99 2.59
413 417 1.039785 TCACTCCCGGCTCAGATGAG 61.040 60.000 5.45 5.45 44.75 2.90
414 418 0.614697 TTCACTCCCGGCTCAGATGA 60.615 55.000 0.00 0.00 0.00 2.92
415 419 0.460987 GTTCACTCCCGGCTCAGATG 60.461 60.000 0.00 0.00 0.00 2.90
416 420 0.904865 TGTTCACTCCCGGCTCAGAT 60.905 55.000 0.00 0.00 0.00 2.90
417 421 1.533033 TGTTCACTCCCGGCTCAGA 60.533 57.895 0.00 0.00 0.00 3.27
418 422 1.079543 CTGTTCACTCCCGGCTCAG 60.080 63.158 0.00 0.00 0.00 3.35
419 423 0.541063 TACTGTTCACTCCCGGCTCA 60.541 55.000 0.00 0.00 0.00 4.26
420 424 0.606604 TTACTGTTCACTCCCGGCTC 59.393 55.000 0.00 0.00 0.00 4.70
421 425 1.053424 TTTACTGTTCACTCCCGGCT 58.947 50.000 0.00 0.00 0.00 5.52
422 426 2.109425 ATTTACTGTTCACTCCCGGC 57.891 50.000 0.00 0.00 0.00 6.13
423 427 3.670625 TGAATTTACTGTTCACTCCCGG 58.329 45.455 0.00 0.00 31.07 5.73
472 478 5.323371 CTTTCACCACAAGAAAGTTTGGA 57.677 39.130 7.34 0.00 44.24 3.53
481 487 3.817084 CTCAAGCATCTTTCACCACAAGA 59.183 43.478 0.00 0.00 34.74 3.02
497 503 2.158449 CACGGACATCAAGAACTCAAGC 59.842 50.000 0.00 0.00 0.00 4.01
500 506 3.744238 TTCACGGACATCAAGAACTCA 57.256 42.857 0.00 0.00 0.00 3.41
529 535 0.442310 CGTCGGATGTTGAAACGCAT 59.558 50.000 0.00 0.00 0.00 4.73
532 538 0.093026 GCTCGTCGGATGTTGAAACG 59.907 55.000 0.00 0.00 34.80 3.60
544 550 1.139989 TTTTTGCTGAGAGCTCGTCG 58.860 50.000 8.37 1.34 42.97 5.12
587 593 5.505654 CCGAACAGTGCAAAACAGTAATCTT 60.506 40.000 0.00 0.00 0.00 2.40
588 594 4.024048 CCGAACAGTGCAAAACAGTAATCT 60.024 41.667 0.00 0.00 0.00 2.40
589 595 4.024387 TCCGAACAGTGCAAAACAGTAATC 60.024 41.667 0.00 0.00 0.00 1.75
590 596 3.880490 TCCGAACAGTGCAAAACAGTAAT 59.120 39.130 0.00 0.00 0.00 1.89
594 600 1.268539 GGTCCGAACAGTGCAAAACAG 60.269 52.381 0.00 0.00 0.00 3.16
600 606 2.851263 AATTAGGTCCGAACAGTGCA 57.149 45.000 0.00 0.00 0.00 4.57
609 615 5.983118 AGCAAAAAGAACAAAATTAGGTCCG 59.017 36.000 0.00 0.00 0.00 4.79
616 622 6.343703 AGCTCTCAGCAAAAAGAACAAAATT 58.656 32.000 0.00 0.00 45.56 1.82
674 680 0.178767 TGCTTGCGTGCCTGATATCT 59.821 50.000 3.98 0.00 0.00 1.98
682 688 0.730494 GTGAAAGATGCTTGCGTGCC 60.730 55.000 0.00 0.00 0.00 5.01
747 762 5.790593 TCTACACCCTGTGAACAGTAAATC 58.209 41.667 9.49 0.00 42.27 2.17
805 820 2.482142 GGCGTGTTTGGAAAATGGTTCA 60.482 45.455 0.00 0.00 0.00 3.18
847 869 2.996330 GCACCCACCCTAGGCCATT 61.996 63.158 5.01 0.00 0.00 3.16
958 3670 2.696989 TGTAGGCACTGATGATGTGG 57.303 50.000 0.00 0.00 41.52 4.17
988 3700 0.533755 ATGCGCATCCAACTAGGCTC 60.534 55.000 19.28 0.00 37.29 4.70
1009 3721 3.669122 GGCAAGTAAGCGACTATACGATG 59.331 47.826 0.00 0.00 37.44 3.84
1013 3725 3.041492 GACGGCAAGTAAGCGACTATAC 58.959 50.000 0.00 0.00 37.44 1.47
1018 3730 1.280206 AACGACGGCAAGTAAGCGAC 61.280 55.000 0.00 0.00 34.64 5.19
1095 3807 1.818785 GAGGAGTGGCATGAGCAGC 60.819 63.158 0.00 0.00 44.61 5.25
1148 3860 2.543777 AGTGCCTTGCTCGTCTAAAA 57.456 45.000 0.00 0.00 0.00 1.52
1170 3882 4.929819 AATGTGTACATCATGCATGCAT 57.070 36.364 27.46 27.46 35.65 3.96
1172 3884 3.244345 GCAAATGTGTACATCATGCATGC 59.756 43.478 22.25 11.82 43.09 4.06
1587 4317 6.276847 AGGAATATTTGCTAGAGTCTCAACG 58.723 40.000 0.00 0.00 0.00 4.10
1640 4373 4.771114 ATCCACTCGTCCAATATTCCAA 57.229 40.909 0.00 0.00 0.00 3.53
1645 4378 4.899457 TCCTGTAATCCACTCGTCCAATAT 59.101 41.667 0.00 0.00 0.00 1.28
1646 4379 4.283337 TCCTGTAATCCACTCGTCCAATA 58.717 43.478 0.00 0.00 0.00 1.90
1648 4381 2.496070 CTCCTGTAATCCACTCGTCCAA 59.504 50.000 0.00 0.00 0.00 3.53
1649 4382 2.100197 CTCCTGTAATCCACTCGTCCA 58.900 52.381 0.00 0.00 0.00 4.02
1650 4383 2.376109 TCTCCTGTAATCCACTCGTCC 58.624 52.381 0.00 0.00 0.00 4.79
1653 4386 2.030717 CGGATCTCCTGTAATCCACTCG 60.031 54.545 2.61 0.00 41.35 4.18
1678 4995 7.562454 TCCATTATTTTTCGTCCCTTGATAC 57.438 36.000 0.00 0.00 0.00 2.24
1689 5006 8.647226 GTTGTTCCAAGATTCCATTATTTTTCG 58.353 33.333 0.00 0.00 0.00 3.46
1777 5118 5.607119 AAAGTACAGTGATTTTAGCCACG 57.393 39.130 0.00 0.00 38.26 4.94
1871 5607 1.379527 GTACTGGGTAGTGCCATTGC 58.620 55.000 0.00 0.00 37.78 3.56
1887 5623 2.100989 CTGTGGAGGTAGAGTGGGTAC 58.899 57.143 0.00 0.00 0.00 3.34
1895 5631 2.171840 GCTGAAGACTGTGGAGGTAGA 58.828 52.381 0.00 0.00 0.00 2.59
1904 5640 0.610687 GGTGGCTAGCTGAAGACTGT 59.389 55.000 15.72 0.00 0.00 3.55
1905 5641 0.459237 CGGTGGCTAGCTGAAGACTG 60.459 60.000 15.72 5.40 0.00 3.51
1908 5644 1.304962 TCCGGTGGCTAGCTGAAGA 60.305 57.895 15.72 2.88 0.00 2.87
1911 5647 2.759973 CCTCCGGTGGCTAGCTGA 60.760 66.667 15.72 0.00 0.00 4.26
1920 5656 1.612442 TTTCTCTCCCCCTCCGGTG 60.612 63.158 0.00 0.00 0.00 4.94
1921 5657 1.612739 GTTTCTCTCCCCCTCCGGT 60.613 63.158 0.00 0.00 0.00 5.28
2025 5764 6.912203 TTTGTGACAGTTATTCACTCGAAA 57.088 33.333 4.27 0.00 43.30 3.46
2035 5774 5.680619 TCCAGTGAGTTTTGTGACAGTTAT 58.319 37.500 0.00 0.00 0.00 1.89
2161 5918 9.066892 TGACTTCTTGTGTATAAGCATTTTTCT 57.933 29.630 0.00 0.00 0.00 2.52
2162 5919 9.334693 CTGACTTCTTGTGTATAAGCATTTTTC 57.665 33.333 0.00 0.00 0.00 2.29
2163 5920 8.850156 ACTGACTTCTTGTGTATAAGCATTTTT 58.150 29.630 0.00 0.00 0.00 1.94
2164 5921 8.396272 ACTGACTTCTTGTGTATAAGCATTTT 57.604 30.769 0.00 0.00 0.00 1.82
2165 5922 7.986085 ACTGACTTCTTGTGTATAAGCATTT 57.014 32.000 0.00 0.00 0.00 2.32
2166 5923 8.314751 ACTACTGACTTCTTGTGTATAAGCATT 58.685 33.333 0.00 0.00 0.00 3.56
2167 5924 7.841956 ACTACTGACTTCTTGTGTATAAGCAT 58.158 34.615 0.00 0.00 0.00 3.79
2168 5925 7.228314 ACTACTGACTTCTTGTGTATAAGCA 57.772 36.000 0.00 0.00 0.00 3.91
2169 5926 7.432838 GCTACTACTGACTTCTTGTGTATAAGC 59.567 40.741 0.00 0.00 0.00 3.09
2170 5927 7.640630 CGCTACTACTGACTTCTTGTGTATAAG 59.359 40.741 0.00 0.00 0.00 1.73
2171 5928 7.470079 CGCTACTACTGACTTCTTGTGTATAA 58.530 38.462 0.00 0.00 0.00 0.98
2172 5929 6.457934 GCGCTACTACTGACTTCTTGTGTATA 60.458 42.308 0.00 0.00 0.00 1.47
2173 5930 5.676584 GCGCTACTACTGACTTCTTGTGTAT 60.677 44.000 0.00 0.00 0.00 2.29
2174 5931 4.379186 GCGCTACTACTGACTTCTTGTGTA 60.379 45.833 0.00 0.00 0.00 2.90
2175 5932 3.612004 GCGCTACTACTGACTTCTTGTGT 60.612 47.826 0.00 0.00 0.00 3.72
2176 5933 2.917971 GCGCTACTACTGACTTCTTGTG 59.082 50.000 0.00 0.00 0.00 3.33
2177 5934 2.820787 AGCGCTACTACTGACTTCTTGT 59.179 45.455 8.99 0.00 0.00 3.16
2178 5935 3.495670 AGCGCTACTACTGACTTCTTG 57.504 47.619 8.99 0.00 0.00 3.02
2179 5936 4.522722 AAAGCGCTACTACTGACTTCTT 57.477 40.909 12.05 0.00 0.00 2.52
2180 5937 4.522722 AAAAGCGCTACTACTGACTTCT 57.477 40.909 12.05 0.00 0.00 2.85
2181 5938 6.889019 ATAAAAAGCGCTACTACTGACTTC 57.111 37.500 12.05 0.00 0.00 3.01
2182 5939 8.248945 TCTTATAAAAAGCGCTACTACTGACTT 58.751 33.333 12.05 0.00 0.00 3.01
2183 5940 7.769220 TCTTATAAAAAGCGCTACTACTGACT 58.231 34.615 12.05 0.00 0.00 3.41
2184 5941 7.982371 TCTTATAAAAAGCGCTACTACTGAC 57.018 36.000 12.05 0.00 0.00 3.51
2185 5942 8.991243 TTTCTTATAAAAAGCGCTACTACTGA 57.009 30.769 12.05 0.00 0.00 3.41
2186 5943 7.846592 GCTTTCTTATAAAAAGCGCTACTACTG 59.153 37.037 12.05 0.00 46.31 2.74
2187 5944 7.907194 GCTTTCTTATAAAAAGCGCTACTACT 58.093 34.615 12.05 0.00 46.31 2.57
2197 5954 4.263911 GCAGCAGCGCTTTCTTATAAAAAG 59.736 41.667 7.50 12.20 36.40 2.27
2198 5955 4.165779 GCAGCAGCGCTTTCTTATAAAAA 58.834 39.130 7.50 0.00 36.40 1.94
2199 5956 3.758300 GCAGCAGCGCTTTCTTATAAAA 58.242 40.909 7.50 0.00 36.40 1.52
2200 5957 3.405170 GCAGCAGCGCTTTCTTATAAA 57.595 42.857 7.50 0.00 36.40 1.40
2213 5970 2.032808 GCTACCGTTATTTAGCAGCAGC 60.033 50.000 0.00 0.00 40.48 5.25
2214 5971 2.218759 CGCTACCGTTATTTAGCAGCAG 59.781 50.000 0.00 0.00 40.75 4.24
2215 5972 2.198406 CGCTACCGTTATTTAGCAGCA 58.802 47.619 0.00 0.00 40.75 4.41
2216 5973 1.070776 GCGCTACCGTTATTTAGCAGC 60.071 52.381 0.00 2.57 40.75 5.25
2217 5974 2.218759 CAGCGCTACCGTTATTTAGCAG 59.781 50.000 10.99 0.00 40.75 4.24
2218 5975 2.198406 CAGCGCTACCGTTATTTAGCA 58.802 47.619 10.99 0.00 40.75 3.49
2219 5976 1.525619 CCAGCGCTACCGTTATTTAGC 59.474 52.381 10.99 0.00 37.87 3.09
2220 5977 2.538449 CACCAGCGCTACCGTTATTTAG 59.462 50.000 10.99 0.00 36.67 1.85
2221 5978 2.166050 TCACCAGCGCTACCGTTATTTA 59.834 45.455 10.99 0.00 36.67 1.40
2222 5979 1.066716 TCACCAGCGCTACCGTTATTT 60.067 47.619 10.99 0.00 36.67 1.40
2223 5980 0.533491 TCACCAGCGCTACCGTTATT 59.467 50.000 10.99 0.00 36.67 1.40
2224 5981 0.179119 GTCACCAGCGCTACCGTTAT 60.179 55.000 10.99 0.00 36.67 1.89
2225 5982 1.213537 GTCACCAGCGCTACCGTTA 59.786 57.895 10.99 0.00 36.67 3.18
2226 5983 2.048503 GTCACCAGCGCTACCGTT 60.049 61.111 10.99 0.00 36.67 4.44
2227 5984 2.989824 AGTCACCAGCGCTACCGT 60.990 61.111 10.99 3.43 36.67 4.83
2228 5985 2.486636 TTCAGTCACCAGCGCTACCG 62.487 60.000 10.99 2.66 37.57 4.02
2229 5986 0.737715 CTTCAGTCACCAGCGCTACC 60.738 60.000 10.99 0.00 0.00 3.18
2230 5987 0.243907 TCTTCAGTCACCAGCGCTAC 59.756 55.000 10.99 4.35 0.00 3.58
2231 5988 0.528017 CTCTTCAGTCACCAGCGCTA 59.472 55.000 10.99 0.00 0.00 4.26
2232 5989 1.291588 CTCTTCAGTCACCAGCGCT 59.708 57.895 2.64 2.64 0.00 5.92
2233 5990 2.386660 GCTCTTCAGTCACCAGCGC 61.387 63.158 0.00 0.00 0.00 5.92
2234 5991 2.091112 CGCTCTTCAGTCACCAGCG 61.091 63.158 0.00 0.00 46.11 5.18
2235 5992 2.386660 GCGCTCTTCAGTCACCAGC 61.387 63.158 0.00 0.00 0.00 4.85
2236 5993 1.013005 CAGCGCTCTTCAGTCACCAG 61.013 60.000 7.13 0.00 0.00 4.00
2237 5994 1.005748 CAGCGCTCTTCAGTCACCA 60.006 57.895 7.13 0.00 0.00 4.17
2238 5995 2.386660 GCAGCGCTCTTCAGTCACC 61.387 63.158 7.13 0.00 0.00 4.02
2239 5996 0.109086 TAGCAGCGCTCTTCAGTCAC 60.109 55.000 7.13 0.00 40.44 3.67
2240 5997 0.109086 GTAGCAGCGCTCTTCAGTCA 60.109 55.000 7.13 0.00 40.44 3.41
2241 5998 0.109086 TGTAGCAGCGCTCTTCAGTC 60.109 55.000 7.13 0.00 40.44 3.51
2242 5999 0.318441 TTGTAGCAGCGCTCTTCAGT 59.682 50.000 7.13 0.00 40.44 3.41
2243 6000 1.649664 ATTGTAGCAGCGCTCTTCAG 58.350 50.000 7.13 0.00 40.44 3.02
2244 6001 2.002586 GAATTGTAGCAGCGCTCTTCA 58.997 47.619 7.13 9.44 40.44 3.02
2245 6002 2.002586 TGAATTGTAGCAGCGCTCTTC 58.997 47.619 7.13 6.74 40.44 2.87
2246 6003 2.099141 TGAATTGTAGCAGCGCTCTT 57.901 45.000 7.13 0.00 40.44 2.85
2247 6004 1.938577 CATGAATTGTAGCAGCGCTCT 59.061 47.619 7.13 10.92 40.44 4.09
2248 6005 1.667724 ACATGAATTGTAGCAGCGCTC 59.332 47.619 7.13 2.24 40.44 5.03
2249 6006 1.742761 ACATGAATTGTAGCAGCGCT 58.257 45.000 2.64 2.64 43.41 5.92
2257 6014 3.802139 GCGCTACTGCTACATGAATTGTA 59.198 43.478 0.00 0.00 39.87 2.41
2258 6015 2.609459 GCGCTACTGCTACATGAATTGT 59.391 45.455 0.00 0.00 42.62 2.71
2259 6016 2.868583 AGCGCTACTGCTACATGAATTG 59.131 45.455 8.99 0.00 45.14 2.32
2260 6017 3.185246 AGCGCTACTGCTACATGAATT 57.815 42.857 8.99 0.00 45.14 2.17
2261 6018 2.898729 AGCGCTACTGCTACATGAAT 57.101 45.000 8.99 0.00 45.14 2.57
2262 6019 2.672961 AAGCGCTACTGCTACATGAA 57.327 45.000 12.05 0.00 46.60 2.57
2263 6020 2.672874 CAAAAGCGCTACTGCTACATGA 59.327 45.455 12.05 0.00 46.60 3.07
2264 6021 2.416547 ACAAAAGCGCTACTGCTACATG 59.583 45.455 12.05 2.12 46.60 3.21
2265 6022 2.699954 ACAAAAGCGCTACTGCTACAT 58.300 42.857 12.05 0.00 46.60 2.29
2266 6023 2.163818 ACAAAAGCGCTACTGCTACA 57.836 45.000 12.05 0.00 46.60 2.74
2267 6024 4.859629 ATAACAAAAGCGCTACTGCTAC 57.140 40.909 12.05 0.00 46.60 3.58
2268 6025 6.971527 TTTATAACAAAAGCGCTACTGCTA 57.028 33.333 12.05 7.31 46.60 3.49
2270 6027 6.921332 TTTTTATAACAAAAGCGCTACTGC 57.079 33.333 12.05 0.00 0.00 4.40
2290 6047 6.400568 TGGCAACTATAGTAGTAGCGTTTTT 58.599 36.000 5.65 0.00 38.26 1.94
2291 6048 5.969423 TGGCAACTATAGTAGTAGCGTTTT 58.031 37.500 5.65 0.00 38.26 2.43
2292 6049 5.587388 TGGCAACTATAGTAGTAGCGTTT 57.413 39.130 5.65 0.00 38.26 3.60
2293 6050 5.346522 GTTGGCAACTATAGTAGTAGCGTT 58.653 41.667 22.66 0.00 38.26 4.84
2294 6051 4.497006 CGTTGGCAACTATAGTAGTAGCGT 60.497 45.833 26.26 0.00 38.26 5.07
2295 6052 3.973135 CGTTGGCAACTATAGTAGTAGCG 59.027 47.826 26.26 6.25 38.26 4.26
2296 6053 4.202090 ACCGTTGGCAACTATAGTAGTAGC 60.202 45.833 26.26 8.21 38.26 3.58
2297 6054 5.511234 ACCGTTGGCAACTATAGTAGTAG 57.489 43.478 26.26 8.01 38.26 2.57
2298 6055 4.035558 CGACCGTTGGCAACTATAGTAGTA 59.964 45.833 26.26 0.00 38.26 1.82
2299 6056 3.181493 CGACCGTTGGCAACTATAGTAGT 60.181 47.826 26.26 12.39 41.73 2.73
2300 6057 3.369385 CGACCGTTGGCAACTATAGTAG 58.631 50.000 26.26 14.64 37.61 2.57
2301 6058 2.480073 GCGACCGTTGGCAACTATAGTA 60.480 50.000 26.26 0.00 37.61 1.82
2302 6059 1.738030 GCGACCGTTGGCAACTATAGT 60.738 52.381 26.26 17.78 37.61 2.12
2303 6060 0.928229 GCGACCGTTGGCAACTATAG 59.072 55.000 26.26 15.48 37.61 1.31
2304 6061 0.246910 TGCGACCGTTGGCAACTATA 59.753 50.000 26.26 5.79 35.98 1.31
2305 6062 0.392461 ATGCGACCGTTGGCAACTAT 60.392 50.000 26.26 14.99 43.26 2.12
2306 6063 1.004320 ATGCGACCGTTGGCAACTA 60.004 52.632 26.26 7.59 43.26 2.24
2307 6064 2.281484 ATGCGACCGTTGGCAACT 60.281 55.556 26.26 10.29 43.26 3.16
2308 6065 2.126888 CATGCGACCGTTGGCAAC 60.127 61.111 20.27 20.27 43.26 4.17
2309 6066 3.361158 CCATGCGACCGTTGGCAA 61.361 61.111 0.00 0.00 43.26 4.52
2312 6069 3.803082 CTGCCATGCGACCGTTGG 61.803 66.667 8.48 8.48 0.00 3.77
2313 6070 3.049674 ACTGCCATGCGACCGTTG 61.050 61.111 0.00 0.00 0.00 4.10
2314 6071 3.049674 CACTGCCATGCGACCGTT 61.050 61.111 0.00 0.00 0.00 4.44
2321 6078 5.423015 ACTAGTATATATGCACTGCCATGC 58.577 41.667 3.52 2.40 46.32 4.06
2322 6079 6.699204 GCTACTAGTATATATGCACTGCCATG 59.301 42.308 2.33 0.00 0.00 3.66
2323 6080 6.460261 CGCTACTAGTATATATGCACTGCCAT 60.460 42.308 2.33 0.00 0.00 4.40
2324 6081 5.163652 CGCTACTAGTATATATGCACTGCCA 60.164 44.000 2.33 0.00 0.00 4.92
2325 6082 5.274718 CGCTACTAGTATATATGCACTGCC 58.725 45.833 2.33 0.00 0.00 4.85
2326 6083 4.735822 GCGCTACTAGTATATATGCACTGC 59.264 45.833 2.33 0.00 0.00 4.40
2327 6084 6.125327 AGCGCTACTAGTATATATGCACTG 57.875 41.667 8.99 0.00 0.00 3.66
2328 6085 6.151312 ACAAGCGCTACTAGTATATATGCACT 59.849 38.462 12.05 0.00 0.00 4.40
2329 6086 6.323266 ACAAGCGCTACTAGTATATATGCAC 58.677 40.000 12.05 0.00 0.00 4.57
2330 6087 6.510879 ACAAGCGCTACTAGTATATATGCA 57.489 37.500 12.05 0.00 0.00 3.96
2331 6088 9.517609 AATAACAAGCGCTACTAGTATATATGC 57.482 33.333 12.05 2.07 0.00 3.14
2338 6095 8.598075 GCTTTTTAATAACAAGCGCTACTAGTA 58.402 33.333 12.05 3.29 34.01 1.82
2339 6096 7.461918 GCTTTTTAATAACAAGCGCTACTAGT 58.538 34.615 12.05 4.40 34.01 2.57
2340 6097 7.878408 GCTTTTTAATAACAAGCGCTACTAG 57.122 36.000 12.05 3.65 34.01 2.57
2348 6105 5.003496 GCAGTAGCGCTTTTTAATAACAAGC 59.997 40.000 18.68 12.45 39.70 4.01
2349 6106 6.540323 GCAGTAGCGCTTTTTAATAACAAG 57.460 37.500 18.68 3.01 0.00 3.16
2379 6136 1.359848 ATACGGCGCTATTGCTATGC 58.640 50.000 6.90 0.00 36.97 3.14
2380 6137 3.061295 CAGAATACGGCGCTATTGCTATG 59.939 47.826 6.90 3.64 36.97 2.23
2381 6138 3.056821 TCAGAATACGGCGCTATTGCTAT 60.057 43.478 6.90 0.00 36.97 2.97
2382 6139 2.295070 TCAGAATACGGCGCTATTGCTA 59.705 45.455 6.90 0.00 36.97 3.49
2383 6140 1.068588 TCAGAATACGGCGCTATTGCT 59.931 47.619 6.90 7.38 36.97 3.91
2384 6141 1.192534 GTCAGAATACGGCGCTATTGC 59.807 52.381 6.90 5.47 0.00 3.56
2385 6142 1.452025 CGTCAGAATACGGCGCTATTG 59.548 52.381 6.90 0.00 39.19 1.90
2386 6143 1.335810 TCGTCAGAATACGGCGCTATT 59.664 47.619 6.90 10.50 43.05 1.73
2387 6144 0.949397 TCGTCAGAATACGGCGCTAT 59.051 50.000 6.90 1.10 43.05 2.97
2388 6145 0.306840 CTCGTCAGAATACGGCGCTA 59.693 55.000 6.90 0.00 43.05 4.26
2389 6146 1.064296 CTCGTCAGAATACGGCGCT 59.936 57.895 6.90 0.00 43.05 5.92
2390 6147 2.577785 GCTCGTCAGAATACGGCGC 61.578 63.158 6.90 0.00 43.05 6.53
2391 6148 3.601981 GCTCGTCAGAATACGGCG 58.398 61.111 4.80 4.80 43.05 6.46
2392 6149 2.577785 GCGCTCGTCAGAATACGGC 61.578 63.158 0.00 0.00 43.05 5.68
2393 6150 0.306840 TAGCGCTCGTCAGAATACGG 59.693 55.000 16.34 0.00 43.05 4.02
2394 6151 1.003759 AGTAGCGCTCGTCAGAATACG 60.004 52.381 16.34 0.00 44.19 3.06
2395 6152 2.376956 CAGTAGCGCTCGTCAGAATAC 58.623 52.381 16.34 2.38 0.00 1.89
2396 6153 1.268589 GCAGTAGCGCTCGTCAGAATA 60.269 52.381 16.34 0.00 0.00 1.75
2397 6154 0.526524 GCAGTAGCGCTCGTCAGAAT 60.527 55.000 16.34 0.00 0.00 2.40
2398 6155 1.154016 GCAGTAGCGCTCGTCAGAA 60.154 57.895 16.34 0.00 0.00 3.02
2399 6156 2.485582 GCAGTAGCGCTCGTCAGA 59.514 61.111 16.34 0.00 0.00 3.27
2416 6173 5.581085 AGAAACAACCGCTACTGCTATTTAG 59.419 40.000 0.00 0.00 36.97 1.85
2417 6174 5.484715 AGAAACAACCGCTACTGCTATTTA 58.515 37.500 0.00 0.00 36.97 1.40
2418 6175 4.324267 AGAAACAACCGCTACTGCTATTT 58.676 39.130 0.00 0.00 36.97 1.40
2419 6176 3.939066 AGAAACAACCGCTACTGCTATT 58.061 40.909 0.00 0.00 36.97 1.73
2420 6177 3.611766 AGAAACAACCGCTACTGCTAT 57.388 42.857 0.00 0.00 36.97 2.97
2421 6178 4.524316 TTAGAAACAACCGCTACTGCTA 57.476 40.909 0.00 0.00 36.97 3.49
2422 6179 3.396260 TTAGAAACAACCGCTACTGCT 57.604 42.857 0.00 0.00 36.97 4.24
2423 6180 3.249080 TGTTTAGAAACAACCGCTACTGC 59.751 43.478 5.36 0.00 45.17 4.40
2434 6191 5.130292 AGTAGTAGCGCTGTTTAGAAACA 57.870 39.130 22.90 7.56 45.88 2.83
2435 6192 5.226772 CGTAGTAGTAGCGCTGTTTAGAAAC 59.773 44.000 22.90 7.46 39.33 2.78
2436 6193 5.327091 CGTAGTAGTAGCGCTGTTTAGAAA 58.673 41.667 22.90 0.00 0.00 2.52
2437 6194 4.201851 CCGTAGTAGTAGCGCTGTTTAGAA 60.202 45.833 22.90 0.00 0.00 2.10
2438 6195 3.310774 CCGTAGTAGTAGCGCTGTTTAGA 59.689 47.826 22.90 0.00 0.00 2.10
2439 6196 3.064545 ACCGTAGTAGTAGCGCTGTTTAG 59.935 47.826 22.90 3.60 0.00 1.85
2440 6197 3.009723 ACCGTAGTAGTAGCGCTGTTTA 58.990 45.455 22.90 6.72 0.00 2.01
2441 6198 1.815003 ACCGTAGTAGTAGCGCTGTTT 59.185 47.619 22.90 7.82 0.00 2.83
2442 6199 1.457346 ACCGTAGTAGTAGCGCTGTT 58.543 50.000 22.90 10.65 0.00 3.16
2443 6200 1.457346 AACCGTAGTAGTAGCGCTGT 58.543 50.000 22.90 10.02 0.00 4.40
2444 6201 2.286654 GGTAACCGTAGTAGTAGCGCTG 60.287 54.545 22.90 1.41 0.00 5.18
2445 6202 1.943340 GGTAACCGTAGTAGTAGCGCT 59.057 52.381 17.26 17.26 0.00 5.92
2446 6203 1.943340 AGGTAACCGTAGTAGTAGCGC 59.057 52.381 0.00 0.00 37.17 5.92
2447 6204 5.106908 GGATAAGGTAACCGTAGTAGTAGCG 60.107 48.000 0.00 0.00 37.17 4.26
2448 6205 5.765182 TGGATAAGGTAACCGTAGTAGTAGC 59.235 44.000 0.00 0.00 37.17 3.58
2449 6206 6.073548 CGTGGATAAGGTAACCGTAGTAGTAG 60.074 46.154 0.00 0.00 37.17 2.57
2450 6207 5.758296 CGTGGATAAGGTAACCGTAGTAGTA 59.242 44.000 0.00 0.00 37.17 1.82
2451 6208 4.576463 CGTGGATAAGGTAACCGTAGTAGT 59.424 45.833 0.00 0.00 37.17 2.73
2452 6209 4.555511 GCGTGGATAAGGTAACCGTAGTAG 60.556 50.000 0.00 0.00 37.17 2.57
2453 6210 3.315191 GCGTGGATAAGGTAACCGTAGTA 59.685 47.826 0.00 0.00 37.17 1.82
2454 6211 2.099756 GCGTGGATAAGGTAACCGTAGT 59.900 50.000 0.00 0.00 37.17 2.73
2455 6212 2.544486 GGCGTGGATAAGGTAACCGTAG 60.544 54.545 0.00 0.00 37.17 3.51
2456 6213 1.408702 GGCGTGGATAAGGTAACCGTA 59.591 52.381 0.00 0.00 37.17 4.02
2457 6214 0.176449 GGCGTGGATAAGGTAACCGT 59.824 55.000 0.00 0.00 37.17 4.83
2458 6215 0.872881 CGGCGTGGATAAGGTAACCG 60.873 60.000 0.00 0.00 37.17 4.44
2459 6216 1.156034 GCGGCGTGGATAAGGTAACC 61.156 60.000 9.37 0.00 37.17 2.85
2460 6217 1.485032 CGCGGCGTGGATAAGGTAAC 61.485 60.000 15.36 0.00 0.00 2.50
2461 6218 1.227031 CGCGGCGTGGATAAGGTAA 60.227 57.895 15.36 0.00 0.00 2.85
2462 6219 2.414179 CGCGGCGTGGATAAGGTA 59.586 61.111 15.36 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.