Multiple sequence alignment - TraesCS2D01G596400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G596400 chr2D 100.000 2633 0 0 1 2633 649387910 649390542 0.000000e+00 4863.0
1 TraesCS2D01G596400 chr2D 91.310 840 49 17 987 1820 649377312 649376491 0.000000e+00 1125.0
2 TraesCS2D01G596400 chr2D 85.622 466 42 12 211 654 394352792 394353254 1.430000e-127 466.0
3 TraesCS2D01G596400 chr2D 84.599 474 47 14 212 663 181608583 181608114 5.170000e-122 448.0
4 TraesCS2D01G596400 chr2B 87.457 1738 135 43 15 1685 785237615 785239336 0.000000e+00 1925.0
5 TraesCS2D01G596400 chr2B 86.364 1078 77 40 987 2057 785230203 785229189 0.000000e+00 1112.0
6 TraesCS2D01G596400 chr2B 85.039 127 15 2 707 829 785230733 785230607 2.750000e-25 126.0
7 TraesCS2D01G596400 chr2B 94.286 70 4 0 1992 2061 785239539 785239608 9.970000e-20 108.0
8 TraesCS2D01G596400 chr2A 89.006 1046 73 27 684 1710 775309306 775308284 0.000000e+00 1256.0
9 TraesCS2D01G596400 chr2A 85.833 1087 86 45 987 2061 775358627 775359657 0.000000e+00 1092.0
10 TraesCS2D01G596400 chr2A 74.517 259 39 19 2117 2367 775359770 775360009 1.300000e-13 87.9
11 TraesCS2D01G596400 chr2A 91.935 62 1 2 2023 2084 775308120 775308063 1.680000e-12 84.2
12 TraesCS2D01G596400 chr3D 85.466 461 44 14 213 654 463113693 463114149 2.390000e-125 459.0
13 TraesCS2D01G596400 chr3D 82.392 301 31 7 373 654 295662348 295662645 2.620000e-60 243.0
14 TraesCS2D01G596400 chr3D 92.143 140 11 0 2395 2534 376169106 376168967 5.750000e-47 198.0
15 TraesCS2D01G596400 chr3D 91.549 142 12 0 2393 2534 11570629 11570770 2.070000e-46 196.0
16 TraesCS2D01G596400 chr1B 84.167 480 48 12 212 668 620125240 620125714 8.650000e-120 440.0
17 TraesCS2D01G596400 chr5D 84.052 464 45 13 214 654 455822617 455822160 1.130000e-113 420.0
18 TraesCS2D01G596400 chr5D 85.714 399 45 5 210 601 50504973 50504580 6.780000e-111 411.0
19 TraesCS2D01G596400 chr6D 83.766 462 45 17 212 646 460793709 460794167 6.780000e-111 411.0
20 TraesCS2D01G596400 chr6A 85.316 395 45 5 212 599 60161995 60161607 1.900000e-106 396.0
21 TraesCS2D01G596400 chr6A 89.116 147 15 1 2389 2534 513761087 513761233 5.790000e-42 182.0
22 TraesCS2D01G596400 chr6B 81.799 467 56 16 208 654 410685393 410684936 5.360000e-97 364.0
23 TraesCS2D01G596400 chr6B 80.514 467 61 17 208 654 410238175 410237719 5.430000e-87 331.0
24 TraesCS2D01G596400 chr7D 77.711 498 68 19 180 654 401850358 401849881 5.590000e-67 265.0
25 TraesCS2D01G596400 chr7D 92.857 140 9 1 2395 2534 599694788 599694650 4.440000e-48 202.0
26 TraesCS2D01G596400 chr5A 91.275 149 11 2 2387 2534 674077645 674077498 4.440000e-48 202.0
27 TraesCS2D01G596400 chr5A 90.845 142 13 0 2393 2534 502826424 502826283 9.620000e-45 191.0
28 TraesCS2D01G596400 chr5A 89.583 144 14 1 2391 2534 267938607 267938749 5.790000e-42 182.0
29 TraesCS2D01G596400 chr1A 92.143 140 11 0 2395 2534 513203890 513204029 5.750000e-47 198.0
30 TraesCS2D01G596400 chr4B 90.345 145 8 3 2391 2534 52583030 52583169 4.480000e-43 185.0
31 TraesCS2D01G596400 chr7A 87.805 123 13 2 420 541 435865676 435865797 2.730000e-30 143.0
32 TraesCS2D01G596400 chr7B 94.737 38 2 0 617 654 380836767 380836804 2.830000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G596400 chr2D 649387910 649390542 2632 False 4863.00 4863 100.0000 1 2633 1 chr2D.!!$F2 2632
1 TraesCS2D01G596400 chr2D 649376491 649377312 821 True 1125.00 1125 91.3100 987 1820 1 chr2D.!!$R2 833
2 TraesCS2D01G596400 chr2B 785237615 785239608 1993 False 1016.50 1925 90.8715 15 2061 2 chr2B.!!$F1 2046
3 TraesCS2D01G596400 chr2B 785229189 785230733 1544 True 619.00 1112 85.7015 707 2057 2 chr2B.!!$R1 1350
4 TraesCS2D01G596400 chr2A 775308063 775309306 1243 True 670.10 1256 90.4705 684 2084 2 chr2A.!!$R1 1400
5 TraesCS2D01G596400 chr2A 775358627 775360009 1382 False 589.95 1092 80.1750 987 2367 2 chr2A.!!$F1 1380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
741 766 0.034896 AACTCACCGCGATTCACCTT 59.965 50.0 8.23 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 2933 0.037326 TTGGCCTGAAGCACGAGTAG 60.037 55.0 3.32 0.0 46.5 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.338984 AGCCTTCCACGTCGTGTC 59.661 61.111 23.01 7.49 0.00 3.67
19 20 2.732016 CCTTCCACGTCGTGTCCA 59.268 61.111 23.01 4.83 0.00 4.02
32 33 4.192000 GTCCACAGACAGATGCGG 57.808 61.111 0.00 0.00 42.99 5.69
107 109 4.815973 ATAGCCCCGGCCACCAGA 62.816 66.667 2.24 0.00 43.17 3.86
120 122 1.918293 ACCAGATTGACCAGGGCGA 60.918 57.895 0.00 0.00 0.00 5.54
129 131 3.535962 CCAGGGCGAGAGAGGAGC 61.536 72.222 0.00 0.00 0.00 4.70
145 147 1.076412 AGCGCATCTCCTCCTCTCA 60.076 57.895 11.47 0.00 0.00 3.27
151 153 1.380403 ATCTCCTCCTCTCACACGCG 61.380 60.000 3.53 3.53 0.00 6.01
152 154 3.057547 CTCCTCCTCTCACACGCGG 62.058 68.421 12.47 1.27 0.00 6.46
175 177 4.559063 CCAGGAGATGGGGCTGCG 62.559 72.222 0.00 0.00 46.36 5.18
203 206 2.162681 CCGCACCTTCTCAAATTTCCT 58.837 47.619 0.00 0.00 0.00 3.36
205 208 3.366374 CCGCACCTTCTCAAATTTCCTTC 60.366 47.826 0.00 0.00 0.00 3.46
216 220 0.879090 ATTTCCTTCCAAACGGACGC 59.121 50.000 0.00 0.00 30.04 5.19
224 228 1.082756 CAAACGGACGCAGCTTCAC 60.083 57.895 0.69 0.00 0.00 3.18
250 254 5.230942 ACTTTATGAAGTCAAGTCTCACCG 58.769 41.667 0.00 0.00 42.35 4.94
253 257 4.866508 ATGAAGTCAAGTCTCACCGTAA 57.133 40.909 0.00 0.00 0.00 3.18
279 283 4.275936 CCCTTTATCAGCCGTCCATTAAAG 59.724 45.833 0.00 0.00 0.00 1.85
286 290 1.865340 GCCGTCCATTAAAGATCCGAC 59.135 52.381 0.00 0.00 0.00 4.79
287 291 2.740580 GCCGTCCATTAAAGATCCGACA 60.741 50.000 0.00 0.00 0.00 4.35
398 403 8.528044 TTTGTATTATGGGATAGTTTCAACCC 57.472 34.615 0.00 0.00 42.37 4.11
404 409 4.093011 TGGGATAGTTTCAACCCATTTGG 58.907 43.478 0.00 0.00 46.04 3.28
430 435 8.766994 ATGTATGGTTTGTGATTAAATAGCCT 57.233 30.769 0.00 0.00 0.00 4.58
439 444 7.466746 TGTGATTAAATAGCCTTTTGAGCTT 57.533 32.000 0.00 0.00 41.83 3.74
441 446 9.019656 TGTGATTAAATAGCCTTTTGAGCTTAA 57.980 29.630 0.00 0.00 41.83 1.85
483 488 2.783284 CGCAAACGATACATCCAAATGC 59.217 45.455 0.00 0.00 43.93 3.56
487 492 5.291614 GCAAACGATACATCCAAATGCATTT 59.708 36.000 18.99 18.99 36.26 2.32
517 523 8.918961 TTCACAGAATACAAAACGAAACATTT 57.081 26.923 0.00 0.00 0.00 2.32
614 634 1.751563 GTCAGGCTGATAGAGGGGC 59.248 63.158 21.84 0.67 0.00 5.80
625 645 3.117398 TGATAGAGGGGCCTAAGTTACGA 60.117 47.826 0.84 0.00 0.00 3.43
654 674 4.025040 TGGCTTCATGAAGTCACTGAAT 57.975 40.909 33.38 0.00 46.83 2.57
655 675 5.164620 TGGCTTCATGAAGTCACTGAATA 57.835 39.130 33.38 13.44 46.83 1.75
667 688 0.325296 ACTGAATAGCGTCCCCTCCA 60.325 55.000 0.00 0.00 0.00 3.86
668 689 0.830648 CTGAATAGCGTCCCCTCCAA 59.169 55.000 0.00 0.00 0.00 3.53
718 739 2.393646 TCCTTCCAACCCAAAACCTTG 58.606 47.619 0.00 0.00 0.00 3.61
724 745 2.006169 CAACCCAAAACCTTGCACAAC 58.994 47.619 0.00 0.00 0.00 3.32
741 766 0.034896 AACTCACCGCGATTCACCTT 59.965 50.000 8.23 0.00 0.00 3.50
864 1229 3.097614 CCAGTCCCCTACTTATATCCCG 58.902 54.545 0.00 0.00 35.76 5.14
865 1230 2.496470 CAGTCCCCTACTTATATCCCGC 59.504 54.545 0.00 0.00 35.76 6.13
871 1236 1.203994 CTACTTATATCCCGCCCACCG 59.796 57.143 0.00 0.00 0.00 4.94
900 1265 2.322658 GCAATCCACCATCCAATCCAT 58.677 47.619 0.00 0.00 0.00 3.41
954 1334 3.400054 CCTCCCTCCCGTCCAACC 61.400 72.222 0.00 0.00 0.00 3.77
981 1361 4.892965 ACCGGCACCAGCAGCAAA 62.893 61.111 0.00 0.00 44.61 3.68
985 1365 2.732094 GCACCAGCAGCAAAAGCG 60.732 61.111 0.00 0.00 41.58 4.68
1107 1496 2.751913 CGTCTCCCTCCTCGTCACG 61.752 68.421 0.00 0.00 0.00 4.35
1425 1814 2.693864 CAGGTGCTGGAGGGGGAT 60.694 66.667 0.00 0.00 0.00 3.85
1428 1817 2.616458 GGTGCTGGAGGGGGATGTT 61.616 63.158 0.00 0.00 0.00 2.71
1496 1885 1.294659 GAGGTGAAGCTCAACGCCAG 61.295 60.000 16.48 0.00 39.55 4.85
1667 2102 4.169461 ACCATTGGGGAATCTGATCTGATT 59.831 41.667 23.29 23.29 41.15 2.57
1685 2130 5.049060 TCTGATTCCTTCTCTCGATTCGATC 60.049 44.000 9.54 1.64 34.61 3.69
1695 2141 3.897819 GATTCGATCGGTTGGTTGC 57.102 52.632 16.41 0.00 0.00 4.17
1696 2142 0.026285 GATTCGATCGGTTGGTTGCG 59.974 55.000 16.41 0.00 0.00 4.85
1697 2143 1.366111 ATTCGATCGGTTGGTTGCGG 61.366 55.000 16.41 0.00 0.00 5.69
1698 2144 3.496131 CGATCGGTTGGTTGCGGG 61.496 66.667 7.38 0.00 0.00 6.13
1699 2145 2.046700 GATCGGTTGGTTGCGGGA 60.047 61.111 0.00 0.00 0.00 5.14
1700 2146 1.451387 GATCGGTTGGTTGCGGGAT 60.451 57.895 0.00 0.00 0.00 3.85
1701 2147 1.436983 GATCGGTTGGTTGCGGGATC 61.437 60.000 0.00 0.00 0.00 3.36
1702 2148 2.886730 ATCGGTTGGTTGCGGGATCC 62.887 60.000 1.92 1.92 0.00 3.36
1703 2149 2.355115 GGTTGGTTGCGGGATCCT 59.645 61.111 12.58 0.00 0.00 3.24
1704 2150 1.304134 GGTTGGTTGCGGGATCCTT 60.304 57.895 12.58 0.00 0.00 3.36
1705 2151 0.898326 GGTTGGTTGCGGGATCCTTT 60.898 55.000 12.58 0.00 0.00 3.11
1706 2152 0.526211 GTTGGTTGCGGGATCCTTTC 59.474 55.000 12.58 1.60 0.00 2.62
1707 2153 0.404040 TTGGTTGCGGGATCCTTTCT 59.596 50.000 12.58 0.00 0.00 2.52
1708 2154 0.035439 TGGTTGCGGGATCCTTTCTC 60.035 55.000 12.58 0.16 0.00 2.87
1709 2155 0.253327 GGTTGCGGGATCCTTTCTCT 59.747 55.000 12.58 0.00 0.00 3.10
1710 2156 1.657822 GTTGCGGGATCCTTTCTCTC 58.342 55.000 12.58 0.00 0.00 3.20
1711 2157 0.175760 TTGCGGGATCCTTTCTCTCG 59.824 55.000 12.58 5.81 0.00 4.04
1712 2158 0.683179 TGCGGGATCCTTTCTCTCGA 60.683 55.000 12.58 0.00 0.00 4.04
1713 2159 0.676736 GCGGGATCCTTTCTCTCGAT 59.323 55.000 12.58 0.00 0.00 3.59
1714 2160 1.069358 GCGGGATCCTTTCTCTCGATT 59.931 52.381 12.58 0.00 0.00 3.34
1715 2161 2.864489 GCGGGATCCTTTCTCTCGATTC 60.864 54.545 12.58 0.00 0.00 2.52
1716 2162 2.625790 CGGGATCCTTTCTCTCGATTCT 59.374 50.000 12.58 0.00 0.00 2.40
1717 2163 3.068873 CGGGATCCTTTCTCTCGATTCTT 59.931 47.826 12.58 0.00 0.00 2.52
1718 2164 4.627058 GGGATCCTTTCTCTCGATTCTTC 58.373 47.826 12.58 0.00 0.00 2.87
1719 2165 4.295051 GGATCCTTTCTCTCGATTCTTCG 58.705 47.826 3.84 0.00 46.87 3.79
1736 2182 4.069304 TCTTCGATTCGATTGGTTGGTTT 58.931 39.130 9.96 0.00 35.23 3.27
1846 2305 6.062434 AGTACTAGTCGCATTGTTAGCTAG 57.938 41.667 0.00 0.00 34.00 3.42
1847 2306 4.985538 ACTAGTCGCATTGTTAGCTAGT 57.014 40.909 0.00 0.00 35.65 2.57
1848 2307 6.765036 AGTACTAGTCGCATTGTTAGCTAGTA 59.235 38.462 0.00 0.00 39.53 1.82
1849 2308 6.062434 ACTAGTCGCATTGTTAGCTAGTAG 57.938 41.667 0.00 0.00 37.81 2.57
1850 2309 3.707793 AGTCGCATTGTTAGCTAGTAGC 58.292 45.455 14.62 14.62 42.84 3.58
1872 2331 9.613957 GTAGCTACTATATGCACATATTATCGG 57.386 37.037 16.88 0.00 35.71 4.18
1895 2354 2.478031 CGGTGGTAGAGATCACTCGTTG 60.478 54.545 0.00 0.00 46.64 4.10
1924 2383 7.600065 TGGTTCTTTGTTAGCAGTAGTACTAG 58.400 38.462 1.87 0.00 0.00 2.57
1926 2385 6.829229 TCTTTGTTAGCAGTAGTACTAGCA 57.171 37.500 19.92 5.95 0.00 3.49
1930 2389 1.777941 AGCAGTAGTACTAGCACCCC 58.222 55.000 19.92 0.00 0.00 4.95
1931 2390 0.751452 GCAGTAGTACTAGCACCCCC 59.249 60.000 1.87 0.00 0.00 5.40
1952 2411 7.196637 CCCCCATATATTACTCCCTTAGTTC 57.803 44.000 0.00 0.00 39.80 3.01
1953 2412 6.966461 CCCCCATATATTACTCCCTTAGTTCT 59.034 42.308 0.00 0.00 39.80 3.01
1954 2413 7.461363 CCCCCATATATTACTCCCTTAGTTCTT 59.539 40.741 0.00 0.00 39.80 2.52
1955 2414 8.322091 CCCCATATATTACTCCCTTAGTTCTTG 58.678 40.741 0.00 0.00 39.80 3.02
1956 2415 9.101325 CCCATATATTACTCCCTTAGTTCTTGA 57.899 37.037 0.00 0.00 39.80 3.02
1960 2419 5.997384 TTACTCCCTTAGTTCTTGAGACC 57.003 43.478 0.00 0.00 39.80 3.85
1974 2433 4.658901 TCTTGAGACCCTAGTTCTTGGTTT 59.341 41.667 0.00 0.00 30.97 3.27
1975 2434 5.842328 TCTTGAGACCCTAGTTCTTGGTTTA 59.158 40.000 0.00 0.00 30.97 2.01
1976 2435 6.500751 TCTTGAGACCCTAGTTCTTGGTTTAT 59.499 38.462 0.00 0.00 30.97 1.40
1977 2436 7.676893 TCTTGAGACCCTAGTTCTTGGTTTATA 59.323 37.037 0.00 0.00 30.97 0.98
1987 2454 7.272144 AGTTCTTGGTTTATACTGGGATTCT 57.728 36.000 0.00 0.00 0.00 2.40
1988 2455 8.388656 AGTTCTTGGTTTATACTGGGATTCTA 57.611 34.615 0.00 0.00 0.00 2.10
1990 2457 7.743116 TCTTGGTTTATACTGGGATTCTACA 57.257 36.000 0.00 0.00 0.00 2.74
2001 2468 7.455641 ACTGGGATTCTACATACTATTCGAG 57.544 40.000 0.00 0.00 0.00 4.04
2018 2488 3.561503 TCGAGCCGTGTTGATATATTCG 58.438 45.455 0.00 0.00 0.00 3.34
2030 2500 8.799091 GTGTTGATATATTCGTCGATATTCAGG 58.201 37.037 0.00 0.00 0.00 3.86
2072 2542 6.806388 TGCTGTTGCATTCATCGATATAAT 57.194 33.333 0.00 0.00 45.31 1.28
2073 2543 6.834876 TGCTGTTGCATTCATCGATATAATC 58.165 36.000 0.00 0.00 45.31 1.75
2074 2544 6.427547 TGCTGTTGCATTCATCGATATAATCA 59.572 34.615 0.00 0.25 45.31 2.57
2085 2555 8.004087 TCATCGATATAATCATCTGCTGATCA 57.996 34.615 2.65 0.00 44.03 2.92
2100 2570 6.704937 TCTGCTGATCAGTTGATGTATTCATC 59.295 38.462 23.38 5.43 44.58 2.92
2101 2571 6.346678 CTGCTGATCAGTTGATGTATTCATCG 60.347 42.308 23.38 0.00 43.47 3.84
2102 2572 9.607055 CTGCTGATCAGTTGATGTATTCATCGC 62.607 44.444 23.38 4.76 43.47 4.58
2109 2579 3.777807 GATGTATTCATCGCGACCAAG 57.222 47.619 12.93 1.53 40.55 3.61
2110 2580 1.286501 TGTATTCATCGCGACCAAGC 58.713 50.000 12.93 5.21 0.00 4.01
2111 2581 1.286501 GTATTCATCGCGACCAAGCA 58.713 50.000 12.93 0.00 36.85 3.91
2113 2583 1.091771 ATTCATCGCGACCAAGCAGG 61.092 55.000 12.93 0.00 45.67 4.85
2114 2584 2.125552 CATCGCGACCAAGCAGGA 60.126 61.111 12.93 0.00 41.22 3.86
2115 2585 1.741401 CATCGCGACCAAGCAGGAA 60.741 57.895 12.93 0.00 41.22 3.36
2119 2665 2.035442 GCGACCAAGCAGGAAGGAC 61.035 63.158 1.83 0.00 41.22 3.85
2151 2697 4.898607 AGCCGTCCAGCTTTTTCA 57.101 50.000 0.00 0.00 41.41 2.69
2152 2698 2.331265 AGCCGTCCAGCTTTTTCAC 58.669 52.632 0.00 0.00 41.41 3.18
2154 2700 1.172812 GCCGTCCAGCTTTTTCACCT 61.173 55.000 0.00 0.00 0.00 4.00
2155 2701 0.593128 CCGTCCAGCTTTTTCACCTG 59.407 55.000 0.00 0.00 0.00 4.00
2156 2702 1.308998 CGTCCAGCTTTTTCACCTGT 58.691 50.000 0.00 0.00 0.00 4.00
2158 2704 2.099098 CGTCCAGCTTTTTCACCTGTTT 59.901 45.455 0.00 0.00 0.00 2.83
2159 2705 3.314080 CGTCCAGCTTTTTCACCTGTTTA 59.686 43.478 0.00 0.00 0.00 2.01
2160 2706 4.607955 GTCCAGCTTTTTCACCTGTTTAC 58.392 43.478 0.00 0.00 0.00 2.01
2161 2707 4.097286 GTCCAGCTTTTTCACCTGTTTACA 59.903 41.667 0.00 0.00 0.00 2.41
2169 2715 4.829064 TTCACCTGTTTACATTCAGTGC 57.171 40.909 0.00 0.00 0.00 4.40
2175 2721 3.669536 TGTTTACATTCAGTGCCGATGA 58.330 40.909 7.63 0.00 0.00 2.92
2176 2722 3.684305 TGTTTACATTCAGTGCCGATGAG 59.316 43.478 7.63 0.00 0.00 2.90
2177 2723 3.885724 TTACATTCAGTGCCGATGAGA 57.114 42.857 7.63 0.00 0.00 3.27
2178 2724 2.996249 ACATTCAGTGCCGATGAGAT 57.004 45.000 7.63 0.00 0.00 2.75
2180 2726 1.263484 CATTCAGTGCCGATGAGATGC 59.737 52.381 0.00 0.00 0.00 3.91
2181 2727 0.538584 TTCAGTGCCGATGAGATGCT 59.461 50.000 0.00 0.00 0.00 3.79
2182 2728 0.538584 TCAGTGCCGATGAGATGCTT 59.461 50.000 0.00 0.00 0.00 3.91
2183 2729 0.656259 CAGTGCCGATGAGATGCTTG 59.344 55.000 0.00 0.00 0.00 4.01
2184 2730 1.094073 AGTGCCGATGAGATGCTTGC 61.094 55.000 0.00 0.00 0.00 4.01
2186 2732 1.354506 GCCGATGAGATGCTTGCAC 59.645 57.895 0.00 0.00 0.00 4.57
2187 2733 1.094073 GCCGATGAGATGCTTGCACT 61.094 55.000 0.00 0.00 0.00 4.40
2190 2736 2.543641 CGATGAGATGCTTGCACTGTA 58.456 47.619 0.00 0.00 0.00 2.74
2191 2737 2.283617 CGATGAGATGCTTGCACTGTAC 59.716 50.000 0.00 0.00 0.00 2.90
2193 2739 1.002366 GAGATGCTTGCACTGTACGG 58.998 55.000 0.00 0.00 0.00 4.02
2194 2740 0.321671 AGATGCTTGCACTGTACGGT 59.678 50.000 0.04 0.04 0.00 4.83
2196 2742 0.955428 ATGCTTGCACTGTACGGTGG 60.955 55.000 30.98 18.25 37.65 4.61
2202 2748 0.320421 GCACTGTACGGTGGTGATGT 60.320 55.000 30.98 0.00 37.65 3.06
2203 2749 1.428448 CACTGTACGGTGGTGATGTG 58.572 55.000 24.65 0.00 33.95 3.21
2210 2756 1.202879 ACGGTGGTGATGTGGATTGTT 60.203 47.619 0.00 0.00 0.00 2.83
2213 2759 1.067635 GTGGTGATGTGGATTGTTGCC 60.068 52.381 0.00 0.00 0.00 4.52
2241 2787 3.760035 CGGTGCCAGCGGAGTAGT 61.760 66.667 8.71 0.00 35.16 2.73
2242 2788 2.412323 CGGTGCCAGCGGAGTAGTA 61.412 63.158 8.71 0.00 35.16 1.82
2243 2789 1.437986 GGTGCCAGCGGAGTAGTAG 59.562 63.158 0.00 0.00 0.00 2.57
2244 2790 1.321074 GGTGCCAGCGGAGTAGTAGT 61.321 60.000 0.00 0.00 0.00 2.73
2245 2791 1.386533 GTGCCAGCGGAGTAGTAGTA 58.613 55.000 0.00 0.00 0.00 1.82
2246 2792 1.065251 GTGCCAGCGGAGTAGTAGTAC 59.935 57.143 0.00 0.00 0.00 2.73
2247 2793 1.064906 TGCCAGCGGAGTAGTAGTACT 60.065 52.381 10.09 10.09 42.59 2.73
2248 2794 1.334243 GCCAGCGGAGTAGTAGTACTG 59.666 57.143 15.07 3.07 39.78 2.74
2249 2795 2.641305 CCAGCGGAGTAGTAGTACTGT 58.359 52.381 15.07 0.00 39.78 3.55
2250 2796 2.355132 CCAGCGGAGTAGTAGTACTGTG 59.645 54.545 15.07 7.99 39.78 3.66
2251 2797 3.008330 CAGCGGAGTAGTAGTACTGTGT 58.992 50.000 15.07 0.00 39.78 3.72
2252 2798 3.439476 CAGCGGAGTAGTAGTACTGTGTT 59.561 47.826 15.07 2.62 39.78 3.32
2259 2805 6.420008 GGAGTAGTAGTACTGTGTTGTTGTTG 59.580 42.308 15.07 0.00 39.78 3.33
2273 2819 3.335534 GTTGAGTTGCGCGTCGGT 61.336 61.111 8.43 0.00 0.00 4.69
2279 2825 3.334751 TTGCGCGTCGGTGTCAAG 61.335 61.111 8.43 0.00 0.00 3.02
2282 2828 4.059459 CGCGTCGGTGTCAAGCAC 62.059 66.667 0.00 0.00 46.97 4.40
2290 2836 2.105984 GTGTCAAGCACAACCAGCA 58.894 52.632 0.00 0.00 46.91 4.41
2303 2855 2.551270 CAGCAAACACGCCGAGAC 59.449 61.111 0.00 0.00 0.00 3.36
2309 2861 0.387929 AAACACGCCGAGACAAGAGA 59.612 50.000 0.00 0.00 0.00 3.10
2316 2868 1.801178 GCCGAGACAAGAGAAGGTTTG 59.199 52.381 0.00 0.00 0.00 2.93
2319 2871 3.060602 CGAGACAAGAGAAGGTTTGGAC 58.939 50.000 0.00 0.00 0.00 4.02
2320 2872 3.060602 GAGACAAGAGAAGGTTTGGACG 58.939 50.000 0.00 0.00 0.00 4.79
2321 2873 2.434702 AGACAAGAGAAGGTTTGGACGT 59.565 45.455 0.00 0.00 0.00 4.34
2325 2877 2.561569 AGAGAAGGTTTGGACGTGTTG 58.438 47.619 0.00 0.00 0.00 3.33
2326 2878 2.169769 AGAGAAGGTTTGGACGTGTTGA 59.830 45.455 0.00 0.00 0.00 3.18
2327 2879 2.285977 AGAAGGTTTGGACGTGTTGAC 58.714 47.619 0.00 0.00 0.00 3.18
2340 2892 0.878523 TGTTGACGGAAGCGTCCAAG 60.879 55.000 19.13 5.78 45.26 3.61
2344 2896 2.049433 CGGAAGCGTCCAAGTCGT 60.049 61.111 19.13 0.00 45.26 4.34
2345 2897 2.372690 CGGAAGCGTCCAAGTCGTG 61.373 63.158 19.13 0.00 45.26 4.35
2352 2904 1.668151 GTCCAAGTCGTGCCAGGTC 60.668 63.158 0.00 0.00 0.00 3.85
2367 2919 2.167861 GGTCAGCGAGGCGTGAATC 61.168 63.158 0.00 0.00 0.00 2.52
2368 2920 1.153745 GTCAGCGAGGCGTGAATCT 60.154 57.895 0.00 0.00 0.00 2.40
2369 2921 0.100682 GTCAGCGAGGCGTGAATCTA 59.899 55.000 0.00 0.00 0.00 1.98
2370 2922 1.032794 TCAGCGAGGCGTGAATCTAT 58.967 50.000 0.00 0.00 0.00 1.98
2371 2923 1.001268 TCAGCGAGGCGTGAATCTATC 60.001 52.381 0.00 0.00 0.00 2.08
2372 2924 1.000827 CAGCGAGGCGTGAATCTATCT 60.001 52.381 0.00 0.00 0.00 1.98
2373 2925 1.000827 AGCGAGGCGTGAATCTATCTG 60.001 52.381 0.00 0.00 0.00 2.90
2374 2926 1.001268 GCGAGGCGTGAATCTATCTGA 60.001 52.381 0.00 0.00 0.00 3.27
2375 2927 2.543861 GCGAGGCGTGAATCTATCTGAA 60.544 50.000 0.00 0.00 0.00 3.02
2376 2928 3.858877 GCGAGGCGTGAATCTATCTGAAT 60.859 47.826 0.00 0.00 0.00 2.57
2377 2929 4.616143 GCGAGGCGTGAATCTATCTGAATA 60.616 45.833 0.00 0.00 0.00 1.75
2378 2930 4.854291 CGAGGCGTGAATCTATCTGAATAC 59.146 45.833 0.00 0.00 0.00 1.89
2379 2931 5.335269 CGAGGCGTGAATCTATCTGAATACT 60.335 44.000 0.00 0.00 0.00 2.12
2380 2932 6.128254 CGAGGCGTGAATCTATCTGAATACTA 60.128 42.308 0.00 0.00 0.00 1.82
2381 2933 6.915349 AGGCGTGAATCTATCTGAATACTAC 58.085 40.000 0.00 0.00 0.00 2.73
2382 2934 6.717540 AGGCGTGAATCTATCTGAATACTACT 59.282 38.462 0.00 0.00 0.00 2.57
2383 2935 7.883833 AGGCGTGAATCTATCTGAATACTACTA 59.116 37.037 0.00 0.00 0.00 1.82
2384 2936 7.964011 GGCGTGAATCTATCTGAATACTACTAC 59.036 40.741 0.00 0.00 0.00 2.73
2385 2937 8.723311 GCGTGAATCTATCTGAATACTACTACT 58.277 37.037 0.00 0.00 0.00 2.57
2388 2940 9.999660 TGAATCTATCTGAATACTACTACTCGT 57.000 33.333 0.00 0.00 0.00 4.18
2390 2942 7.655236 TCTATCTGAATACTACTACTCGTGC 57.345 40.000 0.00 0.00 0.00 5.34
2391 2943 7.443477 TCTATCTGAATACTACTACTCGTGCT 58.557 38.462 0.00 0.00 0.00 4.40
2392 2944 6.945938 ATCTGAATACTACTACTCGTGCTT 57.054 37.500 0.00 0.00 0.00 3.91
2393 2945 6.360844 TCTGAATACTACTACTCGTGCTTC 57.639 41.667 0.00 0.00 0.00 3.86
2394 2946 5.878669 TCTGAATACTACTACTCGTGCTTCA 59.121 40.000 0.00 0.00 0.00 3.02
2395 2947 6.037281 TCTGAATACTACTACTCGTGCTTCAG 59.963 42.308 0.00 0.00 36.55 3.02
2396 2948 5.066117 TGAATACTACTACTCGTGCTTCAGG 59.934 44.000 0.00 0.00 0.00 3.86
2397 2949 1.473278 ACTACTACTCGTGCTTCAGGC 59.527 52.381 0.00 0.00 42.22 4.85
2398 2950 0.815734 TACTACTCGTGCTTCAGGCC 59.184 55.000 0.00 0.00 40.92 5.19
2399 2951 1.185618 ACTACTCGTGCTTCAGGCCA 61.186 55.000 5.01 0.00 40.92 5.36
2400 2952 0.037326 CTACTCGTGCTTCAGGCCAA 60.037 55.000 5.01 0.00 40.92 4.52
2401 2953 0.320421 TACTCGTGCTTCAGGCCAAC 60.320 55.000 5.01 0.00 40.92 3.77
2402 2954 1.302033 CTCGTGCTTCAGGCCAACT 60.302 57.895 5.01 0.00 40.92 3.16
2403 2955 0.037326 CTCGTGCTTCAGGCCAACTA 60.037 55.000 5.01 0.00 40.92 2.24
2404 2956 0.320421 TCGTGCTTCAGGCCAACTAC 60.320 55.000 5.01 0.00 40.92 2.73
2405 2957 0.602638 CGTGCTTCAGGCCAACTACA 60.603 55.000 5.01 0.00 40.92 2.74
2406 2958 0.875059 GTGCTTCAGGCCAACTACAC 59.125 55.000 5.01 3.74 40.92 2.90
2407 2959 0.250727 TGCTTCAGGCCAACTACACC 60.251 55.000 5.01 0.00 40.92 4.16
2408 2960 1.298859 GCTTCAGGCCAACTACACCG 61.299 60.000 5.01 0.00 34.27 4.94
2409 2961 0.320374 CTTCAGGCCAACTACACCGA 59.680 55.000 5.01 0.00 0.00 4.69
2410 2962 0.320374 TTCAGGCCAACTACACCGAG 59.680 55.000 5.01 0.00 0.00 4.63
2411 2963 1.741770 CAGGCCAACTACACCGAGC 60.742 63.158 5.01 0.00 0.00 5.03
2412 2964 2.214216 AGGCCAACTACACCGAGCA 61.214 57.895 5.01 0.00 0.00 4.26
2413 2965 1.302192 GGCCAACTACACCGAGCAA 60.302 57.895 0.00 0.00 0.00 3.91
2414 2966 1.574702 GGCCAACTACACCGAGCAAC 61.575 60.000 0.00 0.00 0.00 4.17
2415 2967 0.602905 GCCAACTACACCGAGCAACT 60.603 55.000 0.00 0.00 0.00 3.16
2416 2968 1.429463 CCAACTACACCGAGCAACTC 58.571 55.000 0.00 0.00 0.00 3.01
2417 2969 1.000955 CCAACTACACCGAGCAACTCT 59.999 52.381 0.00 0.00 0.00 3.24
2418 2970 2.230508 CCAACTACACCGAGCAACTCTA 59.769 50.000 0.00 0.00 0.00 2.43
2419 2971 3.119101 CCAACTACACCGAGCAACTCTAT 60.119 47.826 0.00 0.00 0.00 1.98
2420 2972 4.106197 CAACTACACCGAGCAACTCTATC 58.894 47.826 0.00 0.00 0.00 2.08
2421 2973 2.688958 ACTACACCGAGCAACTCTATCC 59.311 50.000 0.00 0.00 0.00 2.59
2422 2974 1.853963 ACACCGAGCAACTCTATCCT 58.146 50.000 0.00 0.00 0.00 3.24
2423 2975 1.478510 ACACCGAGCAACTCTATCCTG 59.521 52.381 0.00 0.00 0.00 3.86
2424 2976 1.478510 CACCGAGCAACTCTATCCTGT 59.521 52.381 0.00 0.00 0.00 4.00
2425 2977 2.093973 CACCGAGCAACTCTATCCTGTT 60.094 50.000 0.00 0.00 0.00 3.16
2426 2978 2.166664 ACCGAGCAACTCTATCCTGTTC 59.833 50.000 0.00 0.00 0.00 3.18
2427 2979 2.455032 CGAGCAACTCTATCCTGTTCG 58.545 52.381 0.00 0.00 37.44 3.95
2428 2980 2.197577 GAGCAACTCTATCCTGTTCGC 58.802 52.381 0.00 0.00 0.00 4.70
2429 2981 1.134670 AGCAACTCTATCCTGTTCGCC 60.135 52.381 0.00 0.00 0.00 5.54
2430 2982 1.941325 CAACTCTATCCTGTTCGCCC 58.059 55.000 0.00 0.00 0.00 6.13
2431 2983 0.831307 AACTCTATCCTGTTCGCCCC 59.169 55.000 0.00 0.00 0.00 5.80
2432 2984 1.049289 ACTCTATCCTGTTCGCCCCC 61.049 60.000 0.00 0.00 0.00 5.40
2433 2985 2.088674 CTCTATCCTGTTCGCCCCCG 62.089 65.000 0.00 0.00 0.00 5.73
2434 2986 2.364579 TATCCTGTTCGCCCCCGT 60.365 61.111 0.00 0.00 35.54 5.28
2435 2987 2.365095 CTATCCTGTTCGCCCCCGTC 62.365 65.000 0.00 0.00 35.54 4.79
2436 2988 2.866523 TATCCTGTTCGCCCCCGTCT 62.867 60.000 0.00 0.00 35.54 4.18
2437 2989 4.760047 CCTGTTCGCCCCCGTCTG 62.760 72.222 0.00 0.00 35.54 3.51
2438 2990 4.003788 CTGTTCGCCCCCGTCTGT 62.004 66.667 0.00 0.00 35.54 3.41
2439 2991 3.530910 CTGTTCGCCCCCGTCTGTT 62.531 63.158 0.00 0.00 35.54 3.16
2440 2992 2.281276 GTTCGCCCCCGTCTGTTT 60.281 61.111 0.00 0.00 35.54 2.83
2441 2993 2.281208 TTCGCCCCCGTCTGTTTG 60.281 61.111 0.00 0.00 35.54 2.93
2442 2994 3.835790 TTCGCCCCCGTCTGTTTGG 62.836 63.158 0.00 0.00 35.54 3.28
2448 3000 3.729726 CCCGTCTGTTTGGGGTAAA 57.270 52.632 0.00 0.00 42.05 2.01
2449 3001 1.984066 CCCGTCTGTTTGGGGTAAAA 58.016 50.000 0.00 0.00 42.05 1.52
2450 3002 1.883926 CCCGTCTGTTTGGGGTAAAAG 59.116 52.381 0.00 0.00 42.05 2.27
2451 3003 1.883926 CCGTCTGTTTGGGGTAAAAGG 59.116 52.381 0.00 0.00 0.00 3.11
2452 3004 1.883926 CGTCTGTTTGGGGTAAAAGGG 59.116 52.381 0.00 0.00 0.00 3.95
2453 3005 2.487625 CGTCTGTTTGGGGTAAAAGGGA 60.488 50.000 0.00 0.00 0.00 4.20
2454 3006 2.889045 GTCTGTTTGGGGTAAAAGGGAC 59.111 50.000 0.00 0.00 0.00 4.46
2455 3007 2.514582 TCTGTTTGGGGTAAAAGGGACA 59.485 45.455 0.00 0.00 0.00 4.02
2456 3008 3.052793 TCTGTTTGGGGTAAAAGGGACAA 60.053 43.478 0.00 0.00 0.00 3.18
2457 3009 3.032459 TGTTTGGGGTAAAAGGGACAAC 58.968 45.455 0.00 0.00 0.00 3.32
2458 3010 2.366266 GTTTGGGGTAAAAGGGACAACC 59.634 50.000 0.00 0.00 40.67 3.77
2459 3011 0.110869 TGGGGTAAAAGGGACAACCG 59.889 55.000 0.00 0.00 46.96 4.44
2460 3012 0.401356 GGGGTAAAAGGGACAACCGA 59.599 55.000 0.00 0.00 46.96 4.69
2461 3013 1.612462 GGGGTAAAAGGGACAACCGAG 60.612 57.143 0.00 0.00 46.96 4.63
2462 3014 1.348696 GGGTAAAAGGGACAACCGAGA 59.651 52.381 0.00 0.00 46.96 4.04
2463 3015 2.420642 GGTAAAAGGGACAACCGAGAC 58.579 52.381 0.00 0.00 46.96 3.36
2464 3016 2.064014 GTAAAAGGGACAACCGAGACG 58.936 52.381 0.00 0.00 46.96 4.18
2491 3043 3.284449 GCGGGTGCAAACGGACTT 61.284 61.111 12.44 0.00 42.15 3.01
2492 3044 2.841160 GCGGGTGCAAACGGACTTT 61.841 57.895 12.44 0.00 42.15 2.66
2493 3045 1.731093 CGGGTGCAAACGGACTTTT 59.269 52.632 3.55 0.00 0.00 2.27
2494 3046 0.593773 CGGGTGCAAACGGACTTTTG 60.594 55.000 3.55 0.00 39.15 2.44
2495 3047 0.458260 GGGTGCAAACGGACTTTTGT 59.542 50.000 0.00 0.00 38.51 2.83
2506 3058 2.296012 GACTTTTGTCCGCTTTCGAC 57.704 50.000 0.00 0.00 43.37 4.20
2507 3059 0.942252 ACTTTTGTCCGCTTTCGACC 59.058 50.000 0.00 0.00 38.10 4.79
2508 3060 0.237498 CTTTTGTCCGCTTTCGACCC 59.763 55.000 0.00 0.00 38.10 4.46
2509 3061 0.464013 TTTTGTCCGCTTTCGACCCA 60.464 50.000 0.00 0.00 38.10 4.51
2510 3062 0.250553 TTTGTCCGCTTTCGACCCAT 60.251 50.000 0.00 0.00 38.10 4.00
2511 3063 0.672401 TTGTCCGCTTTCGACCCATC 60.672 55.000 0.00 0.00 38.10 3.51
2512 3064 1.814169 GTCCGCTTTCGACCCATCC 60.814 63.158 0.00 0.00 38.10 3.51
2513 3065 2.513897 CCGCTTTCGACCCATCCC 60.514 66.667 0.00 0.00 38.10 3.85
2514 3066 2.513897 CGCTTTCGACCCATCCCC 60.514 66.667 0.00 0.00 38.10 4.81
2515 3067 2.513897 GCTTTCGACCCATCCCCG 60.514 66.667 0.00 0.00 0.00 5.73
2516 3068 2.189521 CTTTCGACCCATCCCCGG 59.810 66.667 0.00 0.00 0.00 5.73
2517 3069 4.104183 TTTCGACCCATCCCCGGC 62.104 66.667 0.00 0.00 0.00 6.13
2524 3076 4.060667 CCATCCCCGGCCCAAGTT 62.061 66.667 0.00 0.00 0.00 2.66
2525 3077 2.037208 CATCCCCGGCCCAAGTTT 59.963 61.111 0.00 0.00 0.00 2.66
2526 3078 2.037208 ATCCCCGGCCCAAGTTTG 59.963 61.111 0.00 0.00 0.00 2.93
2527 3079 4.986708 TCCCCGGCCCAAGTTTGC 62.987 66.667 0.00 0.00 0.00 3.68
2534 3086 4.038080 CCCAAGTTTGCGCCGGTC 62.038 66.667 4.18 0.00 0.00 4.79
2535 3087 4.038080 CCAAGTTTGCGCCGGTCC 62.038 66.667 4.18 0.00 0.00 4.46
2536 3088 4.038080 CAAGTTTGCGCCGGTCCC 62.038 66.667 4.18 0.00 0.00 4.46
2555 3107 4.839706 CCCTCCCCCGCCCATTTG 62.840 72.222 0.00 0.00 0.00 2.32
2556 3108 4.839706 CCTCCCCCGCCCATTTGG 62.840 72.222 0.00 0.00 37.09 3.28
2565 3117 4.519182 CCCATTTGGCGCCATTTC 57.481 55.556 33.25 0.60 0.00 2.17
2566 3118 1.153389 CCCATTTGGCGCCATTTCC 60.153 57.895 33.25 0.00 0.00 3.13
2567 3119 1.153389 CCATTTGGCGCCATTTCCC 60.153 57.895 33.25 0.00 0.00 3.97
2568 3120 1.153389 CATTTGGCGCCATTTCCCC 60.153 57.895 33.25 0.00 0.00 4.81
2569 3121 1.611851 ATTTGGCGCCATTTCCCCA 60.612 52.632 33.25 10.98 0.00 4.96
2570 3122 1.197430 ATTTGGCGCCATTTCCCCAA 61.197 50.000 33.25 20.31 35.68 4.12
2571 3123 1.410850 TTTGGCGCCATTTCCCCAAA 61.411 50.000 33.25 16.45 43.05 3.28
2572 3124 2.105806 TTGGCGCCATTTCCCCAAAC 62.106 55.000 33.25 0.00 34.62 2.93
2573 3125 2.264480 GCGCCATTTCCCCAAACC 59.736 61.111 0.00 0.00 0.00 3.27
2574 3126 2.978000 CGCCATTTCCCCAAACCC 59.022 61.111 0.00 0.00 0.00 4.11
2575 3127 1.609210 CGCCATTTCCCCAAACCCT 60.609 57.895 0.00 0.00 0.00 4.34
2576 3128 1.604147 CGCCATTTCCCCAAACCCTC 61.604 60.000 0.00 0.00 0.00 4.30
2577 3129 1.264749 GCCATTTCCCCAAACCCTCC 61.265 60.000 0.00 0.00 0.00 4.30
2578 3130 0.617535 CCATTTCCCCAAACCCTCCC 60.618 60.000 0.00 0.00 0.00 4.30
2579 3131 0.116143 CATTTCCCCAAACCCTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2580 3132 0.116342 ATTTCCCCAAACCCTCCCAC 59.884 55.000 0.00 0.00 0.00 4.61
2581 3133 2.360439 TTTCCCCAAACCCTCCCACG 62.360 60.000 0.00 0.00 0.00 4.94
2582 3134 3.576259 CCCCAAACCCTCCCACGT 61.576 66.667 0.00 0.00 0.00 4.49
2583 3135 2.033602 CCCAAACCCTCCCACGTC 59.966 66.667 0.00 0.00 0.00 4.34
2584 3136 2.033602 CCAAACCCTCCCACGTCC 59.966 66.667 0.00 0.00 0.00 4.79
2585 3137 2.033602 CAAACCCTCCCACGTCCC 59.966 66.667 0.00 0.00 0.00 4.46
2586 3138 2.122099 AAACCCTCCCACGTCCCT 60.122 61.111 0.00 0.00 0.00 4.20
2587 3139 2.222013 AAACCCTCCCACGTCCCTC 61.222 63.158 0.00 0.00 0.00 4.30
2588 3140 4.716977 ACCCTCCCACGTCCCTCC 62.717 72.222 0.00 0.00 0.00 4.30
2613 3165 4.862823 CCCCCTCTCTCCCCCGTC 62.863 77.778 0.00 0.00 0.00 4.79
2614 3166 4.862823 CCCCTCTCTCCCCCGTCC 62.863 77.778 0.00 0.00 0.00 4.79
2615 3167 4.075793 CCCTCTCTCCCCCGTCCA 62.076 72.222 0.00 0.00 0.00 4.02
2616 3168 2.283809 CCTCTCTCCCCCGTCCAT 59.716 66.667 0.00 0.00 0.00 3.41
2617 3169 2.136878 CCTCTCTCCCCCGTCCATG 61.137 68.421 0.00 0.00 0.00 3.66
2618 3170 2.041922 TCTCTCCCCCGTCCATGG 60.042 66.667 4.97 4.97 0.00 3.66
2619 3171 2.365635 CTCTCCCCCGTCCATGGT 60.366 66.667 12.58 0.00 0.00 3.55
2620 3172 2.365105 TCTCCCCCGTCCATGGTC 60.365 66.667 12.58 5.07 0.00 4.02
2621 3173 3.849951 CTCCCCCGTCCATGGTCG 61.850 72.222 22.37 22.37 0.00 4.79
2622 3174 4.385740 TCCCCCGTCCATGGTCGA 62.386 66.667 29.27 9.45 0.00 4.20
2623 3175 4.157120 CCCCCGTCCATGGTCGAC 62.157 72.222 29.27 12.12 0.00 4.20
2628 3180 4.832608 GTCCATGGTCGACGCCCC 62.833 72.222 12.58 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.737376 GGACACGACGTGGAAGGC 60.737 66.667 29.86 14.00 37.94 4.35
4 5 1.066752 CTGTGGACACGACGTGGAA 59.933 57.895 29.86 13.38 37.94 3.53
5 6 1.824760 TCTGTGGACACGACGTGGA 60.825 57.895 29.86 14.56 37.94 4.02
6 7 1.660575 GTCTGTGGACACGACGTGG 60.661 63.158 29.86 12.49 41.75 4.94
8 9 1.099295 TCTGTCTGTGGACACGACGT 61.099 55.000 16.46 0.00 46.19 4.34
10 11 1.702886 CATCTGTCTGTGGACACGAC 58.297 55.000 15.44 15.44 46.19 4.34
11 12 0.038251 GCATCTGTCTGTGGACACGA 60.038 55.000 0.00 0.00 46.19 4.35
17 18 1.153489 CTCCCGCATCTGTCTGTGG 60.153 63.158 5.85 5.85 44.74 4.17
19 20 0.904865 TTCCTCCCGCATCTGTCTGT 60.905 55.000 0.00 0.00 0.00 3.41
25 26 0.678048 GCAAGTTTCCTCCCGCATCT 60.678 55.000 0.00 0.00 0.00 2.90
31 32 3.062466 GCCCGCAAGTTTCCTCCC 61.062 66.667 0.00 0.00 0.00 4.30
32 33 1.179174 AAAGCCCGCAAGTTTCCTCC 61.179 55.000 0.00 0.00 0.00 4.30
107 109 1.333636 CCTCTCTCGCCCTGGTCAAT 61.334 60.000 0.00 0.00 0.00 2.57
129 131 0.102120 GTGTGAGAGGAGGAGATGCG 59.898 60.000 0.00 0.00 0.00 4.73
132 134 1.380403 CGCGTGTGAGAGGAGGAGAT 61.380 60.000 0.00 0.00 0.00 2.75
152 154 2.825836 CCCATCTCCTGGCGTTGC 60.826 66.667 0.00 0.00 44.46 4.17
159 161 3.473647 TCGCAGCCCCATCTCCTG 61.474 66.667 0.00 0.00 0.00 3.86
174 176 2.027625 GAAGGTGCGGGAGTTGTCG 61.028 63.158 0.00 0.00 0.00 4.35
175 177 0.670854 GAGAAGGTGCGGGAGTTGTC 60.671 60.000 0.00 0.00 0.00 3.18
205 208 2.250939 TGAAGCTGCGTCCGTTTGG 61.251 57.895 12.89 0.00 0.00 3.28
238 242 0.971386 GGGGTTACGGTGAGACTTGA 59.029 55.000 0.00 0.00 0.00 3.02
249 253 1.808891 CGGCTGATAAAGGGGGTTACG 60.809 57.143 0.00 0.00 0.00 3.18
250 254 1.211212 ACGGCTGATAAAGGGGGTTAC 59.789 52.381 0.00 0.00 0.00 2.50
253 257 1.632965 GGACGGCTGATAAAGGGGGT 61.633 60.000 0.00 0.00 0.00 4.95
279 283 5.968528 AGGTCAATCTAGTATGTCGGATC 57.031 43.478 0.00 0.00 0.00 3.36
286 290 9.799106 ATTGGGAAAATAGGTCAATCTAGTATG 57.201 33.333 0.00 0.00 0.00 2.39
287 291 9.799106 CATTGGGAAAATAGGTCAATCTAGTAT 57.201 33.333 0.00 0.00 0.00 2.12
368 373 9.621629 TGAAACTATCCCATAATACAAAACGAT 57.378 29.630 0.00 0.00 0.00 3.73
370 375 9.498307 GTTGAAACTATCCCATAATACAAAACG 57.502 33.333 0.00 0.00 0.00 3.60
388 393 5.187576 CCATACATCCAAATGGGTTGAAACT 59.812 40.000 0.00 0.00 39.87 2.66
398 403 9.650539 TTTAATCACAAACCATACATCCAAATG 57.349 29.630 0.00 0.00 38.93 2.32
404 409 8.850156 AGGCTATTTAATCACAAACCATACATC 58.150 33.333 0.00 0.00 0.00 3.06
463 468 3.768406 TGCATTTGGATGTATCGTTTGC 58.232 40.909 0.00 0.00 35.63 3.68
467 472 9.598517 AAATTTAAATGCATTTGGATGTATCGT 57.401 25.926 30.43 6.05 37.58 3.73
569 575 7.510549 ACCGGGTTGATTCATATTTAGAATG 57.489 36.000 6.32 0.00 35.93 2.67
573 579 5.987347 ACGTACCGGGTTGATTCATATTTAG 59.013 40.000 4.31 0.00 0.00 1.85
574 580 5.916318 ACGTACCGGGTTGATTCATATTTA 58.084 37.500 4.31 0.00 0.00 1.40
580 586 0.967662 TGACGTACCGGGTTGATTCA 59.032 50.000 4.31 0.51 0.00 2.57
582 588 0.248289 CCTGACGTACCGGGTTGATT 59.752 55.000 4.31 0.00 0.00 2.57
588 594 1.105167 TATCAGCCTGACGTACCGGG 61.105 60.000 6.32 0.00 35.66 5.73
589 595 0.311165 CTATCAGCCTGACGTACCGG 59.689 60.000 0.00 0.00 0.00 5.28
591 597 1.609555 CCTCTATCAGCCTGACGTACC 59.390 57.143 0.00 0.00 0.00 3.34
600 606 0.980423 CTTAGGCCCCTCTATCAGCC 59.020 60.000 0.00 0.00 46.13 4.85
601 607 1.723288 ACTTAGGCCCCTCTATCAGC 58.277 55.000 0.00 0.00 0.00 4.26
602 608 3.256136 CGTAACTTAGGCCCCTCTATCAG 59.744 52.174 0.00 0.00 0.00 2.90
604 610 3.494332 TCGTAACTTAGGCCCCTCTATC 58.506 50.000 0.00 0.00 0.00 2.08
605 611 3.607490 TCGTAACTTAGGCCCCTCTAT 57.393 47.619 0.00 0.00 0.00 1.98
606 612 3.117398 TCATCGTAACTTAGGCCCCTCTA 60.117 47.826 0.00 0.00 0.00 2.43
608 614 2.036089 CTCATCGTAACTTAGGCCCCTC 59.964 54.545 0.00 0.00 0.00 4.30
609 615 2.040178 CTCATCGTAACTTAGGCCCCT 58.960 52.381 0.00 0.00 0.00 4.79
614 634 4.113354 GCCAAGTCTCATCGTAACTTAGG 58.887 47.826 0.00 0.00 32.20 2.69
625 645 4.260170 GACTTCATGAAGCCAAGTCTCAT 58.740 43.478 30.95 10.96 41.87 2.90
651 671 1.664873 GTTTGGAGGGGACGCTATTC 58.335 55.000 0.00 0.00 0.00 1.75
654 674 1.909781 ACGTTTGGAGGGGACGCTA 60.910 57.895 0.00 0.00 40.22 4.26
655 675 3.239253 ACGTTTGGAGGGGACGCT 61.239 61.111 0.00 0.00 40.22 5.07
667 688 1.782028 GCGCAGGGAAGAACACGTTT 61.782 55.000 0.30 0.00 0.00 3.60
668 689 2.251642 GCGCAGGGAAGAACACGTT 61.252 57.895 0.30 0.00 0.00 3.99
718 739 1.132640 GAATCGCGGTGAGTTGTGC 59.867 57.895 6.13 0.00 0.00 4.57
724 745 1.278238 GTAAGGTGAATCGCGGTGAG 58.722 55.000 6.13 0.00 0.00 3.51
741 766 4.537751 TGTGAGTTTTGGTGGGATTTGTA 58.462 39.130 0.00 0.00 0.00 2.41
846 905 1.829849 GGCGGGATATAAGTAGGGGAC 59.170 57.143 0.00 0.00 0.00 4.46
871 1236 1.745489 GGTGGATTGCGGAGACACC 60.745 63.158 10.08 10.08 43.98 4.16
874 1239 0.815615 GGATGGTGGATTGCGGAGAC 60.816 60.000 0.00 0.00 0.00 3.36
877 1242 0.258484 ATTGGATGGTGGATTGCGGA 59.742 50.000 0.00 0.00 0.00 5.54
900 1265 1.633774 GCGAGGAGGAGATTATGGGA 58.366 55.000 0.00 0.00 0.00 4.37
967 1347 2.356673 GCTTTTGCTGCTGGTGCC 60.357 61.111 0.00 0.00 43.35 5.01
985 1365 0.671251 CCCATCGAGTAGAGCTGGTC 59.329 60.000 0.00 0.00 29.06 4.02
1119 1508 1.063567 ACGAAGTAGAGGATGAGGGCT 60.064 52.381 0.00 0.00 41.94 5.19
1425 1814 2.833227 AGGTTGGCCTGCGTAACA 59.167 55.556 3.32 0.00 45.05 2.41
1685 2130 3.131478 GGATCCCGCAACCAACCG 61.131 66.667 0.00 0.00 0.00 4.44
1686 2131 0.898326 AAAGGATCCCGCAACCAACC 60.898 55.000 8.55 0.00 0.00 3.77
1692 2138 0.175760 CGAGAGAAAGGATCCCGCAA 59.824 55.000 8.55 0.00 0.00 4.85
1693 2139 0.683179 TCGAGAGAAAGGATCCCGCA 60.683 55.000 8.55 0.00 37.03 5.69
1694 2140 2.116383 TCGAGAGAAAGGATCCCGC 58.884 57.895 8.55 0.00 37.03 6.13
1711 2157 4.332819 ACCAACCAATCGAATCGAAGAATC 59.667 41.667 10.12 0.00 43.58 2.52
1712 2158 4.261801 ACCAACCAATCGAATCGAAGAAT 58.738 39.130 10.12 0.00 43.58 2.40
1713 2159 3.670625 ACCAACCAATCGAATCGAAGAA 58.329 40.909 10.12 0.00 43.58 2.52
1714 2160 3.328382 ACCAACCAATCGAATCGAAGA 57.672 42.857 10.12 0.00 39.99 2.87
1715 2161 4.158384 CAAACCAACCAATCGAATCGAAG 58.842 43.478 10.12 5.44 39.99 3.79
1716 2162 3.566322 ACAAACCAACCAATCGAATCGAA 59.434 39.130 10.12 0.00 39.99 3.71
1717 2163 3.142951 ACAAACCAACCAATCGAATCGA 58.857 40.909 8.12 8.12 41.13 3.59
1718 2164 3.552604 ACAAACCAACCAATCGAATCG 57.447 42.857 0.00 0.00 0.00 3.34
1719 2165 3.428534 GCAACAAACCAACCAATCGAATC 59.571 43.478 0.00 0.00 0.00 2.52
1720 2166 3.389221 GCAACAAACCAACCAATCGAAT 58.611 40.909 0.00 0.00 0.00 3.34
1721 2167 2.796383 CGCAACAAACCAACCAATCGAA 60.796 45.455 0.00 0.00 0.00 3.71
1722 2168 1.268794 CGCAACAAACCAACCAATCGA 60.269 47.619 0.00 0.00 0.00 3.59
1723 2169 1.127701 CGCAACAAACCAACCAATCG 58.872 50.000 0.00 0.00 0.00 3.34
1724 2170 1.496934 CCGCAACAAACCAACCAATC 58.503 50.000 0.00 0.00 0.00 2.67
1725 2171 0.105778 CCCGCAACAAACCAACCAAT 59.894 50.000 0.00 0.00 0.00 3.16
1736 2182 2.918345 GCAACAGCATCCCGCAACA 61.918 57.895 0.00 0.00 46.13 3.33
1778 2227 8.478775 TCTAGCAAGATGTACATACTAATGGT 57.521 34.615 8.71 11.04 37.43 3.55
1792 2241 5.466058 AGATGCGAAAATCTCTAGCAAGATG 59.534 40.000 0.00 0.00 41.37 2.90
1846 2305 9.613957 CCGATAATATGTGCATATAGTAGCTAC 57.386 37.037 19.22 16.43 33.86 3.58
1847 2306 9.350951 ACCGATAATATGTGCATATAGTAGCTA 57.649 33.333 19.22 0.00 33.86 3.32
1848 2307 8.239038 ACCGATAATATGTGCATATAGTAGCT 57.761 34.615 19.22 4.69 33.86 3.32
1849 2308 7.323895 CGACCGATAATATGTGCATATAGTAGC 59.676 40.741 13.92 13.92 33.86 3.58
1850 2309 7.803659 CCGACCGATAATATGTGCATATAGTAG 59.196 40.741 14.53 5.73 33.86 2.57
1851 2310 7.283807 ACCGACCGATAATATGTGCATATAGTA 59.716 37.037 12.14 12.14 33.86 1.82
1852 2311 6.096423 ACCGACCGATAATATGTGCATATAGT 59.904 38.462 9.17 8.82 33.86 2.12
1872 2331 1.331138 CGAGTGATCTCTACCACCGAC 59.669 57.143 0.00 0.00 38.45 4.79
1895 2354 4.649088 ACTGCTAACAAAGAACCAAACC 57.351 40.909 0.00 0.00 0.00 3.27
1930 2389 9.101325 TCAAGAACTAAGGGAGTAATATATGGG 57.899 37.037 0.00 0.00 37.44 4.00
1934 2393 9.364653 GGTCTCAAGAACTAAGGGAGTAATATA 57.635 37.037 0.00 0.00 37.44 0.86
1935 2394 7.290481 GGGTCTCAAGAACTAAGGGAGTAATAT 59.710 40.741 0.00 0.00 37.44 1.28
1943 2402 4.354662 ACTAGGGTCTCAAGAACTAAGGG 58.645 47.826 0.00 0.00 31.02 3.95
1944 2403 5.717654 AGAACTAGGGTCTCAAGAACTAAGG 59.282 44.000 0.00 0.00 31.02 2.69
1945 2404 6.844097 AGAACTAGGGTCTCAAGAACTAAG 57.156 41.667 0.00 0.00 31.02 2.18
1946 2405 6.014499 CCAAGAACTAGGGTCTCAAGAACTAA 60.014 42.308 0.00 0.00 31.02 2.24
1947 2406 5.480772 CCAAGAACTAGGGTCTCAAGAACTA 59.519 44.000 0.00 0.00 31.02 2.24
1948 2407 4.284746 CCAAGAACTAGGGTCTCAAGAACT 59.715 45.833 0.00 0.00 31.02 3.01
1949 2408 4.040584 ACCAAGAACTAGGGTCTCAAGAAC 59.959 45.833 0.00 0.00 0.00 3.01
1950 2409 4.232091 ACCAAGAACTAGGGTCTCAAGAA 58.768 43.478 0.00 0.00 0.00 2.52
1951 2410 3.858135 ACCAAGAACTAGGGTCTCAAGA 58.142 45.455 0.00 0.00 0.00 3.02
1952 2411 4.625607 AACCAAGAACTAGGGTCTCAAG 57.374 45.455 0.00 0.00 32.67 3.02
1953 2412 6.697641 ATAAACCAAGAACTAGGGTCTCAA 57.302 37.500 0.00 0.00 32.67 3.02
1954 2413 6.958192 AGTATAAACCAAGAACTAGGGTCTCA 59.042 38.462 0.00 0.00 32.67 3.27
1955 2414 7.266400 CAGTATAAACCAAGAACTAGGGTCTC 58.734 42.308 0.00 0.00 32.67 3.36
1956 2415 6.156429 CCAGTATAAACCAAGAACTAGGGTCT 59.844 42.308 0.00 0.00 32.67 3.85
1957 2416 6.346896 CCAGTATAAACCAAGAACTAGGGTC 58.653 44.000 0.00 0.00 32.67 4.46
1958 2417 5.191124 CCCAGTATAAACCAAGAACTAGGGT 59.809 44.000 0.00 0.00 36.19 4.34
1959 2418 5.427481 TCCCAGTATAAACCAAGAACTAGGG 59.573 44.000 0.00 0.00 33.46 3.53
1960 2419 6.555463 TCCCAGTATAAACCAAGAACTAGG 57.445 41.667 0.00 0.00 0.00 3.02
1975 2434 9.179909 CTCGAATAGTATGTAGAATCCCAGTAT 57.820 37.037 0.00 0.00 0.00 2.12
1976 2435 7.120873 GCTCGAATAGTATGTAGAATCCCAGTA 59.879 40.741 0.00 0.00 0.00 2.74
1977 2436 6.071840 GCTCGAATAGTATGTAGAATCCCAGT 60.072 42.308 0.00 0.00 0.00 4.00
1987 2454 4.336153 TCAACACGGCTCGAATAGTATGTA 59.664 41.667 1.50 0.00 0.00 2.29
1988 2455 3.129813 TCAACACGGCTCGAATAGTATGT 59.870 43.478 1.50 0.00 0.00 2.29
1990 2457 4.585955 ATCAACACGGCTCGAATAGTAT 57.414 40.909 1.50 0.00 0.00 2.12
2001 2468 3.302555 TCGACGAATATATCAACACGGC 58.697 45.455 0.00 0.00 0.00 5.68
2018 2488 7.974675 TGAATGAAAGAAACCTGAATATCGAC 58.025 34.615 0.00 0.00 0.00 4.20
2030 2500 5.238214 ACAGCAGAGTCTGAATGAAAGAAAC 59.762 40.000 24.55 1.20 37.51 2.78
2073 2543 6.482308 TGAATACATCAACTGATCAGCAGATG 59.518 38.462 34.11 34.11 45.72 2.90
2074 2544 6.589135 TGAATACATCAACTGATCAGCAGAT 58.411 36.000 22.83 20.82 40.19 2.90
2092 2562 1.258982 CTGCTTGGTCGCGATGAATAC 59.741 52.381 14.06 0.00 0.00 1.89
2100 2570 3.121030 CCTTCCTGCTTGGTCGCG 61.121 66.667 0.00 0.00 37.07 5.87
2101 2571 2.035442 GTCCTTCCTGCTTGGTCGC 61.035 63.158 0.00 0.00 37.07 5.19
2102 2572 1.738099 CGTCCTTCCTGCTTGGTCG 60.738 63.158 0.00 0.00 37.07 4.79
2103 2573 0.250513 ATCGTCCTTCCTGCTTGGTC 59.749 55.000 0.00 0.00 37.07 4.02
2104 2574 0.693049 AATCGTCCTTCCTGCTTGGT 59.307 50.000 0.00 0.00 37.07 3.67
2106 2576 1.394917 CGAAATCGTCCTTCCTGCTTG 59.605 52.381 0.00 0.00 34.11 4.01
2107 2577 1.726853 CGAAATCGTCCTTCCTGCTT 58.273 50.000 0.00 0.00 34.11 3.91
2108 2578 0.741221 GCGAAATCGTCCTTCCTGCT 60.741 55.000 4.59 0.00 42.22 4.24
2109 2579 1.019278 TGCGAAATCGTCCTTCCTGC 61.019 55.000 4.59 0.00 42.22 4.85
2110 2580 0.721718 GTGCGAAATCGTCCTTCCTG 59.278 55.000 4.59 0.00 42.22 3.86
2111 2581 0.736325 CGTGCGAAATCGTCCTTCCT 60.736 55.000 4.59 0.00 42.22 3.36
2113 2583 1.065358 TTCGTGCGAAATCGTCCTTC 58.935 50.000 4.43 0.00 42.22 3.46
2114 2584 1.504359 TTTCGTGCGAAATCGTCCTT 58.496 45.000 14.66 0.00 38.95 3.36
2115 2585 1.459592 CTTTTCGTGCGAAATCGTCCT 59.540 47.619 18.46 0.00 42.71 3.85
2119 2665 1.120147 CGGCTTTTCGTGCGAAATCG 61.120 55.000 18.46 17.25 42.71 3.34
2150 2696 2.095768 CGGCACTGAATGTAAACAGGTG 60.096 50.000 0.00 0.00 38.30 4.00
2151 2697 2.151202 CGGCACTGAATGTAAACAGGT 58.849 47.619 0.00 0.00 38.30 4.00
2152 2698 2.422597 TCGGCACTGAATGTAAACAGG 58.577 47.619 0.00 0.00 38.30 4.00
2154 2700 3.669536 TCATCGGCACTGAATGTAAACA 58.330 40.909 0.00 0.00 0.00 2.83
2155 2701 3.932710 TCTCATCGGCACTGAATGTAAAC 59.067 43.478 0.00 0.00 0.00 2.01
2156 2702 4.200838 TCTCATCGGCACTGAATGTAAA 57.799 40.909 0.00 0.00 0.00 2.01
2158 2704 3.721035 CATCTCATCGGCACTGAATGTA 58.279 45.455 0.00 0.00 0.00 2.29
2159 2705 2.558378 CATCTCATCGGCACTGAATGT 58.442 47.619 0.00 0.00 0.00 2.71
2160 2706 1.263484 GCATCTCATCGGCACTGAATG 59.737 52.381 0.00 0.00 0.00 2.67
2161 2707 1.140452 AGCATCTCATCGGCACTGAAT 59.860 47.619 0.00 0.00 0.00 2.57
2169 2715 0.656259 CAGTGCAAGCATCTCATCGG 59.344 55.000 0.00 0.00 0.00 4.18
2175 2721 0.321671 ACCGTACAGTGCAAGCATCT 59.678 50.000 0.00 0.00 0.00 2.90
2176 2722 0.443869 CACCGTACAGTGCAAGCATC 59.556 55.000 0.00 0.00 0.00 3.91
2177 2723 0.955428 CCACCGTACAGTGCAAGCAT 60.955 55.000 3.54 0.00 36.38 3.79
2178 2724 1.596752 CCACCGTACAGTGCAAGCA 60.597 57.895 3.54 0.00 36.38 3.91
2180 2726 0.249699 TCACCACCGTACAGTGCAAG 60.250 55.000 3.54 0.00 36.38 4.01
2181 2727 0.394938 ATCACCACCGTACAGTGCAA 59.605 50.000 3.54 0.00 36.38 4.08
2182 2728 0.320334 CATCACCACCGTACAGTGCA 60.320 55.000 3.54 0.00 36.38 4.57
2183 2729 0.320421 ACATCACCACCGTACAGTGC 60.320 55.000 3.54 0.00 36.38 4.40
2184 2730 1.428448 CACATCACCACCGTACAGTG 58.572 55.000 2.00 2.00 37.51 3.66
2186 2732 0.606096 TCCACATCACCACCGTACAG 59.394 55.000 0.00 0.00 0.00 2.74
2187 2733 1.271856 ATCCACATCACCACCGTACA 58.728 50.000 0.00 0.00 0.00 2.90
2190 2736 0.400213 ACAATCCACATCACCACCGT 59.600 50.000 0.00 0.00 0.00 4.83
2191 2737 1.199789 CAACAATCCACATCACCACCG 59.800 52.381 0.00 0.00 0.00 4.94
2193 2739 1.067635 GGCAACAATCCACATCACCAC 60.068 52.381 0.00 0.00 0.00 4.16
2194 2740 1.203038 AGGCAACAATCCACATCACCA 60.203 47.619 0.00 0.00 41.41 4.17
2196 2742 1.403249 GCAGGCAACAATCCACATCAC 60.403 52.381 0.00 0.00 41.41 3.06
2202 2748 2.676121 CCGGCAGGCAACAATCCA 60.676 61.111 0.00 0.00 41.41 3.41
2224 2770 2.337749 CTACTACTCCGCTGGCACCG 62.338 65.000 0.00 0.00 0.00 4.94
2226 2772 1.065251 GTACTACTACTCCGCTGGCAC 59.935 57.143 0.00 0.00 0.00 5.01
2227 2773 1.064906 AGTACTACTACTCCGCTGGCA 60.065 52.381 0.00 0.00 0.00 4.92
2228 2774 1.334243 CAGTACTACTACTCCGCTGGC 59.666 57.143 0.00 0.00 30.03 4.85
2229 2775 2.355132 CACAGTACTACTACTCCGCTGG 59.645 54.545 0.00 0.00 30.03 4.85
2230 2776 3.008330 ACACAGTACTACTACTCCGCTG 58.992 50.000 0.00 0.00 30.03 5.18
2231 2777 3.347077 ACACAGTACTACTACTCCGCT 57.653 47.619 0.00 0.00 30.03 5.52
2232 2778 3.190118 ACAACACAGTACTACTACTCCGC 59.810 47.826 0.00 0.00 30.03 5.54
2233 2779 5.152097 CAACAACACAGTACTACTACTCCG 58.848 45.833 0.00 0.00 30.03 4.63
2234 2780 6.081872 ACAACAACACAGTACTACTACTCC 57.918 41.667 0.00 0.00 30.03 3.85
2235 2781 7.198390 TCAACAACAACACAGTACTACTACTC 58.802 38.462 0.00 0.00 30.03 2.59
2236 2782 7.104043 TCAACAACAACACAGTACTACTACT 57.896 36.000 0.00 0.00 33.01 2.57
2237 2783 6.976925 ACTCAACAACAACACAGTACTACTAC 59.023 38.462 0.00 0.00 0.00 2.73
2238 2784 7.104043 ACTCAACAACAACACAGTACTACTA 57.896 36.000 0.00 0.00 0.00 1.82
2239 2785 5.974108 ACTCAACAACAACACAGTACTACT 58.026 37.500 0.00 0.00 0.00 2.57
2240 2786 6.475207 CAACTCAACAACAACACAGTACTAC 58.525 40.000 0.00 0.00 0.00 2.73
2241 2787 5.064198 GCAACTCAACAACAACACAGTACTA 59.936 40.000 0.00 0.00 0.00 1.82
2242 2788 4.142687 GCAACTCAACAACAACACAGTACT 60.143 41.667 0.00 0.00 0.00 2.73
2243 2789 4.095610 GCAACTCAACAACAACACAGTAC 58.904 43.478 0.00 0.00 0.00 2.73
2244 2790 3.181515 CGCAACTCAACAACAACACAGTA 60.182 43.478 0.00 0.00 0.00 2.74
2245 2791 2.414029 CGCAACTCAACAACAACACAGT 60.414 45.455 0.00 0.00 0.00 3.55
2246 2792 2.176369 CGCAACTCAACAACAACACAG 58.824 47.619 0.00 0.00 0.00 3.66
2247 2793 1.730772 GCGCAACTCAACAACAACACA 60.731 47.619 0.30 0.00 0.00 3.72
2248 2794 0.913876 GCGCAACTCAACAACAACAC 59.086 50.000 0.30 0.00 0.00 3.32
2249 2795 0.522286 CGCGCAACTCAACAACAACA 60.522 50.000 8.75 0.00 0.00 3.33
2250 2796 0.522495 ACGCGCAACTCAACAACAAC 60.522 50.000 5.73 0.00 0.00 3.32
2251 2797 0.247894 GACGCGCAACTCAACAACAA 60.248 50.000 5.73 0.00 0.00 2.83
2252 2798 1.350319 GACGCGCAACTCAACAACA 59.650 52.632 5.73 0.00 0.00 3.33
2259 2805 3.764049 GACACCGACGCGCAACTC 61.764 66.667 5.73 0.00 0.00 3.01
2273 2819 1.135141 GTTTGCTGGTTGTGCTTGACA 60.135 47.619 0.00 0.00 0.00 3.58
2279 2825 2.230264 GCGTGTTTGCTGGTTGTGC 61.230 57.895 0.00 0.00 0.00 4.57
2280 2826 1.588667 GGCGTGTTTGCTGGTTGTG 60.589 57.895 0.00 0.00 34.52 3.33
2282 2828 2.353376 CGGCGTGTTTGCTGGTTG 60.353 61.111 0.00 0.00 37.59 3.77
2284 2830 2.972505 CTCGGCGTGTTTGCTGGT 60.973 61.111 6.85 0.00 41.67 4.00
2285 2831 2.664851 TCTCGGCGTGTTTGCTGG 60.665 61.111 6.85 0.00 41.67 4.85
2286 2832 1.771073 TTGTCTCGGCGTGTTTGCTG 61.771 55.000 6.85 0.00 42.75 4.41
2287 2833 1.498865 CTTGTCTCGGCGTGTTTGCT 61.499 55.000 6.85 0.00 34.52 3.91
2288 2834 1.082756 CTTGTCTCGGCGTGTTTGC 60.083 57.895 6.85 0.00 0.00 3.68
2289 2835 0.508641 CTCTTGTCTCGGCGTGTTTG 59.491 55.000 6.85 0.00 0.00 2.93
2290 2836 0.387929 TCTCTTGTCTCGGCGTGTTT 59.612 50.000 6.85 0.00 0.00 2.83
2303 2855 2.561569 ACACGTCCAAACCTTCTCTTG 58.438 47.619 0.00 0.00 0.00 3.02
2309 2861 1.011333 CGTCAACACGTCCAAACCTT 58.989 50.000 0.00 0.00 41.42 3.50
2316 2868 2.654912 CGCTTCCGTCAACACGTCC 61.655 63.158 0.00 0.00 45.17 4.79
2327 2879 2.049433 ACGACTTGGACGCTTCCG 60.049 61.111 4.57 0.00 46.37 4.30
2340 2892 4.357947 TCGCTGACCTGGCACGAC 62.358 66.667 0.00 0.00 0.00 4.34
2352 2904 1.000827 AGATAGATTCACGCCTCGCTG 60.001 52.381 0.00 0.00 0.00 5.18
2359 2911 8.723311 AGTAGTAGTATTCAGATAGATTCACGC 58.277 37.037 0.00 0.00 0.00 5.34
2367 2919 7.661127 AGCACGAGTAGTAGTATTCAGATAG 57.339 40.000 0.00 0.00 0.00 2.08
2368 2920 7.713942 TGAAGCACGAGTAGTAGTATTCAGATA 59.286 37.037 0.00 0.00 0.00 1.98
2369 2921 6.542735 TGAAGCACGAGTAGTAGTATTCAGAT 59.457 38.462 0.00 0.00 0.00 2.90
2370 2922 5.878669 TGAAGCACGAGTAGTAGTATTCAGA 59.121 40.000 0.00 0.00 0.00 3.27
2371 2923 6.120378 TGAAGCACGAGTAGTAGTATTCAG 57.880 41.667 0.00 0.00 0.00 3.02
2372 2924 5.066117 CCTGAAGCACGAGTAGTAGTATTCA 59.934 44.000 0.00 9.04 0.00 2.57
2373 2925 5.512473 CCTGAAGCACGAGTAGTAGTATTC 58.488 45.833 0.00 2.74 0.00 1.75
2374 2926 4.202030 GCCTGAAGCACGAGTAGTAGTATT 60.202 45.833 0.00 0.00 42.97 1.89
2375 2927 3.315749 GCCTGAAGCACGAGTAGTAGTAT 59.684 47.826 0.00 0.00 42.97 2.12
2376 2928 2.681848 GCCTGAAGCACGAGTAGTAGTA 59.318 50.000 0.00 0.00 42.97 1.82
2377 2929 1.473278 GCCTGAAGCACGAGTAGTAGT 59.527 52.381 0.00 0.00 42.97 2.73
2378 2930 1.202313 GGCCTGAAGCACGAGTAGTAG 60.202 57.143 0.00 0.00 46.50 2.57
2379 2931 0.815734 GGCCTGAAGCACGAGTAGTA 59.184 55.000 0.00 0.00 46.50 1.82
2380 2932 1.185618 TGGCCTGAAGCACGAGTAGT 61.186 55.000 3.32 0.00 46.50 2.73
2381 2933 0.037326 TTGGCCTGAAGCACGAGTAG 60.037 55.000 3.32 0.00 46.50 2.57
2382 2934 0.320421 GTTGGCCTGAAGCACGAGTA 60.320 55.000 3.32 0.00 46.50 2.59
2383 2935 1.598130 GTTGGCCTGAAGCACGAGT 60.598 57.895 3.32 0.00 46.50 4.18
2384 2936 0.037326 TAGTTGGCCTGAAGCACGAG 60.037 55.000 3.32 0.00 46.50 4.18
2385 2937 0.320421 GTAGTTGGCCTGAAGCACGA 60.320 55.000 3.32 0.00 46.50 4.35
2386 2938 0.602638 TGTAGTTGGCCTGAAGCACG 60.603 55.000 3.32 0.00 46.50 5.34
2387 2939 0.875059 GTGTAGTTGGCCTGAAGCAC 59.125 55.000 3.32 4.41 46.50 4.40
2388 2940 0.250727 GGTGTAGTTGGCCTGAAGCA 60.251 55.000 3.32 0.00 46.50 3.91
2389 2941 1.298859 CGGTGTAGTTGGCCTGAAGC 61.299 60.000 3.32 0.00 42.60 3.86
2390 2942 0.320374 TCGGTGTAGTTGGCCTGAAG 59.680 55.000 3.32 0.00 0.00 3.02
2391 2943 0.320374 CTCGGTGTAGTTGGCCTGAA 59.680 55.000 3.32 0.00 0.00 3.02
2392 2944 1.972198 CTCGGTGTAGTTGGCCTGA 59.028 57.895 3.32 0.00 0.00 3.86
2393 2945 1.741770 GCTCGGTGTAGTTGGCCTG 60.742 63.158 3.32 0.00 0.00 4.85
2394 2946 1.764571 TTGCTCGGTGTAGTTGGCCT 61.765 55.000 3.32 0.00 0.00 5.19
2395 2947 1.302192 TTGCTCGGTGTAGTTGGCC 60.302 57.895 0.00 0.00 0.00 5.36
2396 2948 0.602905 AGTTGCTCGGTGTAGTTGGC 60.603 55.000 0.00 0.00 0.00 4.52
2397 2949 1.000955 AGAGTTGCTCGGTGTAGTTGG 59.999 52.381 0.00 0.00 35.36 3.77
2398 2950 2.440539 AGAGTTGCTCGGTGTAGTTG 57.559 50.000 0.00 0.00 35.36 3.16
2399 2951 3.130693 GGATAGAGTTGCTCGGTGTAGTT 59.869 47.826 0.00 0.00 35.36 2.24
2400 2952 2.688958 GGATAGAGTTGCTCGGTGTAGT 59.311 50.000 0.00 0.00 35.36 2.73
2401 2953 2.952978 AGGATAGAGTTGCTCGGTGTAG 59.047 50.000 0.00 0.00 35.36 2.74
2402 2954 2.688446 CAGGATAGAGTTGCTCGGTGTA 59.312 50.000 0.00 0.00 35.36 2.90
2403 2955 1.478510 CAGGATAGAGTTGCTCGGTGT 59.521 52.381 0.00 0.00 35.36 4.16
2404 2956 1.478510 ACAGGATAGAGTTGCTCGGTG 59.521 52.381 0.00 0.00 35.36 4.94
2405 2957 1.853963 ACAGGATAGAGTTGCTCGGT 58.146 50.000 0.00 0.00 35.36 4.69
2406 2958 2.796383 CGAACAGGATAGAGTTGCTCGG 60.796 54.545 0.00 0.00 35.36 4.63
2407 2959 2.455032 CGAACAGGATAGAGTTGCTCG 58.545 52.381 0.00 0.00 35.36 5.03
2408 2960 2.197577 GCGAACAGGATAGAGTTGCTC 58.802 52.381 0.00 0.00 0.00 4.26
2409 2961 1.134670 GGCGAACAGGATAGAGTTGCT 60.135 52.381 0.00 0.00 0.00 3.91
2410 2962 1.291132 GGCGAACAGGATAGAGTTGC 58.709 55.000 0.00 0.00 0.00 4.17
2411 2963 1.473434 GGGGCGAACAGGATAGAGTTG 60.473 57.143 0.00 0.00 0.00 3.16
2412 2964 0.831307 GGGGCGAACAGGATAGAGTT 59.169 55.000 0.00 0.00 0.00 3.01
2413 2965 1.049289 GGGGGCGAACAGGATAGAGT 61.049 60.000 0.00 0.00 0.00 3.24
2414 2966 1.749033 GGGGGCGAACAGGATAGAG 59.251 63.158 0.00 0.00 0.00 2.43
2415 2967 2.131709 CGGGGGCGAACAGGATAGA 61.132 63.158 0.00 0.00 0.00 1.98
2416 2968 2.365095 GACGGGGGCGAACAGGATAG 62.365 65.000 0.00 0.00 0.00 2.08
2417 2969 2.364579 ACGGGGGCGAACAGGATA 60.365 61.111 0.00 0.00 0.00 2.59
2418 2970 3.782443 GACGGGGGCGAACAGGAT 61.782 66.667 0.00 0.00 0.00 3.24
2420 2972 4.760047 CAGACGGGGGCGAACAGG 62.760 72.222 0.00 0.00 0.00 4.00
2421 2973 3.530910 AACAGACGGGGGCGAACAG 62.531 63.158 0.00 0.00 0.00 3.16
2422 2974 3.109592 AAACAGACGGGGGCGAACA 62.110 57.895 0.00 0.00 0.00 3.18
2423 2975 2.281276 AAACAGACGGGGGCGAAC 60.281 61.111 0.00 0.00 0.00 3.95
2424 2976 2.281208 CAAACAGACGGGGGCGAA 60.281 61.111 0.00 0.00 0.00 4.70
2425 2977 4.323477 CCAAACAGACGGGGGCGA 62.323 66.667 0.00 0.00 0.00 5.54
2430 2982 1.883926 CTTTTACCCCAAACAGACGGG 59.116 52.381 0.00 0.00 43.05 5.28
2431 2983 1.883926 CCTTTTACCCCAAACAGACGG 59.116 52.381 0.00 0.00 0.00 4.79
2432 2984 1.883926 CCCTTTTACCCCAAACAGACG 59.116 52.381 0.00 0.00 0.00 4.18
2433 2985 2.889045 GTCCCTTTTACCCCAAACAGAC 59.111 50.000 0.00 0.00 0.00 3.51
2434 2986 2.514582 TGTCCCTTTTACCCCAAACAGA 59.485 45.455 0.00 0.00 0.00 3.41
2435 2987 2.952116 TGTCCCTTTTACCCCAAACAG 58.048 47.619 0.00 0.00 0.00 3.16
2436 2988 3.032459 GTTGTCCCTTTTACCCCAAACA 58.968 45.455 0.00 0.00 0.00 2.83
2437 2989 2.366266 GGTTGTCCCTTTTACCCCAAAC 59.634 50.000 0.00 0.00 0.00 2.93
2438 2990 2.680251 GGTTGTCCCTTTTACCCCAAA 58.320 47.619 0.00 0.00 0.00 3.28
2439 2991 1.479021 CGGTTGTCCCTTTTACCCCAA 60.479 52.381 0.00 0.00 0.00 4.12
2440 2992 0.110869 CGGTTGTCCCTTTTACCCCA 59.889 55.000 0.00 0.00 0.00 4.96
2441 2993 0.401356 TCGGTTGTCCCTTTTACCCC 59.599 55.000 0.00 0.00 0.00 4.95
2442 2994 1.348696 TCTCGGTTGTCCCTTTTACCC 59.651 52.381 0.00 0.00 0.00 3.69
2443 2995 2.420642 GTCTCGGTTGTCCCTTTTACC 58.579 52.381 0.00 0.00 0.00 2.85
2444 2996 2.064014 CGTCTCGGTTGTCCCTTTTAC 58.936 52.381 0.00 0.00 0.00 2.01
2445 2997 1.001181 CCGTCTCGGTTGTCCCTTTTA 59.999 52.381 0.00 0.00 42.73 1.52
2446 2998 0.250166 CCGTCTCGGTTGTCCCTTTT 60.250 55.000 0.00 0.00 42.73 2.27
2447 2999 1.370064 CCGTCTCGGTTGTCCCTTT 59.630 57.895 0.00 0.00 42.73 3.11
2448 3000 3.057337 CCGTCTCGGTTGTCCCTT 58.943 61.111 0.00 0.00 42.73 3.95
2474 3026 2.344521 AAAAGTCCGTTTGCACCCGC 62.345 55.000 0.00 0.00 39.24 6.13
2475 3027 0.593773 CAAAAGTCCGTTTGCACCCG 60.594 55.000 0.00 0.00 32.10 5.28
2476 3028 0.458260 ACAAAAGTCCGTTTGCACCC 59.542 50.000 5.75 0.00 41.33 4.61
2477 3029 1.535226 GGACAAAAGTCCGTTTGCACC 60.535 52.381 5.75 6.30 41.33 5.01
2478 3030 1.835121 GGACAAAAGTCCGTTTGCAC 58.165 50.000 5.75 1.78 41.33 4.57
2486 3038 1.070108 GTCGAAAGCGGACAAAAGTCC 60.070 52.381 4.59 4.59 40.04 3.85
2487 3039 1.070108 GGTCGAAAGCGGACAAAAGTC 60.070 52.381 0.00 0.00 38.28 3.01
2488 3040 0.942252 GGTCGAAAGCGGACAAAAGT 59.058 50.000 0.00 0.00 38.28 2.66
2489 3041 0.237498 GGGTCGAAAGCGGACAAAAG 59.763 55.000 0.00 0.00 38.28 2.27
2490 3042 0.464013 TGGGTCGAAAGCGGACAAAA 60.464 50.000 0.00 0.00 38.28 2.44
2491 3043 0.250553 ATGGGTCGAAAGCGGACAAA 60.251 50.000 0.00 0.00 38.28 2.83
2492 3044 0.672401 GATGGGTCGAAAGCGGACAA 60.672 55.000 0.00 0.00 38.28 3.18
2493 3045 1.079405 GATGGGTCGAAAGCGGACA 60.079 57.895 0.00 0.00 38.28 4.02
2494 3046 1.814169 GGATGGGTCGAAAGCGGAC 60.814 63.158 0.00 0.00 38.28 4.79
2495 3047 2.582436 GGATGGGTCGAAAGCGGA 59.418 61.111 0.00 0.00 38.28 5.54
2496 3048 2.513897 GGGATGGGTCGAAAGCGG 60.514 66.667 0.00 0.00 38.28 5.52
2497 3049 2.513897 GGGGATGGGTCGAAAGCG 60.514 66.667 0.00 0.00 39.35 4.68
2498 3050 2.513897 CGGGGATGGGTCGAAAGC 60.514 66.667 0.00 0.00 0.00 3.51
2499 3051 2.189521 CCGGGGATGGGTCGAAAG 59.810 66.667 0.00 0.00 0.00 2.62
2500 3052 4.104183 GCCGGGGATGGGTCGAAA 62.104 66.667 2.18 0.00 0.00 3.46
2507 3059 3.600410 AAACTTGGGCCGGGGATGG 62.600 63.158 2.18 0.00 0.00 3.51
2508 3060 2.037208 AAACTTGGGCCGGGGATG 59.963 61.111 2.18 0.00 0.00 3.51
2509 3061 2.037208 CAAACTTGGGCCGGGGAT 59.963 61.111 2.18 0.00 0.00 3.85
2510 3062 4.986708 GCAAACTTGGGCCGGGGA 62.987 66.667 2.18 0.00 0.00 4.81
2517 3069 4.038080 GACCGGCGCAAACTTGGG 62.038 66.667 10.83 2.32 43.22 4.12
2518 3070 4.038080 GGACCGGCGCAAACTTGG 62.038 66.667 10.83 2.92 0.00 3.61
2519 3071 4.038080 GGGACCGGCGCAAACTTG 62.038 66.667 10.83 0.00 0.00 3.16
2538 3090 4.839706 CAAATGGGCGGGGGAGGG 62.840 72.222 0.00 0.00 0.00 4.30
2539 3091 4.839706 CCAAATGGGCGGGGGAGG 62.840 72.222 0.00 0.00 0.00 4.30
2548 3100 1.153389 GGAAATGGCGCCAAATGGG 60.153 57.895 36.33 0.00 40.85 4.00
2549 3101 1.153389 GGGAAATGGCGCCAAATGG 60.153 57.895 36.33 0.00 38.53 3.16
2550 3102 1.153389 GGGGAAATGGCGCCAAATG 60.153 57.895 36.33 0.00 40.36 2.32
2551 3103 1.611851 TGGGGAAATGGCGCCAAAT 60.612 52.632 36.33 25.44 46.38 2.32
2552 3104 2.203699 TGGGGAAATGGCGCCAAA 60.204 55.556 36.33 12.16 46.38 3.28
2555 3107 2.264480 GTTTGGGGAAATGGCGCC 59.736 61.111 22.73 22.73 40.97 6.53
2556 3108 2.264480 GGTTTGGGGAAATGGCGC 59.736 61.111 0.00 0.00 0.00 6.53
2557 3109 1.604147 GAGGGTTTGGGGAAATGGCG 61.604 60.000 0.00 0.00 0.00 5.69
2558 3110 1.264749 GGAGGGTTTGGGGAAATGGC 61.265 60.000 0.00 0.00 0.00 4.40
2559 3111 0.617535 GGGAGGGTTTGGGGAAATGG 60.618 60.000 0.00 0.00 0.00 3.16
2560 3112 0.116143 TGGGAGGGTTTGGGGAAATG 59.884 55.000 0.00 0.00 0.00 2.32
2561 3113 0.116342 GTGGGAGGGTTTGGGGAAAT 59.884 55.000 0.00 0.00 0.00 2.17
2562 3114 1.544703 GTGGGAGGGTTTGGGGAAA 59.455 57.895 0.00 0.00 0.00 3.13
2563 3115 2.836187 CGTGGGAGGGTTTGGGGAA 61.836 63.158 0.00 0.00 0.00 3.97
2564 3116 3.253838 CGTGGGAGGGTTTGGGGA 61.254 66.667 0.00 0.00 0.00 4.81
2565 3117 3.562732 GACGTGGGAGGGTTTGGGG 62.563 68.421 0.00 0.00 0.00 4.96
2566 3118 2.033602 GACGTGGGAGGGTTTGGG 59.966 66.667 0.00 0.00 0.00 4.12
2567 3119 2.033602 GGACGTGGGAGGGTTTGG 59.966 66.667 0.00 0.00 0.00 3.28
2568 3120 2.033602 GGGACGTGGGAGGGTTTG 59.966 66.667 0.00 0.00 0.00 2.93
2569 3121 2.122099 AGGGACGTGGGAGGGTTT 60.122 61.111 0.00 0.00 0.00 3.27
2570 3122 2.606826 GAGGGACGTGGGAGGGTT 60.607 66.667 0.00 0.00 0.00 4.11
2571 3123 4.716977 GGAGGGACGTGGGAGGGT 62.717 72.222 0.00 0.00 0.00 4.34
2596 3148 4.862823 GACGGGGGAGAGAGGGGG 62.863 77.778 0.00 0.00 0.00 5.40
2597 3149 4.862823 GGACGGGGGAGAGAGGGG 62.863 77.778 0.00 0.00 0.00 4.79
2598 3150 3.396822 ATGGACGGGGGAGAGAGGG 62.397 68.421 0.00 0.00 0.00 4.30
2599 3151 2.136878 CATGGACGGGGGAGAGAGG 61.137 68.421 0.00 0.00 0.00 3.69
2600 3152 2.136878 CCATGGACGGGGGAGAGAG 61.137 68.421 5.56 0.00 0.00 3.20
2601 3153 2.041922 CCATGGACGGGGGAGAGA 60.042 66.667 5.56 0.00 0.00 3.10
2602 3154 2.365635 ACCATGGACGGGGGAGAG 60.366 66.667 21.47 0.00 0.00 3.20
2603 3155 2.365105 GACCATGGACGGGGGAGA 60.365 66.667 21.47 0.00 0.00 3.71
2604 3156 3.849951 CGACCATGGACGGGGGAG 61.850 72.222 25.97 0.00 0.00 4.30
2605 3157 4.385740 TCGACCATGGACGGGGGA 62.386 66.667 31.05 13.34 34.42 4.81
2606 3158 4.157120 GTCGACCATGGACGGGGG 62.157 72.222 31.05 8.42 34.42 5.40
2611 3163 4.832608 GGGGCGTCGACCATGGAC 62.833 72.222 21.19 12.21 27.52 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.