Multiple sequence alignment - TraesCS2D01G597800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G597800 chr2D 100.000 4051 0 0 1 4051 650076842 650080892 0.000000e+00 7481.0
1 TraesCS2D01G597800 chr2D 97.566 452 10 1 3600 4051 124869069 124868619 0.000000e+00 773.0
2 TraesCS2D01G597800 chr2D 80.128 941 169 12 2032 2969 477425627 477424702 0.000000e+00 686.0
3 TraesCS2D01G597800 chr2A 95.537 2644 80 6 980 3601 774816579 774813952 0.000000e+00 4194.0
4 TraesCS2D01G597800 chr2A 95.007 741 30 2 1 734 774831662 774830922 0.000000e+00 1157.0
5 TraesCS2D01G597800 chr2A 77.062 885 138 42 44 897 619809166 619808316 2.220000e-122 449.0
6 TraesCS2D01G597800 chr2A 96.528 144 2 1 715 858 774829076 774828936 6.770000e-58 235.0
7 TraesCS2D01G597800 chr2A 98.333 120 2 0 854 973 774816935 774816816 1.140000e-50 211.0
8 TraesCS2D01G597800 chr2B 96.376 1297 44 3 2021 3315 786104793 786106088 0.000000e+00 2132.0
9 TraesCS2D01G597800 chr2B 94.901 961 43 2 1 955 786102519 786103479 0.000000e+00 1498.0
10 TraesCS2D01G597800 chr2B 86.755 1057 105 7 980 2016 786103711 786104752 0.000000e+00 1144.0
11 TraesCS2D01G597800 chr2B 79.384 941 176 11 2032 2969 559422453 559421528 0.000000e+00 647.0
12 TraesCS2D01G597800 chr2B 94.611 167 9 0 3366 3532 786106090 786106256 4.020000e-65 259.0
13 TraesCS2D01G597800 chr2B 94.656 131 6 1 3472 3601 786106256 786106386 6.870000e-48 202.0
14 TraesCS2D01G597800 chr3B 83.610 1263 168 20 2031 3268 723459797 723461045 0.000000e+00 1149.0
15 TraesCS2D01G597800 chr3B 75.190 919 149 48 2 882 723456632 723457509 1.070000e-95 361.0
16 TraesCS2D01G597800 chr4A 79.343 1249 228 21 2031 3264 18012662 18013895 0.000000e+00 850.0
17 TraesCS2D01G597800 chr4A 88.199 161 11 4 1666 1825 699609013 699608860 6.910000e-43 185.0
18 TraesCS2D01G597800 chr4A 82.063 223 19 5 1682 1904 572560709 572560910 1.940000e-38 171.0
19 TraesCS2D01G597800 chr1D 97.566 452 11 0 3600 4051 260936258 260935807 0.000000e+00 774.0
20 TraesCS2D01G597800 chr1D 97.339 451 11 1 3601 4051 62313810 62313361 0.000000e+00 765.0
21 TraesCS2D01G597800 chr1D 96.923 455 14 0 3597 4051 276716271 276715817 0.000000e+00 763.0
22 TraesCS2D01G597800 chr4D 97.556 450 10 1 3600 4049 434047014 434046566 0.000000e+00 769.0
23 TraesCS2D01G597800 chr5D 97.345 452 11 1 3600 4051 69117373 69116923 0.000000e+00 767.0
24 TraesCS2D01G597800 chr5D 97.339 451 10 2 3601 4051 317163365 317163813 0.000000e+00 765.0
25 TraesCS2D01G597800 chr5D 75.877 228 53 2 2691 2917 421986498 421986272 9.200000e-22 115.0
26 TraesCS2D01G597800 chr7D 96.923 455 12 2 3597 4051 157107831 157108283 0.000000e+00 761.0
27 TraesCS2D01G597800 chr7A 96.882 449 13 1 3603 4051 343780360 343779913 0.000000e+00 750.0
28 TraesCS2D01G597800 chr7A 80.478 251 26 11 1666 1915 696906820 696906592 1.940000e-38 171.0
29 TraesCS2D01G597800 chr1A 81.154 260 21 7 1666 1918 582640333 582640571 2.490000e-42 183.0
30 TraesCS2D01G597800 chr5B 76.522 230 48 6 2691 2917 508675874 508675648 1.980000e-23 121.0
31 TraesCS2D01G597800 chr5A 76.316 228 52 2 2691 2917 535520254 535520028 1.980000e-23 121.0
32 TraesCS2D01G597800 chr5A 85.542 83 12 0 1666 1748 708749268 708749350 2.010000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G597800 chr2D 650076842 650080892 4050 False 7481.0 7481 100.0000 1 4051 1 chr2D.!!$F1 4050
1 TraesCS2D01G597800 chr2D 477424702 477425627 925 True 686.0 686 80.1280 2032 2969 1 chr2D.!!$R2 937
2 TraesCS2D01G597800 chr2A 774813952 774816935 2983 True 2202.5 4194 96.9350 854 3601 2 chr2A.!!$R2 2747
3 TraesCS2D01G597800 chr2A 774828936 774831662 2726 True 696.0 1157 95.7675 1 858 2 chr2A.!!$R3 857
4 TraesCS2D01G597800 chr2A 619808316 619809166 850 True 449.0 449 77.0620 44 897 1 chr2A.!!$R1 853
5 TraesCS2D01G597800 chr2B 786102519 786106386 3867 False 1047.0 2132 93.4598 1 3601 5 chr2B.!!$F1 3600
6 TraesCS2D01G597800 chr2B 559421528 559422453 925 True 647.0 647 79.3840 2032 2969 1 chr2B.!!$R1 937
7 TraesCS2D01G597800 chr3B 723456632 723461045 4413 False 755.0 1149 79.4000 2 3268 2 chr3B.!!$F1 3266
8 TraesCS2D01G597800 chr4A 18012662 18013895 1233 False 850.0 850 79.3430 2031 3264 1 chr4A.!!$F1 1233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 2914 0.391661 CCATCTCCACCACCTCAACG 60.392 60.000 0.0 0.0 0.00 4.10 F
1067 3718 0.598419 GGCTGCTTTGCAACTGAACC 60.598 55.000 0.0 0.0 38.41 3.62 F
2633 6110 2.097038 CCTGCACTCTTCGGCTTCG 61.097 63.158 0.0 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 6110 1.033574 CTCTATGGAGGACCGACACC 58.966 60.0 0.00 0.0 39.42 4.16 R
3048 6535 0.252881 ATGGTTGGCCTCTCCTCTCA 60.253 55.0 3.32 0.0 35.26 3.27 R
4025 7593 0.037734 TCGGAGACACCTGTAGAGCA 59.962 55.0 0.00 0.0 36.31 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.923871 CACAGTAGTATCCAACACAGACAC 59.076 45.833 0.00 0.00 0.00 3.67
89 102 2.553268 GTGCTTGCAGTGCTCGTC 59.447 61.111 17.60 3.63 0.00 4.20
276 313 2.188817 ACCTACCCATCGAGAGCTTTT 58.811 47.619 0.00 0.00 0.00 2.27
566 609 1.000896 GCTGCCCAAGGGTGTATGT 60.001 57.895 7.05 0.00 37.65 2.29
973 2911 1.229625 AGCCATCTCCACCACCTCA 60.230 57.895 0.00 0.00 0.00 3.86
974 2912 0.842030 AGCCATCTCCACCACCTCAA 60.842 55.000 0.00 0.00 0.00 3.02
976 2914 0.391661 CCATCTCCACCACCTCAACG 60.392 60.000 0.00 0.00 0.00 4.10
978 2916 0.898320 ATCTCCACCACCTCAACGAG 59.102 55.000 0.00 0.00 0.00 4.18
1067 3718 0.598419 GGCTGCTTTGCAACTGAACC 60.598 55.000 0.00 0.00 38.41 3.62
1373 4033 2.131972 TGATGACGGAACACTCAAACG 58.868 47.619 0.00 0.00 0.00 3.60
1408 4068 3.550820 TGCAAGTGCTCTTCTGGTTTTA 58.449 40.909 4.69 0.00 42.66 1.52
1743 5154 3.946606 TGTCACATCATCAAGTCATGCT 58.053 40.909 0.00 0.00 0.00 3.79
2009 5433 5.933790 TGAAATAAAGAATCGTTCGGTTGG 58.066 37.500 0.00 0.00 34.02 3.77
2267 5738 6.480981 AGAAGGCAACAAACAATTTTGATCAG 59.519 34.615 4.18 0.00 44.38 2.90
2354 5825 2.562298 GGTGGCCATCAAGAAATCAACA 59.438 45.455 12.38 0.00 0.00 3.33
2553 6030 5.772521 AGCAAAACAGTAGCAACTTATTGG 58.227 37.500 0.00 0.00 36.23 3.16
2633 6110 2.097038 CCTGCACTCTTCGGCTTCG 61.097 63.158 0.00 0.00 0.00 3.79
2843 6321 4.134563 AGAGCGATGTTTACAGTTTTGGT 58.865 39.130 0.00 0.00 0.00 3.67
2861 6339 4.882842 TGGTGTGATACTTGTTGAGCTA 57.117 40.909 0.00 0.00 0.00 3.32
3048 6535 0.972883 GGAGTGCCTCAGACTGACTT 59.027 55.000 0.00 0.00 31.08 3.01
3315 6822 9.838339 TTGCCAGAAAAATAATTTGTTTTCCTA 57.162 25.926 16.64 4.99 42.26 2.94
3473 6980 7.468922 GAAACTAATTTTCATAAGGGCATGC 57.531 36.000 9.90 9.90 42.95 4.06
3601 7169 6.078664 ACTAGTATTCCAAGGGGTCTATCTG 58.921 44.000 0.00 0.00 34.93 2.90
3602 7170 5.157770 AGTATTCCAAGGGGTCTATCTGA 57.842 43.478 0.00 0.00 34.93 3.27
3603 7171 5.538877 AGTATTCCAAGGGGTCTATCTGAA 58.461 41.667 0.00 0.00 34.93 3.02
3604 7172 5.604650 AGTATTCCAAGGGGTCTATCTGAAG 59.395 44.000 0.00 0.00 34.93 3.02
3605 7173 2.764269 TCCAAGGGGTCTATCTGAAGG 58.236 52.381 0.00 0.00 34.93 3.46
3606 7174 2.317900 TCCAAGGGGTCTATCTGAAGGA 59.682 50.000 0.00 0.00 34.93 3.36
3607 7175 3.115390 CCAAGGGGTCTATCTGAAGGAA 58.885 50.000 0.00 0.00 0.00 3.36
3608 7176 3.523564 CCAAGGGGTCTATCTGAAGGAAA 59.476 47.826 0.00 0.00 0.00 3.13
3609 7177 4.166919 CCAAGGGGTCTATCTGAAGGAAAT 59.833 45.833 0.00 0.00 0.00 2.17
3610 7178 5.369699 CCAAGGGGTCTATCTGAAGGAAATA 59.630 44.000 0.00 0.00 0.00 1.40
3611 7179 6.044871 CCAAGGGGTCTATCTGAAGGAAATAT 59.955 42.308 0.00 0.00 0.00 1.28
3612 7180 6.694445 AGGGGTCTATCTGAAGGAAATATG 57.306 41.667 0.00 0.00 0.00 1.78
3613 7181 5.013599 AGGGGTCTATCTGAAGGAAATATGC 59.986 44.000 0.00 0.00 0.00 3.14
3614 7182 5.249420 GGGTCTATCTGAAGGAAATATGCC 58.751 45.833 0.00 0.00 0.00 4.40
3615 7183 5.249420 GGTCTATCTGAAGGAAATATGCCC 58.751 45.833 0.00 0.00 0.00 5.36
3616 7184 5.013599 GGTCTATCTGAAGGAAATATGCCCT 59.986 44.000 0.00 0.00 0.00 5.19
3617 7185 6.213600 GGTCTATCTGAAGGAAATATGCCCTA 59.786 42.308 0.00 0.00 31.36 3.53
3618 7186 7.327214 GTCTATCTGAAGGAAATATGCCCTAG 58.673 42.308 0.00 0.00 31.36 3.02
3619 7187 7.179338 GTCTATCTGAAGGAAATATGCCCTAGA 59.821 40.741 0.00 0.00 31.36 2.43
3620 7188 5.815233 TCTGAAGGAAATATGCCCTAGAG 57.185 43.478 0.00 0.00 31.36 2.43
3621 7189 4.594920 TCTGAAGGAAATATGCCCTAGAGG 59.405 45.833 0.00 0.00 39.47 3.69
3698 7266 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
3699 7267 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
3700 7268 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
3701 7269 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
3702 7270 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
3703 7271 7.107542 TGCTAGAATTGTATTAACCGGAAACT 58.892 34.615 9.46 0.00 0.00 2.66
3704 7272 7.608761 TGCTAGAATTGTATTAACCGGAAACTT 59.391 33.333 9.46 0.00 0.00 2.66
3705 7273 9.101655 GCTAGAATTGTATTAACCGGAAACTTA 57.898 33.333 9.46 0.00 0.00 2.24
3710 7278 9.723601 AATTGTATTAACCGGAAACTTAGTACA 57.276 29.630 9.46 10.88 28.23 2.90
3711 7279 9.895138 ATTGTATTAACCGGAAACTTAGTACAT 57.105 29.630 9.46 2.28 29.53 2.29
3712 7280 8.706492 TGTATTAACCGGAAACTTAGTACATG 57.294 34.615 9.46 0.00 0.00 3.21
3713 7281 8.313292 TGTATTAACCGGAAACTTAGTACATGT 58.687 33.333 9.46 2.69 0.00 3.21
3714 7282 7.605410 ATTAACCGGAAACTTAGTACATGTG 57.395 36.000 9.46 0.00 0.00 3.21
3715 7283 4.612264 ACCGGAAACTTAGTACATGTGT 57.388 40.909 9.46 0.00 0.00 3.72
3716 7284 4.312443 ACCGGAAACTTAGTACATGTGTG 58.688 43.478 9.46 0.00 0.00 3.82
3717 7285 4.039488 ACCGGAAACTTAGTACATGTGTGA 59.961 41.667 9.46 0.00 0.00 3.58
3718 7286 4.992319 CCGGAAACTTAGTACATGTGTGAA 59.008 41.667 9.11 0.00 0.00 3.18
3719 7287 5.642063 CCGGAAACTTAGTACATGTGTGAAT 59.358 40.000 9.11 0.00 0.00 2.57
3720 7288 6.814644 CCGGAAACTTAGTACATGTGTGAATA 59.185 38.462 9.11 0.00 0.00 1.75
3721 7289 7.201496 CCGGAAACTTAGTACATGTGTGAATAC 60.201 40.741 9.11 0.00 0.00 1.89
3722 7290 7.329962 CGGAAACTTAGTACATGTGTGAATACA 59.670 37.037 9.11 0.00 34.63 2.29
3723 7291 9.162764 GGAAACTTAGTACATGTGTGAATACAT 57.837 33.333 9.11 0.00 41.77 2.29
3731 7299 9.719355 AGTACATGTGTGAATACATAGACAAAA 57.281 29.630 9.11 0.00 39.17 2.44
3732 7300 9.755064 GTACATGTGTGAATACATAGACAAAAC 57.245 33.333 9.11 0.00 39.17 2.43
3733 7301 8.389779 ACATGTGTGAATACATAGACAAAACA 57.610 30.769 0.00 0.00 39.17 2.83
3734 7302 8.506437 ACATGTGTGAATACATAGACAAAACAG 58.494 33.333 0.00 0.00 39.17 3.16
3735 7303 8.720562 CATGTGTGAATACATAGACAAAACAGA 58.279 33.333 0.00 0.00 39.17 3.41
3736 7304 8.310406 TGTGTGAATACATAGACAAAACAGAG 57.690 34.615 0.00 0.00 39.39 3.35
3737 7305 7.931407 TGTGTGAATACATAGACAAAACAGAGT 59.069 33.333 0.00 0.00 39.39 3.24
3738 7306 8.223769 GTGTGAATACATAGACAAAACAGAGTG 58.776 37.037 0.00 0.00 39.39 3.51
3739 7307 7.931407 TGTGAATACATAGACAAAACAGAGTGT 59.069 33.333 0.00 0.00 0.00 3.55
3740 7308 8.436200 GTGAATACATAGACAAAACAGAGTGTC 58.564 37.037 0.00 0.00 43.70 3.67
3741 7309 7.602644 TGAATACATAGACAAAACAGAGTGTCC 59.397 37.037 0.36 0.00 44.30 4.02
3742 7310 4.642429 ACATAGACAAAACAGAGTGTCCC 58.358 43.478 0.36 0.00 44.30 4.46
3743 7311 4.348168 ACATAGACAAAACAGAGTGTCCCT 59.652 41.667 0.36 0.00 44.30 4.20
3744 7312 5.542635 ACATAGACAAAACAGAGTGTCCCTA 59.457 40.000 0.36 0.00 44.30 3.53
3745 7313 4.608948 AGACAAAACAGAGTGTCCCTAG 57.391 45.455 0.36 0.00 44.30 3.02
3746 7314 3.967987 AGACAAAACAGAGTGTCCCTAGT 59.032 43.478 0.36 0.00 44.30 2.57
3747 7315 5.145564 AGACAAAACAGAGTGTCCCTAGTA 58.854 41.667 0.36 0.00 44.30 1.82
3748 7316 5.780793 AGACAAAACAGAGTGTCCCTAGTAT 59.219 40.000 0.36 0.00 44.30 2.12
3749 7317 5.794894 ACAAAACAGAGTGTCCCTAGTATG 58.205 41.667 0.00 0.00 0.00 2.39
3750 7318 4.473477 AAACAGAGTGTCCCTAGTATGC 57.527 45.455 0.00 0.00 0.00 3.14
3751 7319 2.389715 ACAGAGTGTCCCTAGTATGCC 58.610 52.381 0.00 0.00 0.00 4.40
3752 7320 2.023888 ACAGAGTGTCCCTAGTATGCCT 60.024 50.000 0.00 0.00 0.00 4.75
3753 7321 2.625790 CAGAGTGTCCCTAGTATGCCTC 59.374 54.545 0.00 0.00 0.00 4.70
3754 7322 2.516277 AGAGTGTCCCTAGTATGCCTCT 59.484 50.000 0.00 0.00 0.00 3.69
3755 7323 3.722627 AGAGTGTCCCTAGTATGCCTCTA 59.277 47.826 0.00 0.00 0.00 2.43
3756 7324 3.822167 GAGTGTCCCTAGTATGCCTCTAC 59.178 52.174 0.00 0.00 0.00 2.59
3757 7325 3.464080 AGTGTCCCTAGTATGCCTCTACT 59.536 47.826 0.00 0.00 36.04 2.57
3758 7326 4.079096 AGTGTCCCTAGTATGCCTCTACTT 60.079 45.833 0.00 0.00 33.96 2.24
3759 7327 4.038162 GTGTCCCTAGTATGCCTCTACTTG 59.962 50.000 0.00 0.00 33.96 3.16
3760 7328 4.079385 TGTCCCTAGTATGCCTCTACTTGA 60.079 45.833 0.00 0.00 33.96 3.02
3761 7329 4.278919 GTCCCTAGTATGCCTCTACTTGAC 59.721 50.000 0.00 0.00 33.96 3.18
3762 7330 4.168283 TCCCTAGTATGCCTCTACTTGACT 59.832 45.833 0.00 0.00 33.96 3.41
3763 7331 5.371769 TCCCTAGTATGCCTCTACTTGACTA 59.628 44.000 0.00 0.00 33.96 2.59
3764 7332 5.708230 CCCTAGTATGCCTCTACTTGACTAG 59.292 48.000 0.00 0.00 36.32 2.57
3765 7333 5.182380 CCTAGTATGCCTCTACTTGACTAGC 59.818 48.000 0.00 0.00 35.60 3.42
3766 7334 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
3767 7335 5.205056 AGTATGCCTCTACTTGACTAGCTT 58.795 41.667 0.00 0.00 0.00 3.74
3768 7336 3.876274 TGCCTCTACTTGACTAGCTTG 57.124 47.619 0.00 0.00 0.00 4.01
3769 7337 3.165875 TGCCTCTACTTGACTAGCTTGT 58.834 45.455 0.00 0.00 0.00 3.16
3770 7338 3.578716 TGCCTCTACTTGACTAGCTTGTT 59.421 43.478 1.43 0.00 0.00 2.83
3771 7339 4.770531 TGCCTCTACTTGACTAGCTTGTTA 59.229 41.667 1.43 0.00 0.00 2.41
3772 7340 5.245301 TGCCTCTACTTGACTAGCTTGTTAA 59.755 40.000 1.43 3.75 0.00 2.01
3773 7341 6.070767 TGCCTCTACTTGACTAGCTTGTTAAT 60.071 38.462 6.01 1.00 0.00 1.40
3774 7342 6.477360 GCCTCTACTTGACTAGCTTGTTAATC 59.523 42.308 6.01 0.00 0.00 1.75
3775 7343 7.548097 CCTCTACTTGACTAGCTTGTTAATCA 58.452 38.462 6.01 0.00 0.00 2.57
3776 7344 8.035394 CCTCTACTTGACTAGCTTGTTAATCAA 58.965 37.037 6.01 3.53 34.61 2.57
3777 7345 9.424319 CTCTACTTGACTAGCTTGTTAATCAAA 57.576 33.333 6.01 0.00 35.48 2.69
3778 7346 9.424319 TCTACTTGACTAGCTTGTTAATCAAAG 57.576 33.333 6.01 5.13 35.48 2.77
3779 7347 9.424319 CTACTTGACTAGCTTGTTAATCAAAGA 57.576 33.333 6.01 0.00 35.48 2.52
3780 7348 8.854614 ACTTGACTAGCTTGTTAATCAAAGAT 57.145 30.769 6.01 0.00 35.48 2.40
3781 7349 8.725148 ACTTGACTAGCTTGTTAATCAAAGATG 58.275 33.333 6.01 0.00 35.48 2.90
3782 7350 7.615582 TGACTAGCTTGTTAATCAAAGATGG 57.384 36.000 1.43 0.00 35.48 3.51
3783 7351 7.168219 TGACTAGCTTGTTAATCAAAGATGGT 58.832 34.615 1.43 3.58 35.48 3.55
3784 7352 7.665559 TGACTAGCTTGTTAATCAAAGATGGTT 59.334 33.333 1.43 0.00 35.48 3.67
3785 7353 9.162764 GACTAGCTTGTTAATCAAAGATGGTTA 57.837 33.333 1.43 0.00 35.48 2.85
3786 7354 9.515226 ACTAGCTTGTTAATCAAAGATGGTTAA 57.485 29.630 0.00 0.00 39.28 2.01
3787 7355 9.994432 CTAGCTTGTTAATCAAAGATGGTTAAG 57.006 33.333 0.00 0.00 41.55 1.85
3788 7356 8.409358 AGCTTGTTAATCAAAGATGGTTAAGT 57.591 30.769 0.00 0.00 41.55 2.24
3789 7357 8.860088 AGCTTGTTAATCAAAGATGGTTAAGTT 58.140 29.630 0.00 0.00 41.55 2.66
3790 7358 9.476202 GCTTGTTAATCAAAGATGGTTAAGTTT 57.524 29.630 0.00 0.00 41.55 2.66
3792 7360 9.974980 TTGTTAATCAAAGATGGTTAAGTTTCC 57.025 29.630 0.00 0.00 41.55 3.13
3793 7361 9.362151 TGTTAATCAAAGATGGTTAAGTTTCCT 57.638 29.630 0.00 0.00 41.55 3.36
3794 7362 9.626045 GTTAATCAAAGATGGTTAAGTTTCCTG 57.374 33.333 0.00 0.00 41.55 3.86
3795 7363 9.581289 TTAATCAAAGATGGTTAAGTTTCCTGA 57.419 29.630 0.00 0.00 37.24 3.86
3796 7364 6.877611 TCAAAGATGGTTAAGTTTCCTGAC 57.122 37.500 0.00 0.00 0.00 3.51
3797 7365 5.768164 TCAAAGATGGTTAAGTTTCCTGACC 59.232 40.000 0.00 0.00 0.00 4.02
3798 7366 4.993705 AGATGGTTAAGTTTCCTGACCA 57.006 40.909 0.00 0.00 40.18 4.02
3799 7367 5.520748 AGATGGTTAAGTTTCCTGACCAT 57.479 39.130 6.05 6.05 44.70 3.55
3800 7368 6.636454 AGATGGTTAAGTTTCCTGACCATA 57.364 37.500 6.32 0.00 43.30 2.74
3801 7369 6.653989 AGATGGTTAAGTTTCCTGACCATAG 58.346 40.000 6.32 0.00 43.30 2.23
3802 7370 6.443849 AGATGGTTAAGTTTCCTGACCATAGA 59.556 38.462 6.32 0.00 43.30 1.98
3803 7371 5.801380 TGGTTAAGTTTCCTGACCATAGAC 58.199 41.667 0.00 0.00 34.52 2.59
3804 7372 5.308497 TGGTTAAGTTTCCTGACCATAGACA 59.692 40.000 0.00 0.00 34.52 3.41
3805 7373 6.012858 TGGTTAAGTTTCCTGACCATAGACAT 60.013 38.462 0.00 0.00 34.52 3.06
3806 7374 6.316390 GGTTAAGTTTCCTGACCATAGACATG 59.684 42.308 0.00 0.00 31.32 3.21
3807 7375 5.505181 AAGTTTCCTGACCATAGACATGT 57.495 39.130 0.00 0.00 0.00 3.21
3808 7376 4.836825 AGTTTCCTGACCATAGACATGTG 58.163 43.478 1.15 0.00 0.00 3.21
3809 7377 4.287067 AGTTTCCTGACCATAGACATGTGT 59.713 41.667 1.15 0.22 0.00 3.72
3810 7378 4.908601 TTCCTGACCATAGACATGTGTT 57.091 40.909 1.15 0.00 0.00 3.32
3811 7379 4.206477 TCCTGACCATAGACATGTGTTG 57.794 45.455 1.15 0.54 0.00 3.33
3812 7380 3.582647 TCCTGACCATAGACATGTGTTGT 59.417 43.478 1.15 0.00 42.79 3.32
3825 7393 6.146601 ACATGTGTTGTCATTTGATGAACA 57.853 33.333 0.00 4.77 41.69 3.18
3826 7394 6.751157 ACATGTGTTGTCATTTGATGAACAT 58.249 32.000 0.00 0.00 41.69 2.71
3827 7395 7.044589 CATGTGTTGTCATTTGATGAACATG 57.955 36.000 14.20 14.20 42.99 3.21
3828 7396 6.388435 TGTGTTGTCATTTGATGAACATGA 57.612 33.333 0.00 0.00 41.69 3.07
3829 7397 6.983984 TGTGTTGTCATTTGATGAACATGAT 58.016 32.000 0.00 0.00 41.69 2.45
3830 7398 7.085746 TGTGTTGTCATTTGATGAACATGATC 58.914 34.615 0.00 0.00 41.69 2.92
3831 7399 6.249893 GTGTTGTCATTTGATGAACATGATCG 59.750 38.462 0.00 0.00 41.69 3.69
3832 7400 4.912214 TGTCATTTGATGAACATGATCGC 58.088 39.130 0.00 0.00 41.69 4.58
3833 7401 4.395542 TGTCATTTGATGAACATGATCGCA 59.604 37.500 0.00 0.00 41.69 5.10
3834 7402 5.066764 TGTCATTTGATGAACATGATCGCAT 59.933 36.000 0.00 0.00 41.69 4.73
3835 7403 5.624081 GTCATTTGATGAACATGATCGCATC 59.376 40.000 0.00 7.24 41.69 3.91
3836 7404 5.297278 TCATTTGATGAACATGATCGCATCA 59.703 36.000 15.25 15.25 43.67 3.07
3837 7405 6.016610 TCATTTGATGAACATGATCGCATCAT 60.017 34.615 17.94 8.53 44.43 2.45
3838 7406 7.469456 TCATTTGATGAACATGATCGCATCATT 60.469 33.333 17.94 10.69 44.43 2.57
3848 7416 5.473066 TGATCGCATCATTAGGAGAATGA 57.527 39.130 2.66 2.66 40.50 2.57
3849 7417 6.046290 TGATCGCATCATTAGGAGAATGAT 57.954 37.500 6.90 6.90 45.40 2.45
3857 7425 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
3858 7426 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
3859 7427 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
3860 7428 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
3861 7429 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
3862 7430 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
3863 7431 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
3864 7432 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
3865 7433 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
3866 7434 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
3867 7435 2.577563 TGATGTGATGGACAAGACCCAT 59.422 45.455 0.00 0.00 46.40 4.00
3871 7439 2.696864 ATGGACAAGACCCATCCGT 58.303 52.632 0.00 0.00 40.16 4.69
3872 7440 0.991920 ATGGACAAGACCCATCCGTT 59.008 50.000 0.00 0.00 40.16 4.44
3873 7441 1.646912 TGGACAAGACCCATCCGTTA 58.353 50.000 0.00 0.00 35.06 3.18
3874 7442 1.553248 TGGACAAGACCCATCCGTTAG 59.447 52.381 0.00 0.00 35.06 2.34
3875 7443 1.653151 GACAAGACCCATCCGTTAGC 58.347 55.000 0.00 0.00 0.00 3.09
3876 7444 1.207329 GACAAGACCCATCCGTTAGCT 59.793 52.381 0.00 0.00 0.00 3.32
3877 7445 1.628846 ACAAGACCCATCCGTTAGCTT 59.371 47.619 0.00 0.00 0.00 3.74
3878 7446 2.835764 ACAAGACCCATCCGTTAGCTTA 59.164 45.455 0.00 0.00 0.00 3.09
3879 7447 3.118738 ACAAGACCCATCCGTTAGCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
3880 7448 1.413077 AGACCCATCCGTTAGCTTAGC 59.587 52.381 0.00 0.00 0.00 3.09
3881 7449 1.138266 GACCCATCCGTTAGCTTAGCA 59.862 52.381 7.07 0.00 0.00 3.49
3882 7450 1.768870 ACCCATCCGTTAGCTTAGCAT 59.231 47.619 7.07 0.00 0.00 3.79
3883 7451 2.969950 ACCCATCCGTTAGCTTAGCATA 59.030 45.455 7.07 0.00 0.00 3.14
3884 7452 3.389983 ACCCATCCGTTAGCTTAGCATAA 59.610 43.478 7.07 0.00 0.00 1.90
3885 7453 4.041691 ACCCATCCGTTAGCTTAGCATAAT 59.958 41.667 7.07 0.00 0.00 1.28
3886 7454 4.393062 CCCATCCGTTAGCTTAGCATAATG 59.607 45.833 7.07 7.64 0.00 1.90
3887 7455 5.237815 CCATCCGTTAGCTTAGCATAATGA 58.762 41.667 7.07 0.00 0.00 2.57
3888 7456 5.877012 CCATCCGTTAGCTTAGCATAATGAT 59.123 40.000 7.07 0.00 0.00 2.45
3889 7457 6.036517 CCATCCGTTAGCTTAGCATAATGATC 59.963 42.308 7.07 0.00 0.00 2.92
3890 7458 5.161358 TCCGTTAGCTTAGCATAATGATCG 58.839 41.667 7.07 2.92 0.00 3.69
3891 7459 4.923871 CCGTTAGCTTAGCATAATGATCGT 59.076 41.667 7.07 0.00 0.00 3.73
3892 7460 5.405571 CCGTTAGCTTAGCATAATGATCGTT 59.594 40.000 7.07 5.33 0.00 3.85
3893 7461 6.584942 CCGTTAGCTTAGCATAATGATCGTTA 59.415 38.462 9.78 9.78 0.00 3.18
3894 7462 7.115805 CCGTTAGCTTAGCATAATGATCGTTAA 59.884 37.037 11.33 0.00 0.00 2.01
3895 7463 8.156553 CGTTAGCTTAGCATAATGATCGTTAAG 58.843 37.037 11.33 8.35 0.00 1.85
3896 7464 8.979574 GTTAGCTTAGCATAATGATCGTTAAGT 58.020 33.333 11.33 2.50 0.00 2.24
3897 7465 9.542462 TTAGCTTAGCATAATGATCGTTAAGTT 57.458 29.630 11.33 7.82 0.00 2.66
3898 7466 8.438676 AGCTTAGCATAATGATCGTTAAGTTT 57.561 30.769 11.33 3.63 0.00 2.66
3899 7467 8.893727 AGCTTAGCATAATGATCGTTAAGTTTT 58.106 29.630 11.33 1.52 0.00 2.43
3904 7472 9.450807 AGCATAATGATCGTTAAGTTTTATTGC 57.549 29.630 11.33 12.83 0.00 3.56
3905 7473 9.450807 GCATAATGATCGTTAAGTTTTATTGCT 57.549 29.630 11.33 0.00 0.00 3.91
3910 7478 8.835467 TGATCGTTAAGTTTTATTGCTATTGC 57.165 30.769 0.00 0.00 40.20 3.56
3911 7479 8.673711 TGATCGTTAAGTTTTATTGCTATTGCT 58.326 29.630 0.00 0.00 40.48 3.91
3912 7480 9.503427 GATCGTTAAGTTTTATTGCTATTGCTT 57.497 29.630 0.00 0.00 40.48 3.91
3913 7481 9.855021 ATCGTTAAGTTTTATTGCTATTGCTTT 57.145 25.926 0.00 0.00 40.48 3.51
3914 7482 9.337091 TCGTTAAGTTTTATTGCTATTGCTTTC 57.663 29.630 0.00 0.00 40.48 2.62
3915 7483 9.341899 CGTTAAGTTTTATTGCTATTGCTTTCT 57.658 29.630 0.00 0.00 40.48 2.52
3919 7487 9.933723 AAGTTTTATTGCTATTGCTTTCTTCAT 57.066 25.926 0.00 0.00 40.48 2.57
3920 7488 9.362539 AGTTTTATTGCTATTGCTTTCTTCATG 57.637 29.630 0.00 0.00 40.48 3.07
3921 7489 9.357652 GTTTTATTGCTATTGCTTTCTTCATGA 57.642 29.630 0.00 0.00 40.48 3.07
3922 7490 8.915871 TTTATTGCTATTGCTTTCTTCATGAC 57.084 30.769 0.00 0.00 40.48 3.06
3923 7491 6.770746 ATTGCTATTGCTTTCTTCATGACT 57.229 33.333 0.00 0.00 40.48 3.41
3924 7492 6.579666 TTGCTATTGCTTTCTTCATGACTT 57.420 33.333 0.00 0.00 40.48 3.01
3925 7493 7.686438 TTGCTATTGCTTTCTTCATGACTTA 57.314 32.000 0.00 0.00 40.48 2.24
3926 7494 7.076842 TGCTATTGCTTTCTTCATGACTTAC 57.923 36.000 0.00 0.00 40.48 2.34
3927 7495 6.654582 TGCTATTGCTTTCTTCATGACTTACA 59.345 34.615 0.00 0.00 40.48 2.41
3928 7496 6.963805 GCTATTGCTTTCTTCATGACTTACAC 59.036 38.462 0.00 0.00 36.03 2.90
3929 7497 6.882610 ATTGCTTTCTTCATGACTTACACA 57.117 33.333 0.00 0.00 0.00 3.72
3930 7498 6.882610 TTGCTTTCTTCATGACTTACACAT 57.117 33.333 0.00 0.00 0.00 3.21
3931 7499 7.977789 TTGCTTTCTTCATGACTTACACATA 57.022 32.000 0.00 0.00 0.00 2.29
3932 7500 8.565896 TTGCTTTCTTCATGACTTACACATAT 57.434 30.769 0.00 0.00 0.00 1.78
3933 7501 8.565896 TGCTTTCTTCATGACTTACACATATT 57.434 30.769 0.00 0.00 0.00 1.28
3934 7502 8.668353 TGCTTTCTTCATGACTTACACATATTC 58.332 33.333 0.00 0.00 0.00 1.75
3935 7503 8.125448 GCTTTCTTCATGACTTACACATATTCC 58.875 37.037 0.00 0.00 0.00 3.01
3936 7504 9.388506 CTTTCTTCATGACTTACACATATTCCT 57.611 33.333 0.00 0.00 0.00 3.36
3937 7505 8.948631 TTCTTCATGACTTACACATATTCCTC 57.051 34.615 0.00 0.00 0.00 3.71
3938 7506 8.311395 TCTTCATGACTTACACATATTCCTCT 57.689 34.615 0.00 0.00 0.00 3.69
3939 7507 8.200120 TCTTCATGACTTACACATATTCCTCTG 58.800 37.037 0.00 0.00 0.00 3.35
3940 7508 7.660030 TCATGACTTACACATATTCCTCTGA 57.340 36.000 0.00 0.00 0.00 3.27
3941 7509 7.492524 TCATGACTTACACATATTCCTCTGAC 58.507 38.462 0.00 0.00 0.00 3.51
3942 7510 7.343057 TCATGACTTACACATATTCCTCTGACT 59.657 37.037 0.00 0.00 0.00 3.41
3943 7511 8.633561 CATGACTTACACATATTCCTCTGACTA 58.366 37.037 0.00 0.00 0.00 2.59
3944 7512 8.768501 TGACTTACACATATTCCTCTGACTAT 57.231 34.615 0.00 0.00 0.00 2.12
3945 7513 8.633561 TGACTTACACATATTCCTCTGACTATG 58.366 37.037 0.00 0.00 39.06 2.23
3946 7514 8.768501 ACTTACACATATTCCTCTGACTATGA 57.231 34.615 6.85 0.00 36.65 2.15
3947 7515 8.855110 ACTTACACATATTCCTCTGACTATGAG 58.145 37.037 6.85 2.73 36.65 2.90
3948 7516 8.996651 TTACACATATTCCTCTGACTATGAGA 57.003 34.615 6.85 0.00 36.65 3.27
3949 7517 9.593565 TTACACATATTCCTCTGACTATGAGAT 57.406 33.333 6.85 0.00 36.65 2.75
3950 7518 8.489676 ACACATATTCCTCTGACTATGAGATT 57.510 34.615 6.85 0.00 36.65 2.40
3951 7519 9.593565 ACACATATTCCTCTGACTATGAGATTA 57.406 33.333 6.85 0.00 36.65 1.75
3957 7525 9.995003 ATTCCTCTGACTATGAGATTATGAAAC 57.005 33.333 0.00 0.00 33.68 2.78
3958 7526 8.774546 TCCTCTGACTATGAGATTATGAAACT 57.225 34.615 0.00 0.00 33.68 2.66
3959 7527 8.855110 TCCTCTGACTATGAGATTATGAAACTC 58.145 37.037 0.00 0.00 33.68 3.01
3960 7528 8.087750 CCTCTGACTATGAGATTATGAAACTCC 58.912 40.741 0.00 0.00 33.68 3.85
3961 7529 7.957002 TCTGACTATGAGATTATGAAACTCCC 58.043 38.462 0.00 0.00 0.00 4.30
3962 7530 6.749139 TGACTATGAGATTATGAAACTCCCG 58.251 40.000 0.00 0.00 0.00 5.14
3963 7531 6.549736 TGACTATGAGATTATGAAACTCCCGA 59.450 38.462 0.00 0.00 0.00 5.14
3964 7532 7.069455 TGACTATGAGATTATGAAACTCCCGAA 59.931 37.037 0.00 0.00 0.00 4.30
3965 7533 7.967908 ACTATGAGATTATGAAACTCCCGAAT 58.032 34.615 0.00 0.00 0.00 3.34
3966 7534 9.090103 ACTATGAGATTATGAAACTCCCGAATA 57.910 33.333 0.00 0.00 0.00 1.75
3967 7535 9.360093 CTATGAGATTATGAAACTCCCGAATAC 57.640 37.037 0.00 0.00 0.00 1.89
3968 7536 6.522054 TGAGATTATGAAACTCCCGAATACC 58.478 40.000 0.00 0.00 0.00 2.73
3969 7537 5.539048 AGATTATGAAACTCCCGAATACCG 58.461 41.667 0.00 0.00 38.18 4.02
3978 7546 4.526770 CGAATACCGGGGGAACAC 57.473 61.111 6.32 0.00 33.91 3.32
3979 7547 1.153309 CGAATACCGGGGGAACACC 60.153 63.158 6.32 0.00 39.11 4.16
3980 7548 1.619807 CGAATACCGGGGGAACACCT 61.620 60.000 6.32 0.00 40.03 4.00
3981 7549 0.622136 GAATACCGGGGGAACACCTT 59.378 55.000 6.32 0.00 40.03 3.50
3982 7550 0.330267 AATACCGGGGGAACACCTTG 59.670 55.000 6.32 0.00 40.03 3.61
3983 7551 0.843343 ATACCGGGGGAACACCTTGT 60.843 55.000 6.32 0.00 40.03 3.16
3984 7552 1.770749 TACCGGGGGAACACCTTGTG 61.771 60.000 6.32 0.00 40.03 3.33
3986 7554 1.896660 CGGGGGAACACCTTGTGTG 60.897 63.158 0.00 0.00 46.79 3.82
3987 7555 2.200337 GGGGGAACACCTTGTGTGC 61.200 63.158 0.00 0.00 46.79 4.57
3988 7556 1.152756 GGGGAACACCTTGTGTGCT 60.153 57.895 5.38 0.00 46.79 4.40
3989 7557 0.109723 GGGGAACACCTTGTGTGCTA 59.890 55.000 5.38 0.00 46.79 3.49
3990 7558 1.271926 GGGGAACACCTTGTGTGCTAT 60.272 52.381 5.38 0.00 46.79 2.97
3991 7559 2.084546 GGGAACACCTTGTGTGCTATC 58.915 52.381 5.38 0.00 46.79 2.08
3992 7560 2.552155 GGGAACACCTTGTGTGCTATCA 60.552 50.000 5.38 0.00 46.79 2.15
3993 7561 3.146066 GGAACACCTTGTGTGCTATCAA 58.854 45.455 5.38 0.00 46.79 2.57
3994 7562 3.568007 GGAACACCTTGTGTGCTATCAAA 59.432 43.478 5.38 0.00 46.79 2.69
3995 7563 4.537015 GAACACCTTGTGTGCTATCAAAC 58.463 43.478 0.00 0.00 46.79 2.93
3996 7564 3.003275 AACACCTTGTGTGCTATCAAACG 59.997 43.478 0.00 0.00 46.79 3.60
3997 7565 2.548057 CACCTTGTGTGCTATCAAACGT 59.452 45.455 0.00 0.00 38.34 3.99
3998 7566 2.806244 ACCTTGTGTGCTATCAAACGTC 59.194 45.455 0.00 0.00 33.01 4.34
3999 7567 2.805671 CCTTGTGTGCTATCAAACGTCA 59.194 45.455 0.00 0.00 33.01 4.35
4000 7568 3.363970 CCTTGTGTGCTATCAAACGTCAC 60.364 47.826 0.00 0.00 33.01 3.67
4001 7569 2.827652 TGTGTGCTATCAAACGTCACA 58.172 42.857 0.34 0.34 33.01 3.58
4002 7570 3.198872 TGTGTGCTATCAAACGTCACAA 58.801 40.909 5.66 0.00 39.07 3.33
4003 7571 3.001838 TGTGTGCTATCAAACGTCACAAC 59.998 43.478 5.66 2.58 39.07 3.32
4013 7581 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
4014 7582 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
4015 7583 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
4016 7584 2.762745 GTCACAACGTAACTGGGTGAT 58.237 47.619 0.00 0.00 40.23 3.06
4017 7585 3.135994 GTCACAACGTAACTGGGTGATT 58.864 45.455 0.00 0.00 40.23 2.57
4018 7586 4.309099 GTCACAACGTAACTGGGTGATTA 58.691 43.478 0.00 0.00 40.23 1.75
4019 7587 4.933400 GTCACAACGTAACTGGGTGATTAT 59.067 41.667 0.00 0.00 40.23 1.28
4020 7588 6.101332 GTCACAACGTAACTGGGTGATTATA 58.899 40.000 0.00 0.00 40.23 0.98
4021 7589 6.591062 GTCACAACGTAACTGGGTGATTATAA 59.409 38.462 0.00 0.00 40.23 0.98
4022 7590 7.118101 GTCACAACGTAACTGGGTGATTATAAA 59.882 37.037 0.00 0.00 40.23 1.40
4023 7591 7.332430 TCACAACGTAACTGGGTGATTATAAAG 59.668 37.037 0.00 0.00 33.88 1.85
4024 7592 7.332430 CACAACGTAACTGGGTGATTATAAAGA 59.668 37.037 0.00 0.00 0.00 2.52
4025 7593 8.044908 ACAACGTAACTGGGTGATTATAAAGAT 58.955 33.333 0.00 0.00 0.00 2.40
4026 7594 8.335356 CAACGTAACTGGGTGATTATAAAGATG 58.665 37.037 0.00 0.00 0.00 2.90
4027 7595 6.482308 ACGTAACTGGGTGATTATAAAGATGC 59.518 38.462 0.00 0.00 0.00 3.91
4028 7596 6.706270 CGTAACTGGGTGATTATAAAGATGCT 59.294 38.462 0.00 0.00 0.00 3.79
4029 7597 7.095607 CGTAACTGGGTGATTATAAAGATGCTC 60.096 40.741 0.00 0.00 0.00 4.26
4030 7598 6.506538 ACTGGGTGATTATAAAGATGCTCT 57.493 37.500 0.00 0.00 0.00 4.09
4031 7599 7.618019 ACTGGGTGATTATAAAGATGCTCTA 57.382 36.000 0.00 0.00 0.00 2.43
4032 7600 7.445945 ACTGGGTGATTATAAAGATGCTCTAC 58.554 38.462 0.00 0.00 0.00 2.59
4033 7601 7.071196 ACTGGGTGATTATAAAGATGCTCTACA 59.929 37.037 0.00 0.00 0.00 2.74
4034 7602 7.445121 TGGGTGATTATAAAGATGCTCTACAG 58.555 38.462 0.00 0.00 0.00 2.74
4035 7603 6.876257 GGGTGATTATAAAGATGCTCTACAGG 59.124 42.308 0.00 0.00 0.00 4.00
4036 7604 7.445945 GGTGATTATAAAGATGCTCTACAGGT 58.554 38.462 0.00 0.00 0.00 4.00
4037 7605 7.386299 GGTGATTATAAAGATGCTCTACAGGTG 59.614 40.741 0.00 0.00 0.00 4.00
4038 7606 7.928706 GTGATTATAAAGATGCTCTACAGGTGT 59.071 37.037 0.00 0.00 0.00 4.16
4039 7607 8.144478 TGATTATAAAGATGCTCTACAGGTGTC 58.856 37.037 0.00 0.00 0.00 3.67
4040 7608 7.661536 TTATAAAGATGCTCTACAGGTGTCT 57.338 36.000 0.00 0.00 0.00 3.41
4041 7609 4.464069 AAAGATGCTCTACAGGTGTCTC 57.536 45.455 0.00 0.00 0.00 3.36
4042 7610 2.383855 AGATGCTCTACAGGTGTCTCC 58.616 52.381 0.00 0.00 0.00 3.71
4043 7611 1.066303 GATGCTCTACAGGTGTCTCCG 59.934 57.143 0.00 0.00 41.99 4.63
4044 7612 0.037734 TGCTCTACAGGTGTCTCCGA 59.962 55.000 0.00 0.00 41.99 4.55
4045 7613 1.174783 GCTCTACAGGTGTCTCCGAA 58.825 55.000 0.00 0.00 41.99 4.30
4046 7614 1.133407 GCTCTACAGGTGTCTCCGAAG 59.867 57.143 0.00 0.00 41.99 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 166 5.244178 ACGGATAAGGTATCTCATCAACCTC 59.756 44.000 0.00 0.00 42.86 3.85
276 313 6.068010 ACAGGTTGTTGGAATCAAAGATGTA 58.932 36.000 0.00 0.00 34.28 2.29
955 2893 0.842030 TTGAGGTGGTGGAGATGGCT 60.842 55.000 0.00 0.00 0.00 4.75
973 2911 1.374758 CCTTCTTCGGCTGCTCGTT 60.375 57.895 0.00 0.00 0.00 3.85
974 2912 1.608717 ATCCTTCTTCGGCTGCTCGT 61.609 55.000 0.00 0.00 0.00 4.18
976 2914 1.012841 CAATCCTTCTTCGGCTGCTC 58.987 55.000 0.00 0.00 0.00 4.26
978 2916 0.449388 CACAATCCTTCTTCGGCTGC 59.551 55.000 0.00 0.00 0.00 5.25
1067 3718 6.073873 GGCTCGAAGACATTTGAGATAGAATG 60.074 42.308 9.02 0.00 46.23 2.67
1106 3757 0.868406 CAGTTCAAGCACCGGAAGAC 59.132 55.000 9.46 0.00 0.00 3.01
1359 4019 2.288030 ACCTAGACGTTTGAGTGTTCCG 60.288 50.000 0.00 0.00 0.00 4.30
1373 4033 1.067071 ACTTGCAGCGGTAACCTAGAC 60.067 52.381 0.00 0.00 0.00 2.59
1479 4194 8.019652 AGAACTCTAGAATTTGTATATCCCCCT 58.980 37.037 0.00 0.00 0.00 4.79
1689 5100 6.789268 TGAAGAGGAAAATTAGACATTGGGA 58.211 36.000 0.00 0.00 0.00 4.37
1824 5235 9.863845 AGTTAAGCAAAAACTAAGTTAAGCAAA 57.136 25.926 0.00 0.00 35.44 3.68
1825 5236 9.863845 AAGTTAAGCAAAAACTAAGTTAAGCAA 57.136 25.926 0.00 0.00 36.17 3.91
1894 5305 6.096846 CCCGAGGAATCCTGTTAAAAATGAAT 59.903 38.462 6.50 0.00 31.76 2.57
2009 5433 4.084380 GCAGCCAGTTAAGCAAAAACAATC 60.084 41.667 0.00 0.00 0.00 2.67
2354 5825 4.320910 TCGCTGATCACCGAGAGT 57.679 55.556 9.03 0.00 0.00 3.24
2553 6030 1.379044 CCTCCCAGGACAATGGCAC 60.379 63.158 0.00 0.00 37.67 5.01
2633 6110 1.033574 CTCTATGGAGGACCGACACC 58.966 60.000 0.00 0.00 39.42 4.16
2843 6321 5.470368 GTCAGTAGCTCAACAAGTATCACA 58.530 41.667 0.00 0.00 0.00 3.58
2861 6339 1.985116 GGGCTTCCTCCTCGTCAGT 60.985 63.158 0.00 0.00 0.00 3.41
3041 6528 1.555967 GCCTCTCCTCTCAAGTCAGT 58.444 55.000 0.00 0.00 0.00 3.41
3048 6535 0.252881 ATGGTTGGCCTCTCCTCTCA 60.253 55.000 3.32 0.00 35.26 3.27
3285 6792 6.432403 ACAAATTATTTTTCTGGCAAGGGA 57.568 33.333 0.00 0.00 0.00 4.20
3315 6822 8.721019 ATATCAACCAAAATTTGAAATGCGAT 57.279 26.923 7.37 3.49 36.57 4.58
3473 6980 0.245539 ACACCTTATCGACCACCGTG 59.754 55.000 0.00 0.00 39.75 4.94
3588 7156 6.466470 GCATATTTCCTTCAGATAGACCCCTT 60.466 42.308 0.00 0.00 0.00 3.95
3672 7240 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
3673 7241 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
3674 7242 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
3675 7243 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
3676 7244 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
3677 7245 7.773690 AGTTTCCGGTTAATACAATTCTAGCAT 59.226 33.333 0.00 0.00 0.00 3.79
3678 7246 7.107542 AGTTTCCGGTTAATACAATTCTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
3679 7247 7.549615 AGTTTCCGGTTAATACAATTCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
3684 7252 9.723601 TGTACTAAGTTTCCGGTTAATACAATT 57.276 29.630 0.00 0.00 0.00 2.32
3685 7253 9.895138 ATGTACTAAGTTTCCGGTTAATACAAT 57.105 29.630 0.00 0.00 28.05 2.71
3686 7254 9.153721 CATGTACTAAGTTTCCGGTTAATACAA 57.846 33.333 0.00 0.00 28.05 2.41
3687 7255 8.313292 ACATGTACTAAGTTTCCGGTTAATACA 58.687 33.333 0.00 3.81 28.60 2.29
3688 7256 8.598075 CACATGTACTAAGTTTCCGGTTAATAC 58.402 37.037 0.00 0.00 0.00 1.89
3689 7257 8.313292 ACACATGTACTAAGTTTCCGGTTAATA 58.687 33.333 0.00 0.00 0.00 0.98
3690 7258 7.118680 CACACATGTACTAAGTTTCCGGTTAAT 59.881 37.037 0.00 0.00 0.00 1.40
3691 7259 6.424509 CACACATGTACTAAGTTTCCGGTTAA 59.575 38.462 0.00 0.00 0.00 2.01
3692 7260 5.927689 CACACATGTACTAAGTTTCCGGTTA 59.072 40.000 0.00 0.00 0.00 2.85
3693 7261 4.753107 CACACATGTACTAAGTTTCCGGTT 59.247 41.667 0.00 0.00 0.00 4.44
3694 7262 4.039488 TCACACATGTACTAAGTTTCCGGT 59.961 41.667 0.00 0.00 0.00 5.28
3695 7263 4.562082 TCACACATGTACTAAGTTTCCGG 58.438 43.478 0.00 0.00 0.00 5.14
3696 7264 6.721571 ATTCACACATGTACTAAGTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
3697 7265 8.542497 TGTATTCACACATGTACTAAGTTTCC 57.458 34.615 0.00 0.00 0.00 3.13
3705 7273 9.719355 TTTTGTCTATGTATTCACACATGTACT 57.281 29.630 0.00 0.00 39.46 2.73
3706 7274 9.755064 GTTTTGTCTATGTATTCACACATGTAC 57.245 33.333 0.00 0.00 39.46 2.90
3707 7275 9.495572 TGTTTTGTCTATGTATTCACACATGTA 57.504 29.630 0.00 0.00 39.46 2.29
3708 7276 8.389779 TGTTTTGTCTATGTATTCACACATGT 57.610 30.769 0.00 0.00 39.46 3.21
3709 7277 8.720562 TCTGTTTTGTCTATGTATTCACACATG 58.279 33.333 0.00 0.00 39.46 3.21
3710 7278 8.846943 TCTGTTTTGTCTATGTATTCACACAT 57.153 30.769 0.00 0.00 41.88 3.21
3711 7279 7.931407 ACTCTGTTTTGTCTATGTATTCACACA 59.069 33.333 0.00 0.00 37.54 3.72
3712 7280 8.223769 CACTCTGTTTTGTCTATGTATTCACAC 58.776 37.037 0.00 0.00 37.54 3.82
3713 7281 7.931407 ACACTCTGTTTTGTCTATGTATTCACA 59.069 33.333 0.00 0.00 39.52 3.58
3714 7282 8.311650 ACACTCTGTTTTGTCTATGTATTCAC 57.688 34.615 0.00 0.00 0.00 3.18
3715 7283 7.602644 GGACACTCTGTTTTGTCTATGTATTCA 59.397 37.037 2.04 0.00 41.65 2.57
3716 7284 7.064728 GGGACACTCTGTTTTGTCTATGTATTC 59.935 40.741 2.04 0.00 41.65 1.75
3717 7285 6.879458 GGGACACTCTGTTTTGTCTATGTATT 59.121 38.462 2.04 0.00 41.65 1.89
3718 7286 6.213600 AGGGACACTCTGTTTTGTCTATGTAT 59.786 38.462 2.04 0.00 41.65 2.29
3719 7287 5.542635 AGGGACACTCTGTTTTGTCTATGTA 59.457 40.000 2.04 0.00 41.65 2.29
3720 7288 4.348168 AGGGACACTCTGTTTTGTCTATGT 59.652 41.667 2.04 0.00 41.65 2.29
3721 7289 4.899502 AGGGACACTCTGTTTTGTCTATG 58.100 43.478 2.04 0.00 41.65 2.23
3722 7290 5.780793 ACTAGGGACACTCTGTTTTGTCTAT 59.219 40.000 0.00 0.00 41.65 1.98
3723 7291 5.145564 ACTAGGGACACTCTGTTTTGTCTA 58.854 41.667 0.00 0.00 41.65 2.59
3724 7292 3.967987 ACTAGGGACACTCTGTTTTGTCT 59.032 43.478 0.00 0.00 41.65 3.41
3725 7293 4.338379 ACTAGGGACACTCTGTTTTGTC 57.662 45.455 0.00 0.00 41.28 3.18
3726 7294 5.794894 CATACTAGGGACACTCTGTTTTGT 58.205 41.667 0.00 0.00 0.00 2.83
3727 7295 4.631813 GCATACTAGGGACACTCTGTTTTG 59.368 45.833 0.00 0.00 0.00 2.44
3728 7296 4.323562 GGCATACTAGGGACACTCTGTTTT 60.324 45.833 0.00 0.00 0.00 2.43
3729 7297 3.197983 GGCATACTAGGGACACTCTGTTT 59.802 47.826 0.00 0.00 0.00 2.83
3730 7298 2.766828 GGCATACTAGGGACACTCTGTT 59.233 50.000 0.00 0.00 0.00 3.16
3731 7299 2.023888 AGGCATACTAGGGACACTCTGT 60.024 50.000 0.00 0.00 0.00 3.41
3732 7300 2.625790 GAGGCATACTAGGGACACTCTG 59.374 54.545 0.00 0.00 0.00 3.35
3733 7301 2.516277 AGAGGCATACTAGGGACACTCT 59.484 50.000 0.00 0.00 0.00 3.24
3734 7302 2.952116 AGAGGCATACTAGGGACACTC 58.048 52.381 0.00 0.00 0.00 3.51
3735 7303 3.464080 AGTAGAGGCATACTAGGGACACT 59.536 47.826 0.00 0.00 34.21 3.55
3736 7304 3.834938 AGTAGAGGCATACTAGGGACAC 58.165 50.000 0.00 0.00 34.21 3.67
3737 7305 4.079385 TCAAGTAGAGGCATACTAGGGACA 60.079 45.833 3.23 0.00 34.90 4.02
3738 7306 4.278919 GTCAAGTAGAGGCATACTAGGGAC 59.721 50.000 3.23 7.70 34.90 4.46
3739 7307 4.168283 AGTCAAGTAGAGGCATACTAGGGA 59.832 45.833 3.23 0.66 34.90 4.20
3740 7308 4.475345 AGTCAAGTAGAGGCATACTAGGG 58.525 47.826 3.23 0.00 34.90 3.53
3741 7309 5.182380 GCTAGTCAAGTAGAGGCATACTAGG 59.818 48.000 0.00 0.67 36.85 3.02
3742 7310 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
3743 7311 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
3744 7312 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
3745 7313 5.163499 ACAAGCTAGTCAAGTAGAGGCATAC 60.163 44.000 0.00 0.00 0.00 2.39
3746 7314 4.956700 ACAAGCTAGTCAAGTAGAGGCATA 59.043 41.667 0.00 0.00 0.00 3.14
3747 7315 3.772025 ACAAGCTAGTCAAGTAGAGGCAT 59.228 43.478 0.00 0.00 0.00 4.40
3748 7316 3.165875 ACAAGCTAGTCAAGTAGAGGCA 58.834 45.455 0.00 0.00 0.00 4.75
3749 7317 3.878160 ACAAGCTAGTCAAGTAGAGGC 57.122 47.619 0.00 0.00 0.00 4.70
3750 7318 7.548097 TGATTAACAAGCTAGTCAAGTAGAGG 58.452 38.462 0.00 0.00 0.00 3.69
3751 7319 8.988064 TTGATTAACAAGCTAGTCAAGTAGAG 57.012 34.615 0.00 0.00 34.20 2.43
3752 7320 9.424319 CTTTGATTAACAAGCTAGTCAAGTAGA 57.576 33.333 0.00 0.00 39.77 2.59
3753 7321 9.424319 TCTTTGATTAACAAGCTAGTCAAGTAG 57.576 33.333 0.00 0.00 39.77 2.57
3754 7322 9.944376 ATCTTTGATTAACAAGCTAGTCAAGTA 57.056 29.630 0.00 0.00 39.77 2.24
3755 7323 8.725148 CATCTTTGATTAACAAGCTAGTCAAGT 58.275 33.333 0.00 0.00 39.77 3.16
3756 7324 8.180267 CCATCTTTGATTAACAAGCTAGTCAAG 58.820 37.037 0.00 0.00 39.77 3.02
3757 7325 7.665559 ACCATCTTTGATTAACAAGCTAGTCAA 59.334 33.333 0.00 0.00 39.77 3.18
3758 7326 7.168219 ACCATCTTTGATTAACAAGCTAGTCA 58.832 34.615 0.00 0.00 39.77 3.41
3759 7327 7.617041 ACCATCTTTGATTAACAAGCTAGTC 57.383 36.000 0.00 0.00 39.77 2.59
3760 7328 9.515226 TTAACCATCTTTGATTAACAAGCTAGT 57.485 29.630 0.00 0.00 39.77 2.57
3761 7329 9.994432 CTTAACCATCTTTGATTAACAAGCTAG 57.006 33.333 0.00 0.00 39.77 3.42
3762 7330 9.515226 ACTTAACCATCTTTGATTAACAAGCTA 57.485 29.630 0.00 0.00 39.77 3.32
3763 7331 8.409358 ACTTAACCATCTTTGATTAACAAGCT 57.591 30.769 0.00 0.00 39.77 3.74
3764 7332 9.476202 AAACTTAACCATCTTTGATTAACAAGC 57.524 29.630 0.00 0.00 39.77 4.01
3766 7334 9.974980 GGAAACTTAACCATCTTTGATTAACAA 57.025 29.630 0.00 0.00 36.65 2.83
3767 7335 9.362151 AGGAAACTTAACCATCTTTGATTAACA 57.638 29.630 0.00 0.00 37.44 2.41
3768 7336 9.626045 CAGGAAACTTAACCATCTTTGATTAAC 57.374 33.333 0.00 0.00 40.21 2.01
3769 7337 9.581289 TCAGGAAACTTAACCATCTTTGATTAA 57.419 29.630 0.00 0.00 40.21 1.40
3770 7338 9.010029 GTCAGGAAACTTAACCATCTTTGATTA 57.990 33.333 0.00 0.00 40.21 1.75
3771 7339 7.039714 GGTCAGGAAACTTAACCATCTTTGATT 60.040 37.037 0.00 0.00 40.21 2.57
3772 7340 6.434340 GGTCAGGAAACTTAACCATCTTTGAT 59.566 38.462 0.00 0.00 40.21 2.57
3773 7341 5.768164 GGTCAGGAAACTTAACCATCTTTGA 59.232 40.000 0.00 0.00 40.21 2.69
3774 7342 5.534654 TGGTCAGGAAACTTAACCATCTTTG 59.465 40.000 0.00 0.00 40.21 2.77
3775 7343 5.701224 TGGTCAGGAAACTTAACCATCTTT 58.299 37.500 0.00 0.00 40.21 2.52
3776 7344 5.319043 TGGTCAGGAAACTTAACCATCTT 57.681 39.130 0.00 0.00 40.21 2.40
3777 7345 4.993705 TGGTCAGGAAACTTAACCATCT 57.006 40.909 0.00 0.00 40.21 2.90
3778 7346 6.539103 GTCTATGGTCAGGAAACTTAACCATC 59.461 42.308 8.50 0.00 40.21 3.51
3779 7347 6.012858 TGTCTATGGTCAGGAAACTTAACCAT 60.013 38.462 9.96 9.96 40.21 3.55
3780 7348 5.308497 TGTCTATGGTCAGGAAACTTAACCA 59.692 40.000 0.00 0.00 40.21 3.67
3781 7349 5.801380 TGTCTATGGTCAGGAAACTTAACC 58.199 41.667 0.00 0.00 40.21 2.85
3782 7350 6.879458 ACATGTCTATGGTCAGGAAACTTAAC 59.121 38.462 0.00 0.00 37.29 2.01
3783 7351 6.878923 CACATGTCTATGGTCAGGAAACTTAA 59.121 38.462 0.00 0.00 37.29 1.85
3784 7352 6.013725 ACACATGTCTATGGTCAGGAAACTTA 60.014 38.462 0.00 0.00 37.29 2.24
3785 7353 5.221925 ACACATGTCTATGGTCAGGAAACTT 60.222 40.000 0.00 0.00 37.29 2.66
3786 7354 4.287067 ACACATGTCTATGGTCAGGAAACT 59.713 41.667 0.00 0.00 39.13 2.66
3787 7355 4.579869 ACACATGTCTATGGTCAGGAAAC 58.420 43.478 0.00 0.00 38.66 2.78
3788 7356 4.908601 ACACATGTCTATGGTCAGGAAA 57.091 40.909 0.00 0.00 38.66 3.13
3789 7357 4.041567 ACAACACATGTCTATGGTCAGGAA 59.958 41.667 0.00 0.00 37.96 3.36
3790 7358 3.582647 ACAACACATGTCTATGGTCAGGA 59.417 43.478 0.00 0.00 37.96 3.86
3791 7359 3.942829 ACAACACATGTCTATGGTCAGG 58.057 45.455 0.00 0.00 37.96 3.86
3802 7370 6.643360 CATGTTCATCAAATGACAACACATGT 59.357 34.615 16.86 0.00 43.27 3.21
3803 7371 6.864165 TCATGTTCATCAAATGACAACACATG 59.136 34.615 18.04 18.04 46.27 3.21
3804 7372 6.983984 TCATGTTCATCAAATGACAACACAT 58.016 32.000 10.42 3.36 37.44 3.21
3805 7373 6.388435 TCATGTTCATCAAATGACAACACA 57.612 33.333 10.42 1.52 39.39 3.72
3806 7374 6.249893 CGATCATGTTCATCAAATGACAACAC 59.750 38.462 10.42 1.19 39.39 3.32
3807 7375 6.316319 CGATCATGTTCATCAAATGACAACA 58.684 36.000 10.55 10.55 39.39 3.33
3808 7376 5.228635 GCGATCATGTTCATCAAATGACAAC 59.771 40.000 4.71 0.00 39.39 3.32
3809 7377 5.106237 TGCGATCATGTTCATCAAATGACAA 60.106 36.000 4.71 0.00 39.39 3.18
3810 7378 4.395542 TGCGATCATGTTCATCAAATGACA 59.604 37.500 4.71 0.00 39.39 3.58
3811 7379 4.912214 TGCGATCATGTTCATCAAATGAC 58.088 39.130 4.71 0.00 39.39 3.06
3812 7380 5.297278 TGATGCGATCATGTTCATCAAATGA 59.703 36.000 14.55 0.00 41.36 2.57
3813 7381 5.516090 TGATGCGATCATGTTCATCAAATG 58.484 37.500 14.55 0.00 41.36 2.32
3814 7382 5.761165 TGATGCGATCATGTTCATCAAAT 57.239 34.783 14.55 0.68 41.36 2.32
3826 7394 5.473066 TCATTCTCCTAATGATGCGATCA 57.527 39.130 0.00 2.05 44.55 2.92
3833 7401 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
3834 7402 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
3835 7403 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
3836 7404 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
3837 7405 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
3838 7406 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
3839 7407 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
3840 7408 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
3841 7409 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
3842 7410 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
3843 7411 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
3844 7412 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
3845 7413 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
3846 7414 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
3847 7415 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
3853 7421 0.991920 AACGGATGGGTCTTGTCCAT 59.008 50.000 0.00 0.00 46.73 3.41
3854 7422 1.553248 CTAACGGATGGGTCTTGTCCA 59.447 52.381 0.00 0.00 38.82 4.02
3855 7423 1.742750 GCTAACGGATGGGTCTTGTCC 60.743 57.143 0.00 0.00 0.00 4.02
3856 7424 1.207329 AGCTAACGGATGGGTCTTGTC 59.793 52.381 0.00 0.00 0.00 3.18
3857 7425 1.276622 AGCTAACGGATGGGTCTTGT 58.723 50.000 0.00 0.00 0.00 3.16
3858 7426 2.403252 AAGCTAACGGATGGGTCTTG 57.597 50.000 0.00 0.00 0.00 3.02
3859 7427 2.158943 GCTAAGCTAACGGATGGGTCTT 60.159 50.000 0.00 0.00 0.00 3.01
3860 7428 1.413077 GCTAAGCTAACGGATGGGTCT 59.587 52.381 0.00 0.00 0.00 3.85
3861 7429 1.138266 TGCTAAGCTAACGGATGGGTC 59.862 52.381 0.00 0.00 0.00 4.46
3862 7430 1.200519 TGCTAAGCTAACGGATGGGT 58.799 50.000 0.00 0.00 0.00 4.51
3863 7431 2.550830 ATGCTAAGCTAACGGATGGG 57.449 50.000 0.00 0.00 0.00 4.00
3864 7432 5.237815 TCATTATGCTAAGCTAACGGATGG 58.762 41.667 0.00 0.00 0.00 3.51
3865 7433 6.237675 CGATCATTATGCTAAGCTAACGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3866 7434 5.807520 CGATCATTATGCTAAGCTAACGGAT 59.192 40.000 0.00 0.00 0.00 4.18
3867 7435 5.161358 CGATCATTATGCTAAGCTAACGGA 58.839 41.667 0.00 0.00 0.00 4.69
3868 7436 4.923871 ACGATCATTATGCTAAGCTAACGG 59.076 41.667 0.00 0.00 0.00 4.44
3869 7437 6.453643 AACGATCATTATGCTAAGCTAACG 57.546 37.500 0.00 0.00 0.00 3.18
3870 7438 8.979574 ACTTAACGATCATTATGCTAAGCTAAC 58.020 33.333 0.00 0.00 0.00 2.34
3871 7439 9.542462 AACTTAACGATCATTATGCTAAGCTAA 57.458 29.630 0.00 0.00 0.00 3.09
3872 7440 9.542462 AAACTTAACGATCATTATGCTAAGCTA 57.458 29.630 0.00 0.00 0.00 3.32
3873 7441 8.438676 AAACTTAACGATCATTATGCTAAGCT 57.561 30.769 0.00 0.00 0.00 3.74
3878 7446 9.450807 GCAATAAAACTTAACGATCATTATGCT 57.549 29.630 0.00 0.00 0.00 3.79
3879 7447 9.450807 AGCAATAAAACTTAACGATCATTATGC 57.549 29.630 0.00 0.00 0.00 3.14
3884 7452 9.450807 GCAATAGCAATAAAACTTAACGATCAT 57.549 29.630 0.00 0.00 41.58 2.45
3885 7453 8.673711 AGCAATAGCAATAAAACTTAACGATCA 58.326 29.630 0.00 0.00 45.49 2.92
3886 7454 9.503427 AAGCAATAGCAATAAAACTTAACGATC 57.497 29.630 0.00 0.00 45.49 3.69
3887 7455 9.855021 AAAGCAATAGCAATAAAACTTAACGAT 57.145 25.926 0.00 0.00 45.49 3.73
3888 7456 9.337091 GAAAGCAATAGCAATAAAACTTAACGA 57.663 29.630 0.00 0.00 45.49 3.85
3889 7457 9.341899 AGAAAGCAATAGCAATAAAACTTAACG 57.658 29.630 0.00 0.00 45.49 3.18
3893 7461 9.933723 ATGAAGAAAGCAATAGCAATAAAACTT 57.066 25.926 0.00 0.00 45.49 2.66
3894 7462 9.362539 CATGAAGAAAGCAATAGCAATAAAACT 57.637 29.630 0.00 0.00 45.49 2.66
3895 7463 9.357652 TCATGAAGAAAGCAATAGCAATAAAAC 57.642 29.630 0.00 0.00 45.49 2.43
3896 7464 9.357652 GTCATGAAGAAAGCAATAGCAATAAAA 57.642 29.630 0.00 0.00 45.49 1.52
3897 7465 8.742777 AGTCATGAAGAAAGCAATAGCAATAAA 58.257 29.630 0.00 0.00 45.49 1.40
3898 7466 8.284945 AGTCATGAAGAAAGCAATAGCAATAA 57.715 30.769 0.00 0.00 45.49 1.40
3899 7467 7.870509 AGTCATGAAGAAAGCAATAGCAATA 57.129 32.000 0.00 0.00 45.49 1.90
3900 7468 6.770746 AGTCATGAAGAAAGCAATAGCAAT 57.229 33.333 0.00 0.00 45.49 3.56
3901 7469 6.579666 AAGTCATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
3902 7470 6.654582 TGTAAGTCATGAAGAAAGCAATAGCA 59.345 34.615 0.00 0.00 45.49 3.49
3903 7471 6.963805 GTGTAAGTCATGAAGAAAGCAATAGC 59.036 38.462 0.00 0.00 42.56 2.97
3904 7472 8.032952 TGTGTAAGTCATGAAGAAAGCAATAG 57.967 34.615 0.00 0.00 0.00 1.73
3905 7473 7.977789 TGTGTAAGTCATGAAGAAAGCAATA 57.022 32.000 0.00 0.00 0.00 1.90
3906 7474 6.882610 TGTGTAAGTCATGAAGAAAGCAAT 57.117 33.333 0.00 0.00 0.00 3.56
3907 7475 6.882610 ATGTGTAAGTCATGAAGAAAGCAA 57.117 33.333 0.00 0.00 0.00 3.91
3908 7476 8.565896 AATATGTGTAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 0.00 3.91
3909 7477 8.125448 GGAATATGTGTAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 0.00 3.51
3910 7478 9.388506 AGGAATATGTGTAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 0.00 2.62
3911 7479 9.383519 GAGGAATATGTGTAAGTCATGAAGAAA 57.616 33.333 0.00 0.00 0.00 2.52
3912 7480 8.762645 AGAGGAATATGTGTAAGTCATGAAGAA 58.237 33.333 0.00 0.00 0.00 2.52
3913 7481 8.200120 CAGAGGAATATGTGTAAGTCATGAAGA 58.800 37.037 0.00 0.00 0.00 2.87
3914 7482 8.200120 TCAGAGGAATATGTGTAAGTCATGAAG 58.800 37.037 0.00 0.00 0.00 3.02
3915 7483 7.981789 GTCAGAGGAATATGTGTAAGTCATGAA 59.018 37.037 0.00 0.00 0.00 2.57
3916 7484 7.343057 AGTCAGAGGAATATGTGTAAGTCATGA 59.657 37.037 0.00 0.00 0.00 3.07
3917 7485 7.495901 AGTCAGAGGAATATGTGTAAGTCATG 58.504 38.462 0.00 0.00 0.00 3.07
3918 7486 7.667575 AGTCAGAGGAATATGTGTAAGTCAT 57.332 36.000 0.00 0.00 0.00 3.06
3919 7487 8.633561 CATAGTCAGAGGAATATGTGTAAGTCA 58.366 37.037 4.50 0.00 43.56 3.41
3920 7488 8.851145 TCATAGTCAGAGGAATATGTGTAAGTC 58.149 37.037 10.70 0.00 46.74 3.01
3921 7489 8.768501 TCATAGTCAGAGGAATATGTGTAAGT 57.231 34.615 10.70 0.00 46.74 2.24
3922 7490 9.072375 TCTCATAGTCAGAGGAATATGTGTAAG 57.928 37.037 10.70 3.39 46.74 2.34
3923 7491 8.996651 TCTCATAGTCAGAGGAATATGTGTAA 57.003 34.615 10.70 0.00 46.74 2.41
3924 7492 9.593565 AATCTCATAGTCAGAGGAATATGTGTA 57.406 33.333 10.70 1.34 46.74 2.90
3925 7493 8.489676 AATCTCATAGTCAGAGGAATATGTGT 57.510 34.615 10.70 0.55 46.74 3.72
3931 7499 9.995003 GTTTCATAATCTCATAGTCAGAGGAAT 57.005 33.333 0.00 0.00 33.92 3.01
3932 7500 9.206690 AGTTTCATAATCTCATAGTCAGAGGAA 57.793 33.333 0.00 0.00 33.92 3.36
3933 7501 8.774546 AGTTTCATAATCTCATAGTCAGAGGA 57.225 34.615 0.00 0.00 33.92 3.71
3934 7502 8.087750 GGAGTTTCATAATCTCATAGTCAGAGG 58.912 40.741 0.00 0.00 33.92 3.69
3935 7503 8.087750 GGGAGTTTCATAATCTCATAGTCAGAG 58.912 40.741 0.00 0.00 34.42 3.35
3936 7504 7.255625 CGGGAGTTTCATAATCTCATAGTCAGA 60.256 40.741 0.00 0.00 0.00 3.27
3937 7505 6.865726 CGGGAGTTTCATAATCTCATAGTCAG 59.134 42.308 0.00 0.00 0.00 3.51
3938 7506 6.549736 TCGGGAGTTTCATAATCTCATAGTCA 59.450 38.462 0.00 0.00 0.00 3.41
3939 7507 6.982852 TCGGGAGTTTCATAATCTCATAGTC 58.017 40.000 0.00 0.00 0.00 2.59
3940 7508 6.978674 TCGGGAGTTTCATAATCTCATAGT 57.021 37.500 0.00 0.00 0.00 2.12
3941 7509 9.360093 GTATTCGGGAGTTTCATAATCTCATAG 57.640 37.037 0.00 0.00 0.00 2.23
3942 7510 8.311836 GGTATTCGGGAGTTTCATAATCTCATA 58.688 37.037 0.00 0.00 0.00 2.15
3943 7511 7.162082 GGTATTCGGGAGTTTCATAATCTCAT 58.838 38.462 0.00 0.00 0.00 2.90
3944 7512 6.522054 GGTATTCGGGAGTTTCATAATCTCA 58.478 40.000 0.00 0.00 0.00 3.27
3945 7513 5.634020 CGGTATTCGGGAGTTTCATAATCTC 59.366 44.000 0.00 0.00 34.75 2.75
3946 7514 5.539048 CGGTATTCGGGAGTTTCATAATCT 58.461 41.667 0.00 0.00 34.75 2.40
3947 7515 5.840940 CGGTATTCGGGAGTTTCATAATC 57.159 43.478 0.00 0.00 34.75 1.75
3961 7529 1.153309 GGTGTTCCCCCGGTATTCG 60.153 63.158 0.00 0.00 38.88 3.34
3962 7530 0.622136 AAGGTGTTCCCCCGGTATTC 59.378 55.000 0.00 0.00 0.00 1.75
3963 7531 0.330267 CAAGGTGTTCCCCCGGTATT 59.670 55.000 0.00 0.00 0.00 1.89
3964 7532 0.843343 ACAAGGTGTTCCCCCGGTAT 60.843 55.000 0.00 0.00 0.00 2.73
3965 7533 1.461849 ACAAGGTGTTCCCCCGGTA 60.462 57.895 0.00 0.00 0.00 4.02
3966 7534 2.775219 ACAAGGTGTTCCCCCGGT 60.775 61.111 0.00 0.00 0.00 5.28
3967 7535 2.282180 CACAAGGTGTTCCCCCGG 60.282 66.667 0.00 0.00 0.00 5.73
3968 7536 1.896660 CACACAAGGTGTTCCCCCG 60.897 63.158 0.00 0.00 45.08 5.73
3969 7537 2.200337 GCACACAAGGTGTTCCCCC 61.200 63.158 0.00 0.00 45.08 5.40
3970 7538 0.109723 TAGCACACAAGGTGTTCCCC 59.890 55.000 0.00 0.00 45.08 4.81
3971 7539 2.084546 GATAGCACACAAGGTGTTCCC 58.915 52.381 0.00 0.00 45.08 3.97
3972 7540 2.778299 TGATAGCACACAAGGTGTTCC 58.222 47.619 0.00 0.00 45.08 3.62
3973 7541 4.537015 GTTTGATAGCACACAAGGTGTTC 58.463 43.478 0.00 0.00 45.08 3.18
3974 7542 3.003275 CGTTTGATAGCACACAAGGTGTT 59.997 43.478 0.00 0.00 45.08 3.32
3977 7545 2.806244 GACGTTTGATAGCACACAAGGT 59.194 45.455 0.00 0.00 0.00 3.50
3978 7546 2.805671 TGACGTTTGATAGCACACAAGG 59.194 45.455 0.00 0.00 0.00 3.61
3979 7547 3.247411 TGTGACGTTTGATAGCACACAAG 59.753 43.478 0.00 0.00 34.85 3.16
3980 7548 3.198872 TGTGACGTTTGATAGCACACAA 58.801 40.909 0.00 0.00 34.85 3.33
3981 7549 2.827652 TGTGACGTTTGATAGCACACA 58.172 42.857 0.00 0.00 34.85 3.72
3982 7550 3.541711 GTTGTGACGTTTGATAGCACAC 58.458 45.455 3.73 0.00 38.98 3.82
3983 7551 2.219903 CGTTGTGACGTTTGATAGCACA 59.780 45.455 0.34 0.34 44.08 4.57
3984 7552 2.822827 CGTTGTGACGTTTGATAGCAC 58.177 47.619 0.00 0.00 44.08 4.40
3996 7564 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
3997 7565 3.478857 AATCACCCAGTTACGTTGTGA 57.521 42.857 0.00 6.41 39.95 3.58
3998 7566 6.971527 TTATAATCACCCAGTTACGTTGTG 57.028 37.500 0.00 0.00 0.00 3.33
3999 7567 7.388437 TCTTTATAATCACCCAGTTACGTTGT 58.612 34.615 0.00 0.00 0.00 3.32
4000 7568 7.837202 TCTTTATAATCACCCAGTTACGTTG 57.163 36.000 0.00 0.00 0.00 4.10
4001 7569 7.012044 GCATCTTTATAATCACCCAGTTACGTT 59.988 37.037 0.00 0.00 0.00 3.99
4002 7570 6.482308 GCATCTTTATAATCACCCAGTTACGT 59.518 38.462 0.00 0.00 0.00 3.57
4003 7571 6.706270 AGCATCTTTATAATCACCCAGTTACG 59.294 38.462 0.00 0.00 0.00 3.18
4004 7572 8.089115 GAGCATCTTTATAATCACCCAGTTAC 57.911 38.462 0.00 0.00 0.00 2.50
4016 7584 7.201920 GGAGACACCTGTAGAGCATCTTTATAA 60.202 40.741 0.00 0.00 40.44 0.98
4017 7585 6.265649 GGAGACACCTGTAGAGCATCTTTATA 59.734 42.308 0.00 0.00 40.44 0.98
4018 7586 5.069781 GGAGACACCTGTAGAGCATCTTTAT 59.930 44.000 0.00 0.00 40.44 1.40
4019 7587 4.402793 GGAGACACCTGTAGAGCATCTTTA 59.597 45.833 0.00 0.00 40.44 1.85
4020 7588 3.196685 GGAGACACCTGTAGAGCATCTTT 59.803 47.826 0.00 0.00 40.44 2.52
4021 7589 2.763448 GGAGACACCTGTAGAGCATCTT 59.237 50.000 0.00 0.00 40.44 2.40
4022 7590 2.383855 GGAGACACCTGTAGAGCATCT 58.616 52.381 0.00 0.00 42.03 2.90
4023 7591 1.066303 CGGAGACACCTGTAGAGCATC 59.934 57.143 0.00 0.00 36.31 3.91
4024 7592 1.107114 CGGAGACACCTGTAGAGCAT 58.893 55.000 0.00 0.00 36.31 3.79
4025 7593 0.037734 TCGGAGACACCTGTAGAGCA 59.962 55.000 0.00 0.00 36.31 4.26
4026 7594 1.133407 CTTCGGAGACACCTGTAGAGC 59.867 57.143 0.00 0.00 34.32 4.09
4027 7595 1.746220 CCTTCGGAGACACCTGTAGAG 59.254 57.143 0.00 0.00 34.32 2.43
4028 7596 1.075050 ACCTTCGGAGACACCTGTAGA 59.925 52.381 0.00 0.00 34.32 2.59
4029 7597 1.202582 CACCTTCGGAGACACCTGTAG 59.797 57.143 0.00 0.00 34.32 2.74
4030 7598 1.254026 CACCTTCGGAGACACCTGTA 58.746 55.000 0.00 0.00 34.32 2.74
4031 7599 0.759436 ACACCTTCGGAGACACCTGT 60.759 55.000 0.00 0.00 34.32 4.00
4032 7600 2.050269 ACACCTTCGGAGACACCTG 58.950 57.895 0.00 0.00 34.32 4.00
4033 7601 4.621269 ACACCTTCGGAGACACCT 57.379 55.556 0.00 0.00 34.32 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.