Multiple sequence alignment - TraesCS2D01G597900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G597900 chr2D 100.000 4019 0 0 1 4019 650319135 650323153 0.000000e+00 7422
1 TraesCS2D01G597900 chr2D 99.429 175 0 1 1 175 284514942 284515115 2.330000e-82 316
2 TraesCS2D01G597900 chr2A 88.366 3885 250 83 217 4018 774577046 774573281 0.000000e+00 4484
3 TraesCS2D01G597900 chr2B 89.836 2076 148 31 1966 4017 786225147 786227183 0.000000e+00 2606
4 TraesCS2D01G597900 chr2B 83.343 1783 122 80 265 1959 786223210 786224905 0.000000e+00 1485
5 TraesCS2D01G597900 chrUn 88.251 366 29 10 2763 3119 96707904 96707544 3.710000e-115 425
6 TraesCS2D01G597900 chrUn 87.000 300 34 4 2447 2741 96731875 96731576 2.310000e-87 333
7 TraesCS2D01G597900 chrUn 85.714 140 17 2 3119 3258 96702250 96702114 1.160000e-30 145
8 TraesCS2D01G597900 chr6B 88.650 326 32 5 2753 3078 47899051 47898731 3.770000e-105 392
9 TraesCS2D01G597900 chr6B 98.324 179 3 0 1 179 519324062 519323884 8.380000e-82 315
10 TraesCS2D01G597900 chr6B 79.310 232 28 14 3154 3380 47898727 47898511 1.160000e-30 145
11 TraesCS2D01G597900 chr7D 100.000 173 0 0 1 173 351660009 351659837 1.800000e-83 320
12 TraesCS2D01G597900 chr3D 100.000 172 0 0 1 172 38221864 38221693 6.480000e-83 318
13 TraesCS2D01G597900 chr6D 99.425 174 1 0 1 174 245016646 245016473 2.330000e-82 316
14 TraesCS2D01G597900 chr6D 99.429 175 0 1 1 175 426840680 426840507 2.330000e-82 316
15 TraesCS2D01G597900 chr4D 99.425 174 1 0 1 174 1173960 1173787 2.330000e-82 316
16 TraesCS2D01G597900 chr4D 99.429 175 0 1 1 175 445334986 445334813 2.330000e-82 316
17 TraesCS2D01G597900 chr1D 99.429 175 0 1 1 175 240991978 240992151 2.330000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G597900 chr2D 650319135 650323153 4018 False 7422.0 7422 100.0000 1 4019 1 chr2D.!!$F2 4018
1 TraesCS2D01G597900 chr2A 774573281 774577046 3765 True 4484.0 4484 88.3660 217 4018 1 chr2A.!!$R1 3801
2 TraesCS2D01G597900 chr2B 786223210 786227183 3973 False 2045.5 2606 86.5895 265 4017 2 chr2B.!!$F1 3752
3 TraesCS2D01G597900 chr6B 47898511 47899051 540 True 268.5 392 83.9800 2753 3380 2 chr6B.!!$R2 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 717 0.035534 TCCATCCATCGGTGGTGTTG 60.036 55.0 15.92 10.96 46.16 3.33 F
649 719 0.322456 CATCCATCGGTGGTGTTGGT 60.322 55.0 15.92 0.00 46.16 3.67 F
650 720 0.322456 ATCCATCGGTGGTGTTGGTG 60.322 55.0 15.92 0.00 46.16 4.17 F
858 972 0.324368 ATCCCTTCTTTTTCCGGCCC 60.324 55.0 0.00 0.00 0.00 5.80 F
2563 2959 0.395862 ATCAGACCGACGGGATCAGT 60.396 55.0 20.00 0.00 36.97 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 2463 0.850100 TTCCAGCTGAACCAGGGAAA 59.150 50.000 17.39 0.00 32.00 3.13 R
2351 2742 1.047002 AGGAAGGAGGATGATCTGCG 58.953 55.000 0.00 0.00 0.00 5.18 R
2548 2944 1.139095 GACACTGATCCCGTCGGTC 59.861 63.158 11.06 2.48 44.70 4.79 R
2590 2986 2.291153 ACCCAGAACACCTCCAATGATG 60.291 50.000 0.00 0.00 0.00 3.07 R
3923 4336 0.950555 GAGACGTGCCATTGTGCAGA 60.951 55.000 0.00 0.00 43.02 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.691976 ACGTCCAACATCCTCTGTTCA 59.308 47.619 0.00 0.00 44.99 3.18
21 22 2.303022 ACGTCCAACATCCTCTGTTCAT 59.697 45.455 0.00 0.00 44.99 2.57
22 23 2.674852 CGTCCAACATCCTCTGTTCATG 59.325 50.000 0.00 0.00 44.99 3.07
23 24 3.679389 GTCCAACATCCTCTGTTCATGT 58.321 45.455 0.00 0.00 44.99 3.21
24 25 3.686726 GTCCAACATCCTCTGTTCATGTC 59.313 47.826 0.00 0.00 44.99 3.06
25 26 3.584406 TCCAACATCCTCTGTTCATGTCT 59.416 43.478 0.00 0.00 44.99 3.41
27 28 4.321718 CAACATCCTCTGTTCATGTCTGT 58.678 43.478 0.00 0.00 44.99 3.41
28 29 4.630644 ACATCCTCTGTTCATGTCTGTT 57.369 40.909 0.00 0.00 32.90 3.16
29 30 4.978099 ACATCCTCTGTTCATGTCTGTTT 58.022 39.130 0.00 0.00 32.90 2.83
30 31 4.999950 ACATCCTCTGTTCATGTCTGTTTC 59.000 41.667 0.00 0.00 32.90 2.78
31 32 4.963318 TCCTCTGTTCATGTCTGTTTCT 57.037 40.909 0.00 0.00 0.00 2.52
32 33 6.014242 ACATCCTCTGTTCATGTCTGTTTCTA 60.014 38.462 0.00 0.00 32.90 2.10
33 34 5.784177 TCCTCTGTTCATGTCTGTTTCTAC 58.216 41.667 0.00 0.00 0.00 2.59
34 35 5.304357 TCCTCTGTTCATGTCTGTTTCTACA 59.696 40.000 0.00 0.00 0.00 2.74
47 48 6.946229 CTGTTTCTACAGCTATTGTTACGT 57.054 37.500 0.00 0.00 44.81 3.57
48 49 6.699895 TGTTTCTACAGCTATTGTTACGTG 57.300 37.500 0.00 0.00 41.29 4.49
49 50 6.218019 TGTTTCTACAGCTATTGTTACGTGT 58.782 36.000 0.00 0.00 41.29 4.49
50 51 6.702723 TGTTTCTACAGCTATTGTTACGTGTT 59.297 34.615 0.00 0.00 41.29 3.32
51 52 7.225145 TGTTTCTACAGCTATTGTTACGTGTTT 59.775 33.333 0.00 0.00 41.29 2.83
52 53 6.699895 TCTACAGCTATTGTTACGTGTTTG 57.300 37.500 0.00 0.00 41.29 2.93
53 54 4.141855 ACAGCTATTGTTACGTGTTTGC 57.858 40.909 0.00 0.00 36.31 3.68
54 55 3.813166 ACAGCTATTGTTACGTGTTTGCT 59.187 39.130 0.00 0.00 36.31 3.91
55 56 4.151070 CAGCTATTGTTACGTGTTTGCTG 58.849 43.478 0.00 5.38 39.16 4.41
56 57 2.908626 GCTATTGTTACGTGTTTGCTGC 59.091 45.455 0.00 0.00 0.00 5.25
57 58 3.364964 GCTATTGTTACGTGTTTGCTGCT 60.365 43.478 0.00 0.00 0.00 4.24
58 59 2.466870 TTGTTACGTGTTTGCTGCTG 57.533 45.000 0.00 0.00 0.00 4.41
59 60 1.374560 TGTTACGTGTTTGCTGCTGT 58.625 45.000 0.00 0.00 0.00 4.40
60 61 1.740585 TGTTACGTGTTTGCTGCTGTT 59.259 42.857 0.00 0.00 0.00 3.16
61 62 2.937149 TGTTACGTGTTTGCTGCTGTTA 59.063 40.909 0.00 0.00 0.00 2.41
62 63 3.562141 TGTTACGTGTTTGCTGCTGTTAT 59.438 39.130 0.00 0.00 0.00 1.89
63 64 2.686558 ACGTGTTTGCTGCTGTTATG 57.313 45.000 0.00 0.00 0.00 1.90
64 65 1.330306 CGTGTTTGCTGCTGTTATGC 58.670 50.000 0.00 0.00 0.00 3.14
65 66 1.334870 CGTGTTTGCTGCTGTTATGCA 60.335 47.619 0.00 0.00 41.05 3.96
66 67 2.669113 CGTGTTTGCTGCTGTTATGCAT 60.669 45.455 3.79 3.79 42.48 3.96
67 68 2.664568 GTGTTTGCTGCTGTTATGCATG 59.335 45.455 10.16 0.00 42.48 4.06
68 69 2.296752 TGTTTGCTGCTGTTATGCATGT 59.703 40.909 10.16 0.00 42.48 3.21
69 70 2.919229 GTTTGCTGCTGTTATGCATGTC 59.081 45.455 10.16 2.63 42.48 3.06
70 71 2.118313 TGCTGCTGTTATGCATGTCT 57.882 45.000 10.16 0.00 42.48 3.41
71 72 2.439409 TGCTGCTGTTATGCATGTCTT 58.561 42.857 10.16 0.00 42.48 3.01
72 73 2.162809 TGCTGCTGTTATGCATGTCTTG 59.837 45.455 10.16 0.00 42.48 3.02
87 88 6.551385 CATGTCTTGCTGTTCTTCTAGTTT 57.449 37.500 0.00 0.00 0.00 2.66
88 89 5.991328 TGTCTTGCTGTTCTTCTAGTTTG 57.009 39.130 0.00 0.00 0.00 2.93
89 90 4.273480 TGTCTTGCTGTTCTTCTAGTTTGC 59.727 41.667 0.00 0.00 0.00 3.68
90 91 4.513318 GTCTTGCTGTTCTTCTAGTTTGCT 59.487 41.667 0.00 0.00 0.00 3.91
91 92 5.696724 GTCTTGCTGTTCTTCTAGTTTGCTA 59.303 40.000 0.00 0.00 0.00 3.49
92 93 5.928839 TCTTGCTGTTCTTCTAGTTTGCTAG 59.071 40.000 0.00 0.00 44.60 3.42
104 105 7.194607 TCTAGTTTGCTAGATTATTGCATGC 57.805 36.000 11.82 11.82 46.25 4.06
105 106 6.994496 TCTAGTTTGCTAGATTATTGCATGCT 59.006 34.615 20.33 1.26 46.25 3.79
106 107 8.150296 TCTAGTTTGCTAGATTATTGCATGCTA 58.850 33.333 20.33 12.49 46.25 3.49
107 108 7.199541 AGTTTGCTAGATTATTGCATGCTAG 57.800 36.000 20.33 11.08 39.44 3.42
108 109 6.769822 AGTTTGCTAGATTATTGCATGCTAGT 59.230 34.615 20.33 7.25 39.44 2.57
109 110 7.933577 AGTTTGCTAGATTATTGCATGCTAGTA 59.066 33.333 20.33 6.90 39.44 1.82
110 111 8.725148 GTTTGCTAGATTATTGCATGCTAGTAT 58.275 33.333 20.33 8.74 39.44 2.12
111 112 8.484641 TTGCTAGATTATTGCATGCTAGTATC 57.515 34.615 20.33 16.54 39.44 2.24
112 113 7.845037 TGCTAGATTATTGCATGCTAGTATCT 58.155 34.615 20.33 21.74 34.60 1.98
113 114 7.978414 TGCTAGATTATTGCATGCTAGTATCTC 59.022 37.037 22.52 14.61 34.60 2.75
114 115 8.196771 GCTAGATTATTGCATGCTAGTATCTCT 58.803 37.037 22.52 16.16 33.01 3.10
117 118 8.814931 AGATTATTGCATGCTAGTATCTCTTCT 58.185 33.333 20.33 5.38 0.00 2.85
120 121 6.968263 TTGCATGCTAGTATCTCTTCTAGT 57.032 37.500 20.33 0.00 36.84 2.57
121 122 6.567687 TGCATGCTAGTATCTCTTCTAGTC 57.432 41.667 20.33 0.00 36.84 2.59
122 123 6.064717 TGCATGCTAGTATCTCTTCTAGTCA 58.935 40.000 20.33 0.00 36.84 3.41
123 124 6.718912 TGCATGCTAGTATCTCTTCTAGTCAT 59.281 38.462 20.33 0.00 36.84 3.06
124 125 7.028962 GCATGCTAGTATCTCTTCTAGTCATG 58.971 42.308 11.37 19.40 42.65 3.07
125 126 7.094420 GCATGCTAGTATCTCTTCTAGTCATGA 60.094 40.741 23.39 0.00 42.55 3.07
126 127 8.791675 CATGCTAGTATCTCTTCTAGTCATGAA 58.208 37.037 19.20 0.00 42.55 2.57
127 128 8.932434 TGCTAGTATCTCTTCTAGTCATGAAT 57.068 34.615 0.00 0.00 36.84 2.57
128 129 9.360901 TGCTAGTATCTCTTCTAGTCATGAATT 57.639 33.333 0.00 0.00 36.84 2.17
155 156 9.807649 ATTTACTGGAATTAATCATGAACTTGC 57.192 29.630 0.00 0.00 0.00 4.01
156 157 6.212888 ACTGGAATTAATCATGAACTTGCC 57.787 37.500 0.00 0.00 0.00 4.52
157 158 5.954150 ACTGGAATTAATCATGAACTTGCCT 59.046 36.000 0.00 0.00 0.00 4.75
158 159 7.118723 ACTGGAATTAATCATGAACTTGCCTA 58.881 34.615 0.00 0.00 0.00 3.93
159 160 7.615365 ACTGGAATTAATCATGAACTTGCCTAA 59.385 33.333 0.00 0.00 0.00 2.69
160 161 8.537728 TGGAATTAATCATGAACTTGCCTAAT 57.462 30.769 0.00 0.00 0.00 1.73
161 162 9.639563 TGGAATTAATCATGAACTTGCCTAATA 57.360 29.630 0.00 0.00 0.00 0.98
166 167 9.639563 TTAATCATGAACTTGCCTAATATTCCA 57.360 29.630 0.00 0.00 0.00 3.53
167 168 8.537728 AATCATGAACTTGCCTAATATTCCAA 57.462 30.769 0.00 0.00 0.00 3.53
168 169 7.333528 TCATGAACTTGCCTAATATTCCAAC 57.666 36.000 0.00 0.00 0.00 3.77
169 170 6.889177 TCATGAACTTGCCTAATATTCCAACA 59.111 34.615 0.00 0.00 0.00 3.33
170 171 6.509418 TGAACTTGCCTAATATTCCAACAC 57.491 37.500 0.00 0.00 0.00 3.32
171 172 6.245408 TGAACTTGCCTAATATTCCAACACT 58.755 36.000 0.00 0.00 0.00 3.55
172 173 6.719370 TGAACTTGCCTAATATTCCAACACTT 59.281 34.615 0.00 0.00 0.00 3.16
173 174 6.759497 ACTTGCCTAATATTCCAACACTTC 57.241 37.500 0.00 0.00 0.00 3.01
174 175 5.652452 ACTTGCCTAATATTCCAACACTTCC 59.348 40.000 0.00 0.00 0.00 3.46
175 176 5.450818 TGCCTAATATTCCAACACTTCCT 57.549 39.130 0.00 0.00 0.00 3.36
176 177 6.569127 TGCCTAATATTCCAACACTTCCTA 57.431 37.500 0.00 0.00 0.00 2.94
177 178 6.591935 TGCCTAATATTCCAACACTTCCTAG 58.408 40.000 0.00 0.00 0.00 3.02
178 179 5.470437 GCCTAATATTCCAACACTTCCTAGC 59.530 44.000 0.00 0.00 0.00 3.42
179 180 6.689177 GCCTAATATTCCAACACTTCCTAGCT 60.689 42.308 0.00 0.00 0.00 3.32
180 181 7.472945 GCCTAATATTCCAACACTTCCTAGCTA 60.473 40.741 0.00 0.00 0.00 3.32
181 182 8.091449 CCTAATATTCCAACACTTCCTAGCTAG 58.909 40.741 14.20 14.20 0.00 3.42
182 183 3.611766 TTCCAACACTTCCTAGCTAGC 57.388 47.619 15.74 6.62 0.00 3.42
183 184 2.821437 TCCAACACTTCCTAGCTAGCT 58.179 47.619 23.12 23.12 0.00 3.32
184 185 3.977312 TCCAACACTTCCTAGCTAGCTA 58.023 45.455 22.85 22.85 0.00 3.32
185 186 3.954904 TCCAACACTTCCTAGCTAGCTAG 59.045 47.826 35.39 35.39 44.07 3.42
186 187 3.702045 CCAACACTTCCTAGCTAGCTAGT 59.298 47.826 37.50 25.91 43.22 2.57
187 188 4.202070 CCAACACTTCCTAGCTAGCTAGTC 60.202 50.000 37.50 13.74 43.22 2.59
188 189 3.207778 ACACTTCCTAGCTAGCTAGTCG 58.792 50.000 37.50 28.82 43.22 4.18
189 190 3.207778 CACTTCCTAGCTAGCTAGTCGT 58.792 50.000 37.50 29.33 43.22 4.34
190 191 3.002862 CACTTCCTAGCTAGCTAGTCGTG 59.997 52.174 37.50 33.26 43.22 4.35
191 192 3.207778 CTTCCTAGCTAGCTAGTCGTGT 58.792 50.000 37.50 11.85 43.22 4.49
192 193 2.836262 TCCTAGCTAGCTAGTCGTGTC 58.164 52.381 37.50 4.26 43.22 3.67
193 194 1.874872 CCTAGCTAGCTAGTCGTGTCC 59.125 57.143 37.50 3.54 43.22 4.02
194 195 1.874872 CTAGCTAGCTAGTCGTGTCCC 59.125 57.143 34.41 2.82 40.68 4.46
195 196 0.256464 AGCTAGCTAGTCGTGTCCCT 59.744 55.000 17.69 5.13 0.00 4.20
196 197 1.104630 GCTAGCTAGTCGTGTCCCTT 58.895 55.000 21.62 0.00 0.00 3.95
197 198 1.065851 GCTAGCTAGTCGTGTCCCTTC 59.934 57.143 21.62 0.00 0.00 3.46
198 199 2.366533 CTAGCTAGTCGTGTCCCTTCA 58.633 52.381 12.92 0.00 0.00 3.02
199 200 1.629043 AGCTAGTCGTGTCCCTTCAA 58.371 50.000 0.00 0.00 0.00 2.69
200 201 1.968493 AGCTAGTCGTGTCCCTTCAAA 59.032 47.619 0.00 0.00 0.00 2.69
201 202 2.067013 GCTAGTCGTGTCCCTTCAAAC 58.933 52.381 0.00 0.00 0.00 2.93
202 203 2.288886 GCTAGTCGTGTCCCTTCAAACT 60.289 50.000 0.00 0.00 0.00 2.66
203 204 2.528041 AGTCGTGTCCCTTCAAACTC 57.472 50.000 0.00 0.00 0.00 3.01
204 205 2.040178 AGTCGTGTCCCTTCAAACTCT 58.960 47.619 0.00 0.00 0.00 3.24
205 206 3.228453 AGTCGTGTCCCTTCAAACTCTA 58.772 45.455 0.00 0.00 0.00 2.43
206 207 3.833070 AGTCGTGTCCCTTCAAACTCTAT 59.167 43.478 0.00 0.00 0.00 1.98
207 208 5.014858 AGTCGTGTCCCTTCAAACTCTATA 58.985 41.667 0.00 0.00 0.00 1.31
208 209 5.479375 AGTCGTGTCCCTTCAAACTCTATAA 59.521 40.000 0.00 0.00 0.00 0.98
209 210 6.154706 AGTCGTGTCCCTTCAAACTCTATAAT 59.845 38.462 0.00 0.00 0.00 1.28
210 211 6.817140 GTCGTGTCCCTTCAAACTCTATAATT 59.183 38.462 0.00 0.00 0.00 1.40
211 212 6.816640 TCGTGTCCCTTCAAACTCTATAATTG 59.183 38.462 0.00 0.00 0.00 2.32
212 213 6.456988 CGTGTCCCTTCAAACTCTATAATTGC 60.457 42.308 0.00 0.00 0.00 3.56
213 214 6.374333 GTGTCCCTTCAAACTCTATAATTGCA 59.626 38.462 0.00 0.00 0.00 4.08
214 215 7.067494 GTGTCCCTTCAAACTCTATAATTGCAT 59.933 37.037 0.00 0.00 0.00 3.96
215 216 8.271458 TGTCCCTTCAAACTCTATAATTGCATA 58.729 33.333 0.00 0.00 0.00 3.14
216 217 8.560374 GTCCCTTCAAACTCTATAATTGCATAC 58.440 37.037 0.00 0.00 0.00 2.39
217 218 7.441157 TCCCTTCAAACTCTATAATTGCATACG 59.559 37.037 0.00 0.00 0.00 3.06
218 219 7.441157 CCCTTCAAACTCTATAATTGCATACGA 59.559 37.037 0.00 0.00 0.00 3.43
219 220 8.826710 CCTTCAAACTCTATAATTGCATACGAA 58.173 33.333 0.00 0.00 0.00 3.85
220 221 9.638300 CTTCAAACTCTATAATTGCATACGAAC 57.362 33.333 0.00 0.00 0.00 3.95
221 222 8.710835 TCAAACTCTATAATTGCATACGAACA 57.289 30.769 0.00 0.00 0.00 3.18
222 223 8.600625 TCAAACTCTATAATTGCATACGAACAC 58.399 33.333 0.00 0.00 0.00 3.32
223 224 8.387354 CAAACTCTATAATTGCATACGAACACA 58.613 33.333 0.00 0.00 0.00 3.72
224 225 8.487313 AACTCTATAATTGCATACGAACACAA 57.513 30.769 0.00 0.00 0.00 3.33
225 226 8.487313 ACTCTATAATTGCATACGAACACAAA 57.513 30.769 0.00 0.00 0.00 2.83
226 227 8.604035 ACTCTATAATTGCATACGAACACAAAG 58.396 33.333 0.00 0.00 0.00 2.77
227 228 7.406553 TCTATAATTGCATACGAACACAAAGC 58.593 34.615 0.00 0.00 0.00 3.51
228 229 2.308347 TTGCATACGAACACAAAGCG 57.692 45.000 0.00 0.00 0.00 4.68
229 230 0.515127 TGCATACGAACACAAAGCGG 59.485 50.000 0.00 0.00 0.00 5.52
230 231 0.515564 GCATACGAACACAAAGCGGT 59.484 50.000 0.00 0.00 0.00 5.68
231 232 1.724654 GCATACGAACACAAAGCGGTG 60.725 52.381 0.00 4.92 44.35 4.94
232 233 0.515564 ATACGAACACAAAGCGGTGC 59.484 50.000 6.18 0.00 42.55 5.01
233 234 0.810426 TACGAACACAAAGCGGTGCA 60.810 50.000 6.18 0.00 42.55 4.57
234 235 1.063327 CGAACACAAAGCGGTGCAA 59.937 52.632 6.18 0.00 42.55 4.08
235 236 1.199852 CGAACACAAAGCGGTGCAAC 61.200 55.000 0.00 0.00 42.55 4.17
236 237 1.199852 GAACACAAAGCGGTGCAACG 61.200 55.000 22.40 22.40 42.55 4.10
237 238 1.649390 AACACAAAGCGGTGCAACGA 61.649 50.000 31.65 0.00 42.55 3.85
238 239 1.282570 CACAAAGCGGTGCAACGAT 59.717 52.632 31.65 22.14 38.12 3.73
239 240 0.998226 CACAAAGCGGTGCAACGATG 60.998 55.000 31.65 24.10 38.12 3.84
240 241 1.442520 CAAAGCGGTGCAACGATGG 60.443 57.895 31.65 14.75 38.12 3.51
241 242 2.625823 AAAGCGGTGCAACGATGGG 61.626 57.895 31.65 0.00 38.12 4.00
242 243 3.842925 AAGCGGTGCAACGATGGGT 62.843 57.895 31.65 2.93 38.12 4.51
243 244 3.799755 GCGGTGCAACGATGGGTC 61.800 66.667 31.65 4.56 38.12 4.46
324 325 4.314740 AATATCTTCTCGAGGAGCACAC 57.685 45.455 16.52 0.00 0.00 3.82
559 608 2.410939 GAAATCTTATCGGTACCGCCC 58.589 52.381 29.64 6.23 39.59 6.13
638 708 2.640184 CATCCATCCATCCATCCATCG 58.360 52.381 0.00 0.00 0.00 3.84
639 709 0.986527 TCCATCCATCCATCCATCGG 59.013 55.000 0.00 0.00 0.00 4.18
641 711 1.612462 CCATCCATCCATCCATCGGTG 60.612 57.143 0.00 0.00 0.00 4.94
643 713 0.694105 TCCATCCATCCATCGGTGGT 60.694 55.000 15.92 0.00 46.16 4.16
644 714 0.535780 CCATCCATCCATCGGTGGTG 60.536 60.000 15.92 12.12 46.16 4.17
645 715 0.181114 CATCCATCCATCGGTGGTGT 59.819 55.000 15.92 1.62 46.16 4.16
646 716 0.918983 ATCCATCCATCGGTGGTGTT 59.081 50.000 15.92 0.00 46.16 3.32
647 717 0.035534 TCCATCCATCGGTGGTGTTG 60.036 55.000 15.92 10.96 46.16 3.33
648 718 1.031571 CCATCCATCGGTGGTGTTGG 61.032 60.000 15.92 16.02 46.16 3.77
649 719 0.322456 CATCCATCGGTGGTGTTGGT 60.322 55.000 15.92 0.00 46.16 3.67
650 720 0.322456 ATCCATCGGTGGTGTTGGTG 60.322 55.000 15.92 0.00 46.16 4.17
696 802 0.387622 CAAACACATCCAAGCGGCTG 60.388 55.000 1.81 0.00 34.40 4.85
697 803 1.526575 AAACACATCCAAGCGGCTGG 61.527 55.000 1.81 7.71 32.35 4.85
698 804 3.818787 CACATCCAAGCGGCTGGC 61.819 66.667 1.81 0.00 44.05 4.85
782 896 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
830 944 1.072852 GCATCCCATCTCCTCCAGC 59.927 63.158 0.00 0.00 0.00 4.85
831 945 1.370437 CATCCCATCTCCTCCAGCG 59.630 63.158 0.00 0.00 0.00 5.18
832 946 2.515071 ATCCCATCTCCTCCAGCGC 61.515 63.158 0.00 0.00 0.00 5.92
833 947 4.247380 CCCATCTCCTCCAGCGCC 62.247 72.222 2.29 0.00 0.00 6.53
834 948 3.160047 CCATCTCCTCCAGCGCCT 61.160 66.667 2.29 0.00 0.00 5.52
835 949 2.420890 CATCTCCTCCAGCGCCTC 59.579 66.667 2.29 0.00 0.00 4.70
856 970 1.745653 CTCATCCCTTCTTTTTCCGGC 59.254 52.381 0.00 0.00 0.00 6.13
857 971 0.817654 CATCCCTTCTTTTTCCGGCC 59.182 55.000 0.00 0.00 0.00 6.13
858 972 0.324368 ATCCCTTCTTTTTCCGGCCC 60.324 55.000 0.00 0.00 0.00 5.80
859 973 1.982395 CCCTTCTTTTTCCGGCCCC 60.982 63.158 0.00 0.00 0.00 5.80
860 974 1.982395 CCTTCTTTTTCCGGCCCCC 60.982 63.158 0.00 0.00 0.00 5.40
862 976 3.136043 TTCTTTTTCCGGCCCCCGT 62.136 57.895 0.00 0.00 46.80 5.28
897 1015 2.496817 CGGAGGAGGAAGGAAGCG 59.503 66.667 0.00 0.00 0.00 4.68
1252 1380 1.730121 GCATGCAGTTCAACATGGACG 60.730 52.381 14.21 0.00 43.13 4.79
1253 1381 1.135603 CATGCAGTTCAACATGGACGG 60.136 52.381 0.00 0.00 39.98 4.79
1257 1385 3.418913 TTCAACATGGACGGCGCG 61.419 61.111 6.90 0.00 0.00 6.86
1621 1752 5.772169 AGTAAACCCTCCGGTCAGTATATAC 59.228 44.000 0.00 4.60 43.71 1.47
1623 1754 3.494332 ACCCTCCGGTCAGTATATACAC 58.506 50.000 15.18 5.35 38.28 2.90
1633 1768 6.239092 CGGTCAGTATATACACACACCCAATA 60.239 42.308 15.18 0.00 0.00 1.90
1645 1780 8.871629 ACACACACCCAATACTGAATTTTATA 57.128 30.769 0.00 0.00 0.00 0.98
1715 1853 9.276590 TCTGAATTTTATATATGCACTGTCCTG 57.723 33.333 0.00 0.00 0.00 3.86
1728 1867 1.667724 CTGTCCTGCTTAAGGCGATTG 59.332 52.381 4.29 0.00 46.92 2.67
1784 1933 4.441913 CCTGCCAATTGTCAAAAGAAGTGT 60.442 41.667 4.43 0.00 0.00 3.55
1789 1938 7.067615 TGCCAATTGTCAAAAGAAGTGTAGTAA 59.932 33.333 4.43 0.00 0.00 2.24
1804 1953 7.286215 AGTGTAGTAACTTCTGTAGCAAAGA 57.714 36.000 0.00 0.00 0.00 2.52
1811 1960 8.903820 AGTAACTTCTGTAGCAAAGAAATGTTT 58.096 29.630 0.00 0.00 33.40 2.83
1855 2005 8.206867 ACAGAGTATCATTAGCTCAATTTGCTA 58.793 33.333 0.00 5.98 38.76 3.49
1881 2031 4.639310 CAGTTGCTGCCATCTTAGAAATCT 59.361 41.667 0.00 0.00 0.00 2.40
1889 2039 7.062722 GCTGCCATCTTAGAAATCTTTTGTTTC 59.937 37.037 0.00 0.00 36.15 2.78
1890 2040 8.181904 TGCCATCTTAGAAATCTTTTGTTTCT 57.818 30.769 6.40 6.40 45.23 2.52
1893 2043 9.617975 CCATCTTAGAAATCTTTTGTTTCTGTC 57.382 33.333 10.45 0.00 43.62 3.51
1902 2052 4.273480 TCTTTTGTTTCTGTCTGCTGCTAC 59.727 41.667 0.00 0.00 0.00 3.58
1908 2058 5.208503 GTTTCTGTCTGCTGCTACTTTTTC 58.791 41.667 0.00 0.00 0.00 2.29
1916 2066 3.631686 TGCTGCTACTTTTTCTGCAAAGA 59.368 39.130 0.00 0.00 37.24 2.52
1923 2073 8.629158 TGCTACTTTTTCTGCAAAGATTTTCTA 58.371 29.630 2.92 0.00 37.24 2.10
1932 2082 6.205464 TCTGCAAAGATTTTCTAACACTCTGG 59.795 38.462 0.00 0.00 0.00 3.86
1938 2088 8.423906 AAGATTTTCTAACACTCTGGAGTCTA 57.576 34.615 0.00 0.00 40.20 2.59
1944 2094 7.776618 TCTAACACTCTGGAGTCTAATTTGA 57.223 36.000 0.00 0.00 40.20 2.69
1962 2112 1.208052 TGAGCTGGAGACATAGCCAAC 59.792 52.381 0.00 0.00 40.76 3.77
1963 2113 1.208052 GAGCTGGAGACATAGCCAACA 59.792 52.381 0.00 0.00 40.76 3.33
1964 2114 1.630369 AGCTGGAGACATAGCCAACAA 59.370 47.619 0.00 0.00 40.76 2.83
2037 2424 9.880157 ACAATGAAGAAAATTAATTCCTGATGG 57.120 29.630 0.10 0.29 0.00 3.51
2038 2425 9.321562 CAATGAAGAAAATTAATTCCTGATGGG 57.678 33.333 0.10 0.00 0.00 4.00
2039 2426 8.613922 ATGAAGAAAATTAATTCCTGATGGGT 57.386 30.769 0.10 0.00 36.25 4.51
2040 2427 8.434589 TGAAGAAAATTAATTCCTGATGGGTT 57.565 30.769 0.10 0.00 36.25 4.11
2041 2428 8.879227 TGAAGAAAATTAATTCCTGATGGGTTT 58.121 29.630 0.10 0.00 36.25 3.27
2042 2429 9.725019 GAAGAAAATTAATTCCTGATGGGTTTT 57.275 29.630 0.10 0.00 36.25 2.43
2043 2430 9.725019 AAGAAAATTAATTCCTGATGGGTTTTC 57.275 29.630 0.10 0.00 34.80 2.29
2044 2431 8.321353 AGAAAATTAATTCCTGATGGGTTTTCC 58.679 33.333 0.10 0.00 35.02 3.13
2045 2432 7.813087 AAATTAATTCCTGATGGGTTTTCCT 57.187 32.000 0.10 0.00 40.46 3.36
2076 2463 1.412079 TGTTTTGTCCAGGCAATGCT 58.588 45.000 4.82 0.00 0.00 3.79
2140 2527 3.196469 CACAGCATCTCCTTCAGAGGTAA 59.804 47.826 0.00 0.00 43.97 2.85
2147 2534 3.776969 TCTCCTTCAGAGGTAATGCACAT 59.223 43.478 0.00 0.00 43.97 3.21
2168 2556 3.902881 AATGCAAACTGAAACAACCCA 57.097 38.095 0.00 0.00 0.00 4.51
2173 2561 3.681313 GCAAACTGAAACAACCCAACCAT 60.681 43.478 0.00 0.00 0.00 3.55
2216 2607 2.655090 TCCTGTTGCACCTGATGAAA 57.345 45.000 0.00 0.00 0.00 2.69
2240 2631 9.623000 AAATGACAGACAGAATCATATCAATCA 57.377 29.630 0.00 0.00 32.74 2.57
2246 2637 7.498239 CAGACAGAATCATATCAATCACCTTGT 59.502 37.037 0.00 0.00 36.20 3.16
2325 2716 1.528542 CTCTCGGCGATGGGGTCTA 60.529 63.158 11.27 0.00 0.00 2.59
2336 2727 1.237458 GGGGTCTATCTCCAGGGCT 59.763 63.158 0.00 0.00 36.51 5.19
2342 2733 1.292242 TCTATCTCCAGGGCTGTCCTT 59.708 52.381 0.00 0.00 45.47 3.36
2433 2828 7.707624 ATATGCAGGAAACAGATCAAAGAAA 57.292 32.000 0.00 0.00 0.00 2.52
2435 2830 7.707624 ATGCAGGAAACAGATCAAAGAAATA 57.292 32.000 0.00 0.00 0.00 1.40
2461 2856 4.562757 GCACCTGAGACTTGTATGTAACCA 60.563 45.833 0.00 0.00 0.00 3.67
2548 2944 0.962356 ACGAGGGCCAGCAAAATCAG 60.962 55.000 6.18 0.00 0.00 2.90
2563 2959 0.395862 ATCAGACCGACGGGATCAGT 60.396 55.000 20.00 0.00 36.97 3.41
2668 3068 3.820467 CAGCAATTTACCAGACCTCAACA 59.180 43.478 0.00 0.00 0.00 3.33
2690 3090 6.064060 ACAGAAAAGATTCAGACATGGAACA 58.936 36.000 0.00 0.00 39.87 3.18
2977 3381 3.862642 GCCTAGCTCTGGGATATTTGACG 60.863 52.174 3.27 0.00 32.26 4.35
3029 3433 7.835822 TCTTCTAGAGGATAGCTCATATTTGC 58.164 38.462 0.00 0.00 0.00 3.68
3148 3552 1.164411 TTATTCGCCAGGCTGTGTTG 58.836 50.000 14.43 0.00 0.00 3.33
3149 3553 1.305219 TATTCGCCAGGCTGTGTTGC 61.305 55.000 14.43 8.56 0.00 4.17
3150 3554 3.659820 TATTCGCCAGGCTGTGTTGCT 62.660 52.381 14.43 0.00 0.00 3.91
3151 3555 4.034258 CGCCAGGCTGTGTTGCTG 62.034 66.667 14.43 2.83 0.00 4.41
3153 3557 2.492773 GCCAGGCTGTGTTGCTGTT 61.493 57.895 14.43 0.00 0.00 3.16
3154 3558 1.361271 CCAGGCTGTGTTGCTGTTG 59.639 57.895 14.43 0.00 0.00 3.33
3155 3559 1.299620 CAGGCTGTGTTGCTGTTGC 60.300 57.895 6.28 0.00 40.20 4.17
3190 3594 6.830114 TTTTGTTTGTATTTCGGCGAAATT 57.170 29.167 41.55 28.44 41.64 1.82
3195 3599 7.085116 TGTTTGTATTTCGGCGAAATTGTTAT 58.915 30.769 41.55 25.79 41.64 1.89
3200 3604 8.024285 TGTATTTCGGCGAAATTGTTATTTTCT 58.976 29.630 41.55 22.81 41.64 2.52
3237 3641 5.483685 AAACAGAGTAGCATACAACAGGA 57.516 39.130 0.00 0.00 46.26 3.86
3311 3716 6.104665 AGAACAGATGACACATACACATGAG 58.895 40.000 0.00 0.00 35.96 2.90
3312 3717 5.411831 ACAGATGACACATACACATGAGT 57.588 39.130 0.00 0.00 38.49 3.41
3322 3727 4.379174 ACATGAGTGAACACGCCC 57.621 55.556 0.00 0.00 36.20 6.13
3323 3728 1.449782 ACATGAGTGAACACGCCCA 59.550 52.632 0.00 3.89 36.20 5.36
3532 3939 1.351017 TGCCCCTCTTTGTCAACTAGG 59.649 52.381 0.00 5.67 0.00 3.02
3565 3972 2.509052 TCCATTTGATACGCTCTCCG 57.491 50.000 0.00 0.00 44.21 4.63
3618 4025 3.818787 CAGCGGGGCAGCATTGTC 61.819 66.667 6.94 0.00 40.15 3.18
3710 4117 3.372206 GCTAGCACACACACAGAAATAGG 59.628 47.826 10.63 0.00 0.00 2.57
3713 4120 4.067896 AGCACACACACAGAAATAGGAAG 58.932 43.478 0.00 0.00 0.00 3.46
3714 4121 3.189287 GCACACACACAGAAATAGGAAGG 59.811 47.826 0.00 0.00 0.00 3.46
3715 4122 4.389374 CACACACACAGAAATAGGAAGGT 58.611 43.478 0.00 0.00 0.00 3.50
3716 4123 4.821805 CACACACACAGAAATAGGAAGGTT 59.178 41.667 0.00 0.00 0.00 3.50
3717 4124 5.299279 CACACACACAGAAATAGGAAGGTTT 59.701 40.000 0.00 0.00 0.00 3.27
3721 4128 6.486993 ACACACAGAAATAGGAAGGTTTCTTC 59.513 38.462 0.00 0.00 46.47 2.87
3846 4256 1.555967 TTGCAGGGGAAAGCCAATAC 58.444 50.000 0.00 0.00 35.15 1.89
3853 4263 2.558800 GGGGAAAGCCAATACCTCCAAA 60.559 50.000 0.00 0.00 35.15 3.28
3890 4301 8.497554 GCAGAAAACATGCAAAGATAAATGAAA 58.502 29.630 0.00 0.00 43.31 2.69
3923 4336 5.562696 CGAAGTACAATGCAAGTGATTTGGT 60.563 40.000 7.69 0.00 34.17 3.67
3938 4351 1.794151 TTGGTCTGCACAATGGCACG 61.794 55.000 0.00 0.00 39.25 5.34
3942 4355 0.950555 TCTGCACAATGGCACGTCTC 60.951 55.000 0.00 0.00 39.25 3.36
3947 4360 0.885879 ACAATGGCACGTCTCGTCTA 59.114 50.000 0.00 0.00 38.32 2.59
3951 4364 0.240145 TGGCACGTCTCGTCTAACTG 59.760 55.000 0.00 0.00 38.32 3.16
3986 4402 3.008375 TCATACTGAAGACTTGCAGCCTT 59.992 43.478 12.02 0.00 35.57 4.35
3999 4415 5.411669 ACTTGCAGCCTTACATAAACTGTAC 59.588 40.000 0.00 0.00 40.06 2.90
4000 4416 3.930229 TGCAGCCTTACATAAACTGTACG 59.070 43.478 0.00 0.00 40.06 3.67
4004 4420 5.815740 CAGCCTTACATAAACTGTACGGATT 59.184 40.000 9.17 5.47 43.59 3.01
4005 4421 6.018994 CAGCCTTACATAAACTGTACGGATTC 60.019 42.308 9.17 0.00 43.59 2.52
4008 4424 7.695869 CTTACATAAACTGTACGGATTCCTC 57.304 40.000 9.17 0.00 40.06 3.71
4009 4425 5.934402 ACATAAACTGTACGGATTCCTCT 57.066 39.130 9.17 0.00 35.91 3.69
4011 4427 6.708285 ACATAAACTGTACGGATTCCTCTTT 58.292 36.000 9.17 0.00 35.91 2.52
4013 4429 5.485209 AAACTGTACGGATTCCTCTTTCT 57.515 39.130 9.17 0.00 0.00 2.52
4015 4431 5.579564 ACTGTACGGATTCCTCTTTCTAC 57.420 43.478 9.17 0.00 0.00 2.59
4016 4432 4.401837 ACTGTACGGATTCCTCTTTCTACC 59.598 45.833 9.17 0.00 0.00 3.18
4017 4433 4.346730 TGTACGGATTCCTCTTTCTACCA 58.653 43.478 0.30 0.00 0.00 3.25
4018 4434 3.889520 ACGGATTCCTCTTTCTACCAC 57.110 47.619 0.30 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.243981 AGAAACAGACATGAACAGAGGATG 58.756 41.667 0.00 0.00 0.00 3.51
9 10 5.495926 AGAAACAGACATGAACAGAGGAT 57.504 39.130 0.00 0.00 0.00 3.24
10 11 4.963318 AGAAACAGACATGAACAGAGGA 57.037 40.909 0.00 0.00 0.00 3.71
11 12 5.541845 TGTAGAAACAGACATGAACAGAGG 58.458 41.667 0.00 0.00 0.00 3.69
25 26 6.218019 ACACGTAACAATAGCTGTAGAAACA 58.782 36.000 0.00 0.00 37.23 2.83
27 28 7.569297 CAAACACGTAACAATAGCTGTAGAAA 58.431 34.615 0.00 0.00 37.23 2.52
28 29 6.347079 GCAAACACGTAACAATAGCTGTAGAA 60.347 38.462 0.00 0.00 37.23 2.10
29 30 5.119588 GCAAACACGTAACAATAGCTGTAGA 59.880 40.000 0.00 0.00 37.23 2.59
30 31 5.120208 AGCAAACACGTAACAATAGCTGTAG 59.880 40.000 0.00 0.00 37.23 2.74
31 32 4.992319 AGCAAACACGTAACAATAGCTGTA 59.008 37.500 0.00 0.00 37.23 2.74
32 33 3.813166 AGCAAACACGTAACAATAGCTGT 59.187 39.130 0.00 0.00 41.27 4.40
33 34 4.151070 CAGCAAACACGTAACAATAGCTG 58.849 43.478 0.00 0.00 40.57 4.24
34 35 3.364964 GCAGCAAACACGTAACAATAGCT 60.365 43.478 0.00 0.00 0.00 3.32
35 36 2.908626 GCAGCAAACACGTAACAATAGC 59.091 45.455 0.00 0.00 0.00 2.97
36 37 4.151070 CAGCAGCAAACACGTAACAATAG 58.849 43.478 0.00 0.00 0.00 1.73
37 38 3.562141 ACAGCAGCAAACACGTAACAATA 59.438 39.130 0.00 0.00 0.00 1.90
38 39 2.357637 ACAGCAGCAAACACGTAACAAT 59.642 40.909 0.00 0.00 0.00 2.71
39 40 1.740585 ACAGCAGCAAACACGTAACAA 59.259 42.857 0.00 0.00 0.00 2.83
40 41 1.374560 ACAGCAGCAAACACGTAACA 58.625 45.000 0.00 0.00 0.00 2.41
41 42 2.468532 AACAGCAGCAAACACGTAAC 57.531 45.000 0.00 0.00 0.00 2.50
42 43 3.608241 GCATAACAGCAGCAAACACGTAA 60.608 43.478 0.00 0.00 0.00 3.18
43 44 2.095969 GCATAACAGCAGCAAACACGTA 60.096 45.455 0.00 0.00 0.00 3.57
44 45 1.334960 GCATAACAGCAGCAAACACGT 60.335 47.619 0.00 0.00 0.00 4.49
45 46 1.330306 GCATAACAGCAGCAAACACG 58.670 50.000 0.00 0.00 0.00 4.49
46 47 2.420628 TGCATAACAGCAGCAAACAC 57.579 45.000 0.00 0.00 40.11 3.32
64 65 6.369005 CAAACTAGAAGAACAGCAAGACATG 58.631 40.000 0.00 0.00 0.00 3.21
65 66 5.049129 GCAAACTAGAAGAACAGCAAGACAT 60.049 40.000 0.00 0.00 0.00 3.06
66 67 4.273480 GCAAACTAGAAGAACAGCAAGACA 59.727 41.667 0.00 0.00 0.00 3.41
67 68 4.513318 AGCAAACTAGAAGAACAGCAAGAC 59.487 41.667 0.00 0.00 0.00 3.01
68 69 4.708177 AGCAAACTAGAAGAACAGCAAGA 58.292 39.130 0.00 0.00 0.00 3.02
81 82 7.199541 AGCATGCAATAATCTAGCAAACTAG 57.800 36.000 21.98 0.00 46.30 2.57
82 83 7.933577 ACTAGCATGCAATAATCTAGCAAACTA 59.066 33.333 21.98 0.00 42.15 2.24
83 84 6.769822 ACTAGCATGCAATAATCTAGCAAACT 59.230 34.615 21.98 0.00 42.15 2.66
84 85 6.963796 ACTAGCATGCAATAATCTAGCAAAC 58.036 36.000 21.98 0.00 42.15 2.93
85 86 8.853077 ATACTAGCATGCAATAATCTAGCAAA 57.147 30.769 21.98 1.19 42.15 3.68
86 87 8.316946 AGATACTAGCATGCAATAATCTAGCAA 58.683 33.333 21.98 3.56 42.15 3.91
87 88 7.845037 AGATACTAGCATGCAATAATCTAGCA 58.155 34.615 21.98 1.80 43.14 3.49
88 89 8.196771 AGAGATACTAGCATGCAATAATCTAGC 58.803 37.037 21.98 10.95 32.23 3.42
91 92 8.814931 AGAAGAGATACTAGCATGCAATAATCT 58.185 33.333 21.98 20.35 0.00 2.40
94 95 9.083422 ACTAGAAGAGATACTAGCATGCAATAA 57.917 33.333 21.98 2.60 39.47 1.40
95 96 8.642935 ACTAGAAGAGATACTAGCATGCAATA 57.357 34.615 21.98 9.23 39.47 1.90
96 97 7.232330 TGACTAGAAGAGATACTAGCATGCAAT 59.768 37.037 21.98 7.51 39.47 3.56
97 98 6.547510 TGACTAGAAGAGATACTAGCATGCAA 59.452 38.462 21.98 2.20 39.47 4.08
98 99 6.064717 TGACTAGAAGAGATACTAGCATGCA 58.935 40.000 21.98 5.01 39.47 3.96
99 100 6.567687 TGACTAGAAGAGATACTAGCATGC 57.432 41.667 10.51 10.51 39.47 4.06
100 101 8.334263 TCATGACTAGAAGAGATACTAGCATG 57.666 38.462 19.52 19.52 42.96 4.06
101 102 8.932434 TTCATGACTAGAAGAGATACTAGCAT 57.068 34.615 0.00 0.00 39.47 3.79
102 103 8.932434 ATTCATGACTAGAAGAGATACTAGCA 57.068 34.615 0.00 0.00 39.47 3.49
129 130 9.807649 GCAAGTTCATGATTAATTCCAGTAAAT 57.192 29.630 0.00 0.00 0.00 1.40
130 131 8.250332 GGCAAGTTCATGATTAATTCCAGTAAA 58.750 33.333 0.00 0.00 0.00 2.01
131 132 7.615365 AGGCAAGTTCATGATTAATTCCAGTAA 59.385 33.333 0.00 0.00 0.00 2.24
132 133 7.118723 AGGCAAGTTCATGATTAATTCCAGTA 58.881 34.615 0.00 0.00 0.00 2.74
133 134 5.954150 AGGCAAGTTCATGATTAATTCCAGT 59.046 36.000 0.00 0.00 0.00 4.00
134 135 6.461110 AGGCAAGTTCATGATTAATTCCAG 57.539 37.500 0.00 0.00 0.00 3.86
135 136 7.953005 TTAGGCAAGTTCATGATTAATTCCA 57.047 32.000 0.00 0.00 0.00 3.53
140 141 9.639563 TGGAATATTAGGCAAGTTCATGATTAA 57.360 29.630 0.00 0.00 0.00 1.40
141 142 9.639563 TTGGAATATTAGGCAAGTTCATGATTA 57.360 29.630 0.00 0.00 0.00 1.75
142 143 8.416329 GTTGGAATATTAGGCAAGTTCATGATT 58.584 33.333 0.00 0.00 0.00 2.57
143 144 7.560991 TGTTGGAATATTAGGCAAGTTCATGAT 59.439 33.333 0.00 0.00 0.00 2.45
144 145 6.889177 TGTTGGAATATTAGGCAAGTTCATGA 59.111 34.615 0.00 0.00 0.00 3.07
145 146 6.974622 GTGTTGGAATATTAGGCAAGTTCATG 59.025 38.462 0.00 0.00 0.00 3.07
146 147 6.891908 AGTGTTGGAATATTAGGCAAGTTCAT 59.108 34.615 0.00 0.00 0.00 2.57
147 148 6.245408 AGTGTTGGAATATTAGGCAAGTTCA 58.755 36.000 0.00 0.00 0.00 3.18
148 149 6.759497 AGTGTTGGAATATTAGGCAAGTTC 57.241 37.500 0.00 0.00 0.00 3.01
149 150 6.152831 GGAAGTGTTGGAATATTAGGCAAGTT 59.847 38.462 0.00 0.00 0.00 2.66
150 151 5.652452 GGAAGTGTTGGAATATTAGGCAAGT 59.348 40.000 0.00 0.00 0.00 3.16
151 152 5.888161 AGGAAGTGTTGGAATATTAGGCAAG 59.112 40.000 0.00 0.00 0.00 4.01
152 153 5.826643 AGGAAGTGTTGGAATATTAGGCAA 58.173 37.500 0.00 0.00 0.00 4.52
153 154 5.450818 AGGAAGTGTTGGAATATTAGGCA 57.549 39.130 0.00 0.00 0.00 4.75
154 155 5.470437 GCTAGGAAGTGTTGGAATATTAGGC 59.530 44.000 0.00 0.00 0.00 3.93
155 156 6.831976 AGCTAGGAAGTGTTGGAATATTAGG 58.168 40.000 0.00 0.00 0.00 2.69
156 157 7.600752 GCTAGCTAGGAAGTGTTGGAATATTAG 59.399 40.741 22.10 0.00 0.00 1.73
157 158 7.290248 AGCTAGCTAGGAAGTGTTGGAATATTA 59.710 37.037 17.69 0.00 0.00 0.98
158 159 6.100424 AGCTAGCTAGGAAGTGTTGGAATATT 59.900 38.462 17.69 0.00 0.00 1.28
159 160 5.604650 AGCTAGCTAGGAAGTGTTGGAATAT 59.395 40.000 17.69 0.00 0.00 1.28
160 161 4.962995 AGCTAGCTAGGAAGTGTTGGAATA 59.037 41.667 17.69 0.00 0.00 1.75
161 162 3.777522 AGCTAGCTAGGAAGTGTTGGAAT 59.222 43.478 17.69 0.00 0.00 3.01
162 163 3.173965 AGCTAGCTAGGAAGTGTTGGAA 58.826 45.455 17.69 0.00 0.00 3.53
163 164 2.821437 AGCTAGCTAGGAAGTGTTGGA 58.179 47.619 17.69 0.00 0.00 3.53
164 165 4.314740 CTAGCTAGCTAGGAAGTGTTGG 57.685 50.000 34.95 13.47 41.58 3.77
175 176 1.489649 AGGGACACGACTAGCTAGCTA 59.510 52.381 22.85 22.85 0.00 3.32
176 177 0.256464 AGGGACACGACTAGCTAGCT 59.744 55.000 23.12 23.12 0.00 3.32
177 178 1.065851 GAAGGGACACGACTAGCTAGC 59.934 57.143 20.91 6.62 0.00 3.42
178 179 2.366533 TGAAGGGACACGACTAGCTAG 58.633 52.381 19.44 19.44 0.00 3.42
179 180 2.502142 TGAAGGGACACGACTAGCTA 57.498 50.000 0.00 0.00 0.00 3.32
180 181 1.629043 TTGAAGGGACACGACTAGCT 58.371 50.000 0.00 0.00 0.00 3.32
181 182 2.067013 GTTTGAAGGGACACGACTAGC 58.933 52.381 0.00 0.00 0.00 3.42
182 183 3.256136 AGAGTTTGAAGGGACACGACTAG 59.744 47.826 0.00 0.00 0.00 2.57
183 184 3.228453 AGAGTTTGAAGGGACACGACTA 58.772 45.455 0.00 0.00 0.00 2.59
184 185 2.040178 AGAGTTTGAAGGGACACGACT 58.960 47.619 0.00 0.00 0.00 4.18
185 186 2.528041 AGAGTTTGAAGGGACACGAC 57.472 50.000 0.00 0.00 0.00 4.34
186 187 5.988310 TTATAGAGTTTGAAGGGACACGA 57.012 39.130 0.00 0.00 0.00 4.35
187 188 6.456988 GCAATTATAGAGTTTGAAGGGACACG 60.457 42.308 0.00 0.00 0.00 4.49
188 189 6.374333 TGCAATTATAGAGTTTGAAGGGACAC 59.626 38.462 0.00 0.00 0.00 3.67
189 190 6.480763 TGCAATTATAGAGTTTGAAGGGACA 58.519 36.000 0.00 0.00 0.00 4.02
190 191 7.573968 ATGCAATTATAGAGTTTGAAGGGAC 57.426 36.000 0.00 0.00 0.00 4.46
191 192 7.441157 CGTATGCAATTATAGAGTTTGAAGGGA 59.559 37.037 0.00 0.00 0.00 4.20
192 193 7.441157 TCGTATGCAATTATAGAGTTTGAAGGG 59.559 37.037 0.00 0.00 0.00 3.95
193 194 8.365399 TCGTATGCAATTATAGAGTTTGAAGG 57.635 34.615 0.00 0.00 0.00 3.46
194 195 9.638300 GTTCGTATGCAATTATAGAGTTTGAAG 57.362 33.333 0.00 0.00 0.00 3.02
195 196 9.157104 TGTTCGTATGCAATTATAGAGTTTGAA 57.843 29.630 0.00 0.00 0.00 2.69
196 197 8.600625 GTGTTCGTATGCAATTATAGAGTTTGA 58.399 33.333 0.00 0.00 0.00 2.69
197 198 8.387354 TGTGTTCGTATGCAATTATAGAGTTTG 58.613 33.333 0.00 0.00 0.00 2.93
198 199 8.487313 TGTGTTCGTATGCAATTATAGAGTTT 57.513 30.769 0.00 0.00 0.00 2.66
199 200 8.487313 TTGTGTTCGTATGCAATTATAGAGTT 57.513 30.769 0.00 0.00 0.00 3.01
200 201 8.487313 TTTGTGTTCGTATGCAATTATAGAGT 57.513 30.769 0.00 0.00 0.00 3.24
201 202 7.584123 GCTTTGTGTTCGTATGCAATTATAGAG 59.416 37.037 0.00 0.00 0.00 2.43
202 203 7.406553 GCTTTGTGTTCGTATGCAATTATAGA 58.593 34.615 0.00 0.00 0.00 1.98
203 204 6.354362 CGCTTTGTGTTCGTATGCAATTATAG 59.646 38.462 0.00 0.00 0.00 1.31
204 205 6.188871 CGCTTTGTGTTCGTATGCAATTATA 58.811 36.000 0.00 0.00 0.00 0.98
205 206 5.027737 CGCTTTGTGTTCGTATGCAATTAT 58.972 37.500 0.00 0.00 0.00 1.28
206 207 4.399112 CGCTTTGTGTTCGTATGCAATTA 58.601 39.130 0.00 0.00 0.00 1.40
207 208 3.233578 CGCTTTGTGTTCGTATGCAATT 58.766 40.909 0.00 0.00 0.00 2.32
208 209 2.414029 CCGCTTTGTGTTCGTATGCAAT 60.414 45.455 0.00 0.00 0.00 3.56
209 210 1.069568 CCGCTTTGTGTTCGTATGCAA 60.070 47.619 0.00 0.00 0.00 4.08
210 211 0.515127 CCGCTTTGTGTTCGTATGCA 59.485 50.000 0.00 0.00 0.00 3.96
211 212 0.515564 ACCGCTTTGTGTTCGTATGC 59.484 50.000 0.00 0.00 0.00 3.14
212 213 1.724654 GCACCGCTTTGTGTTCGTATG 60.725 52.381 0.00 0.00 38.52 2.39
213 214 0.515564 GCACCGCTTTGTGTTCGTAT 59.484 50.000 0.00 0.00 38.52 3.06
214 215 0.810426 TGCACCGCTTTGTGTTCGTA 60.810 50.000 0.00 0.00 38.52 3.43
215 216 1.649390 TTGCACCGCTTTGTGTTCGT 61.649 50.000 0.00 0.00 38.52 3.85
216 217 1.063327 TTGCACCGCTTTGTGTTCG 59.937 52.632 0.00 0.00 38.52 3.95
217 218 1.199852 CGTTGCACCGCTTTGTGTTC 61.200 55.000 0.00 0.00 38.52 3.18
218 219 1.226547 CGTTGCACCGCTTTGTGTT 60.227 52.632 0.00 0.00 38.52 3.32
219 220 1.444119 ATCGTTGCACCGCTTTGTGT 61.444 50.000 0.00 0.00 38.52 3.72
220 221 0.998226 CATCGTTGCACCGCTTTGTG 60.998 55.000 0.00 0.00 39.29 3.33
221 222 1.282570 CATCGTTGCACCGCTTTGT 59.717 52.632 0.00 0.00 0.00 2.83
222 223 1.442520 CCATCGTTGCACCGCTTTG 60.443 57.895 0.00 0.00 0.00 2.77
223 224 2.625823 CCCATCGTTGCACCGCTTT 61.626 57.895 0.00 0.00 0.00 3.51
224 225 3.055719 CCCATCGTTGCACCGCTT 61.056 61.111 0.00 0.00 0.00 4.68
225 226 4.329545 ACCCATCGTTGCACCGCT 62.330 61.111 0.00 0.00 0.00 5.52
226 227 3.799755 GACCCATCGTTGCACCGC 61.800 66.667 0.00 0.00 0.00 5.68
227 228 3.487202 CGACCCATCGTTGCACCG 61.487 66.667 0.00 0.00 43.66 4.94
236 237 2.663188 GCTCGCCATCGACCCATC 60.663 66.667 0.00 0.00 40.21 3.51
237 238 4.592192 CGCTCGCCATCGACCCAT 62.592 66.667 0.00 0.00 40.21 4.00
559 608 4.129737 AGGCGACACATCCGTCCG 62.130 66.667 0.00 0.00 31.91 4.79
638 708 1.140804 GCACAACACCAACACCACC 59.859 57.895 0.00 0.00 0.00 4.61
639 709 1.140804 GGCACAACACCAACACCAC 59.859 57.895 0.00 0.00 0.00 4.16
641 711 1.398958 ATGGGCACAACACCAACACC 61.399 55.000 0.00 0.00 40.73 4.16
643 713 1.112315 GGATGGGCACAACACCAACA 61.112 55.000 0.00 0.00 40.73 3.33
644 714 0.827507 AGGATGGGCACAACACCAAC 60.828 55.000 11.68 0.00 40.73 3.77
645 715 0.539438 GAGGATGGGCACAACACCAA 60.539 55.000 11.68 0.00 40.73 3.67
646 716 1.074775 GAGGATGGGCACAACACCA 59.925 57.895 11.68 0.00 41.76 4.17
647 717 1.678970 GGAGGATGGGCACAACACC 60.679 63.158 0.00 0.00 0.00 4.16
648 718 0.323725 ATGGAGGATGGGCACAACAC 60.324 55.000 0.00 0.00 0.00 3.32
649 719 0.034186 GATGGAGGATGGGCACAACA 60.034 55.000 0.00 0.00 0.00 3.33
650 720 0.753111 GGATGGAGGATGGGCACAAC 60.753 60.000 0.00 0.00 0.00 3.32
697 803 4.166011 CGCAAGCGGGCAAGTAGC 62.166 66.667 6.55 0.00 44.65 3.58
782 896 1.885233 CGAGCAGCTGGATAGATCAGA 59.115 52.381 17.12 0.00 34.36 3.27
830 944 0.543749 AAAGAAGGGATGAGGAGGCG 59.456 55.000 0.00 0.00 0.00 5.52
831 945 2.816777 AAAAGAAGGGATGAGGAGGC 57.183 50.000 0.00 0.00 0.00 4.70
832 946 3.625853 GGAAAAAGAAGGGATGAGGAGG 58.374 50.000 0.00 0.00 0.00 4.30
833 947 3.274288 CGGAAAAAGAAGGGATGAGGAG 58.726 50.000 0.00 0.00 0.00 3.69
834 948 2.026262 CCGGAAAAAGAAGGGATGAGGA 60.026 50.000 0.00 0.00 0.00 3.71
835 949 2.369394 CCGGAAAAAGAAGGGATGAGG 58.631 52.381 0.00 0.00 0.00 3.86
868 982 4.814294 CCTCCGGCCTGCACGTAC 62.814 72.222 0.00 0.00 0.00 3.67
874 988 4.168291 CTTCCTCCTCCGGCCTGC 62.168 72.222 0.00 0.00 0.00 4.85
876 990 3.254035 TTCCTTCCTCCTCCGGCCT 62.254 63.158 0.00 0.00 0.00 5.19
878 992 2.904131 CTTCCTTCCTCCTCCGGC 59.096 66.667 0.00 0.00 0.00 6.13
879 993 2.904131 GCTTCCTTCCTCCTCCGG 59.096 66.667 0.00 0.00 0.00 5.14
888 1006 3.028366 GCCAAGCGACGCTTCCTTC 62.028 63.158 31.10 16.22 46.77 3.46
889 1007 3.050275 GCCAAGCGACGCTTCCTT 61.050 61.111 31.10 9.22 46.77 3.36
926 1044 1.322637 CTGATCATGCACGAACACGAG 59.677 52.381 0.00 0.00 0.00 4.18
1105 1233 1.077212 AGGGGCTATGCTGTTGCTG 60.077 57.895 0.00 0.00 40.48 4.41
1106 1234 1.225704 GAGGGGCTATGCTGTTGCT 59.774 57.895 0.00 0.00 40.48 3.91
1107 1235 1.825622 GGAGGGGCTATGCTGTTGC 60.826 63.158 0.00 0.00 40.20 4.17
1108 1236 0.179034 GAGGAGGGGCTATGCTGTTG 60.179 60.000 0.00 0.00 0.00 3.33
1109 1237 1.690219 CGAGGAGGGGCTATGCTGTT 61.690 60.000 0.00 0.00 0.00 3.16
1110 1238 2.136878 CGAGGAGGGGCTATGCTGT 61.137 63.158 0.00 0.00 0.00 4.40
1227 1355 2.596923 TTGAACTGCATGCCGGCA 60.597 55.556 34.80 34.80 42.53 5.69
1257 1385 4.162690 ATGGAGGAAGGCGACGGC 62.163 66.667 14.41 14.41 38.90 5.68
1258 1386 2.202932 CATGGAGGAAGGCGACGG 60.203 66.667 0.00 0.00 0.00 4.79
1263 1391 1.941999 GCTGCAACATGGAGGAAGGC 61.942 60.000 0.00 0.00 36.25 4.35
1715 1853 5.429957 AATCTGAATCAATCGCCTTAAGC 57.570 39.130 0.00 0.00 38.52 3.09
1728 1867 9.129532 ACTGGGAATTTGATAGAAATCTGAATC 57.870 33.333 0.00 0.00 32.93 2.52
1784 1933 9.555727 AACATTTCTTTGCTACAGAAGTTACTA 57.444 29.630 0.00 0.00 31.84 1.82
1855 2005 3.754965 TCTAAGATGGCAGCAACTGTTT 58.245 40.909 5.19 0.00 33.43 2.83
1857 2007 3.423539 TTCTAAGATGGCAGCAACTGT 57.576 42.857 5.19 0.00 33.43 3.55
1881 2031 4.199310 AGTAGCAGCAGACAGAAACAAAA 58.801 39.130 0.00 0.00 0.00 2.44
1889 2039 3.364764 GCAGAAAAAGTAGCAGCAGACAG 60.365 47.826 0.00 0.00 0.00 3.51
1890 2040 2.549754 GCAGAAAAAGTAGCAGCAGACA 59.450 45.455 0.00 0.00 0.00 3.41
1893 2043 3.631145 TTGCAGAAAAAGTAGCAGCAG 57.369 42.857 0.00 0.00 38.35 4.24
1902 2052 9.305925 AGTGTTAGAAAATCTTTGCAGAAAAAG 57.694 29.630 0.00 0.00 38.31 2.27
1908 2058 6.205464 TCCAGAGTGTTAGAAAATCTTTGCAG 59.795 38.462 0.00 0.00 0.00 4.41
1923 2073 5.012561 AGCTCAAATTAGACTCCAGAGTGTT 59.987 40.000 4.74 0.00 42.66 3.32
1932 2082 5.078411 TGTCTCCAGCTCAAATTAGACTC 57.922 43.478 0.00 0.00 35.50 3.36
1938 2088 3.054139 TGGCTATGTCTCCAGCTCAAATT 60.054 43.478 0.00 0.00 37.91 1.82
1944 2094 1.279496 TGTTGGCTATGTCTCCAGCT 58.721 50.000 0.00 0.00 37.91 4.24
2040 2427 7.333174 GGACAAAACAACAATTTTCAGAGGAAA 59.667 33.333 0.00 0.00 41.13 3.13
2041 2428 6.816140 GGACAAAACAACAATTTTCAGAGGAA 59.184 34.615 0.00 0.00 29.17 3.36
2042 2429 6.071108 TGGACAAAACAACAATTTTCAGAGGA 60.071 34.615 0.00 0.00 29.17 3.71
2043 2430 6.105333 TGGACAAAACAACAATTTTCAGAGG 58.895 36.000 0.00 0.00 29.17 3.69
2044 2431 6.256321 CCTGGACAAAACAACAATTTTCAGAG 59.744 38.462 0.00 0.00 29.08 3.35
2045 2432 6.105333 CCTGGACAAAACAACAATTTTCAGA 58.895 36.000 0.00 0.00 29.08 3.27
2058 2445 2.531522 AAGCATTGCCTGGACAAAAC 57.468 45.000 4.70 0.00 32.27 2.43
2076 2463 0.850100 TTCCAGCTGAACCAGGGAAA 59.150 50.000 17.39 0.00 32.00 3.13
2147 2534 5.112686 GTTGGGTTGTTTCAGTTTGCATTA 58.887 37.500 0.00 0.00 0.00 1.90
2159 2547 5.131142 TGTTGGAATTATGGTTGGGTTGTTT 59.869 36.000 0.00 0.00 0.00 2.83
2165 2553 6.554605 AGGAATATGTTGGAATTATGGTTGGG 59.445 38.462 0.00 0.00 0.00 4.12
2168 2556 8.061304 ACAGAGGAATATGTTGGAATTATGGTT 58.939 33.333 0.00 0.00 0.00 3.67
2173 2561 9.793259 GGATAACAGAGGAATATGTTGGAATTA 57.207 33.333 1.02 0.00 39.83 1.40
2216 2607 7.660617 GGTGATTGATATGATTCTGTCTGTCAT 59.339 37.037 0.00 0.00 36.60 3.06
2240 2631 2.338984 GCGACGTCCTGACAAGGT 59.661 61.111 10.58 0.00 44.82 3.50
2270 2661 2.510238 GACTGGCTCGCGAATGCT 60.510 61.111 18.29 0.63 39.65 3.79
2351 2742 1.047002 AGGAAGGAGGATGATCTGCG 58.953 55.000 0.00 0.00 0.00 5.18
2418 2813 7.816031 CAGGTGCATTATTTCTTTGATCTGTTT 59.184 33.333 0.00 0.00 0.00 2.83
2433 2828 5.994250 ACATACAAGTCTCAGGTGCATTAT 58.006 37.500 0.00 0.00 0.00 1.28
2435 2830 4.292186 ACATACAAGTCTCAGGTGCATT 57.708 40.909 0.00 0.00 0.00 3.56
2503 2899 5.235186 CAGATTGTAAGAGCCGGATAAACTG 59.765 44.000 5.05 0.00 0.00 3.16
2548 2944 1.139095 GACACTGATCCCGTCGGTC 59.861 63.158 11.06 2.48 44.70 4.79
2590 2986 2.291153 ACCCAGAACACCTCCAATGATG 60.291 50.000 0.00 0.00 0.00 3.07
2653 3049 5.623956 TCTTTTCTGTTGAGGTCTGGTAA 57.376 39.130 0.00 0.00 0.00 2.85
2668 3068 7.587037 TTTGTTCCATGTCTGAATCTTTTCT 57.413 32.000 0.00 0.00 32.78 2.52
2690 3090 6.743575 AAATAAAGTAGATGCACGAGCTTT 57.256 33.333 6.36 11.23 42.74 3.51
2724 3125 9.755804 TTCTATGCTGTATGATACTCTTTTCTG 57.244 33.333 4.03 0.00 0.00 3.02
2726 3127 9.757227 ACTTCTATGCTGTATGATACTCTTTTC 57.243 33.333 4.03 0.00 0.00 2.29
2729 3130 9.757227 GAAACTTCTATGCTGTATGATACTCTT 57.243 33.333 4.03 0.00 0.00 2.85
2887 3291 2.997315 TCCTGAGCTGGGTGACGG 60.997 66.667 0.00 0.00 0.00 4.79
2977 3381 0.237235 TCAATGTTGGAACTTCGCGC 59.763 50.000 0.00 0.00 0.00 6.86
3029 3433 1.064803 CTCGAGAGATGGAAGTGTCGG 59.935 57.143 6.58 0.00 40.84 4.79
3132 3536 3.286751 GCAACACAGCCTGGCGAA 61.287 61.111 13.96 0.00 0.00 4.70
3135 3539 2.492773 AACAGCAACACAGCCTGGC 61.493 57.895 11.65 11.65 34.23 4.85
3175 3579 8.389586 AGAAAATAACAATTTCGCCGAAATAC 57.610 30.769 23.85 8.37 40.77 1.89
3195 3599 8.744652 TCTGTTTTCTACATGGTGAAAAGAAAA 58.255 29.630 20.71 15.71 41.10 2.29
3200 3604 7.041372 GCTACTCTGTTTTCTACATGGTGAAAA 60.041 37.037 18.03 18.03 39.09 2.29
3311 3716 1.308069 ATCATGCTGGGCGTGTTCAC 61.308 55.000 10.83 0.00 44.84 3.18
3312 3717 1.002257 ATCATGCTGGGCGTGTTCA 60.002 52.632 10.83 0.00 44.84 3.18
3313 3718 0.745845 AGATCATGCTGGGCGTGTTC 60.746 55.000 10.83 11.61 44.84 3.18
3314 3719 0.322816 AAGATCATGCTGGGCGTGTT 60.323 50.000 10.83 3.74 44.84 3.32
3315 3720 0.745845 GAAGATCATGCTGGGCGTGT 60.746 55.000 10.83 0.41 44.84 4.49
3317 3722 1.153086 GGAAGATCATGCTGGGCGT 60.153 57.895 0.00 0.00 0.00 5.68
3319 3724 0.822532 CAGGGAAGATCATGCTGGGC 60.823 60.000 0.00 0.00 0.00 5.36
3320 3725 0.178998 CCAGGGAAGATCATGCTGGG 60.179 60.000 5.61 0.00 0.00 4.45
3321 3726 0.841961 TCCAGGGAAGATCATGCTGG 59.158 55.000 6.88 6.88 0.00 4.85
3322 3727 1.767088 TCTCCAGGGAAGATCATGCTG 59.233 52.381 0.00 0.00 0.00 4.41
3323 3728 2.187239 TCTCCAGGGAAGATCATGCT 57.813 50.000 0.00 0.00 0.00 3.79
3565 3972 2.292292 GTCAGAGAGAGGCGGTCTATTC 59.708 54.545 0.00 0.00 34.71 1.75
3618 4025 2.126071 AGGTCGACGTGAATGGCG 60.126 61.111 10.45 0.00 0.00 5.69
3710 4117 3.963383 TCAAGCAACGAAGAAACCTTC 57.037 42.857 0.00 0.00 37.33 3.46
3713 4120 4.142881 GGTCTATCAAGCAACGAAGAAACC 60.143 45.833 0.00 0.00 0.00 3.27
3714 4121 4.691216 AGGTCTATCAAGCAACGAAGAAAC 59.309 41.667 0.00 0.00 0.00 2.78
3715 4122 4.894784 AGGTCTATCAAGCAACGAAGAAA 58.105 39.130 0.00 0.00 0.00 2.52
3716 4123 4.537135 AGGTCTATCAAGCAACGAAGAA 57.463 40.909 0.00 0.00 0.00 2.52
3717 4124 4.245660 CAAGGTCTATCAAGCAACGAAGA 58.754 43.478 0.00 0.00 0.00 2.87
3721 4128 1.061131 CGCAAGGTCTATCAAGCAACG 59.939 52.381 0.00 0.00 0.00 4.10
3722 4129 2.346803 TCGCAAGGTCTATCAAGCAAC 58.653 47.619 0.00 0.00 38.47 4.17
3728 4138 5.984725 TCCTATTTTTCGCAAGGTCTATCA 58.015 37.500 0.00 0.00 38.47 2.15
3838 4248 4.881157 ATTAGGTTTGGAGGTATTGGCT 57.119 40.909 0.00 0.00 0.00 4.75
3846 4256 2.165030 CTGCTGCAATTAGGTTTGGAGG 59.835 50.000 3.02 0.00 43.09 4.30
3853 4263 4.813027 CATGTTTTCTGCTGCAATTAGGT 58.187 39.130 3.02 0.00 0.00 3.08
3890 4301 5.940192 TGCATTGTACTTCGTCTTCAATT 57.060 34.783 0.00 0.00 0.00 2.32
3906 4319 2.991190 GCAGACCAAATCACTTGCATTG 59.009 45.455 0.00 0.00 33.27 2.82
3916 4329 1.273048 TGCCATTGTGCAGACCAAATC 59.727 47.619 0.00 0.00 36.04 2.17
3923 4336 0.950555 GAGACGTGCCATTGTGCAGA 60.951 55.000 0.00 0.00 43.02 4.26
3986 4402 7.414222 AAGAGGAATCCGTACAGTTTATGTA 57.586 36.000 0.00 0.00 43.66 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.