AutoCloner

Multiple sequence alignment - TraesCS2D01G597100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G597100	chr2D	100.000	3087	0	0	1	3087	649675849	649678935	0.000000e+00	5701.0
1	TraesCS2D01G597100	chr2D	83.042	743	109	13	1470	2198	614844335	614845074	0.000000e+00	658.0
2	TraesCS2D01G597100	chr2D	84.718	602	84	7	1377	1974	649599833	649599236	2.050000e-166	595.0
3	TraesCS2D01G597100	chr2D	77.900	819	153	17	1463	2260	614853915	614853104	4.630000e-133	484.0
4	TraesCS2D01G597100	chr2A	93.696	2411	96	16	713	3078	775187416	775185017	0.000000e+00	3559.0
5	TraesCS2D01G597100	chr2A	94.159	719	35	3	1	713	775188434	775187717	0.000000e+00	1088.0
6	TraesCS2D01G597100	chr2A	86.763	763	93	6	1500	2260	775215877	775216633	0.000000e+00	843.0
7	TraesCS2D01G597100	chr2A	85.567	97	9	4	2777	2870	775244231	775244325	2.530000e-16	97.1
8	TraesCS2D01G597100	chr2A	78.049	123	19	6	2966	3084	20798878	20798760	1.540000e-08	71.3
9	TraesCS2D01G597100	chr2B	92.060	995	54	9	713	1705	785310427	785311398	0.000000e+00	1376.0
10	TraesCS2D01G597100	chr2B	90.857	525	42	6	1693	2214	785348741	785349262	0.000000e+00	699.0
11	TraesCS2D01G597100	chr2B	83.176	743	108	13	1470	2198	749231300	749232039	0.000000e+00	664.0
12	TraesCS2D01G597100	chr2B	79.839	124	18	7	2952	3072	298151557	298151676	1.970000e-12	84.2
13	TraesCS2D01G597100	chr2B	82.979	94	9	6	2962	3050	49878370	49878279	9.180000e-11	78.7
14	TraesCS2D01G597100	chr1D	83.199	744	112	11	1451	2188	460655838	460655102	0.000000e+00	669.0
15	TraesCS2D01G597100	chr7D	82.386	721	110	12	1470	2177	511213692	511214408	2.030000e-171	612.0
16	TraesCS2D01G597100	chr5A	78.135	622	123	9	1458	2076	32993064	32993675	1.740000e-102	383.0
17	TraesCS2D01G597100	chr6A	83.704	135	19	3	2950	3084	467601106	467600975	1.160000e-24	124.0
18	TraesCS2D01G597100	chrUn	85.981	107	15	0	2957	3063	90499671	90499565	7.000000e-22	115.0
19	TraesCS2D01G597100	chrUn	87.302	63	5	2	2950	3009	141446513	141446451	5.520000e-08	69.4
20	TraesCS2D01G597100	chr5D	87.000	100	12	1	277	376	6246606	6246704	9.050000e-21	111.0
21	TraesCS2D01G597100	chr6B	85.870	92	9	4	2959	3049	647890152	647890240	9.110000e-16	95.3
22	TraesCS2D01G597100	chr6B	93.023	43	2	1	277	319	668968889	668968930	9.240000e-06	62.1
23	TraesCS2D01G597100	chr7B	80.645	124	21	3	2950	3072	637585533	637585412	3.280000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G597100	chr2D	649675849	649678935	3086	False	5701.0	5701	100.0000	1	3087	1	chr2D.!!$F2	3086
1	TraesCS2D01G597100	chr2D	614844335	614845074	739	False	658.0	658	83.0420	1470	2198	1	chr2D.!!$F1	728
2	TraesCS2D01G597100	chr2D	649599236	649599833	597	True	595.0	595	84.7180	1377	1974	1	chr2D.!!$R2	597
3	TraesCS2D01G597100	chr2D	614853104	614853915	811	True	484.0	484	77.9000	1463	2260	1	chr2D.!!$R1	797
4	TraesCS2D01G597100	chr2A	775185017	775188434	3417	True	2323.5	3559	93.9275	1	3078	2	chr2A.!!$R2	3077
5	TraesCS2D01G597100	chr2A	775215877	775216633	756	False	843.0	843	86.7630	1500	2260	1	chr2A.!!$F1	760
6	TraesCS2D01G597100	chr2B	785310427	785311398	971	False	1376.0	1376	92.0600	713	1705	1	chr2B.!!$F3	992
7	TraesCS2D01G597100	chr2B	785348741	785349262	521	False	699.0	699	90.8570	1693	2214	1	chr2B.!!$F4	521
8	TraesCS2D01G597100	chr2B	749231300	749232039	739	False	664.0	664	83.1760	1470	2198	1	chr2B.!!$F2	728
9	TraesCS2D01G597100	chr1D	460655102	460655838	736	True	669.0	669	83.1990	1451	2188	1	chr1D.!!$R1	737
10	TraesCS2D01G597100	chr7D	511213692	511214408	716	False	612.0	612	82.3860	1470	2177	1	chr7D.!!$F1	707
11	TraesCS2D01G597100	chr5A	32993064	32993675	611	False	383.0	383	78.1350	1458	2076	1	chr5A.!!$F1	618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
507	509	0.257328	TGGCCTGTTTCAGTCACCAA	59.743	50.0	3.32	0.0	28.77	3.67	F
673	680	0.383590	TCATGGTGTGCGGTGTTTTG	59.616	50.0	0.00	0.0	0.00	2.44	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1501	1818	0.184933	ATGCTCTCTAGGAGGTCGCT	59.815	55.0	9.44	0.0	42.08	4.93	R
2553	2912	0.038744	CATCTCAGCCCACCCAAACT	59.961	55.0	0.00	0.0	0.00	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	3.070159	TGAGCTCCATCTACTTGTATGCC	59.930	47.826	12.15	0.00	0.00	4.40
44	45	3.070734	AGCTCCATCTACTTGTATGCCTG	59.929	47.826	0.00	0.00	0.00	4.85
49	50	5.302059	TCCATCTACTTGTATGCCTGTCTAC	59.698	44.000	0.00	0.00	0.00	2.59
51	52	6.239430	CCATCTACTTGTATGCCTGTCTACAT	60.239	42.308	0.00	0.00	0.00	2.29
77	78	3.743396	GTGCATACAAGCTACTAGGCATC	59.257	47.826	11.71	4.52	32.72	3.91
94	95	3.144506	GCATCGATTCCACATTGAGGAT	58.855	45.455	3.53	0.00	34.56	3.24
125	126	3.554692	GCACGACGCCCATCTTCG	61.555	66.667	0.00	0.00	41.55	3.79
126	127	2.885644	CACGACGCCCATCTTCGG	60.886	66.667	0.00	0.00	40.30	4.30
130	131	1.017177	CGACGCCCATCTTCGGAAAA	61.017	55.000	0.00	0.00	33.42	2.29
131	132	1.161843	GACGCCCATCTTCGGAAAAA	58.838	50.000	0.00	0.00	0.00	1.94
136	137	2.353605	GCCCATCTTCGGAAAAATGCAA	60.354	45.455	0.00	0.00	0.00	4.08
138	139	3.928375	CCCATCTTCGGAAAAATGCAAAG	59.072	43.478	0.00	0.00	0.00	2.77
185	186	7.318141	CACCTCTACCAAATCTACGAACTAAA	58.682	38.462	0.00	0.00	0.00	1.85
221	222	1.165270	CAATTCCACCAAGTCGTCCC	58.835	55.000	0.00	0.00	0.00	4.46
319	321	5.181811	CACAACATGGACATTCTTCTTAGCA	59.818	40.000	0.00	0.00	0.00	3.49
414	416	2.165641	AGTATTGCACGATGACCGAAGA	59.834	45.455	0.00	0.00	41.76	2.87
434	436	7.062839	CCGAAGAAACAAACAAATCACTTTTGA	59.937	33.333	5.17	0.00	46.36	2.69
435	437	8.431593	CGAAGAAACAAACAAATCACTTTTGAA	58.568	29.630	5.17	0.00	46.36	2.69
507	509	0.257328	TGGCCTGTTTCAGTCACCAA	59.743	50.000	3.32	0.00	28.77	3.67
522	524	1.056660	ACCAACGGAGGAGACACAAT	58.943	50.000	2.13	0.00	0.00	2.71
533	535	5.153950	AGGAGACACAATCTAACCTTGAC	57.846	43.478	0.00	0.00	38.00	3.18
551	553	1.300620	CCACTGAACGCACGAGGAA	60.301	57.895	0.00	0.00	0.00	3.36
602	609	2.811317	GAAGCGGTCGAGGTGCAG	60.811	66.667	6.28	0.00	0.00	4.41
618	625	2.303311	GTGCAGAACCCTAGAAACCTCT	59.697	50.000	0.00	0.00	35.52	3.69
673	680	0.383590	TCATGGTGTGCGGTGTTTTG	59.616	50.000	0.00	0.00	0.00	2.44
682	689	2.255881	CGGTGTTTTGTCCGTCCCC	61.256	63.158	0.00	0.00	41.58	4.81
701	708	1.009829	CGCCCATGTAAGAGCAGTTC	58.990	55.000	0.00	0.00	0.00	3.01
723	1031	9.018582	AGTTCTAGTTATAGTAAAACCTCACGT	57.981	33.333	0.00	0.00	0.00	4.49
859	1167	2.180204	CGTGGCATCCGGAATCACC	61.180	63.158	21.50	15.59	0.00	4.02
1135	1448	2.135933	GTGTCACTTCTCCACCTTTCG	58.864	52.381	0.00	0.00	0.00	3.46
1176	1489	5.611128	GGGTTGTAAGGTTTTACCCAAAA	57.389	39.130	0.00	0.00	46.24	2.44
1346	1659	3.245052	CCACTCAAAGGTTCCTCCATTCT	60.245	47.826	0.00	0.00	39.02	2.40
1722	2040	6.976934	TCATATACACTGATTCACTGCCTA	57.023	37.500	0.00	0.00	0.00	3.93
1734	2061	3.701664	TCACTGCCTACTCTTGAGATGA	58.298	45.455	4.49	0.00	0.00	2.92
2095	2427	3.386726	TCATGACCATTTAGTAGTCCGGG	59.613	47.826	0.00	0.00	0.00	5.73
2235	2591	5.203528	CAAGTAGAATGGGATTGATTGGGT	58.796	41.667	0.00	0.00	0.00	4.51
2266	2622	7.479980	TCGCCTATGTTTTCTATTTTCCAATG	58.520	34.615	0.00	0.00	0.00	2.82
2420	2779	9.806203	CTTTAATGCTGAATCATCCATTGTTTA	57.194	29.630	15.15	0.00	0.00	2.01
2422	2781	9.752961	TTAATGCTGAATCATCCATTGTTTATG	57.247	29.630	15.15	0.00	0.00	1.90
2423	2782	6.778834	TGCTGAATCATCCATTGTTTATGT	57.221	33.333	0.00	0.00	31.99	2.29
2442	2801	3.779759	TGTTGTTGCTTTTGGATCACAC	58.220	40.909	0.00	0.00	0.00	3.82
2470	2829	0.445436	GCGAGTTCCTCATTGCACAG	59.555	55.000	0.00	0.00	0.00	3.66
2478	2837	3.173151	TCCTCATTGCACAGGAGAACTA	58.827	45.455	9.41	0.00	33.57	2.24
2510	2869	3.403038	ACCGACTTTGGAAGTGAAGATG	58.597	45.455	0.00	0.00	43.03	2.90
2572	2931	0.038744	AGTTTGGGTGGGCTGAGATG	59.961	55.000	0.00	0.00	0.00	2.90
2626	3008	6.351327	GCTAGTATGAGCACGATTTTTCTT	57.649	37.500	0.00	0.00	42.36	2.52
2681	3063	3.234386	TCTGCGATCTCGTATAAATGCG	58.766	45.455	1.14	0.00	42.22	4.73
2685	3067	4.089923	TGCGATCTCGTATAAATGCGATTG	59.910	41.667	3.63	0.00	43.54	2.67
2723	3105	4.271533	TGTTAAATTCACACAGTCGGTCAC	59.728	41.667	0.00	0.00	0.00	3.67
2729	3111	1.192312	CACACAGTCGGTCACAATTCG	59.808	52.381	0.00	0.00	0.00	3.34
2777	3159	3.704566	ACGAGTGTATGTACATCCCATGT	59.295	43.478	12.68	8.02	46.92	3.21
2778	3160	4.891168	ACGAGTGTATGTACATCCCATGTA	59.109	41.667	12.68	0.00	44.38	2.29
2856	3238	0.179215	GATCGACGCCTTGCTGTTTG	60.179	55.000	0.00	0.00	0.00	2.93
2857	3239	0.884704	ATCGACGCCTTGCTGTTTGT	60.885	50.000	0.00	0.00	0.00	2.83
2905	3287	1.605710	AGCGGTTCATATTGCAGCATC	59.394	47.619	0.00	0.00	0.00	3.91
2936	3318	2.517959	TGCAGTTTCTGGCTTGCTATT	58.482	42.857	0.00	0.00	31.21	1.73
2945	3327	5.835113	TCTGGCTTGCTATTTTGTTATCC	57.165	39.130	0.00	0.00	0.00	2.59
2948	3330	5.964758	TGGCTTGCTATTTTGTTATCCTTG	58.035	37.500	0.00	0.00	0.00	3.61
2977	3359	8.992287	TTCGAAAAAGGTCGTTCTTTATTAAC	57.008	30.769	0.00	0.00	41.80	2.01
2997	3379	8.985315	ATTAACTCATAATGAAGCATCAAGGA	57.015	30.769	0.00	0.00	39.49	3.36
3013	3395	6.919662	GCATCAAGGATATACAAAACACCATG	59.080	38.462	0.00	0.00	0.00	3.66
3032	3414	0.031449	GAGCATACACTCGGCCTCTC	59.969	60.000	0.00	0.00	0.00	3.20
3053	3442	6.077993	TCTCCATAGTTAGGATGCACATAGT	58.922	40.000	0.00	0.00	33.99	2.12
3056	3445	6.015095	TCCATAGTTAGGATGCACATAGTCAG	60.015	42.308	0.00	0.00	0.00	3.51
3078	3467	3.243367	GCACCAATAACACACACACACAT	60.243	43.478	0.00	0.00	0.00	3.21
3079	3468	4.023622	GCACCAATAACACACACACACATA	60.024	41.667	0.00	0.00	0.00	2.29
3080	3469	5.506483	GCACCAATAACACACACACACATAA	60.506	40.000	0.00	0.00	0.00	1.90
3081	3470	6.499172	CACCAATAACACACACACACATAAA	58.501	36.000	0.00	0.00	0.00	1.40
3082	3471	7.144661	CACCAATAACACACACACACATAAAT	58.855	34.615	0.00	0.00	0.00	1.40
3083	3472	7.651304	CACCAATAACACACACACACATAAATT	59.349	33.333	0.00	0.00	0.00	1.82
3084	3473	7.865385	ACCAATAACACACACACACATAAATTC	59.135	33.333	0.00	0.00	0.00	2.17
3085	3474	7.864882	CCAATAACACACACACACATAAATTCA	59.135	33.333	0.00	0.00	0.00	2.57
3086	3475	8.689954	CAATAACACACACACACATAAATTCAC	58.310	33.333	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.070734	CAGGCATACAAGTAGATGGAGCT	59.929	47.826	0.00	0.00	0.00	4.09
51	52	2.768253	AGTAGCTTGTATGCACTGCA	57.232	45.000	6.09	6.09	44.86	4.41
77	78	4.214971	GGATGAATCCTCAATGTGGAATCG	59.785	45.833	8.20	0.00	43.73	3.34
94	95	2.434185	GTGCGGCTCGTGGATGAA	60.434	61.111	0.00	0.00	0.00	2.57
125	126	4.931601	GGACTCCATTCTTTGCATTTTTCC	59.068	41.667	0.00	0.00	0.00	3.13
126	127	5.540911	TGGACTCCATTCTTTGCATTTTTC	58.459	37.500	0.00	0.00	0.00	2.29
221	222	1.193874	GTTGGGTTAAGTCTCGCAACG	59.806	52.381	7.62	0.00	43.48	4.10
325	327	7.502060	ACTAGCCAGTATCCTATTGCAATAT	57.498	36.000	19.17	8.84	31.45	1.28
379	381	7.077605	TCGTGCAATACTTTTCATTGAAGAAG	58.922	34.615	14.44	14.44	35.77	2.85
400	402	3.001838	TGTTTGTTTCTTCGGTCATCGTG	59.998	43.478	0.00	0.00	40.32	4.35
507	509	2.496470	GGTTAGATTGTGTCTCCTCCGT	59.504	50.000	0.00	0.00	38.42	4.69
522	524	2.547218	GCGTTCAGTGGTCAAGGTTAGA	60.547	50.000	0.00	0.00	0.00	2.10
533	535	1.284982	CTTCCTCGTGCGTTCAGTGG	61.285	60.000	0.00	0.00	0.00	4.00
551	553	1.199425	GGAGAAACCCGGGACCTTCT	61.199	60.000	32.02	28.53	0.00	2.85
602	609	4.353383	AACACAGAGGTTTCTAGGGTTC	57.647	45.455	0.00	0.00	28.46	3.62
618	625	1.153066	TGGAAGGCGCTCAAACACA	60.153	52.632	7.64	0.00	0.00	3.72
677	684	1.146263	CTCTTACATGGGCGGGGAC	59.854	63.158	0.00	0.00	0.00	4.46
679	686	2.203209	GCTCTTACATGGGCGGGG	60.203	66.667	0.00	0.00	0.00	5.73
682	689	1.009829	GAACTGCTCTTACATGGGCG	58.990	55.000	0.00	0.00	0.00	6.13
701	708	7.374491	GCGTACGTGAGGTTTTACTATAACTAG	59.626	40.741	17.90	0.00	0.00	2.57
723	1031	3.818787	GGCGGAAGTCGAGGCGTA	61.819	66.667	0.00	0.00	42.43	4.42
859	1167	2.176055	CGACGACTGGGACGTGAG	59.824	66.667	0.00	0.00	43.97	3.51
916	1224	1.549203	CAAAACCCTGGACCCAGATG	58.451	55.000	17.19	10.15	46.30	2.90
997	1306	0.394762	TTGCACTGATCTGCCATCCC	60.395	55.000	4.64	0.00	36.21	3.85
1041	1350	0.450983	CGTACGACCTCCCTTCAGAC	59.549	60.000	10.44	0.00	0.00	3.51
1043	1352	0.170561	CACGTACGACCTCCCTTCAG	59.829	60.000	24.41	0.00	0.00	3.02
1149	1462	5.190992	GGTAAAACCTTACAACCCAGTTG	57.809	43.478	5.94	5.94	41.12	3.16
1176	1489	1.004044	CCATCTTCTGCCAAGTCACCT	59.996	52.381	0.00	0.00	0.00	4.00
1346	1659	4.082523	CCCGCTCAAAGAGGCCGA	62.083	66.667	0.00	0.00	33.47	5.54
1498	1815	1.817740	GCTCTCTAGGAGGTCGCTGAT	60.818	57.143	9.44	0.00	42.08	2.90
1501	1818	0.184933	ATGCTCTCTAGGAGGTCGCT	59.815	55.000	9.44	0.00	42.08	4.93
1623	1941	1.066143	GCCGACTTTCTCCTTCATGGA	60.066	52.381	0.00	0.00	43.86	3.41
1722	2040	3.834813	TGGTTGCTAGTCATCTCAAGAGT	59.165	43.478	0.00	0.00	0.00	3.24
1734	2061	1.545651	GGCCTCACTTTGGTTGCTAGT	60.546	52.381	0.00	0.00	0.00	2.57
2092	2424	2.104132	TGCGATGATCGTGACCCG	59.896	61.111	16.83	0.00	42.81	5.28
2095	2427	3.116300	ACTTATGTGCGATGATCGTGAC	58.884	45.455	16.83	13.37	42.81	3.67
2235	2591	8.918202	AAAATAGAAAACATAGGCGATCCATA	57.082	30.769	0.00	0.00	33.74	2.74
2286	2642	4.503714	TGAACAGTTGAAGTCCTTCCTT	57.496	40.909	4.67	0.00	38.77	3.36
2289	2645	7.913674	ATAGATTGAACAGTTGAAGTCCTTC	57.086	36.000	0.00	0.00	39.91	3.46
2397	2756	8.916062	ACATAAACAATGGATGATTCAGCATTA	58.084	29.630	4.07	0.00	40.16	1.90
2420	2779	4.370917	GTGTGATCCAAAAGCAACAACAT	58.629	39.130	0.00	0.00	0.00	2.71
2422	2781	2.788786	CGTGTGATCCAAAAGCAACAAC	59.211	45.455	0.00	0.00	0.00	3.32
2423	2782	2.685388	TCGTGTGATCCAAAAGCAACAA	59.315	40.909	0.00	0.00	0.00	2.83
2442	2801	1.004918	AGGAACTCGCCCAAACTCG	60.005	57.895	0.00	0.00	0.00	4.18
2470	2829	6.035217	GTCGGTCAGAATAAACTAGTTCTCC	58.965	44.000	8.95	0.00	32.60	3.71
2478	2837	5.223449	TCCAAAGTCGGTCAGAATAAACT	57.777	39.130	0.00	0.00	0.00	2.66
2517	2876	6.635755	ACAATGAAGAAAAAGGACGGAAAAA	58.364	32.000	0.00	0.00	0.00	1.94
2553	2912	0.038744	CATCTCAGCCCACCCAAACT	59.961	55.000	0.00	0.00	0.00	2.66
2572	2931	5.582665	AGTTCGAAATTCATAGCAAGAGACC	59.417	40.000	0.00	0.00	0.00	3.85
2626	3008	1.671845	CGACGGTTTCCAAGTTCCAAA	59.328	47.619	0.00	0.00	0.00	3.28
2685	3067	9.821662	GTGAATTTAACACAACCTATGTAGAAC	57.178	33.333	0.00	0.00	41.46	3.01
2714	3096	0.966920	ACTCCGAATTGTGACCGACT	59.033	50.000	0.00	0.00	0.00	4.18
2723	3105	3.563808	TCACAGGACAAAACTCCGAATTG	59.436	43.478	0.00	0.00	35.20	2.32
2729	3111	5.123936	ACTAGTTTCACAGGACAAAACTCC	58.876	41.667	3.23	0.00	41.14	3.85
2777	3159	4.694037	CGACCACCGTCAGAGATACATATA	59.306	45.833	0.00	0.00	39.11	0.86
2778	3160	3.502595	CGACCACCGTCAGAGATACATAT	59.497	47.826	0.00	0.00	39.11	1.78
2856	3238	3.414700	CCCGCTCGCTGTGTCAAC	61.415	66.667	0.00	0.00	0.00	3.18
2905	3287	3.801050	CCAGAAACTGCATAGATCGTCAG	59.199	47.826	0.00	5.45	0.00	3.51
2936	3318	8.874816	CCTTTTTCGAAAAACAAGGATAACAAA	58.125	29.630	27.64	6.80	36.16	2.83
2945	3327	5.798434	AGAACGACCTTTTTCGAAAAACAAG	59.202	36.000	27.64	21.12	41.78	3.16
2948	3330	6.621737	AAAGAACGACCTTTTTCGAAAAAC	57.378	33.333	27.64	18.57	41.78	2.43
2977	3359	9.662947	TGTATATCCTTGATGCTTCATTATGAG	57.337	33.333	2.75	0.00	0.00	2.90
2997	3379	7.775093	AGTGTATGCTCATGGTGTTTTGTATAT	59.225	33.333	0.00	0.00	0.00	0.86
3013	3395	0.031449	GAGAGGCCGAGTGTATGCTC	59.969	60.000	0.00	0.00	0.00	4.26
3032	3414	6.101650	TGACTATGTGCATCCTAACTATGG	57.898	41.667	0.00	0.00	0.00	2.74
3053	3442	2.616376	GTGTGTGTGTTATTGGTGCTGA	59.384	45.455	0.00	0.00	0.00	4.26
3056	3445	2.098280	TGTGTGTGTGTGTTATTGGTGC	59.902	45.455	0.00	0.00	0.00	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.