Multiple sequence alignment - TraesCS2D01G597000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G597000 chr2D 100.000 3479 0 0 1 3479 649617535 649614057 0.000000e+00 6425.0
1 TraesCS2D01G597000 chr2D 89.867 602 43 13 1684 2275 164280091 164280684 0.000000e+00 758.0
2 TraesCS2D01G597000 chr2B 93.600 2250 65 37 557 2758 785291483 785289265 0.000000e+00 3284.0
3 TraesCS2D01G597000 chr2B 95.087 346 14 2 1930 2275 788845286 788844944 3.050000e-150 542.0
4 TraesCS2D01G597000 chr2B 86.286 350 13 8 3133 3479 785289223 785288906 7.150000e-92 348.0
5 TraesCS2D01G597000 chr2B 95.429 175 8 0 1684 1858 788846914 788846740 2.640000e-71 279.0
6 TraesCS2D01G597000 chr2B 94.382 178 10 0 1684 1861 746164891 746164714 1.230000e-69 274.0
7 TraesCS2D01G597000 chr2B 79.004 281 21 9 254 498 785291938 785291660 1.290000e-34 158.0
8 TraesCS2D01G597000 chr2B 95.556 45 2 0 3072 3116 785289264 785289220 4.820000e-09 73.1
9 TraesCS2D01G597000 chr2B 94.444 36 2 0 1678 1713 746164432 746164397 4.850000e-04 56.5
10 TraesCS2D01G597000 chr2A 94.597 1925 52 20 557 2480 775208491 775210364 0.000000e+00 2931.0
11 TraesCS2D01G597000 chr2A 90.674 193 9 3 3181 3368 775211040 775211228 7.460000e-62 248.0
12 TraesCS2D01G597000 chr2A 86.486 148 17 3 402 546 775207033 775207180 3.590000e-35 159.0
13 TraesCS2D01G597000 chr2A 85.315 143 17 2 1 143 775204728 775204866 1.010000e-30 145.0
14 TraesCS2D01G597000 chr2A 77.826 230 20 12 204 409 775206644 775206866 2.840000e-21 113.0
15 TraesCS2D01G597000 chr2A 89.062 64 3 1 2635 2698 775210527 775210586 3.720000e-10 76.8
16 TraesCS2D01G597000 chr3B 87.687 601 51 17 1687 2275 794285647 794285058 0.000000e+00 678.0
17 TraesCS2D01G597000 chr3B 94.382 178 10 0 1684 1861 487555882 487555705 1.230000e-69 274.0
18 TraesCS2D01G597000 chr3B 93.023 86 6 0 2190 2275 487555595 487555510 3.650000e-25 126.0
19 TraesCS2D01G597000 chr1B 93.878 98 6 0 1684 1781 36276412 36276315 7.780000e-32 148.0
20 TraesCS2D01G597000 chr1B 97.222 36 1 0 2147 2182 36276316 36276281 1.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G597000 chr2D 649614057 649617535 3478 True 6425.000000 6425 100.000000 1 3479 1 chr2D.!!$R1 3478
1 TraesCS2D01G597000 chr2D 164280091 164280684 593 False 758.000000 758 89.867000 1684 2275 1 chr2D.!!$F1 591
2 TraesCS2D01G597000 chr2B 785288906 785291938 3032 True 965.775000 3284 88.611500 254 3479 4 chr2B.!!$R2 3225
3 TraesCS2D01G597000 chr2B 788844944 788846914 1970 True 410.500000 542 95.258000 1684 2275 2 chr2B.!!$R3 591
4 TraesCS2D01G597000 chr2A 775204728 775211228 6500 False 612.133333 2931 87.326667 1 3368 6 chr2A.!!$F1 3367
5 TraesCS2D01G597000 chr3B 794285058 794285647 589 True 678.000000 678 87.687000 1687 2275 1 chr3B.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 2104 0.107017 CATGATTTCACGGAGGCCCT 60.107 55.0 0.0 0.0 0.00 5.19 F
377 2107 0.181350 GATTTCACGGAGGCCCTCAT 59.819 55.0 13.9 0.0 31.08 2.90 F
513 2448 0.598680 GAGATCGCCGTCCTTGGATG 60.599 60.0 2.0 2.0 0.00 3.51 F
1794 5074 0.181587 TCTCCTACTGCCTCCTCTCG 59.818 60.0 0.0 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 4636 1.656587 TCTGGCACTGGTAGTTGGAT 58.343 50.000 0.00 0.0 0.00 3.41 R
1769 5049 1.903183 GGAGGCAGTAGGAGAACTTGT 59.097 52.381 0.00 0.0 0.00 3.16 R
1863 5143 3.006706 GCGTACTGCATCGCCTTC 58.993 61.111 16.41 0.0 45.54 3.46 R
3047 7811 0.034337 GCACCGTCCCTGTGTTTCTA 59.966 55.000 0.00 0.0 36.11 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.546789 CTGGTTAGTTTGTGTTCGTCCC 59.453 50.000 0.00 0.00 0.00 4.46
53 54 5.195001 TCGTCCCTTTTTCTTGATTTTGG 57.805 39.130 0.00 0.00 0.00 3.28
57 58 4.719273 TCCCTTTTTCTTGATTTTGGTGGT 59.281 37.500 0.00 0.00 0.00 4.16
70 71 1.304254 TGGTGGTGTGATTCGTTGTG 58.696 50.000 0.00 0.00 0.00 3.33
76 77 4.271533 GTGGTGTGATTCGTTGTGACTTTA 59.728 41.667 0.00 0.00 0.00 1.85
85 86 6.746745 TTCGTTGTGACTTTAAAGACCTTT 57.253 33.333 21.92 0.00 36.63 3.11
86 87 6.746745 TCGTTGTGACTTTAAAGACCTTTT 57.253 33.333 21.92 0.00 34.23 2.27
114 115 4.270084 TGCGAGTTGTAGAAAGACTTTGTG 59.730 41.667 4.85 0.00 0.00 3.33
121 122 5.607477 TGTAGAAAGACTTTGTGGTTCGAT 58.393 37.500 4.85 0.00 0.00 3.59
122 123 5.465390 TGTAGAAAGACTTTGTGGTTCGATG 59.535 40.000 4.85 0.00 0.00 3.84
133 134 5.707242 TGTGGTTCGATGACCTATATCTC 57.293 43.478 7.76 0.00 40.47 2.75
134 135 4.523173 TGTGGTTCGATGACCTATATCTCC 59.477 45.833 7.76 0.00 40.47 3.71
143 144 3.932562 TGACCTATATCTCCAGGGGATCT 59.067 47.826 4.54 0.00 36.15 2.75
144 145 4.264577 TGACCTATATCTCCAGGGGATCTG 60.265 50.000 4.54 0.00 43.00 2.90
153 154 2.834638 CAGGGGATCTGGTTTTGGAT 57.165 50.000 0.00 0.00 39.76 3.41
154 155 2.381911 CAGGGGATCTGGTTTTGGATG 58.618 52.381 0.00 0.00 39.76 3.51
156 157 1.689258 GGGGATCTGGTTTTGGATGGG 60.689 57.143 0.00 0.00 0.00 4.00
157 158 1.114627 GGATCTGGTTTTGGATGGGC 58.885 55.000 0.00 0.00 0.00 5.36
158 159 0.740737 GATCTGGTTTTGGATGGGCG 59.259 55.000 0.00 0.00 0.00 6.13
159 160 0.331278 ATCTGGTTTTGGATGGGCGA 59.669 50.000 0.00 0.00 0.00 5.54
160 161 0.331278 TCTGGTTTTGGATGGGCGAT 59.669 50.000 0.00 0.00 0.00 4.58
162 163 1.134946 CTGGTTTTGGATGGGCGATTC 59.865 52.381 0.00 0.00 0.00 2.52
165 166 2.417243 GGTTTTGGATGGGCGATTCAAG 60.417 50.000 3.34 0.00 30.69 3.02
166 167 2.491693 GTTTTGGATGGGCGATTCAAGA 59.508 45.455 3.34 0.00 30.69 3.02
167 168 2.042686 TTGGATGGGCGATTCAAGAG 57.957 50.000 0.00 0.00 0.00 2.85
168 169 0.181114 TGGATGGGCGATTCAAGAGG 59.819 55.000 0.00 0.00 0.00 3.69
170 171 1.408822 GGATGGGCGATTCAAGAGGTT 60.409 52.381 0.00 0.00 0.00 3.50
171 172 2.369394 GATGGGCGATTCAAGAGGTTT 58.631 47.619 0.00 0.00 0.00 3.27
172 173 1.821216 TGGGCGATTCAAGAGGTTTC 58.179 50.000 0.00 0.00 0.00 2.78
173 174 1.351017 TGGGCGATTCAAGAGGTTTCT 59.649 47.619 0.00 0.00 34.29 2.52
174 175 2.569853 TGGGCGATTCAAGAGGTTTCTA 59.430 45.455 0.00 0.00 31.96 2.10
176 177 4.007659 GGGCGATTCAAGAGGTTTCTAAA 58.992 43.478 0.00 0.00 31.96 1.85
177 178 4.457949 GGGCGATTCAAGAGGTTTCTAAAA 59.542 41.667 0.00 0.00 31.96 1.52
178 179 5.391449 GGCGATTCAAGAGGTTTCTAAAAC 58.609 41.667 0.00 0.00 31.96 2.43
192 193 8.315391 GGTTTCTAAAACCTATGAAAGTACGT 57.685 34.615 13.14 0.00 37.34 3.57
197 1915 9.013229 TCTAAAACCTATGAAAGTACGTAGTCA 57.987 33.333 2.79 4.78 43.93 3.41
200 1918 9.498176 AAAACCTATGAAAGTACGTAGTCAATT 57.502 29.630 2.79 0.00 43.93 2.32
202 1920 9.798994 AACCTATGAAAGTACGTAGTCAATTAG 57.201 33.333 2.79 4.50 43.93 1.73
211 1929 2.348666 CGTAGTCAATTAGTGCAGGTGC 59.651 50.000 0.00 0.00 42.50 5.01
223 1941 0.378257 GCAGGTGCACGAATGGTATG 59.622 55.000 11.45 0.69 41.59 2.39
224 1942 1.737838 CAGGTGCACGAATGGTATGT 58.262 50.000 11.45 0.00 0.00 2.29
225 1943 2.899976 CAGGTGCACGAATGGTATGTA 58.100 47.619 11.45 0.00 0.00 2.29
226 1944 2.866156 CAGGTGCACGAATGGTATGTAG 59.134 50.000 11.45 0.00 0.00 2.74
228 1946 3.702548 AGGTGCACGAATGGTATGTAGTA 59.297 43.478 11.45 0.00 0.00 1.82
229 1947 4.344102 AGGTGCACGAATGGTATGTAGTAT 59.656 41.667 11.45 0.00 0.00 2.12
230 1948 4.684703 GGTGCACGAATGGTATGTAGTATC 59.315 45.833 11.45 0.00 0.00 2.24
231 1949 4.684703 GTGCACGAATGGTATGTAGTATCC 59.315 45.833 0.00 0.00 0.00 2.59
235 1953 4.021368 ACGAATGGTATGTAGTATCCTGGC 60.021 45.833 0.00 0.00 0.00 4.85
237 1955 5.482908 GAATGGTATGTAGTATCCTGGCTG 58.517 45.833 0.00 0.00 0.00 4.85
250 1968 0.461548 CTGGCTGGATCGAAGTGCTA 59.538 55.000 0.00 0.00 0.00 3.49
251 1969 0.461548 TGGCTGGATCGAAGTGCTAG 59.538 55.000 0.00 0.00 0.00 3.42
252 1970 0.747255 GGCTGGATCGAAGTGCTAGA 59.253 55.000 0.00 0.00 0.00 2.43
294 2012 2.922503 TCACTTCCCGCCTCTGCA 60.923 61.111 0.00 0.00 37.32 4.41
312 2030 4.516698 TCTGCAAATTCTGAAGACAAGGAC 59.483 41.667 0.00 0.00 34.42 3.85
313 2031 3.250762 TGCAAATTCTGAAGACAAGGACG 59.749 43.478 0.00 0.00 0.00 4.79
353 2082 2.520741 CCGGCCACCCTTGTTTGT 60.521 61.111 2.24 0.00 0.00 2.83
366 2096 3.426191 CCTTGTTTGTGCATGATTTCACG 59.574 43.478 0.00 0.00 36.06 4.35
374 2104 0.107017 CATGATTTCACGGAGGCCCT 60.107 55.000 0.00 0.00 0.00 5.19
377 2107 0.181350 GATTTCACGGAGGCCCTCAT 59.819 55.000 13.90 0.00 31.08 2.90
396 2143 4.334552 TCATGGTGTACGTACCTAGTTGA 58.665 43.478 22.43 15.08 41.43 3.18
513 2448 0.598680 GAGATCGCCGTCCTTGGATG 60.599 60.000 2.00 2.00 0.00 3.51
514 2449 2.203070 ATCGCCGTCCTTGGATGC 60.203 61.111 3.43 4.12 0.00 3.91
515 2450 3.757248 ATCGCCGTCCTTGGATGCC 62.757 63.158 3.43 0.00 0.00 4.40
516 2451 4.473520 CGCCGTCCTTGGATGCCT 62.474 66.667 3.43 0.00 0.00 4.75
518 2453 2.115291 GCCGTCCTTGGATGCCTTC 61.115 63.158 3.43 0.00 0.00 3.46
529 2465 1.133945 GGATGCCTTCCTTCCTTCCTC 60.134 57.143 0.00 0.00 41.78 3.71
530 2466 1.561542 GATGCCTTCCTTCCTTCCTCA 59.438 52.381 0.00 0.00 0.00 3.86
543 2479 6.662663 CCTTCCTTCCTCATGAAAAGAAGAAT 59.337 38.462 22.34 0.00 41.55 2.40
546 2482 8.115490 TCCTTCCTCATGAAAAGAAGAATTTC 57.885 34.615 22.34 0.00 38.38 2.17
547 2483 7.946776 TCCTTCCTCATGAAAAGAAGAATTTCT 59.053 33.333 22.34 0.00 45.51 2.52
718 3976 3.179265 CACGACGACGATGGCCAC 61.179 66.667 8.16 0.47 42.66 5.01
719 3977 4.430765 ACGACGACGATGGCCACC 62.431 66.667 8.16 0.00 42.66 4.61
855 4113 2.660064 GCTCCCCACCGTCTGTCAT 61.660 63.158 0.00 0.00 0.00 3.06
856 4114 1.517832 CTCCCCACCGTCTGTCATC 59.482 63.158 0.00 0.00 0.00 2.92
857 4115 0.972983 CTCCCCACCGTCTGTCATCT 60.973 60.000 0.00 0.00 0.00 2.90
1048 4322 2.124778 GCTTGCTCCTCCTCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
1225 4499 4.722700 GCCAAGCCTCCGCCTCAA 62.723 66.667 0.00 0.00 34.57 3.02
1384 4664 1.071987 CAGTGCCAGAACTGCTCCA 59.928 57.895 0.00 0.00 41.05 3.86
1385 4665 0.954449 CAGTGCCAGAACTGCTCCAG 60.954 60.000 0.00 0.00 41.05 3.86
1386 4666 2.033141 TGCCAGAACTGCTCCAGC 59.967 61.111 0.00 0.00 42.50 4.85
1387 4667 3.123620 GCCAGAACTGCTCCAGCG 61.124 66.667 0.00 0.00 45.83 5.18
1388 4668 3.123620 CCAGAACTGCTCCAGCGC 61.124 66.667 0.00 0.00 45.83 5.92
1794 5074 0.181587 TCTCCTACTGCCTCCTCTCG 59.818 60.000 0.00 0.00 0.00 4.04
2211 6918 3.827898 GACCTCCCCGAGCTGTCG 61.828 72.222 0.00 0.00 46.39 4.35
2586 7311 0.898320 TCCAAGAGAGTACAGGCAGC 59.102 55.000 0.00 0.00 0.00 5.25
2608 7333 3.688136 CAATGCATGCTCGCTTGC 58.312 55.556 20.33 19.18 44.24 4.01
2610 7335 0.457853 CAATGCATGCTCGCTTGCTT 60.458 50.000 24.05 17.63 44.28 3.91
2611 7336 1.097232 AATGCATGCTCGCTTGCTTA 58.903 45.000 24.05 10.56 44.28 3.09
2612 7337 0.379669 ATGCATGCTCGCTTGCTTAC 59.620 50.000 24.05 3.24 44.28 2.34
2615 7340 0.247419 CATGCTCGCTTGCTTACGTG 60.247 55.000 0.00 0.00 0.00 4.49
2618 7343 1.417592 CTCGCTTGCTTACGTGCTG 59.582 57.895 0.00 0.00 0.00 4.41
2628 7353 2.279136 GCTTACGTGCTGTACTGAATCG 59.721 50.000 0.00 6.96 31.20 3.34
2694 7439 0.813210 GGCAGCTTTCGGATCCAGAG 60.813 60.000 13.41 7.09 0.00 3.35
2749 7505 9.628746 AATTAGCAATAAATAAAAACGAACGGT 57.371 25.926 0.00 0.00 0.00 4.83
2754 7510 7.534918 GCAATAAATAAAAACGAACGGTACTGT 59.465 33.333 0.04 0.04 0.00 3.55
2758 7514 0.932399 AAACGAACGGTACTGTGTGC 59.068 50.000 8.42 0.39 0.00 4.57
2759 7515 0.179105 AACGAACGGTACTGTGTGCA 60.179 50.000 8.42 0.00 0.00 4.57
2760 7516 0.872881 ACGAACGGTACTGTGTGCAC 60.873 55.000 10.75 10.75 0.00 4.57
2780 7536 2.285857 GCACGCGTGTTTGCTTCAC 61.286 57.895 36.80 15.74 35.74 3.18
2782 7538 1.817941 ACGCGTGTTTGCTTCACCT 60.818 52.632 12.93 0.00 32.86 4.00
2791 7547 3.128589 TGTTTGCTTCACCTCTTGTTCAC 59.871 43.478 0.00 0.00 0.00 3.18
2792 7548 1.967319 TGCTTCACCTCTTGTTCACC 58.033 50.000 0.00 0.00 0.00 4.02
2793 7549 1.239347 GCTTCACCTCTTGTTCACCC 58.761 55.000 0.00 0.00 0.00 4.61
2794 7550 1.897560 CTTCACCTCTTGTTCACCCC 58.102 55.000 0.00 0.00 0.00 4.95
2795 7551 0.107831 TTCACCTCTTGTTCACCCCG 59.892 55.000 0.00 0.00 0.00 5.73
2796 7552 1.302511 CACCTCTTGTTCACCCCGG 60.303 63.158 0.00 0.00 0.00 5.73
2797 7553 2.359975 CCTCTTGTTCACCCCGGC 60.360 66.667 0.00 0.00 0.00 6.13
2799 7555 4.323477 TCTTGTTCACCCCGGCCG 62.323 66.667 21.04 21.04 0.00 6.13
2826 7590 0.554305 ATCCATCCTCCTGCATTGCA 59.446 50.000 11.50 11.50 36.92 4.08
2831 7595 0.323999 TCCTCCTGCATTGCATTGCT 60.324 50.000 28.14 0.00 43.18 3.91
2842 7606 2.176273 GCATTGCTGCTCGATCGGT 61.176 57.895 16.41 0.00 45.32 4.69
2853 7617 4.835927 GATCGGTCGACCATTGCT 57.164 55.556 32.80 12.71 35.14 3.91
2858 7622 1.577328 CGGTCGACCATTGCTTTGCT 61.577 55.000 32.80 0.00 35.14 3.91
2860 7624 1.401539 GGTCGACCATTGCTTTGCTTC 60.402 52.381 29.75 0.00 35.64 3.86
2861 7625 1.537202 GTCGACCATTGCTTTGCTTCT 59.463 47.619 3.51 0.00 0.00 2.85
2863 7627 3.002791 TCGACCATTGCTTTGCTTCTAG 58.997 45.455 0.00 0.00 0.00 2.43
2864 7628 2.096496 CGACCATTGCTTTGCTTCTAGG 59.904 50.000 0.00 0.00 0.00 3.02
2867 7631 2.821969 CCATTGCTTTGCTTCTAGGTGT 59.178 45.455 0.00 0.00 0.00 4.16
2868 7632 3.366679 CCATTGCTTTGCTTCTAGGTGTG 60.367 47.826 0.00 0.00 0.00 3.82
2869 7633 1.896220 TGCTTTGCTTCTAGGTGTGG 58.104 50.000 0.00 0.00 0.00 4.17
2870 7634 0.523519 GCTTTGCTTCTAGGTGTGGC 59.476 55.000 0.00 0.00 0.00 5.01
2874 7638 2.231716 TGCTTCTAGGTGTGGCTAGA 57.768 50.000 0.00 0.00 0.00 2.43
2875 7639 2.752030 TGCTTCTAGGTGTGGCTAGAT 58.248 47.619 0.00 0.00 32.92 1.98
2876 7640 2.695666 TGCTTCTAGGTGTGGCTAGATC 59.304 50.000 0.00 0.00 32.92 2.75
2877 7641 2.962421 GCTTCTAGGTGTGGCTAGATCT 59.038 50.000 0.00 0.00 32.92 2.75
2878 7642 3.243704 GCTTCTAGGTGTGGCTAGATCTG 60.244 52.174 5.18 0.00 32.92 2.90
2879 7643 3.671740 TCTAGGTGTGGCTAGATCTGT 57.328 47.619 5.18 0.00 0.00 3.41
2880 7644 3.291584 TCTAGGTGTGGCTAGATCTGTG 58.708 50.000 5.18 0.00 0.00 3.66
2881 7645 1.198713 AGGTGTGGCTAGATCTGTGG 58.801 55.000 5.18 0.00 0.00 4.17
2882 7646 1.195115 GGTGTGGCTAGATCTGTGGA 58.805 55.000 5.18 0.00 0.00 4.02
2883 7647 1.555075 GGTGTGGCTAGATCTGTGGAA 59.445 52.381 5.18 0.00 0.00 3.53
2884 7648 2.622436 GTGTGGCTAGATCTGTGGAAC 58.378 52.381 5.18 0.00 37.35 3.62
2885 7649 1.555075 TGTGGCTAGATCTGTGGAACC 59.445 52.381 5.18 0.00 34.36 3.62
2886 7650 1.555075 GTGGCTAGATCTGTGGAACCA 59.445 52.381 5.18 0.97 34.36 3.67
2887 7651 2.027192 GTGGCTAGATCTGTGGAACCAA 60.027 50.000 5.18 0.00 34.36 3.67
2888 7652 2.027192 TGGCTAGATCTGTGGAACCAAC 60.027 50.000 5.18 0.00 34.36 3.77
2889 7653 2.271800 GCTAGATCTGTGGAACCAACG 58.728 52.381 5.18 0.00 34.36 4.10
2890 7654 2.271800 CTAGATCTGTGGAACCAACGC 58.728 52.381 5.18 0.00 34.36 4.84
2891 7655 0.687354 AGATCTGTGGAACCAACGCT 59.313 50.000 0.00 0.00 34.36 5.07
2892 7656 1.079503 GATCTGTGGAACCAACGCTC 58.920 55.000 0.00 0.00 34.36 5.03
2893 7657 0.670546 ATCTGTGGAACCAACGCTCG 60.671 55.000 0.00 0.00 34.36 5.03
2894 7658 2.954753 CTGTGGAACCAACGCTCGC 61.955 63.158 0.00 0.00 34.36 5.03
2895 7659 2.665185 GTGGAACCAACGCTCGCT 60.665 61.111 0.00 0.00 0.00 4.93
2896 7660 2.357034 TGGAACCAACGCTCGCTC 60.357 61.111 0.00 0.00 0.00 5.03
2897 7661 2.357034 GGAACCAACGCTCGCTCA 60.357 61.111 0.00 0.00 0.00 4.26
2898 7662 1.959226 GGAACCAACGCTCGCTCAA 60.959 57.895 0.00 0.00 0.00 3.02
2899 7663 1.493311 GAACCAACGCTCGCTCAAG 59.507 57.895 0.00 0.00 0.00 3.02
2900 7664 1.222115 GAACCAACGCTCGCTCAAGT 61.222 55.000 0.00 0.00 0.00 3.16
2901 7665 1.498865 AACCAACGCTCGCTCAAGTG 61.499 55.000 0.00 0.00 0.00 3.16
2902 7666 1.664649 CCAACGCTCGCTCAAGTGA 60.665 57.895 0.00 0.00 0.00 3.41
2903 7667 1.488957 CAACGCTCGCTCAAGTGAC 59.511 57.895 0.00 0.00 0.00 3.67
2904 7668 1.067416 AACGCTCGCTCAAGTGACA 59.933 52.632 0.00 0.00 0.00 3.58
2905 7669 0.941463 AACGCTCGCTCAAGTGACAG 60.941 55.000 0.00 0.00 0.00 3.51
2906 7670 1.081175 CGCTCGCTCAAGTGACAGA 60.081 57.895 0.00 0.00 0.00 3.41
2907 7671 0.664466 CGCTCGCTCAAGTGACAGAA 60.664 55.000 0.00 0.00 0.00 3.02
2908 7672 1.719600 GCTCGCTCAAGTGACAGAAT 58.280 50.000 0.00 0.00 0.00 2.40
2909 7673 2.732282 CGCTCGCTCAAGTGACAGAATA 60.732 50.000 0.00 0.00 0.00 1.75
2910 7674 3.452474 GCTCGCTCAAGTGACAGAATAT 58.548 45.455 0.00 0.00 0.00 1.28
2911 7675 4.611943 GCTCGCTCAAGTGACAGAATATA 58.388 43.478 0.00 0.00 0.00 0.86
2912 7676 4.442733 GCTCGCTCAAGTGACAGAATATAC 59.557 45.833 0.00 0.00 0.00 1.47
2913 7677 5.576447 TCGCTCAAGTGACAGAATATACA 57.424 39.130 0.00 0.00 0.00 2.29
2914 7678 5.961272 TCGCTCAAGTGACAGAATATACAA 58.039 37.500 0.00 0.00 0.00 2.41
2915 7679 6.394809 TCGCTCAAGTGACAGAATATACAAA 58.605 36.000 0.00 0.00 0.00 2.83
2916 7680 6.871492 TCGCTCAAGTGACAGAATATACAAAA 59.129 34.615 0.00 0.00 0.00 2.44
2917 7681 7.386573 TCGCTCAAGTGACAGAATATACAAAAA 59.613 33.333 0.00 0.00 0.00 1.94
2952 7716 9.582431 TGAAACCAAAACATTAAATTTACACGA 57.418 25.926 0.00 0.00 0.00 4.35
2956 7720 9.974980 ACCAAAACATTAAATTTACACGAATCT 57.025 25.926 0.00 0.00 0.00 2.40
2961 7725 8.874745 ACATTAAATTTACACGAATCTTCACG 57.125 30.769 0.00 0.00 0.00 4.35
2962 7726 8.500773 ACATTAAATTTACACGAATCTTCACGT 58.499 29.630 0.00 0.00 43.50 4.49
2963 7727 9.961266 CATTAAATTTACACGAATCTTCACGTA 57.039 29.630 0.00 0.00 40.76 3.57
2975 7739 4.492791 TCTTCACGTAAGATGTCGTCAA 57.507 40.909 0.00 0.00 39.36 3.18
2976 7740 5.055642 TCTTCACGTAAGATGTCGTCAAT 57.944 39.130 0.00 0.00 39.36 2.57
2977 7741 6.185852 TCTTCACGTAAGATGTCGTCAATA 57.814 37.500 0.00 0.00 39.36 1.90
2978 7742 6.792326 TCTTCACGTAAGATGTCGTCAATAT 58.208 36.000 0.00 0.00 39.36 1.28
2979 7743 7.922837 TCTTCACGTAAGATGTCGTCAATATA 58.077 34.615 0.00 0.00 39.36 0.86
2980 7744 8.068380 TCTTCACGTAAGATGTCGTCAATATAG 58.932 37.037 0.00 0.00 39.36 1.31
2981 7745 6.665465 TCACGTAAGATGTCGTCAATATAGG 58.335 40.000 0.00 0.00 38.23 2.57
2982 7746 5.856986 CACGTAAGATGTCGTCAATATAGGG 59.143 44.000 0.00 0.00 38.23 3.53
2983 7747 5.533903 ACGTAAGATGTCGTCAATATAGGGT 59.466 40.000 0.00 0.00 43.62 4.34
2984 7748 6.084925 CGTAAGATGTCGTCAATATAGGGTC 58.915 44.000 0.00 0.00 43.02 4.46
2985 7749 6.072618 CGTAAGATGTCGTCAATATAGGGTCT 60.073 42.308 0.00 0.00 43.02 3.85
2986 7750 7.118825 CGTAAGATGTCGTCAATATAGGGTCTA 59.881 40.741 0.00 0.00 43.02 2.59
2987 7751 7.455641 AAGATGTCGTCAATATAGGGTCTAG 57.544 40.000 0.00 0.00 0.00 2.43
2988 7752 6.544650 AGATGTCGTCAATATAGGGTCTAGT 58.455 40.000 0.00 0.00 0.00 2.57
2989 7753 6.655848 AGATGTCGTCAATATAGGGTCTAGTC 59.344 42.308 0.00 0.00 0.00 2.59
2990 7754 4.753610 TGTCGTCAATATAGGGTCTAGTCG 59.246 45.833 0.00 0.00 0.00 4.18
2991 7755 4.993584 GTCGTCAATATAGGGTCTAGTCGA 59.006 45.833 0.00 0.00 0.00 4.20
2992 7756 4.993584 TCGTCAATATAGGGTCTAGTCGAC 59.006 45.833 7.70 7.70 42.07 4.20
2993 7757 4.996122 CGTCAATATAGGGTCTAGTCGACT 59.004 45.833 23.66 23.66 42.44 4.18
2994 7758 5.107026 CGTCAATATAGGGTCTAGTCGACTG 60.107 48.000 28.12 17.05 42.44 3.51
2995 7759 5.996513 GTCAATATAGGGTCTAGTCGACTGA 59.003 44.000 28.12 18.99 42.44 3.41
2996 7760 6.655848 GTCAATATAGGGTCTAGTCGACTGAT 59.344 42.308 28.12 10.65 42.44 2.90
2997 7761 7.823310 GTCAATATAGGGTCTAGTCGACTGATA 59.177 40.741 28.12 10.13 42.44 2.15
2998 7762 8.549731 TCAATATAGGGTCTAGTCGACTGATAT 58.450 37.037 28.12 17.20 42.44 1.63
2999 7763 9.179909 CAATATAGGGTCTAGTCGACTGATATT 57.820 37.037 28.12 18.15 42.44 1.28
3000 7764 9.756571 AATATAGGGTCTAGTCGACTGATATTT 57.243 33.333 28.12 11.72 42.44 1.40
3002 7766 8.795842 ATAGGGTCTAGTCGACTGATATTTAG 57.204 38.462 28.12 15.02 42.44 1.85
3003 7767 5.474189 AGGGTCTAGTCGACTGATATTTAGC 59.526 44.000 28.12 13.11 42.44 3.09
3004 7768 5.383958 GGTCTAGTCGACTGATATTTAGCG 58.616 45.833 28.12 3.66 42.44 4.26
3005 7769 5.178996 GGTCTAGTCGACTGATATTTAGCGA 59.821 44.000 28.12 2.07 42.44 4.93
3006 7770 6.128227 GGTCTAGTCGACTGATATTTAGCGAT 60.128 42.308 28.12 0.00 42.44 4.58
3007 7771 6.957077 GTCTAGTCGACTGATATTTAGCGATC 59.043 42.308 28.12 3.83 39.61 3.69
3008 7772 5.049398 AGTCGACTGATATTTAGCGATCC 57.951 43.478 19.30 0.00 0.00 3.36
3009 7773 4.082679 AGTCGACTGATATTTAGCGATCCC 60.083 45.833 19.30 0.00 0.00 3.85
3010 7774 3.192844 TCGACTGATATTTAGCGATCCCC 59.807 47.826 0.00 0.00 0.00 4.81
3011 7775 3.193691 CGACTGATATTTAGCGATCCCCT 59.806 47.826 0.00 0.00 0.00 4.79
3012 7776 4.322049 CGACTGATATTTAGCGATCCCCTT 60.322 45.833 0.00 0.00 0.00 3.95
3013 7777 5.552178 GACTGATATTTAGCGATCCCCTTT 58.448 41.667 0.00 0.00 0.00 3.11
3014 7778 5.308825 ACTGATATTTAGCGATCCCCTTTG 58.691 41.667 0.00 0.00 0.00 2.77
3015 7779 4.072131 TGATATTTAGCGATCCCCTTTGC 58.928 43.478 0.00 0.00 0.00 3.68
3016 7780 2.736670 ATTTAGCGATCCCCTTTGCT 57.263 45.000 0.00 0.00 39.67 3.91
3017 7781 2.507407 TTTAGCGATCCCCTTTGCTT 57.493 45.000 0.00 0.00 37.52 3.91
3018 7782 2.507407 TTAGCGATCCCCTTTGCTTT 57.493 45.000 0.00 0.00 37.52 3.51
3019 7783 2.038387 TAGCGATCCCCTTTGCTTTC 57.962 50.000 0.00 0.00 37.52 2.62
3020 7784 0.329596 AGCGATCCCCTTTGCTTTCT 59.670 50.000 0.00 0.00 32.17 2.52
3021 7785 1.177401 GCGATCCCCTTTGCTTTCTT 58.823 50.000 0.00 0.00 0.00 2.52
3022 7786 1.546029 GCGATCCCCTTTGCTTTCTTT 59.454 47.619 0.00 0.00 0.00 2.52
3023 7787 2.416027 GCGATCCCCTTTGCTTTCTTTC 60.416 50.000 0.00 0.00 0.00 2.62
3024 7788 3.084786 CGATCCCCTTTGCTTTCTTTCT 58.915 45.455 0.00 0.00 0.00 2.52
3030 7794 3.507622 CCCTTTGCTTTCTTTCTAGGTGG 59.492 47.826 0.00 0.00 0.00 4.61
3043 7807 5.407407 TTCTAGGTGGAAGAAAGTAGCAG 57.593 43.478 0.00 0.00 30.15 4.24
3044 7808 3.769844 TCTAGGTGGAAGAAAGTAGCAGG 59.230 47.826 0.00 0.00 0.00 4.85
3047 7811 2.239907 GGTGGAAGAAAGTAGCAGGGAT 59.760 50.000 0.00 0.00 0.00 3.85
3048 7812 3.454812 GGTGGAAGAAAGTAGCAGGGATA 59.545 47.826 0.00 0.00 0.00 2.59
3050 7814 4.406003 GTGGAAGAAAGTAGCAGGGATAGA 59.594 45.833 0.00 0.00 0.00 1.98
3051 7815 5.030147 TGGAAGAAAGTAGCAGGGATAGAA 58.970 41.667 0.00 0.00 0.00 2.10
3052 7816 5.487488 TGGAAGAAAGTAGCAGGGATAGAAA 59.513 40.000 0.00 0.00 0.00 2.52
3053 7817 5.818336 GGAAGAAAGTAGCAGGGATAGAAAC 59.182 44.000 0.00 0.00 0.00 2.78
3054 7818 6.374417 AAGAAAGTAGCAGGGATAGAAACA 57.626 37.500 0.00 0.00 0.00 2.83
3055 7819 5.735766 AGAAAGTAGCAGGGATAGAAACAC 58.264 41.667 0.00 0.00 0.00 3.32
3056 7820 5.248477 AGAAAGTAGCAGGGATAGAAACACA 59.752 40.000 0.00 0.00 0.00 3.72
3057 7821 4.744795 AGTAGCAGGGATAGAAACACAG 57.255 45.455 0.00 0.00 0.00 3.66
3058 7822 3.452627 AGTAGCAGGGATAGAAACACAGG 59.547 47.826 0.00 0.00 0.00 4.00
3059 7823 1.561542 AGCAGGGATAGAAACACAGGG 59.438 52.381 0.00 0.00 0.00 4.45
3060 7824 1.559682 GCAGGGATAGAAACACAGGGA 59.440 52.381 0.00 0.00 0.00 4.20
3061 7825 2.681097 GCAGGGATAGAAACACAGGGAC 60.681 54.545 0.00 0.00 0.00 4.46
3062 7826 1.831736 AGGGATAGAAACACAGGGACG 59.168 52.381 0.00 0.00 0.00 4.79
3063 7827 1.134491 GGGATAGAAACACAGGGACGG 60.134 57.143 0.00 0.00 0.00 4.79
3064 7828 1.553704 GGATAGAAACACAGGGACGGT 59.446 52.381 0.00 0.00 37.10 4.83
3071 7835 3.483587 ACAGGGACGGTGCTCAAT 58.516 55.556 0.00 0.00 33.98 2.57
3072 7836 1.296715 ACAGGGACGGTGCTCAATC 59.703 57.895 0.00 0.00 33.98 2.67
3073 7837 1.194781 ACAGGGACGGTGCTCAATCT 61.195 55.000 0.00 0.00 33.98 2.40
3074 7838 0.742281 CAGGGACGGTGCTCAATCTG 60.742 60.000 0.00 0.00 0.00 2.90
3081 7845 1.267806 CGGTGCTCAATCTGCTTTTGT 59.732 47.619 0.00 0.00 0.00 2.83
3117 7881 2.860009 AGATGGATCGATTTGCATGCT 58.140 42.857 20.33 0.00 0.00 3.79
3118 7882 3.220110 AGATGGATCGATTTGCATGCTT 58.780 40.909 20.33 3.46 0.00 3.91
3120 7884 3.153676 TGGATCGATTTGCATGCTTTG 57.846 42.857 20.33 7.90 0.00 2.77
3121 7885 2.159212 TGGATCGATTTGCATGCTTTGG 60.159 45.455 20.33 5.10 0.00 3.28
3122 7886 2.466846 GATCGATTTGCATGCTTTGGG 58.533 47.619 20.33 5.79 0.00 4.12
3186 8092 7.221450 AGTTAATCAAGCTTGTACTGTTGGTA 58.779 34.615 25.19 2.96 0.00 3.25
3228 8134 2.484889 GGAATGTCCGTGGAGCTAATC 58.515 52.381 0.00 0.00 0.00 1.75
3246 8157 6.807708 CTAATCAAGCTTTGTCGTACGTAT 57.192 37.500 16.05 0.00 0.00 3.06
3272 8186 3.158676 TGGTTGCTGGGTGTTTAATACC 58.841 45.455 2.05 2.05 37.48 2.73
3282 8196 5.425196 GGTGTTTAATACCCTCACCTACA 57.575 43.478 0.00 0.00 43.34 2.74
3300 8214 5.665812 ACCTACAAGAATTAGATGCCCTGTA 59.334 40.000 0.00 0.00 0.00 2.74
3301 8215 5.992217 CCTACAAGAATTAGATGCCCTGTAC 59.008 44.000 0.00 0.00 0.00 2.90
3302 8216 4.442706 ACAAGAATTAGATGCCCTGTACG 58.557 43.478 0.00 0.00 0.00 3.67
3303 8217 4.081087 ACAAGAATTAGATGCCCTGTACGT 60.081 41.667 0.00 0.00 0.00 3.57
3420 8334 2.046507 GCTGCTACCTGCTGTGCT 60.047 61.111 0.00 0.00 43.37 4.40
3421 8335 2.396955 GCTGCTACCTGCTGTGCTG 61.397 63.158 0.00 0.00 43.37 4.41
3422 8336 2.359107 TGCTACCTGCTGTGCTGC 60.359 61.111 0.00 0.00 43.37 5.25
3423 8337 3.130160 GCTACCTGCTGTGCTGCC 61.130 66.667 0.00 0.00 38.95 4.85
3424 8338 2.816958 CTACCTGCTGTGCTGCCG 60.817 66.667 0.00 0.00 0.00 5.69
3431 8345 3.782244 CTGTGCTGCCGCTCGTTC 61.782 66.667 0.70 0.00 36.97 3.95
3432 8346 4.600576 TGTGCTGCCGCTCGTTCA 62.601 61.111 0.70 0.00 36.97 3.18
3433 8347 3.345808 GTGCTGCCGCTCGTTCAA 61.346 61.111 0.70 0.00 36.97 2.69
3466 8380 0.883370 CTCCTTATTTACGGCCCGCC 60.883 60.000 1.23 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.105333 TCACACCACCAAAATCAAGAAAAAG 58.895 36.000 0.00 0.00 0.00 2.27
53 54 2.210116 AGTCACAACGAATCACACCAC 58.790 47.619 0.00 0.00 0.00 4.16
57 58 6.238266 GGTCTTTAAAGTCACAACGAATCACA 60.238 38.462 14.74 0.00 0.00 3.58
89 90 5.353123 ACAAAGTCTTTCTACAACTCGCAAA 59.647 36.000 0.00 0.00 0.00 3.68
90 91 4.873827 ACAAAGTCTTTCTACAACTCGCAA 59.126 37.500 0.00 0.00 0.00 4.85
91 92 4.270084 CACAAAGTCTTTCTACAACTCGCA 59.730 41.667 0.00 0.00 0.00 5.10
92 93 4.318831 CCACAAAGTCTTTCTACAACTCGC 60.319 45.833 0.00 0.00 0.00 5.03
93 94 4.809426 ACCACAAAGTCTTTCTACAACTCG 59.191 41.667 0.00 0.00 0.00 4.18
94 95 6.509677 CGAACCACAAAGTCTTTCTACAACTC 60.510 42.308 0.00 0.00 0.00 3.01
95 96 5.293569 CGAACCACAAAGTCTTTCTACAACT 59.706 40.000 0.00 0.00 0.00 3.16
96 97 5.292589 TCGAACCACAAAGTCTTTCTACAAC 59.707 40.000 0.00 0.00 0.00 3.32
97 98 5.421277 TCGAACCACAAAGTCTTTCTACAA 58.579 37.500 0.00 0.00 0.00 2.41
98 99 5.013568 TCGAACCACAAAGTCTTTCTACA 57.986 39.130 0.00 0.00 0.00 2.74
99 100 5.694910 TCATCGAACCACAAAGTCTTTCTAC 59.305 40.000 0.00 0.00 0.00 2.59
100 101 5.694910 GTCATCGAACCACAAAGTCTTTCTA 59.305 40.000 0.00 0.00 0.00 2.10
101 102 4.511826 GTCATCGAACCACAAAGTCTTTCT 59.488 41.667 0.00 0.00 0.00 2.52
108 109 6.516718 AGATATAGGTCATCGAACCACAAAG 58.483 40.000 8.93 0.00 42.12 2.77
114 115 4.158764 CCTGGAGATATAGGTCATCGAACC 59.841 50.000 0.00 0.00 39.80 3.62
121 122 3.932562 AGATCCCCTGGAGATATAGGTCA 59.067 47.826 0.00 0.00 34.05 4.02
122 123 4.285863 CAGATCCCCTGGAGATATAGGTC 58.714 52.174 0.00 0.00 39.23 3.85
134 135 2.381911 CATCCAAAACCAGATCCCCTG 58.618 52.381 0.00 0.00 42.55 4.45
143 144 1.181786 GAATCGCCCATCCAAAACCA 58.818 50.000 0.00 0.00 0.00 3.67
144 145 1.181786 TGAATCGCCCATCCAAAACC 58.818 50.000 0.00 0.00 0.00 3.27
145 146 2.491693 TCTTGAATCGCCCATCCAAAAC 59.508 45.455 0.00 0.00 0.00 2.43
146 147 2.754552 CTCTTGAATCGCCCATCCAAAA 59.245 45.455 0.00 0.00 0.00 2.44
148 149 1.408683 CCTCTTGAATCGCCCATCCAA 60.409 52.381 0.00 0.00 0.00 3.53
149 150 0.181114 CCTCTTGAATCGCCCATCCA 59.819 55.000 0.00 0.00 0.00 3.41
150 151 0.181350 ACCTCTTGAATCGCCCATCC 59.819 55.000 0.00 0.00 0.00 3.51
151 152 2.044123 AACCTCTTGAATCGCCCATC 57.956 50.000 0.00 0.00 0.00 3.51
152 153 2.025887 AGAAACCTCTTGAATCGCCCAT 60.026 45.455 0.00 0.00 0.00 4.00
153 154 1.351017 AGAAACCTCTTGAATCGCCCA 59.649 47.619 0.00 0.00 0.00 5.36
154 155 2.115343 AGAAACCTCTTGAATCGCCC 57.885 50.000 0.00 0.00 0.00 6.13
156 157 5.391449 GGTTTTAGAAACCTCTTGAATCGC 58.609 41.667 13.83 0.00 37.34 4.58
167 168 8.315391 ACGTACTTTCATAGGTTTTAGAAACC 57.685 34.615 13.36 13.36 40.58 3.27
170 171 9.846248 GACTACGTACTTTCATAGGTTTTAGAA 57.154 33.333 0.00 0.00 0.00 2.10
171 172 9.013229 TGACTACGTACTTTCATAGGTTTTAGA 57.987 33.333 0.00 0.00 0.00 2.10
172 173 9.630098 TTGACTACGTACTTTCATAGGTTTTAG 57.370 33.333 0.00 0.00 0.00 1.85
174 175 9.498176 AATTGACTACGTACTTTCATAGGTTTT 57.502 29.630 0.00 0.00 0.00 2.43
176 177 9.798994 CTAATTGACTACGTACTTTCATAGGTT 57.201 33.333 0.00 0.00 0.00 3.50
177 178 8.964772 ACTAATTGACTACGTACTTTCATAGGT 58.035 33.333 0.00 0.00 0.00 3.08
178 179 9.234384 CACTAATTGACTACGTACTTTCATAGG 57.766 37.037 0.00 0.00 0.00 2.57
180 181 8.245491 TGCACTAATTGACTACGTACTTTCATA 58.755 33.333 0.00 0.00 0.00 2.15
182 183 6.448852 TGCACTAATTGACTACGTACTTTCA 58.551 36.000 0.00 0.00 0.00 2.69
183 184 6.034683 CCTGCACTAATTGACTACGTACTTTC 59.965 42.308 0.00 0.00 0.00 2.62
184 185 5.867716 CCTGCACTAATTGACTACGTACTTT 59.132 40.000 0.00 0.00 0.00 2.66
185 186 5.047519 ACCTGCACTAATTGACTACGTACTT 60.048 40.000 0.00 0.00 0.00 2.24
186 187 4.461781 ACCTGCACTAATTGACTACGTACT 59.538 41.667 0.00 0.00 0.00 2.73
188 189 4.740268 CACCTGCACTAATTGACTACGTA 58.260 43.478 0.00 0.00 0.00 3.57
189 190 3.585862 CACCTGCACTAATTGACTACGT 58.414 45.455 0.00 0.00 0.00 3.57
230 1948 1.817099 GCACTTCGATCCAGCCAGG 60.817 63.158 0.00 0.00 39.47 4.45
231 1949 0.461548 TAGCACTTCGATCCAGCCAG 59.538 55.000 0.00 0.00 0.00 4.85
269 1987 2.296190 GAGGCGGGAAGTGACAATTTTT 59.704 45.455 0.00 0.00 0.00 1.94
294 2012 2.814336 GCCGTCCTTGTCTTCAGAATTT 59.186 45.455 0.00 0.00 0.00 1.82
312 2030 2.274437 CGAATCCATATCCAGATGCCG 58.726 52.381 0.00 0.00 0.00 5.69
313 2031 2.636830 CCGAATCCATATCCAGATGCC 58.363 52.381 0.00 0.00 0.00 4.40
353 2082 1.031571 GGCCTCCGTGAAATCATGCA 61.032 55.000 0.00 0.00 0.00 3.96
366 2096 1.527370 GTACACCATGAGGGCCTCC 59.473 63.158 30.03 13.12 42.05 4.30
374 2104 4.334552 TCAACTAGGTACGTACACCATGA 58.665 43.478 26.02 18.58 41.40 3.07
377 2107 3.084039 CCTCAACTAGGTACGTACACCA 58.916 50.000 26.02 10.03 41.40 4.17
396 2143 2.041301 TACCTACCATGCCCGCCT 60.041 61.111 0.00 0.00 0.00 5.52
477 2398 1.626654 CTCATGCGTGTGAACGGGAC 61.627 60.000 5.68 0.00 0.00 4.46
513 2448 1.561542 TCATGAGGAAGGAAGGAAGGC 59.438 52.381 0.00 0.00 0.00 4.35
514 2449 4.307032 TTTCATGAGGAAGGAAGGAAGG 57.693 45.455 0.00 0.00 36.72 3.46
515 2450 5.564550 TCTTTTCATGAGGAAGGAAGGAAG 58.435 41.667 16.37 3.25 36.72 3.46
516 2451 5.582950 TCTTTTCATGAGGAAGGAAGGAA 57.417 39.130 16.37 0.00 36.72 3.36
518 2453 5.564550 TCTTCTTTTCATGAGGAAGGAAGG 58.435 41.667 22.15 10.86 41.78 3.46
543 2479 2.940410 GTGTTGACGTCCAGGAAAGAAA 59.060 45.455 14.12 0.00 0.00 2.52
546 2482 1.867233 CAGTGTTGACGTCCAGGAAAG 59.133 52.381 14.12 0.00 0.00 2.62
547 2483 1.948104 CAGTGTTGACGTCCAGGAAA 58.052 50.000 14.12 0.00 0.00 3.13
549 2485 1.069090 GCAGTGTTGACGTCCAGGA 59.931 57.895 14.12 0.00 0.00 3.86
551 2487 2.310233 CCGCAGTGTTGACGTCCAG 61.310 63.158 14.12 0.00 0.00 3.86
552 2488 2.279851 CCGCAGTGTTGACGTCCA 60.280 61.111 14.12 0.00 0.00 4.02
553 2489 2.022129 CTCCGCAGTGTTGACGTCC 61.022 63.158 14.12 0.00 0.00 4.79
555 2491 2.661866 GCTCCGCAGTGTTGACGT 60.662 61.111 0.00 0.00 0.00 4.34
855 4113 1.669927 GGGAGGGAGGGAGGATGAGA 61.670 65.000 0.00 0.00 0.00 3.27
856 4114 1.152139 GGGAGGGAGGGAGGATGAG 60.152 68.421 0.00 0.00 0.00 2.90
857 4115 1.630333 AGGGAGGGAGGGAGGATGA 60.630 63.158 0.00 0.00 0.00 2.92
1048 4322 2.896443 GAGGAGAGGGGCGACAAG 59.104 66.667 0.00 0.00 0.00 3.16
1356 4636 1.656587 TCTGGCACTGGTAGTTGGAT 58.343 50.000 0.00 0.00 0.00 3.41
1769 5049 1.903183 GGAGGCAGTAGGAGAACTTGT 59.097 52.381 0.00 0.00 0.00 3.16
1863 5143 3.006706 GCGTACTGCATCGCCTTC 58.993 61.111 16.41 0.00 45.54 3.46
2571 7293 0.829333 CATGGCTGCCTGTACTCTCT 59.171 55.000 21.03 0.00 0.00 3.10
2592 7317 1.097232 TAAGCAAGCGAGCATGCATT 58.903 45.000 23.98 17.19 42.32 3.56
2593 7318 0.379669 GTAAGCAAGCGAGCATGCAT 59.620 50.000 23.98 16.30 42.32 3.96
2594 7319 1.796151 GTAAGCAAGCGAGCATGCA 59.204 52.632 23.98 4.83 42.32 3.96
2595 7320 1.297158 CGTAAGCAAGCGAGCATGC 60.297 57.895 16.26 16.26 40.47 4.06
2596 7321 0.247419 CACGTAAGCAAGCGAGCATG 60.247 55.000 6.21 0.00 45.62 4.06
2597 7322 1.970917 GCACGTAAGCAAGCGAGCAT 61.971 55.000 6.21 0.00 42.48 3.79
2598 7323 2.667318 GCACGTAAGCAAGCGAGCA 61.667 57.895 6.21 0.00 42.48 4.26
2599 7324 2.096594 GCACGTAAGCAAGCGAGC 59.903 61.111 0.00 1.33 45.62 5.03
2600 7325 1.284982 ACAGCACGTAAGCAAGCGAG 61.285 55.000 0.36 0.00 45.62 5.03
2602 7327 0.093026 GTACAGCACGTAAGCAAGCG 59.907 55.000 0.36 0.00 45.62 4.68
2603 7328 1.126846 CAGTACAGCACGTAAGCAAGC 59.873 52.381 0.36 0.00 45.62 4.01
2604 7329 2.672714 TCAGTACAGCACGTAAGCAAG 58.327 47.619 0.36 0.00 45.62 4.01
2606 7331 2.804697 TTCAGTACAGCACGTAAGCA 57.195 45.000 0.36 0.00 45.62 3.91
2607 7332 2.279136 CGATTCAGTACAGCACGTAAGC 59.721 50.000 0.00 0.00 45.62 3.09
2610 7335 3.835378 TTCGATTCAGTACAGCACGTA 57.165 42.857 0.00 0.00 0.00 3.57
2611 7336 2.717580 TTCGATTCAGTACAGCACGT 57.282 45.000 0.00 0.00 0.00 4.49
2612 7337 2.535984 GGATTCGATTCAGTACAGCACG 59.464 50.000 9.36 0.00 0.00 5.34
2615 7340 3.553511 CACTGGATTCGATTCAGTACAGC 59.446 47.826 13.10 0.00 39.43 4.40
2618 7343 4.386867 TCCACTGGATTCGATTCAGTAC 57.613 45.455 13.10 0.00 39.43 2.73
2628 7353 5.763204 TGTCACTAACTTTTCCACTGGATTC 59.237 40.000 0.00 0.00 0.00 2.52
2694 7439 1.069227 CAAATCTAATAAGCGCGGGGC 60.069 52.381 8.83 9.26 44.05 5.80
2741 7497 0.872881 GTGCACACAGTACCGTTCGT 60.873 55.000 13.17 0.00 0.00 3.85
2758 7514 2.918163 AAGCAAACACGCGTGCAGTG 62.918 55.000 37.35 30.12 43.42 3.66
2759 7515 2.646799 GAAGCAAACACGCGTGCAGT 62.647 55.000 37.35 21.06 43.42 4.40
2760 7516 2.005537 GAAGCAAACACGCGTGCAG 61.006 57.895 37.35 26.80 43.42 4.41
2780 7536 2.359975 GCCGGGGTGAACAAGAGG 60.360 66.667 2.18 0.00 0.00 3.69
2782 7538 4.323477 CGGCCGGGGTGAACAAGA 62.323 66.667 20.10 0.00 0.00 3.02
2796 7552 4.688966 GATGGATCCTCGCCCGGC 62.689 72.222 14.23 0.00 0.00 6.13
2797 7553 4.008933 GGATGGATCCTCGCCCGG 62.009 72.222 14.23 0.00 43.73 5.73
2819 7583 0.248907 ATCGAGCAGCAATGCAATGC 60.249 50.000 19.23 19.23 46.78 3.56
2820 7584 1.755161 GATCGAGCAGCAATGCAATG 58.245 50.000 8.35 0.00 37.25 2.82
2821 7585 0.306840 CGATCGAGCAGCAATGCAAT 59.693 50.000 10.26 0.00 37.25 3.56
2822 7586 1.708193 CCGATCGAGCAGCAATGCAA 61.708 55.000 18.66 0.00 37.25 4.08
2826 7590 4.427394 GACCGATCGAGCAGCAAT 57.573 55.556 18.66 0.00 0.00 3.56
2839 7603 1.154225 GCAAAGCAATGGTCGACCG 60.154 57.895 28.70 16.22 39.43 4.79
2842 7606 1.896220 AGAAGCAAAGCAATGGTCGA 58.104 45.000 0.00 0.00 0.00 4.20
2845 7609 2.821969 CACCTAGAAGCAAAGCAATGGT 59.178 45.455 0.00 0.00 0.00 3.55
2848 7612 2.821969 CCACACCTAGAAGCAAAGCAAT 59.178 45.455 0.00 0.00 0.00 3.56
2853 7617 2.903784 TCTAGCCACACCTAGAAGCAAA 59.096 45.455 0.00 0.00 40.49 3.68
2858 7622 3.701542 CACAGATCTAGCCACACCTAGAA 59.298 47.826 0.00 0.00 44.92 2.10
2860 7624 2.363680 CCACAGATCTAGCCACACCTAG 59.636 54.545 0.00 0.00 36.88 3.02
2861 7625 2.024369 TCCACAGATCTAGCCACACCTA 60.024 50.000 0.00 0.00 0.00 3.08
2863 7627 1.195115 TCCACAGATCTAGCCACACC 58.805 55.000 0.00 0.00 0.00 4.16
2864 7628 2.622436 GTTCCACAGATCTAGCCACAC 58.378 52.381 0.00 0.00 0.00 3.82
2867 7631 1.951209 TGGTTCCACAGATCTAGCCA 58.049 50.000 0.00 0.00 0.00 4.75
2868 7632 2.633488 GTTGGTTCCACAGATCTAGCC 58.367 52.381 0.00 0.00 0.00 3.93
2869 7633 2.271800 CGTTGGTTCCACAGATCTAGC 58.728 52.381 0.00 0.00 0.00 3.42
2870 7634 2.093973 AGCGTTGGTTCCACAGATCTAG 60.094 50.000 0.00 0.00 0.00 2.43
2874 7638 0.670546 CGAGCGTTGGTTCCACAGAT 60.671 55.000 0.00 0.00 0.00 2.90
2875 7639 1.300620 CGAGCGTTGGTTCCACAGA 60.301 57.895 0.00 0.00 0.00 3.41
2876 7640 2.954753 GCGAGCGTTGGTTCCACAG 61.955 63.158 0.00 0.00 0.00 3.66
2877 7641 2.970324 GCGAGCGTTGGTTCCACA 60.970 61.111 0.00 0.00 0.00 4.17
2878 7642 2.665185 AGCGAGCGTTGGTTCCAC 60.665 61.111 0.00 0.00 0.00 4.02
2879 7643 2.357034 GAGCGAGCGTTGGTTCCA 60.357 61.111 0.00 0.00 0.00 3.53
2880 7644 1.901650 CTTGAGCGAGCGTTGGTTCC 61.902 60.000 0.00 0.00 0.00 3.62
2881 7645 1.222115 ACTTGAGCGAGCGTTGGTTC 61.222 55.000 0.00 0.00 0.00 3.62
2882 7646 1.227556 ACTTGAGCGAGCGTTGGTT 60.228 52.632 0.00 0.00 0.00 3.67
2883 7647 1.956170 CACTTGAGCGAGCGTTGGT 60.956 57.895 0.00 0.00 0.00 3.67
2884 7648 1.664649 TCACTTGAGCGAGCGTTGG 60.665 57.895 0.00 0.00 0.00 3.77
2885 7649 1.215014 TGTCACTTGAGCGAGCGTTG 61.215 55.000 0.00 0.00 0.00 4.10
2886 7650 0.941463 CTGTCACTTGAGCGAGCGTT 60.941 55.000 0.00 0.00 0.00 4.84
2887 7651 1.372251 CTGTCACTTGAGCGAGCGT 60.372 57.895 0.00 0.00 0.00 5.07
2888 7652 0.664466 TTCTGTCACTTGAGCGAGCG 60.664 55.000 0.00 0.00 0.00 5.03
2889 7653 1.719600 ATTCTGTCACTTGAGCGAGC 58.280 50.000 0.00 0.00 0.00 5.03
2890 7654 5.582550 TGTATATTCTGTCACTTGAGCGAG 58.417 41.667 0.00 0.00 0.00 5.03
2891 7655 5.576447 TGTATATTCTGTCACTTGAGCGA 57.424 39.130 0.00 0.00 0.00 4.93
2892 7656 6.647212 TTTGTATATTCTGTCACTTGAGCG 57.353 37.500 0.00 0.00 0.00 5.03
2926 7690 9.582431 TCGTGTAAATTTAATGTTTTGGTTTCA 57.418 25.926 0.00 0.00 0.00 2.69
2930 7694 9.974980 AGATTCGTGTAAATTTAATGTTTTGGT 57.025 25.926 0.00 0.00 0.00 3.67
2935 7699 9.325150 CGTGAAGATTCGTGTAAATTTAATGTT 57.675 29.630 0.00 0.00 0.00 2.71
2936 7700 8.500773 ACGTGAAGATTCGTGTAAATTTAATGT 58.499 29.630 0.00 0.00 38.85 2.71
2937 7701 8.874745 ACGTGAAGATTCGTGTAAATTTAATG 57.125 30.769 0.00 0.00 38.85 1.90
2940 7704 9.409312 TCTTACGTGAAGATTCGTGTAAATTTA 57.591 29.630 0.00 0.00 39.36 1.40
2941 7705 8.301730 TCTTACGTGAAGATTCGTGTAAATTT 57.698 30.769 0.00 0.00 39.36 1.82
2942 7706 7.878477 TCTTACGTGAAGATTCGTGTAAATT 57.122 32.000 0.00 0.00 39.36 1.82
2955 7719 7.323895 CCTATATTGACGACATCTTACGTGAAG 59.676 40.741 0.00 0.00 42.74 3.02
2956 7720 7.136772 CCTATATTGACGACATCTTACGTGAA 58.863 38.462 0.00 0.00 42.74 3.18
2957 7721 6.293790 CCCTATATTGACGACATCTTACGTGA 60.294 42.308 0.00 0.00 42.74 4.35
2958 7722 5.856986 CCCTATATTGACGACATCTTACGTG 59.143 44.000 0.00 0.00 42.74 4.49
2959 7723 5.533903 ACCCTATATTGACGACATCTTACGT 59.466 40.000 0.00 0.00 45.32 3.57
2960 7724 6.010294 ACCCTATATTGACGACATCTTACG 57.990 41.667 0.00 0.00 0.00 3.18
2961 7725 7.216973 AGACCCTATATTGACGACATCTTAC 57.783 40.000 0.00 0.00 0.00 2.34
2962 7726 8.162085 ACTAGACCCTATATTGACGACATCTTA 58.838 37.037 0.00 0.00 0.00 2.10
2963 7727 7.005296 ACTAGACCCTATATTGACGACATCTT 58.995 38.462 0.00 0.00 0.00 2.40
2964 7728 6.544650 ACTAGACCCTATATTGACGACATCT 58.455 40.000 0.00 0.00 0.00 2.90
2965 7729 6.402334 CGACTAGACCCTATATTGACGACATC 60.402 46.154 0.00 0.00 0.00 3.06
2966 7730 5.411977 CGACTAGACCCTATATTGACGACAT 59.588 44.000 0.00 0.00 0.00 3.06
2967 7731 4.753610 CGACTAGACCCTATATTGACGACA 59.246 45.833 0.00 0.00 0.00 4.35
2968 7732 4.993584 TCGACTAGACCCTATATTGACGAC 59.006 45.833 0.00 0.00 0.00 4.34
2969 7733 4.993584 GTCGACTAGACCCTATATTGACGA 59.006 45.833 8.70 0.00 43.95 4.20
2970 7734 5.280328 GTCGACTAGACCCTATATTGACG 57.720 47.826 8.70 0.00 43.95 4.35
2983 7747 6.092396 GGATCGCTAAATATCAGTCGACTAGA 59.908 42.308 19.57 17.66 0.00 2.43
2984 7748 6.252281 GGATCGCTAAATATCAGTCGACTAG 58.748 44.000 19.57 11.28 0.00 2.57
2985 7749 5.123502 GGGATCGCTAAATATCAGTCGACTA 59.876 44.000 19.57 2.81 0.00 2.59
2986 7750 4.082679 GGGATCGCTAAATATCAGTCGACT 60.083 45.833 13.58 13.58 0.00 4.18
2987 7751 4.167268 GGGATCGCTAAATATCAGTCGAC 58.833 47.826 7.70 7.70 0.00 4.20
2988 7752 3.192844 GGGGATCGCTAAATATCAGTCGA 59.807 47.826 9.90 0.00 0.00 4.20
2989 7753 3.193691 AGGGGATCGCTAAATATCAGTCG 59.806 47.826 9.90 0.00 0.00 4.18
2990 7754 4.810191 AGGGGATCGCTAAATATCAGTC 57.190 45.455 9.90 0.00 0.00 3.51
2991 7755 5.308825 CAAAGGGGATCGCTAAATATCAGT 58.691 41.667 9.90 0.00 0.00 3.41
2992 7756 4.154918 GCAAAGGGGATCGCTAAATATCAG 59.845 45.833 9.90 0.00 0.00 2.90
2993 7757 4.072131 GCAAAGGGGATCGCTAAATATCA 58.928 43.478 9.90 0.00 0.00 2.15
2994 7758 4.327680 AGCAAAGGGGATCGCTAAATATC 58.672 43.478 9.90 0.00 31.60 1.63
2995 7759 4.373156 AGCAAAGGGGATCGCTAAATAT 57.627 40.909 9.90 0.00 31.60 1.28
2996 7760 3.857157 AGCAAAGGGGATCGCTAAATA 57.143 42.857 9.90 0.00 31.60 1.40
2997 7761 2.736670 AGCAAAGGGGATCGCTAAAT 57.263 45.000 9.90 0.00 31.60 1.40
2998 7762 2.507407 AAGCAAAGGGGATCGCTAAA 57.493 45.000 9.90 0.00 33.45 1.85
2999 7763 2.026262 AGAAAGCAAAGGGGATCGCTAA 60.026 45.455 9.90 0.00 33.45 3.09
3000 7764 1.559682 AGAAAGCAAAGGGGATCGCTA 59.440 47.619 9.90 0.00 33.45 4.26
3001 7765 0.329596 AGAAAGCAAAGGGGATCGCT 59.670 50.000 9.90 0.00 35.90 4.93
3002 7766 1.177401 AAGAAAGCAAAGGGGATCGC 58.823 50.000 0.06 0.06 0.00 4.58
3003 7767 3.084786 AGAAAGAAAGCAAAGGGGATCG 58.915 45.455 0.00 0.00 0.00 3.69
3004 7768 4.642437 CCTAGAAAGAAAGCAAAGGGGATC 59.358 45.833 0.00 0.00 0.00 3.36
3005 7769 4.044698 ACCTAGAAAGAAAGCAAAGGGGAT 59.955 41.667 0.00 0.00 0.00 3.85
3006 7770 3.397955 ACCTAGAAAGAAAGCAAAGGGGA 59.602 43.478 0.00 0.00 0.00 4.81
3007 7771 3.507622 CACCTAGAAAGAAAGCAAAGGGG 59.492 47.826 0.00 0.00 0.00 4.79
3008 7772 3.507622 CCACCTAGAAAGAAAGCAAAGGG 59.492 47.826 0.00 0.00 0.00 3.95
3009 7773 4.398319 TCCACCTAGAAAGAAAGCAAAGG 58.602 43.478 0.00 0.00 0.00 3.11
3010 7774 5.765182 TCTTCCACCTAGAAAGAAAGCAAAG 59.235 40.000 0.00 0.00 0.00 2.77
3011 7775 5.690865 TCTTCCACCTAGAAAGAAAGCAAA 58.309 37.500 0.00 0.00 0.00 3.68
3012 7776 5.304686 TCTTCCACCTAGAAAGAAAGCAA 57.695 39.130 0.00 0.00 0.00 3.91
3013 7777 4.974645 TCTTCCACCTAGAAAGAAAGCA 57.025 40.909 0.00 0.00 0.00 3.91
3020 7784 5.280011 CCTGCTACTTTCTTCCACCTAGAAA 60.280 44.000 0.00 0.00 38.82 2.52
3021 7785 4.223032 CCTGCTACTTTCTTCCACCTAGAA 59.777 45.833 0.00 0.00 0.00 2.10
3022 7786 3.769844 CCTGCTACTTTCTTCCACCTAGA 59.230 47.826 0.00 0.00 0.00 2.43
3023 7787 3.118592 CCCTGCTACTTTCTTCCACCTAG 60.119 52.174 0.00 0.00 0.00 3.02
3024 7788 2.838202 CCCTGCTACTTTCTTCCACCTA 59.162 50.000 0.00 0.00 0.00 3.08
3030 7794 6.314152 GTGTTTCTATCCCTGCTACTTTCTTC 59.686 42.308 0.00 0.00 0.00 2.87
3038 7802 2.771943 CCCTGTGTTTCTATCCCTGCTA 59.228 50.000 0.00 0.00 0.00 3.49
3040 7804 1.559682 TCCCTGTGTTTCTATCCCTGC 59.440 52.381 0.00 0.00 0.00 4.85
3041 7805 2.418746 CGTCCCTGTGTTTCTATCCCTG 60.419 54.545 0.00 0.00 0.00 4.45
3043 7807 1.134491 CCGTCCCTGTGTTTCTATCCC 60.134 57.143 0.00 0.00 0.00 3.85
3044 7808 1.553704 ACCGTCCCTGTGTTTCTATCC 59.446 52.381 0.00 0.00 0.00 2.59
3047 7811 0.034337 GCACCGTCCCTGTGTTTCTA 59.966 55.000 0.00 0.00 36.11 2.10
3048 7812 1.227853 GCACCGTCCCTGTGTTTCT 60.228 57.895 0.00 0.00 36.11 2.52
3050 7814 1.227853 GAGCACCGTCCCTGTGTTT 60.228 57.895 0.00 0.00 36.11 2.83
3051 7815 1.978455 TTGAGCACCGTCCCTGTGTT 61.978 55.000 0.00 0.00 36.11 3.32
3052 7816 1.768684 ATTGAGCACCGTCCCTGTGT 61.769 55.000 0.00 0.00 36.11 3.72
3053 7817 1.003355 ATTGAGCACCGTCCCTGTG 60.003 57.895 0.00 0.00 36.79 3.66
3054 7818 1.194781 AGATTGAGCACCGTCCCTGT 61.195 55.000 0.00 0.00 0.00 4.00
3055 7819 0.742281 CAGATTGAGCACCGTCCCTG 60.742 60.000 0.00 0.00 0.00 4.45
3056 7820 1.599047 CAGATTGAGCACCGTCCCT 59.401 57.895 0.00 0.00 0.00 4.20
3057 7821 2.109126 GCAGATTGAGCACCGTCCC 61.109 63.158 0.00 0.00 0.00 4.46
3058 7822 0.674895 AAGCAGATTGAGCACCGTCC 60.675 55.000 0.00 0.00 0.00 4.79
3059 7823 1.160137 AAAGCAGATTGAGCACCGTC 58.840 50.000 0.00 0.00 0.00 4.79
3060 7824 1.267806 CAAAAGCAGATTGAGCACCGT 59.732 47.619 0.00 0.00 0.00 4.83
3061 7825 1.267806 ACAAAAGCAGATTGAGCACCG 59.732 47.619 3.55 0.00 0.00 4.94
3062 7826 3.005155 AGAACAAAAGCAGATTGAGCACC 59.995 43.478 3.55 0.00 0.00 5.01
3063 7827 4.234530 AGAACAAAAGCAGATTGAGCAC 57.765 40.909 3.55 0.00 0.00 4.40
3064 7828 4.924305 AAGAACAAAAGCAGATTGAGCA 57.076 36.364 3.55 0.00 0.00 4.26
3065 7829 5.557703 GCAAAAGAACAAAAGCAGATTGAGC 60.558 40.000 3.55 0.00 0.00 4.26
3066 7830 5.751990 AGCAAAAGAACAAAAGCAGATTGAG 59.248 36.000 3.55 0.00 0.00 3.02
3067 7831 5.663456 AGCAAAAGAACAAAAGCAGATTGA 58.337 33.333 3.55 0.00 0.00 2.57
3068 7832 5.978934 AGCAAAAGAACAAAAGCAGATTG 57.021 34.783 0.00 0.00 0.00 2.67
3069 7833 6.237915 CGAAAGCAAAAGAACAAAAGCAGATT 60.238 34.615 0.00 0.00 0.00 2.40
3070 7834 5.232838 CGAAAGCAAAAGAACAAAAGCAGAT 59.767 36.000 0.00 0.00 0.00 2.90
3071 7835 4.562394 CGAAAGCAAAAGAACAAAAGCAGA 59.438 37.500 0.00 0.00 0.00 4.26
3072 7836 4.259930 CCGAAAGCAAAAGAACAAAAGCAG 60.260 41.667 0.00 0.00 0.00 4.24
3073 7837 3.616379 CCGAAAGCAAAAGAACAAAAGCA 59.384 39.130 0.00 0.00 0.00 3.91
3074 7838 3.616821 ACCGAAAGCAAAAGAACAAAAGC 59.383 39.130 0.00 0.00 0.00 3.51
3081 7845 4.647611 TCCATCTACCGAAAGCAAAAGAA 58.352 39.130 0.00 0.00 0.00 2.52
3117 7881 0.749649 ACATGTTCGCTTTGCCCAAA 59.250 45.000 0.00 0.00 0.00 3.28
3118 7882 0.313672 GACATGTTCGCTTTGCCCAA 59.686 50.000 0.00 0.00 0.00 4.12
3120 7884 0.527565 ATGACATGTTCGCTTTGCCC 59.472 50.000 0.00 0.00 0.00 5.36
3121 7885 1.791555 CGATGACATGTTCGCTTTGCC 60.792 52.381 6.98 0.00 0.00 4.52
3122 7886 1.135972 ACGATGACATGTTCGCTTTGC 60.136 47.619 17.61 0.00 38.91 3.68
3124 7888 2.805671 TCAACGATGACATGTTCGCTTT 59.194 40.909 17.61 5.21 38.91 3.51
3125 7889 2.412870 TCAACGATGACATGTTCGCTT 58.587 42.857 17.61 9.78 38.91 4.68
3126 7890 2.078849 TCAACGATGACATGTTCGCT 57.921 45.000 17.61 5.09 38.91 4.93
3127 7891 2.697363 CATCAACGATGACATGTTCGC 58.303 47.619 17.61 0.00 42.09 4.70
3129 7893 4.346734 AAGCATCAACGATGACATGTTC 57.653 40.909 8.14 0.00 42.09 3.18
3130 7894 4.669965 CGAAAGCATCAACGATGACATGTT 60.670 41.667 8.14 0.00 42.09 2.71
3131 7895 3.181517 CGAAAGCATCAACGATGACATGT 60.182 43.478 0.00 0.00 42.09 3.21
3132 7896 3.181517 ACGAAAGCATCAACGATGACATG 60.182 43.478 8.14 0.00 42.09 3.21
3133 7897 3.002791 ACGAAAGCATCAACGATGACAT 58.997 40.909 8.14 0.00 42.09 3.06
3186 8092 2.224066 GCCCATGACGCATCTACTAACT 60.224 50.000 0.00 0.00 0.00 2.24
3223 8129 6.344002 CGATACGTACGACAAAGCTTGATTAG 60.344 42.308 24.41 0.00 0.00 1.73
3228 8134 2.912967 ACGATACGTACGACAAAGCTTG 59.087 45.455 24.41 4.04 38.73 4.01
3245 8156 0.467290 ACACCCAGCAACCAAACGAT 60.467 50.000 0.00 0.00 0.00 3.73
3246 8157 0.681564 AACACCCAGCAACCAAACGA 60.682 50.000 0.00 0.00 0.00 3.85
3272 8186 5.059833 GGCATCTAATTCTTGTAGGTGAGG 58.940 45.833 0.00 0.00 32.33 3.86
3282 8196 4.442706 CACGTACAGGGCATCTAATTCTT 58.557 43.478 0.00 0.00 0.00 2.52
3320 8234 3.380479 CATCACATGCCCATTCATTCC 57.620 47.619 0.00 0.00 0.00 3.01
3368 8282 2.367202 ATGGGTCAGGGTACGCCTG 61.367 63.158 19.09 19.09 36.71 4.85
3369 8283 2.040606 ATGGGTCAGGGTACGCCT 59.959 61.111 6.27 1.52 34.45 5.52
3370 8284 2.189521 CATGGGTCAGGGTACGCC 59.810 66.667 6.27 0.00 0.00 5.68
3371 8285 2.513897 GCATGGGTCAGGGTACGC 60.514 66.667 0.77 0.77 0.00 4.42
3372 8286 0.815213 CATGCATGGGTCAGGGTACG 60.815 60.000 19.40 0.00 0.00 3.67
3373 8287 0.466189 CCATGCATGGGTCAGGGTAC 60.466 60.000 34.31 0.00 44.31 3.34
3374 8288 1.922057 CCATGCATGGGTCAGGGTA 59.078 57.895 34.31 0.00 44.31 3.69
3396 8310 2.590007 CAGGTAGCAGCCGCCATC 60.590 66.667 5.72 0.00 39.83 3.51
3420 8334 0.447406 CATTGATTGAACGAGCGGCA 59.553 50.000 1.45 0.00 0.00 5.69
3421 8335 0.447801 ACATTGATTGAACGAGCGGC 59.552 50.000 0.00 0.00 0.00 6.53
3422 8336 1.791555 GCACATTGATTGAACGAGCGG 60.792 52.381 0.00 0.00 0.00 5.52
3423 8337 1.136000 TGCACATTGATTGAACGAGCG 60.136 47.619 0.00 0.00 0.00 5.03
3424 8338 2.245096 GTGCACATTGATTGAACGAGC 58.755 47.619 13.17 0.00 0.00 5.03
3425 8339 3.485633 CTGTGCACATTGATTGAACGAG 58.514 45.455 22.00 0.00 0.00 4.18
3426 8340 2.350676 GCTGTGCACATTGATTGAACGA 60.351 45.455 22.00 0.00 0.00 3.85
3427 8341 1.980844 GCTGTGCACATTGATTGAACG 59.019 47.619 22.00 5.47 0.00 3.95
3428 8342 3.240069 GAGCTGTGCACATTGATTGAAC 58.760 45.455 22.00 1.74 0.00 3.18
3429 8343 2.229543 GGAGCTGTGCACATTGATTGAA 59.770 45.455 22.00 0.00 0.00 2.69
3430 8344 1.814394 GGAGCTGTGCACATTGATTGA 59.186 47.619 22.00 0.00 0.00 2.57
3431 8345 1.816835 AGGAGCTGTGCACATTGATTG 59.183 47.619 22.00 8.67 0.00 2.67
3432 8346 2.211250 AGGAGCTGTGCACATTGATT 57.789 45.000 22.00 4.18 0.00 2.57
3433 8347 2.211250 AAGGAGCTGTGCACATTGAT 57.789 45.000 22.00 8.50 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.