Multiple sequence alignment - TraesCS2D01G596300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G596300 chr2D 100.000 2949 0 0 1 2949 649378413 649375465 0.000000e+00 5446.0
1 TraesCS2D01G596300 chr2D 91.278 837 55 13 1102 1923 649388896 649389729 0.000000e+00 1125.0
2 TraesCS2D01G596300 chr2A 87.921 1871 143 47 774 2603 775358321 775360149 0.000000e+00 2126.0
3 TraesCS2D01G596300 chr2A 94.819 637 30 3 1115 1748 775308990 775308354 0.000000e+00 990.0
4 TraesCS2D01G596300 chr2A 83.766 770 52 30 1 728 775357578 775358316 0.000000e+00 662.0
5 TraesCS2D01G596300 chr2A 86.408 103 4 1 2665 2757 775360160 775360262 1.450000e-18 104.0
6 TraesCS2D01G596300 chr2B 91.350 1052 54 23 1090 2123 785230215 785229183 0.000000e+00 1404.0
7 TraesCS2D01G596300 chr2B 94.876 644 30 3 1105 1748 785238647 785239287 0.000000e+00 1003.0
8 TraesCS2D01G596300 chr2B 78.450 413 47 25 561 954 785230978 785230589 6.360000e-57 231.0
9 TraesCS2D01G596300 chr2B 89.881 168 17 0 1 168 785231837 785231670 1.780000e-52 217.0
10 TraesCS2D01G596300 chr3D 80.315 127 19 5 359 484 382803134 382803013 1.130000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G596300 chr2D 649375465 649378413 2948 True 5446.000000 5446 100.000000 1 2949 1 chr2D.!!$R1 2948
1 TraesCS2D01G596300 chr2D 649388896 649389729 833 False 1125.000000 1125 91.278000 1102 1923 1 chr2D.!!$F1 821
2 TraesCS2D01G596300 chr2A 775308354 775308990 636 True 990.000000 990 94.819000 1115 1748 1 chr2A.!!$R1 633
3 TraesCS2D01G596300 chr2A 775357578 775360262 2684 False 964.000000 2126 86.031667 1 2757 3 chr2A.!!$F1 2756
4 TraesCS2D01G596300 chr2B 785238647 785239287 640 False 1003.000000 1003 94.876000 1105 1748 1 chr2B.!!$F1 643
5 TraesCS2D01G596300 chr2B 785229183 785231837 2654 True 617.333333 1404 86.560333 1 2123 3 chr2B.!!$R1 2122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.104855 TGGATGTATCAGTCCGCAGC 59.895 55.0 0.0 0.0 37.32 5.25 F
741 1211 0.107165 GGCTACAACTCCACCATCCC 60.107 60.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 1548 0.173708 GGAGATTTGACGGCGAGAGT 59.826 55.0 16.62 0.0 0.0 3.24 R
2499 3308 0.106769 TCAGTTTCAGGCCAACAGCA 60.107 50.0 5.01 0.0 46.5 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.534357 ATCCATAGGAGATCTCGGTGT 57.466 47.619 16.46 2.09 34.05 4.16
107 108 2.959484 CGGAGCAAGAGAAGGCCCA 61.959 63.158 0.00 0.00 0.00 5.36
108 109 1.380302 GGAGCAAGAGAAGGCCCAA 59.620 57.895 0.00 0.00 0.00 4.12
120 121 0.709992 AGGCCCAAGGATAAAAGCCA 59.290 50.000 0.00 0.00 42.97 4.75
122 123 2.118679 GGCCCAAGGATAAAAGCCAAT 58.881 47.619 0.00 0.00 40.20 3.16
131 132 7.373493 CAAGGATAAAAGCCAATGGATGTATC 58.627 38.462 2.05 8.13 0.00 2.24
137 138 2.146342 GCCAATGGATGTATCAGTCCG 58.854 52.381 2.05 0.00 37.32 4.79
141 142 0.104855 TGGATGTATCAGTCCGCAGC 59.895 55.000 0.00 0.00 37.32 5.25
171 172 1.980232 ACAGCATGCCCATGTGTGG 60.980 57.895 15.66 0.00 42.53 4.17
190 191 1.524621 CATGATGGAGGACGTGGCC 60.525 63.158 0.00 0.00 0.00 5.36
240 241 7.072177 TGTGAGGAATATGAAACACGAATTC 57.928 36.000 0.00 0.00 0.00 2.17
243 244 6.093495 TGAGGAATATGAAACACGAATTCCAC 59.907 38.462 13.29 8.48 45.27 4.02
280 281 2.074099 TGGCAACATAGGCAGACCA 58.926 52.632 0.00 0.00 46.17 4.02
288 289 2.840038 ACATAGGCAGACCAAGATGTCA 59.160 45.455 0.00 0.00 39.06 3.58
298 299 5.122869 CAGACCAAGATGTCACATTTGTAGG 59.877 44.000 0.00 0.00 37.73 3.18
299 300 4.985538 ACCAAGATGTCACATTTGTAGGT 58.014 39.130 0.00 0.00 0.00 3.08
302 303 6.173339 CCAAGATGTCACATTTGTAGGTACT 58.827 40.000 0.00 0.00 46.37 2.73
461 510 2.380084 TGCGGTTAGTTGGATCAGAC 57.620 50.000 0.00 0.00 0.00 3.51
465 514 2.236395 CGGTTAGTTGGATCAGACCCTT 59.764 50.000 0.00 0.00 0.00 3.95
467 516 4.081309 CGGTTAGTTGGATCAGACCCTTTA 60.081 45.833 0.00 0.00 0.00 1.85
531 956 1.003545 CGATTAGGCGACATTTGGCAG 60.004 52.381 0.00 0.00 0.00 4.85
538 963 1.469767 GCGACATTTGGCAGGAAATCC 60.470 52.381 0.00 0.00 0.00 3.01
553 978 1.816074 AATCCGGCACACATAAACGT 58.184 45.000 0.00 0.00 0.00 3.99
554 979 1.816074 ATCCGGCACACATAAACGTT 58.184 45.000 0.00 0.00 0.00 3.99
557 982 0.727793 CGGCACACATAAACGTTGGC 60.728 55.000 0.00 0.00 0.00 4.52
559 984 1.404477 GCACACATAAACGTTGGCAC 58.596 50.000 0.00 0.00 0.00 5.01
651 1113 1.212455 GCCAAAGGAAACAAACGGCG 61.212 55.000 4.80 4.80 0.00 6.46
684 1150 2.738521 GCCGTGCGCTTCTTGAGA 60.739 61.111 9.73 0.00 0.00 3.27
685 1151 3.016474 GCCGTGCGCTTCTTGAGAC 62.016 63.158 9.73 0.00 0.00 3.36
686 1152 2.383527 CCGTGCGCTTCTTGAGACC 61.384 63.158 9.73 0.00 0.00 3.85
687 1153 1.373497 CGTGCGCTTCTTGAGACCT 60.373 57.895 9.73 0.00 0.00 3.85
688 1154 1.347817 CGTGCGCTTCTTGAGACCTC 61.348 60.000 9.73 0.00 0.00 3.85
689 1155 1.016653 GTGCGCTTCTTGAGACCTCC 61.017 60.000 9.73 0.00 0.00 4.30
690 1156 1.448717 GCGCTTCTTGAGACCTCCC 60.449 63.158 0.00 0.00 0.00 4.30
691 1157 1.975327 CGCTTCTTGAGACCTCCCA 59.025 57.895 0.00 0.00 0.00 4.37
739 1209 0.249398 ACGGCTACAACTCCACCATC 59.751 55.000 0.00 0.00 0.00 3.51
740 1210 0.462047 CGGCTACAACTCCACCATCC 60.462 60.000 0.00 0.00 0.00 3.51
741 1211 0.107165 GGCTACAACTCCACCATCCC 60.107 60.000 0.00 0.00 0.00 3.85
742 1212 0.618458 GCTACAACTCCACCATCCCA 59.382 55.000 0.00 0.00 0.00 4.37
743 1213 1.004277 GCTACAACTCCACCATCCCAA 59.996 52.381 0.00 0.00 0.00 4.12
744 1214 2.711542 CTACAACTCCACCATCCCAAC 58.288 52.381 0.00 0.00 0.00 3.77
746 1216 0.611896 CAACTCCACCATCCCAACCC 60.612 60.000 0.00 0.00 0.00 4.11
748 1218 2.121275 TCCACCATCCCAACCCCA 60.121 61.111 0.00 0.00 0.00 4.96
749 1219 2.037208 CCACCATCCCAACCCCAC 59.963 66.667 0.00 0.00 0.00 4.61
750 1220 2.850290 CACCATCCCAACCCCACA 59.150 61.111 0.00 0.00 0.00 4.17
751 1221 1.154921 CACCATCCCAACCCCACAA 59.845 57.895 0.00 0.00 0.00 3.33
752 1222 0.470833 CACCATCCCAACCCCACAAA 60.471 55.000 0.00 0.00 0.00 2.83
753 1223 0.178935 ACCATCCCAACCCCACAAAG 60.179 55.000 0.00 0.00 0.00 2.77
754 1224 0.904394 CCATCCCAACCCCACAAAGG 60.904 60.000 0.00 0.00 37.03 3.11
755 1225 1.229177 ATCCCAACCCCACAAAGGC 60.229 57.895 0.00 0.00 35.39 4.35
757 1227 2.123077 CCAACCCCACAAAGGCCA 60.123 61.111 5.01 0.00 35.39 5.36
758 1228 2.209315 CCAACCCCACAAAGGCCAG 61.209 63.158 5.01 0.00 35.39 4.85
817 1304 0.565674 ACCTCCACCCAACCCAAAAT 59.434 50.000 0.00 0.00 0.00 1.82
839 1326 0.109827 TGCACAAATCACCGCGATTG 60.110 50.000 8.23 4.15 43.83 2.67
840 1327 1.405469 GCACAAATCACCGCGATTGC 61.405 55.000 8.23 0.00 43.83 3.56
845 1332 0.464373 AATCACCGCGATTGCCATCT 60.464 50.000 8.23 0.00 42.95 2.90
853 1340 1.677576 GCGATTGCCATCTCAAATCCA 59.322 47.619 0.00 0.00 33.98 3.41
854 1341 2.287427 GCGATTGCCATCTCAAATCCAG 60.287 50.000 0.00 0.00 33.98 3.86
874 1361 3.381272 CAGCCAAAACTCACAAGGAAGAA 59.619 43.478 0.00 0.00 0.00 2.52
884 1371 2.293122 CACAAGGAAGAAAATCCACGCA 59.707 45.455 0.00 0.00 42.27 5.24
891 1378 4.545610 GAAGAAAATCCACGCACAATCAA 58.454 39.130 0.00 0.00 0.00 2.57
893 1380 2.352503 AAATCCACGCACAATCAAGC 57.647 45.000 0.00 0.00 0.00 4.01
900 1387 0.731514 CGCACAATCAAGCCAAGCAG 60.732 55.000 0.00 0.00 0.00 4.24
905 1392 0.606604 AATCAAGCCAAGCAGCAAGG 59.393 50.000 0.00 0.00 34.23 3.61
906 1393 1.255667 ATCAAGCCAAGCAGCAAGGG 61.256 55.000 0.00 0.00 34.23 3.95
909 1396 2.034687 GCCAAGCAGCAAGGGAGA 59.965 61.111 0.00 0.00 0.00 3.71
910 1397 2.045131 GCCAAGCAGCAAGGGAGAG 61.045 63.158 0.00 0.00 0.00 3.20
911 1398 1.377994 CCAAGCAGCAAGGGAGAGT 59.622 57.895 0.00 0.00 0.00 3.24
912 1399 0.676151 CCAAGCAGCAAGGGAGAGTC 60.676 60.000 0.00 0.00 0.00 3.36
913 1400 1.018226 CAAGCAGCAAGGGAGAGTCG 61.018 60.000 0.00 0.00 0.00 4.18
914 1401 1.476007 AAGCAGCAAGGGAGAGTCGT 61.476 55.000 0.00 0.00 0.00 4.34
915 1402 1.446966 GCAGCAAGGGAGAGTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
916 1403 1.153939 CAGCAAGGGAGAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
917 1404 2.507324 GCAAGGGAGAGTCGTCGC 60.507 66.667 0.00 0.00 0.00 5.19
919 1406 2.035940 AAGGGAGAGTCGTCGCCT 59.964 61.111 0.00 0.00 42.20 5.52
924 1413 4.361971 AGAGTCGTCGCCTCCCCA 62.362 66.667 0.00 0.00 0.00 4.96
958 1447 2.021318 TACCCAACCCAACCCAACCC 62.021 60.000 0.00 0.00 0.00 4.11
959 1448 2.283809 CCAACCCAACCCAACCCA 59.716 61.111 0.00 0.00 0.00 4.51
960 1449 1.383248 CCAACCCAACCCAACCCAA 60.383 57.895 0.00 0.00 0.00 4.12
961 1450 1.691195 CCAACCCAACCCAACCCAAC 61.691 60.000 0.00 0.00 0.00 3.77
963 1452 2.915137 CCCAACCCAACCCAACCG 60.915 66.667 0.00 0.00 0.00 4.44
965 1454 3.972276 CAACCCAACCCAACCGCG 61.972 66.667 0.00 0.00 0.00 6.46
966 1455 4.509580 AACCCAACCCAACCGCGT 62.510 61.111 4.92 0.00 0.00 6.01
967 1456 4.941309 ACCCAACCCAACCGCGTC 62.941 66.667 4.92 0.00 0.00 5.19
969 1458 3.353836 CCAACCCAACCGCGTCAG 61.354 66.667 4.92 0.00 0.00 3.51
970 1459 2.590575 CAACCCAACCGCGTCAGT 60.591 61.111 4.92 0.00 0.00 3.41
971 1460 2.280592 AACCCAACCGCGTCAGTC 60.281 61.111 4.92 0.00 0.00 3.51
972 1461 3.819877 AACCCAACCGCGTCAGTCC 62.820 63.158 4.92 0.00 0.00 3.85
1003 1494 3.572661 TCCCCTACTTATATCCCACCC 57.427 52.381 0.00 0.00 0.00 4.61
1004 1495 2.185387 CCCCTACTTATATCCCACCCG 58.815 57.143 0.00 0.00 0.00 5.28
1005 1496 1.553704 CCCTACTTATATCCCACCCGC 59.446 57.143 0.00 0.00 0.00 6.13
1034 1525 2.038295 GCCACAAATCACCCAAATCCAA 59.962 45.455 0.00 0.00 0.00 3.53
1035 1526 3.307621 GCCACAAATCACCCAAATCCAAT 60.308 43.478 0.00 0.00 0.00 3.16
1041 1532 1.430853 TCACCCAAATCCAATCCACCA 59.569 47.619 0.00 0.00 0.00 4.17
1042 1533 1.826720 CACCCAAATCCAATCCACCAG 59.173 52.381 0.00 0.00 0.00 4.00
1043 1534 1.273211 ACCCAAATCCAATCCACCAGG 60.273 52.381 0.00 0.00 0.00 4.45
1044 1535 0.826062 CCAAATCCAATCCACCAGGC 59.174 55.000 0.00 0.00 33.74 4.85
1045 1536 0.826062 CAAATCCAATCCACCAGGCC 59.174 55.000 0.00 0.00 33.74 5.19
1046 1537 0.413037 AAATCCAATCCACCAGGCCA 59.587 50.000 5.01 0.00 33.74 5.36
1048 1539 2.228841 ATCCAATCCACCAGGCCACC 62.229 60.000 5.01 0.00 33.74 4.61
1049 1540 2.440147 CAATCCACCAGGCCACCA 59.560 61.111 5.01 0.00 33.74 4.17
1050 1541 1.228831 CAATCCACCAGGCCACCAA 60.229 57.895 5.01 0.00 33.74 3.67
1051 1542 0.615544 CAATCCACCAGGCCACCAAT 60.616 55.000 5.01 0.00 33.74 3.16
1054 1545 1.984026 CCACCAGGCCACCAATTCC 60.984 63.158 5.01 0.00 0.00 3.01
1057 1548 2.444696 CAGGCCACCAATTCCCCA 59.555 61.111 5.01 0.00 0.00 4.96
1059 1550 2.169810 AGGCCACCAATTCCCCACT 61.170 57.895 5.01 0.00 0.00 4.00
1060 1551 1.682344 GGCCACCAATTCCCCACTC 60.682 63.158 0.00 0.00 0.00 3.51
1061 1552 1.384191 GCCACCAATTCCCCACTCT 59.616 57.895 0.00 0.00 0.00 3.24
1065 1779 1.452108 CCAATTCCCCACTCTCGCC 60.452 63.158 0.00 0.00 0.00 5.54
1067 1781 2.291043 AATTCCCCACTCTCGCCGT 61.291 57.895 0.00 0.00 0.00 5.68
1069 1783 4.671590 TCCCCACTCTCGCCGTCA 62.672 66.667 0.00 0.00 0.00 4.35
1074 1789 0.108615 CCACTCTCGCCGTCAAATCT 60.109 55.000 0.00 0.00 0.00 2.40
1089 1804 0.641601 AATCTCCCTCAGCTCCTCCT 59.358 55.000 0.00 0.00 0.00 3.69
1690 2420 3.756783 CTCTCCCTCCCCGTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
1757 2492 2.912295 TGGTTCTGATTCTCCACCATCA 59.088 45.455 0.00 0.00 32.38 3.07
1781 2516 1.369625 GATTCGATTCCTTGGTGCGT 58.630 50.000 0.00 0.00 0.00 5.24
1823 2566 5.937187 TGATCTCATCTCTCGATTCGATTC 58.063 41.667 9.54 0.00 34.61 2.52
1825 2568 4.058817 TCTCATCTCTCGATTCGATTCGA 58.941 43.478 25.55 25.55 45.27 3.71
1953 2740 4.310769 AGCTTTGCACATACTATCGATCC 58.689 43.478 0.00 0.00 0.00 3.36
1993 2780 3.055819 TGGTTCTTTGCTAGCAGGAGTAG 60.056 47.826 18.45 11.18 0.00 2.57
1996 2783 4.985538 TCTTTGCTAGCAGGAGTAGTAC 57.014 45.455 18.45 0.00 0.00 2.73
2045 2835 8.736244 GTTGCGTATATTGGTTATATTGGGATT 58.264 33.333 0.00 0.00 31.80 3.01
2075 2865 9.355215 CCTACTATTCGACCATTGTTGATATAC 57.645 37.037 0.00 0.00 34.81 1.47
2123 2916 2.483106 CAGACTCTGCTGTTGGATTGTG 59.517 50.000 0.00 0.00 0.00 3.33
2148 2945 7.169813 TGTCTGTTGATATATTCATGCTCGTTC 59.830 37.037 0.00 0.00 33.34 3.95
2151 2948 6.143919 TGTTGATATATTCATGCTCGTTCGTC 59.856 38.462 0.00 0.00 33.34 4.20
2168 2965 2.009774 CGTCCATCGCAATTTCTTCCT 58.990 47.619 0.00 0.00 0.00 3.36
2179 2976 4.619160 GCAATTTCTTCCTGAACCATGACC 60.619 45.833 0.00 0.00 33.88 4.02
2193 2990 2.357637 CCATGACCAACTTTTCGTGTGT 59.642 45.455 0.00 0.00 0.00 3.72
2194 2991 3.362295 CATGACCAACTTTTCGTGTGTG 58.638 45.455 0.00 0.00 0.00 3.82
2195 2992 2.428491 TGACCAACTTTTCGTGTGTGT 58.572 42.857 0.00 0.00 0.00 3.72
2206 3003 2.633488 TCGTGTGTGTTGACCAAATCA 58.367 42.857 0.00 0.00 34.65 2.57
2207 3004 2.611751 TCGTGTGTGTTGACCAAATCAG 59.388 45.455 0.00 0.00 38.99 2.90
2221 3018 1.877576 AATCAGCACGGCAGTCGAGA 61.878 55.000 0.00 0.00 42.43 4.04
2222 3019 2.276863 ATCAGCACGGCAGTCGAGAG 62.277 60.000 0.00 0.00 42.43 3.20
2223 3020 4.427661 AGCACGGCAGTCGAGAGC 62.428 66.667 0.00 1.87 42.43 4.09
2226 3023 2.986413 ACGGCAGTCGAGAGCAGT 60.986 61.111 0.00 9.66 42.43 4.40
2227 3024 2.259818 CGGCAGTCGAGAGCAGTT 59.740 61.111 10.75 0.00 42.43 3.16
2228 3025 1.373497 CGGCAGTCGAGAGCAGTTT 60.373 57.895 10.75 0.00 42.43 2.66
2232 3031 2.417379 GGCAGTCGAGAGCAGTTTGATA 60.417 50.000 10.75 0.00 0.00 2.15
2250 3049 3.438781 TGATAATTTCGCACGAAAAGCCT 59.561 39.130 20.60 9.36 45.60 4.58
2349 3151 0.958822 AGCCCATGTGTTTTCCGTTC 59.041 50.000 0.00 0.00 0.00 3.95
2358 3160 3.754323 TGTGTTTTCCGTTCTTCAGTTGT 59.246 39.130 0.00 0.00 0.00 3.32
2361 3163 2.031258 TTCCGTTCTTCAGTTGTGCA 57.969 45.000 0.00 0.00 0.00 4.57
2366 3168 1.873591 GTTCTTCAGTTGTGCATCGGT 59.126 47.619 0.00 0.00 0.00 4.69
2370 3172 0.943835 TCAGTTGTGCATCGGTGTCG 60.944 55.000 0.00 0.00 37.82 4.35
2381 3183 1.081892 TCGGTGTCGACTACAGTAGC 58.918 55.000 17.92 3.74 40.88 3.58
2395 3204 0.666577 AGTAGCAAACACGCCGAGAC 60.667 55.000 0.00 0.00 0.00 3.36
2417 3226 0.514691 GAGCAGGTTTCGAGCAGTTG 59.485 55.000 0.00 0.00 0.00 3.16
2418 3227 0.106708 AGCAGGTTTCGAGCAGTTGA 59.893 50.000 0.00 0.00 0.00 3.18
2419 3228 0.235926 GCAGGTTTCGAGCAGTTGAC 59.764 55.000 0.00 0.00 0.00 3.18
2432 3241 0.600255 AGTTGACGGAAGCGTCCAAG 60.600 55.000 19.13 5.78 45.26 3.61
2434 3243 0.878523 TTGACGGAAGCGTCCAAGTG 60.879 55.000 19.13 4.68 45.26 3.16
2451 3260 1.837051 TGGAACCAGGTCAGCGAGT 60.837 57.895 0.00 0.00 0.00 4.18
2459 3268 0.171455 AGGTCAGCGAGTCGTGAATC 59.829 55.000 15.08 11.41 0.00 2.52
2499 3308 3.634072 GCGCGCGCTCTGAATGAT 61.634 61.111 44.38 0.00 38.26 2.45
2513 3322 1.820519 GAATGATGCTGTTGGCCTGAA 59.179 47.619 3.32 0.00 40.92 3.02
2518 3327 0.106769 TGCTGTTGGCCTGAAACTGA 60.107 50.000 3.32 0.00 40.92 3.41
2519 3328 0.595095 GCTGTTGGCCTGAAACTGAG 59.405 55.000 3.32 0.00 34.27 3.35
2531 3340 4.301628 CTGAAACTGAGAACCAATTTGGC 58.698 43.478 15.49 0.11 42.67 4.52
2566 3375 2.416836 CGAACGAGATTAAGTGGCTCCA 60.417 50.000 0.00 0.00 0.00 3.86
2603 3412 2.271821 CCGTGGTGGATGGATGCA 59.728 61.111 0.00 0.00 42.00 3.96
2604 3413 1.820906 CCGTGGTGGATGGATGCAG 60.821 63.158 0.00 0.00 42.00 4.41
2605 3414 1.221566 CGTGGTGGATGGATGCAGA 59.778 57.895 0.00 0.00 0.00 4.26
2608 3417 0.697658 TGGTGGATGGATGCAGACAA 59.302 50.000 0.00 0.00 0.00 3.18
2609 3418 1.075212 TGGTGGATGGATGCAGACAAA 59.925 47.619 0.00 0.00 0.00 2.83
2610 3419 2.291735 TGGTGGATGGATGCAGACAAAT 60.292 45.455 0.00 0.00 0.00 2.32
2611 3420 2.762327 GGTGGATGGATGCAGACAAATT 59.238 45.455 0.00 0.00 0.00 1.82
2612 3421 3.429822 GGTGGATGGATGCAGACAAATTG 60.430 47.826 0.00 0.00 0.00 2.32
2613 3422 3.444742 GTGGATGGATGCAGACAAATTGA 59.555 43.478 0.00 0.00 0.00 2.57
2614 3423 4.082081 GTGGATGGATGCAGACAAATTGAA 60.082 41.667 0.00 0.00 0.00 2.69
2615 3424 4.158949 TGGATGGATGCAGACAAATTGAAG 59.841 41.667 0.00 0.00 0.00 3.02
2616 3425 4.441079 GGATGGATGCAGACAAATTGAAGG 60.441 45.833 0.00 0.00 0.00 3.46
2617 3426 3.765381 TGGATGCAGACAAATTGAAGGA 58.235 40.909 0.00 0.00 0.00 3.36
2618 3427 4.346730 TGGATGCAGACAAATTGAAGGAT 58.653 39.130 0.00 0.00 0.00 3.24
2619 3428 4.400251 TGGATGCAGACAAATTGAAGGATC 59.600 41.667 0.00 5.20 0.00 3.36
2620 3429 4.400251 GGATGCAGACAAATTGAAGGATCA 59.600 41.667 0.00 0.00 0.00 2.92
2621 3430 5.068723 GGATGCAGACAAATTGAAGGATCAT 59.931 40.000 0.00 0.00 34.96 2.45
2622 3431 5.319140 TGCAGACAAATTGAAGGATCATG 57.681 39.130 0.00 0.00 34.96 3.07
2623 3432 4.110482 GCAGACAAATTGAAGGATCATGC 58.890 43.478 0.00 0.00 34.96 4.06
2624 3433 4.381185 GCAGACAAATTGAAGGATCATGCA 60.381 41.667 0.00 0.00 33.76 3.96
2625 3434 5.100259 CAGACAAATTGAAGGATCATGCAC 58.900 41.667 0.00 0.00 34.96 4.57
2626 3435 4.768448 AGACAAATTGAAGGATCATGCACA 59.232 37.500 0.00 0.00 34.96 4.57
2627 3436 5.068234 ACAAATTGAAGGATCATGCACAG 57.932 39.130 0.00 0.00 34.96 3.66
2628 3437 4.525487 ACAAATTGAAGGATCATGCACAGT 59.475 37.500 0.00 0.00 34.96 3.55
2629 3438 5.011329 ACAAATTGAAGGATCATGCACAGTT 59.989 36.000 0.00 0.00 34.96 3.16
2630 3439 4.713824 ATTGAAGGATCATGCACAGTTG 57.286 40.909 0.00 0.00 34.96 3.16
2631 3440 3.144657 TGAAGGATCATGCACAGTTGT 57.855 42.857 0.00 0.00 0.00 3.32
2632 3441 4.284829 TGAAGGATCATGCACAGTTGTA 57.715 40.909 0.00 0.00 0.00 2.41
2633 3442 4.847198 TGAAGGATCATGCACAGTTGTAT 58.153 39.130 0.00 0.00 0.00 2.29
2634 3443 5.988287 TGAAGGATCATGCACAGTTGTATA 58.012 37.500 0.00 0.00 0.00 1.47
2635 3444 6.051074 TGAAGGATCATGCACAGTTGTATAG 58.949 40.000 0.00 0.00 0.00 1.31
2636 3445 4.384056 AGGATCATGCACAGTTGTATAGC 58.616 43.478 0.00 0.00 0.00 2.97
2637 3446 4.129380 GGATCATGCACAGTTGTATAGCA 58.871 43.478 0.00 0.00 39.79 3.49
2638 3447 4.212847 GGATCATGCACAGTTGTATAGCAG 59.787 45.833 0.00 0.00 38.75 4.24
2639 3448 2.938451 TCATGCACAGTTGTATAGCAGC 59.062 45.455 0.00 0.00 38.75 5.25
2640 3449 1.737838 TGCACAGTTGTATAGCAGCC 58.262 50.000 0.00 0.00 0.00 4.85
2641 3450 1.003003 TGCACAGTTGTATAGCAGCCA 59.997 47.619 0.00 0.00 0.00 4.75
2642 3451 1.667724 GCACAGTTGTATAGCAGCCAG 59.332 52.381 0.00 0.00 0.00 4.85
2643 3452 1.667724 CACAGTTGTATAGCAGCCAGC 59.332 52.381 0.00 0.00 46.19 4.85
2722 3541 1.080366 GCACATGGTACCGTCGACA 60.080 57.895 17.16 0.00 0.00 4.35
2734 3553 3.982829 TCGACACGACAGAGGAGG 58.017 61.111 0.00 0.00 0.00 4.30
2757 3576 7.381744 GGAATACGTCCGTGTAAATTACTAC 57.618 40.000 4.67 1.09 36.40 2.73
2758 3577 7.196331 GGAATACGTCCGTGTAAATTACTACT 58.804 38.462 4.67 0.00 36.40 2.57
2759 3578 8.342634 GGAATACGTCCGTGTAAATTACTACTA 58.657 37.037 4.67 0.00 36.40 1.82
2760 3579 9.716507 GAATACGTCCGTGTAAATTACTACTAA 57.283 33.333 4.67 0.00 0.00 2.24
2761 3580 9.503427 AATACGTCCGTGTAAATTACTACTAAC 57.497 33.333 4.67 0.00 0.00 2.34
2762 3581 7.145932 ACGTCCGTGTAAATTACTACTAACT 57.854 36.000 4.67 0.00 0.00 2.24
2763 3582 7.244192 ACGTCCGTGTAAATTACTACTAACTC 58.756 38.462 4.67 0.00 0.00 3.01
2764 3583 6.688813 CGTCCGTGTAAATTACTACTAACTCC 59.311 42.308 4.67 0.00 0.00 3.85
2765 3584 7.414540 CGTCCGTGTAAATTACTACTAACTCCT 60.415 40.741 4.67 0.00 0.00 3.69
2766 3585 8.246871 GTCCGTGTAAATTACTACTAACTCCTT 58.753 37.037 4.67 0.00 0.00 3.36
2767 3586 8.462016 TCCGTGTAAATTACTACTAACTCCTTC 58.538 37.037 4.67 0.00 0.00 3.46
2768 3587 8.246180 CCGTGTAAATTACTACTAACTCCTTCA 58.754 37.037 4.67 0.00 0.00 3.02
2769 3588 9.070149 CGTGTAAATTACTACTAACTCCTTCAC 57.930 37.037 4.67 0.00 0.00 3.18
2770 3589 9.918630 GTGTAAATTACTACTAACTCCTTCACA 57.081 33.333 4.67 0.00 0.00 3.58
2819 3638 4.661993 TTTGTGTCGATTCAGATTTCGG 57.338 40.909 0.00 0.00 36.08 4.30
2820 3639 1.999735 TGTGTCGATTCAGATTTCGGC 59.000 47.619 0.00 1.84 40.25 5.54
2821 3640 1.999735 GTGTCGATTCAGATTTCGGCA 59.000 47.619 6.50 6.50 46.56 5.69
2822 3641 1.999735 TGTCGATTCAGATTTCGGCAC 59.000 47.619 6.50 0.00 44.20 5.01
2823 3642 1.327764 GTCGATTCAGATTTCGGCACC 59.672 52.381 3.64 0.00 39.64 5.01
2824 3643 0.301687 CGATTCAGATTTCGGCACCG 59.698 55.000 1.73 1.73 41.35 4.94
2825 3644 1.369625 GATTCAGATTTCGGCACCGT 58.630 50.000 9.23 0.00 40.74 4.83
2826 3645 1.737793 GATTCAGATTTCGGCACCGTT 59.262 47.619 9.23 0.00 40.74 4.44
2827 3646 2.459060 TTCAGATTTCGGCACCGTTA 57.541 45.000 9.23 0.00 40.74 3.18
2828 3647 1.717194 TCAGATTTCGGCACCGTTAC 58.283 50.000 9.23 0.22 40.74 2.50
2829 3648 0.725117 CAGATTTCGGCACCGTTACC 59.275 55.000 9.23 0.00 40.74 2.85
2834 3653 3.107661 CGGCACCGTTACCGTGAC 61.108 66.667 7.94 3.90 44.46 3.67
2835 3654 2.029369 GGCACCGTTACCGTGACA 59.971 61.111 7.94 0.00 0.00 3.58
2836 3655 1.375013 GGCACCGTTACCGTGACAT 60.375 57.895 7.94 0.00 0.00 3.06
2837 3656 1.632046 GGCACCGTTACCGTGACATG 61.632 60.000 7.94 0.00 0.00 3.21
2838 3657 0.947180 GCACCGTTACCGTGACATGT 60.947 55.000 0.00 0.00 0.00 3.21
2839 3658 0.787787 CACCGTTACCGTGACATGTG 59.212 55.000 1.15 0.00 0.00 3.21
2840 3659 0.390124 ACCGTTACCGTGACATGTGT 59.610 50.000 1.15 0.00 0.00 3.72
2841 3660 0.787787 CCGTTACCGTGACATGTGTG 59.212 55.000 1.15 0.00 0.00 3.82
2842 3661 0.162933 CGTTACCGTGACATGTGTGC 59.837 55.000 1.15 0.00 0.00 4.57
2843 3662 1.508632 GTTACCGTGACATGTGTGCT 58.491 50.000 1.15 0.00 0.00 4.40
2844 3663 2.679450 GTTACCGTGACATGTGTGCTA 58.321 47.619 1.15 0.00 0.00 3.49
2845 3664 3.061322 GTTACCGTGACATGTGTGCTAA 58.939 45.455 1.15 0.00 0.00 3.09
2846 3665 2.248280 ACCGTGACATGTGTGCTAAA 57.752 45.000 1.15 0.00 0.00 1.85
2847 3666 2.566913 ACCGTGACATGTGTGCTAAAA 58.433 42.857 1.15 0.00 0.00 1.52
2848 3667 3.146066 ACCGTGACATGTGTGCTAAAAT 58.854 40.909 1.15 0.00 0.00 1.82
2849 3668 4.320023 ACCGTGACATGTGTGCTAAAATA 58.680 39.130 1.15 0.00 0.00 1.40
2850 3669 4.757657 ACCGTGACATGTGTGCTAAAATAA 59.242 37.500 1.15 0.00 0.00 1.40
2851 3670 5.414454 ACCGTGACATGTGTGCTAAAATAAT 59.586 36.000 1.15 0.00 0.00 1.28
2852 3671 6.596106 ACCGTGACATGTGTGCTAAAATAATA 59.404 34.615 1.15 0.00 0.00 0.98
2853 3672 6.905076 CCGTGACATGTGTGCTAAAATAATAC 59.095 38.462 1.15 0.00 0.00 1.89
2854 3673 6.623353 CGTGACATGTGTGCTAAAATAATACG 59.377 38.462 1.15 0.00 0.00 3.06
2855 3674 6.905076 GTGACATGTGTGCTAAAATAATACGG 59.095 38.462 1.15 0.00 0.00 4.02
2856 3675 5.816919 ACATGTGTGCTAAAATAATACGGC 58.183 37.500 0.00 0.00 0.00 5.68
2857 3676 5.588648 ACATGTGTGCTAAAATAATACGGCT 59.411 36.000 0.00 0.00 0.00 5.52
2858 3677 6.764085 ACATGTGTGCTAAAATAATACGGCTA 59.236 34.615 0.00 0.00 0.00 3.93
2859 3678 6.838198 TGTGTGCTAAAATAATACGGCTAG 57.162 37.500 0.00 0.00 0.00 3.42
2860 3679 6.342906 TGTGTGCTAAAATAATACGGCTAGT 58.657 36.000 0.00 0.00 0.00 2.57
2861 3680 7.490840 TGTGTGCTAAAATAATACGGCTAGTA 58.509 34.615 0.00 0.00 40.03 1.82
2876 3695 9.856488 ATACGGCTAGTATTTATATGTTGTCAG 57.144 33.333 0.00 0.00 43.12 3.51
2877 3696 7.948357 ACGGCTAGTATTTATATGTTGTCAGA 58.052 34.615 0.00 0.00 0.00 3.27
2878 3697 8.418662 ACGGCTAGTATTTATATGTTGTCAGAA 58.581 33.333 0.00 0.00 0.00 3.02
2879 3698 8.700644 CGGCTAGTATTTATATGTTGTCAGAAC 58.299 37.037 0.00 0.00 0.00 3.01
2880 3699 9.765795 GGCTAGTATTTATATGTTGTCAGAACT 57.234 33.333 0.00 0.00 0.00 3.01
2887 3706 8.492673 TTTATATGTTGTCAGAACTCCATGAC 57.507 34.615 0.00 0.00 44.88 3.06
2891 3710 1.731720 GTCAGAACTCCATGACAGCC 58.268 55.000 0.00 0.00 44.21 4.85
2892 3711 0.247460 TCAGAACTCCATGACAGCCG 59.753 55.000 0.00 0.00 0.00 5.52
2893 3712 0.247460 CAGAACTCCATGACAGCCGA 59.753 55.000 0.00 0.00 0.00 5.54
2894 3713 0.534412 AGAACTCCATGACAGCCGAG 59.466 55.000 0.00 0.00 0.00 4.63
2895 3714 0.532573 GAACTCCATGACAGCCGAGA 59.467 55.000 0.00 0.00 0.00 4.04
2896 3715 1.137872 GAACTCCATGACAGCCGAGAT 59.862 52.381 0.00 0.00 0.00 2.75
2897 3716 1.198713 ACTCCATGACAGCCGAGATT 58.801 50.000 0.00 0.00 0.00 2.40
2898 3717 1.134580 ACTCCATGACAGCCGAGATTG 60.135 52.381 0.00 0.00 0.00 2.67
2899 3718 0.904649 TCCATGACAGCCGAGATTGT 59.095 50.000 0.00 0.00 0.00 2.71
2900 3719 1.134699 TCCATGACAGCCGAGATTGTC 60.135 52.381 0.00 0.00 43.07 3.18
2901 3720 1.134580 CCATGACAGCCGAGATTGTCT 60.135 52.381 0.00 0.00 43.15 3.41
2902 3721 2.200067 CATGACAGCCGAGATTGTCTC 58.800 52.381 6.24 0.00 43.15 3.36
2914 3733 5.487153 GAGATTGTCTCGTAGTTAGAGCA 57.513 43.478 0.00 0.00 33.35 4.26
2915 3734 6.067263 GAGATTGTCTCGTAGTTAGAGCAT 57.933 41.667 0.00 0.00 33.35 3.79
2916 3735 6.067263 AGATTGTCTCGTAGTTAGAGCATC 57.933 41.667 0.00 0.00 35.79 3.91
2917 3736 6.017440 GAGATTGTCTCGTAGTTAGAGCATCT 60.017 42.308 0.00 0.00 40.78 2.90
2918 3737 7.171848 GAGATTGTCTCGTAGTTAGAGCATCTA 59.828 40.741 0.00 0.00 39.22 1.98
2927 3746 4.462394 GAGCATCTATGGCCGCAA 57.538 55.556 0.00 0.00 0.00 4.85
2928 3747 2.706636 GAGCATCTATGGCCGCAAA 58.293 52.632 0.00 0.00 0.00 3.68
2929 3748 0.308993 GAGCATCTATGGCCGCAAAC 59.691 55.000 0.00 0.00 0.00 2.93
2930 3749 0.394216 AGCATCTATGGCCGCAAACA 60.394 50.000 0.00 0.00 0.00 2.83
2931 3750 0.455410 GCATCTATGGCCGCAAACAA 59.545 50.000 0.00 0.00 0.00 2.83
2932 3751 1.798813 GCATCTATGGCCGCAAACAAC 60.799 52.381 0.00 0.00 0.00 3.32
2933 3752 1.472082 CATCTATGGCCGCAAACAACA 59.528 47.619 0.00 0.00 0.00 3.33
2934 3753 1.164411 TCTATGGCCGCAAACAACAG 58.836 50.000 0.00 0.00 0.00 3.16
2935 3754 1.164411 CTATGGCCGCAAACAACAGA 58.836 50.000 0.00 0.00 0.00 3.41
2936 3755 1.745087 CTATGGCCGCAAACAACAGAT 59.255 47.619 0.00 0.00 0.00 2.90
2937 3756 0.244450 ATGGCCGCAAACAACAGATG 59.756 50.000 0.00 0.00 0.00 2.90
2938 3757 1.734117 GGCCGCAAACAACAGATGC 60.734 57.895 0.00 0.00 36.74 3.91
2941 3760 4.557942 GCAAACAACAGATGCGGG 57.442 55.556 0.00 0.00 0.00 6.13
2942 3761 1.734117 GCAAACAACAGATGCGGGC 60.734 57.895 0.00 0.00 0.00 6.13
2943 3762 1.080569 CAAACAACAGATGCGGGCC 60.081 57.895 0.00 0.00 0.00 5.80
2944 3763 2.275380 AAACAACAGATGCGGGCCC 61.275 57.895 13.57 13.57 0.00 5.80
2945 3764 2.713531 AAACAACAGATGCGGGCCCT 62.714 55.000 22.43 0.00 0.00 5.19
2946 3765 2.825836 CAACAGATGCGGGCCCTC 60.826 66.667 22.43 13.90 0.00 4.30
2947 3766 3.329889 AACAGATGCGGGCCCTCA 61.330 61.111 18.77 18.77 0.00 3.86
2948 3767 2.905996 AACAGATGCGGGCCCTCAA 61.906 57.895 20.54 4.17 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.350365 GTGCTCTCATGAACGTAAACCATTA 59.650 40.000 0.00 0.00 0.00 1.90
107 108 7.068702 TGATACATCCATTGGCTTTTATCCTT 58.931 34.615 0.00 0.00 0.00 3.36
108 109 6.613699 TGATACATCCATTGGCTTTTATCCT 58.386 36.000 0.00 0.00 0.00 3.24
120 121 2.808202 GCTGCGGACTGATACATCCATT 60.808 50.000 0.00 0.00 34.35 3.16
122 123 0.104855 GCTGCGGACTGATACATCCA 59.895 55.000 0.00 0.00 34.35 3.41
141 142 2.735772 ATGCTGTGCCTACTCCCGG 61.736 63.158 0.00 0.00 0.00 5.73
171 172 2.182842 GCCACGTCCTCCATCATGC 61.183 63.158 0.00 0.00 0.00 4.06
198 199 5.123027 CCTCACAATTTTGCTCTTCTCCTAC 59.877 44.000 0.00 0.00 0.00 3.18
199 200 5.013079 TCCTCACAATTTTGCTCTTCTCCTA 59.987 40.000 0.00 0.00 0.00 2.94
203 204 7.613022 TCATATTCCTCACAATTTTGCTCTTCT 59.387 33.333 0.00 0.00 0.00 2.85
268 269 3.201290 GTGACATCTTGGTCTGCCTATG 58.799 50.000 0.00 0.00 38.61 2.23
273 274 3.254166 ACAAATGTGACATCTTGGTCTGC 59.746 43.478 17.98 0.00 38.61 4.26
280 281 7.042335 GCTAGTACCTACAAATGTGACATCTT 58.958 38.462 0.00 0.00 0.00 2.40
384 430 7.724305 ACTGCTAAAATGACGAACTTCTAAA 57.276 32.000 0.00 0.00 0.00 1.85
387 433 6.619801 AAACTGCTAAAATGACGAACTTCT 57.380 33.333 0.00 0.00 0.00 2.85
389 435 8.665685 CCTATAAACTGCTAAAATGACGAACTT 58.334 33.333 0.00 0.00 0.00 2.66
390 436 7.201617 GCCTATAAACTGCTAAAATGACGAACT 60.202 37.037 0.00 0.00 0.00 3.01
531 956 2.477189 CGTTTATGTGTGCCGGATTTCC 60.477 50.000 5.05 0.00 0.00 3.13
538 963 0.727793 GCCAACGTTTATGTGTGCCG 60.728 55.000 0.00 0.00 0.00 5.69
553 978 3.555324 TCCCGAGCTGTGTGCCAA 61.555 61.111 0.00 0.00 44.23 4.52
554 979 4.314440 GTCCCGAGCTGTGTGCCA 62.314 66.667 0.00 0.00 44.23 4.92
624 1086 3.206211 TTTCCTTTGGCTTGCGCGG 62.206 57.895 8.83 0.00 36.88 6.46
630 1092 1.472552 GCCGTTTGTTTCCTTTGGCTT 60.473 47.619 0.00 0.00 38.00 4.35
631 1093 0.104120 GCCGTTTGTTTCCTTTGGCT 59.896 50.000 0.00 0.00 38.00 4.75
632 1094 1.212455 CGCCGTTTGTTTCCTTTGGC 61.212 55.000 0.00 0.00 37.66 4.52
633 1095 0.596341 CCGCCGTTTGTTTCCTTTGG 60.596 55.000 0.00 0.00 0.00 3.28
634 1096 0.382515 TCCGCCGTTTGTTTCCTTTG 59.617 50.000 0.00 0.00 0.00 2.77
635 1097 0.666374 CTCCGCCGTTTGTTTCCTTT 59.334 50.000 0.00 0.00 0.00 3.11
636 1098 0.464916 ACTCCGCCGTTTGTTTCCTT 60.465 50.000 0.00 0.00 0.00 3.36
637 1099 0.883370 GACTCCGCCGTTTGTTTCCT 60.883 55.000 0.00 0.00 0.00 3.36
638 1100 1.161563 TGACTCCGCCGTTTGTTTCC 61.162 55.000 0.00 0.00 0.00 3.13
651 1113 0.804989 CGGCTGATTGGTTTGACTCC 59.195 55.000 0.00 0.00 0.00 3.85
683 1149 3.647771 GTGGGTGGGTGGGAGGTC 61.648 72.222 0.00 0.00 0.00 3.85
686 1152 3.572715 TAGGGTGGGTGGGTGGGAG 62.573 68.421 0.00 0.00 0.00 4.30
687 1153 3.543626 TAGGGTGGGTGGGTGGGA 61.544 66.667 0.00 0.00 0.00 4.37
688 1154 3.335729 GTAGGGTGGGTGGGTGGG 61.336 72.222 0.00 0.00 0.00 4.61
689 1155 3.335729 GGTAGGGTGGGTGGGTGG 61.336 72.222 0.00 0.00 0.00 4.61
690 1156 3.335729 GGGTAGGGTGGGTGGGTG 61.336 72.222 0.00 0.00 0.00 4.61
691 1157 4.688302 GGGGTAGGGTGGGTGGGT 62.688 72.222 0.00 0.00 0.00 4.51
739 1209 2.922503 GGCCTTTGTGGGGTTGGG 60.923 66.667 0.00 0.00 36.00 4.12
740 1210 2.123077 TGGCCTTTGTGGGGTTGG 60.123 61.111 3.32 0.00 36.00 3.77
741 1211 2.871253 GCTGGCCTTTGTGGGGTTG 61.871 63.158 3.32 0.00 36.00 3.77
742 1212 2.524148 GCTGGCCTTTGTGGGGTT 60.524 61.111 3.32 0.00 36.00 4.11
743 1213 3.086764 AAGCTGGCCTTTGTGGGGT 62.087 57.895 3.32 0.00 36.00 4.95
744 1214 2.203684 AAGCTGGCCTTTGTGGGG 60.204 61.111 3.32 0.00 36.00 4.96
746 1216 0.600057 GAAGAAGCTGGCCTTTGTGG 59.400 55.000 3.32 0.00 32.78 4.17
748 1218 0.540597 GGGAAGAAGCTGGCCTTTGT 60.541 55.000 3.32 0.00 32.78 2.83
749 1219 1.253593 GGGGAAGAAGCTGGCCTTTG 61.254 60.000 3.32 0.00 32.78 2.77
750 1220 1.077445 GGGGAAGAAGCTGGCCTTT 59.923 57.895 3.32 0.00 32.78 3.11
751 1221 2.766660 GGGGAAGAAGCTGGCCTT 59.233 61.111 3.32 0.00 36.19 4.35
752 1222 3.721706 CGGGGAAGAAGCTGGCCT 61.722 66.667 3.32 0.00 0.00 5.19
817 1304 0.882484 TCGCGGTGATTTGTGCAAGA 60.882 50.000 6.13 0.00 0.00 3.02
839 1326 1.477553 TTGGCTGGATTTGAGATGGC 58.522 50.000 0.00 0.00 0.00 4.40
840 1327 3.512724 AGTTTTGGCTGGATTTGAGATGG 59.487 43.478 0.00 0.00 0.00 3.51
845 1332 3.295093 TGTGAGTTTTGGCTGGATTTGA 58.705 40.909 0.00 0.00 0.00 2.69
853 1340 3.297134 TCTTCCTTGTGAGTTTTGGCT 57.703 42.857 0.00 0.00 0.00 4.75
854 1341 4.385358 TTTCTTCCTTGTGAGTTTTGGC 57.615 40.909 0.00 0.00 0.00 4.52
874 1361 1.067635 GGCTTGATTGTGCGTGGATTT 60.068 47.619 0.00 0.00 0.00 2.17
884 1371 1.000506 CTTGCTGCTTGGCTTGATTGT 59.999 47.619 0.00 0.00 0.00 2.71
891 1378 2.035312 CTCCCTTGCTGCTTGGCT 59.965 61.111 0.00 0.00 0.00 4.75
893 1380 0.676151 GACTCTCCCTTGCTGCTTGG 60.676 60.000 0.00 2.80 0.00 3.61
900 1387 2.507324 GCGACGACTCTCCCTTGC 60.507 66.667 0.00 0.00 0.00 4.01
905 1392 3.519930 GGGAGGCGACGACTCTCC 61.520 72.222 28.82 23.21 44.64 3.71
906 1393 3.519930 GGGGAGGCGACGACTCTC 61.520 72.222 28.82 26.11 37.47 3.20
909 1396 3.148279 GATGGGGAGGCGACGACT 61.148 66.667 0.71 0.71 0.00 4.18
910 1397 4.222847 GGATGGGGAGGCGACGAC 62.223 72.222 0.00 0.00 0.00 4.34
911 1398 4.770362 TGGATGGGGAGGCGACGA 62.770 66.667 0.00 0.00 0.00 4.20
912 1399 4.530857 GTGGATGGGGAGGCGACG 62.531 72.222 0.00 0.00 0.00 5.12
913 1400 4.530857 CGTGGATGGGGAGGCGAC 62.531 72.222 0.00 0.00 0.00 5.19
919 1406 4.776322 CAAGCGCGTGGATGGGGA 62.776 66.667 16.02 0.00 0.00 4.81
924 1413 2.106683 GGTAAGCAAGCGCGTGGAT 61.107 57.895 24.46 2.97 45.49 3.41
972 1461 5.878484 ATAAGTAGGGGATTAATTGGGGG 57.122 43.478 0.00 0.00 0.00 5.40
973 1462 7.367459 GGGATATAAGTAGGGGATTAATTGGGG 60.367 44.444 0.00 0.00 0.00 4.96
977 1466 7.185856 GGGTGGGATATAAGTAGGGGATTAATT 59.814 40.741 0.00 0.00 0.00 1.40
978 1467 6.681541 GGGTGGGATATAAGTAGGGGATTAAT 59.318 42.308 0.00 0.00 0.00 1.40
979 1468 6.034003 GGGTGGGATATAAGTAGGGGATTAA 58.966 44.000 0.00 0.00 0.00 1.40
980 1469 5.606761 GGGTGGGATATAAGTAGGGGATTA 58.393 45.833 0.00 0.00 0.00 1.75
981 1470 4.445564 GGGTGGGATATAAGTAGGGGATT 58.554 47.826 0.00 0.00 0.00 3.01
1005 1496 3.508840 GATTTGTGGCGAGGCGGG 61.509 66.667 0.00 0.00 0.00 6.13
1010 1501 0.958091 TTTGGGTGATTTGTGGCGAG 59.042 50.000 0.00 0.00 0.00 5.03
1011 1502 1.543802 GATTTGGGTGATTTGTGGCGA 59.456 47.619 0.00 0.00 0.00 5.54
1012 1503 1.404047 GGATTTGGGTGATTTGTGGCG 60.404 52.381 0.00 0.00 0.00 5.69
1013 1504 1.622811 TGGATTTGGGTGATTTGTGGC 59.377 47.619 0.00 0.00 0.00 5.01
1015 1506 4.020396 TGGATTGGATTTGGGTGATTTGTG 60.020 41.667 0.00 0.00 0.00 3.33
1016 1507 4.020307 GTGGATTGGATTTGGGTGATTTGT 60.020 41.667 0.00 0.00 0.00 2.83
1017 1508 4.506758 GTGGATTGGATTTGGGTGATTTG 58.493 43.478 0.00 0.00 0.00 2.32
1018 1509 3.519107 GGTGGATTGGATTTGGGTGATTT 59.481 43.478 0.00 0.00 0.00 2.17
1019 1510 3.106827 GGTGGATTGGATTTGGGTGATT 58.893 45.455 0.00 0.00 0.00 2.57
1020 1511 2.044215 TGGTGGATTGGATTTGGGTGAT 59.956 45.455 0.00 0.00 0.00 3.06
1034 1525 0.324645 GAATTGGTGGCCTGGTGGAT 60.325 55.000 3.32 0.00 34.57 3.41
1035 1526 1.076549 GAATTGGTGGCCTGGTGGA 59.923 57.895 3.32 0.00 34.57 4.02
1041 1532 2.155197 GAGTGGGGAATTGGTGGCCT 62.155 60.000 3.32 0.00 0.00 5.19
1042 1533 1.682344 GAGTGGGGAATTGGTGGCC 60.682 63.158 0.00 0.00 0.00 5.36
1043 1534 0.681243 GAGAGTGGGGAATTGGTGGC 60.681 60.000 0.00 0.00 0.00 5.01
1044 1535 0.392998 CGAGAGTGGGGAATTGGTGG 60.393 60.000 0.00 0.00 0.00 4.61
1045 1536 1.026718 GCGAGAGTGGGGAATTGGTG 61.027 60.000 0.00 0.00 0.00 4.17
1046 1537 1.299976 GCGAGAGTGGGGAATTGGT 59.700 57.895 0.00 0.00 0.00 3.67
1048 1539 1.815421 CGGCGAGAGTGGGGAATTG 60.815 63.158 0.00 0.00 0.00 2.32
1049 1540 2.240162 GACGGCGAGAGTGGGGAATT 62.240 60.000 16.62 0.00 0.00 2.17
1050 1541 2.683933 ACGGCGAGAGTGGGGAAT 60.684 61.111 16.62 0.00 0.00 3.01
1051 1542 3.379445 GACGGCGAGAGTGGGGAA 61.379 66.667 16.62 0.00 0.00 3.97
1054 1545 1.079127 ATTTGACGGCGAGAGTGGG 60.079 57.895 16.62 0.00 0.00 4.61
1057 1548 0.173708 GGAGATTTGACGGCGAGAGT 59.826 55.000 16.62 0.00 0.00 3.24
1059 1550 0.970937 AGGGAGATTTGACGGCGAGA 60.971 55.000 16.62 0.00 0.00 4.04
1060 1551 0.528684 GAGGGAGATTTGACGGCGAG 60.529 60.000 16.62 0.00 0.00 5.03
1061 1552 1.254975 TGAGGGAGATTTGACGGCGA 61.255 55.000 16.62 0.00 0.00 5.54
1065 1779 1.472376 GGAGCTGAGGGAGATTTGACG 60.472 57.143 0.00 0.00 0.00 4.35
1067 1781 2.114616 GAGGAGCTGAGGGAGATTTGA 58.885 52.381 0.00 0.00 0.00 2.69
1069 1783 1.009429 AGGAGGAGCTGAGGGAGATTT 59.991 52.381 0.00 0.00 0.00 2.17
1074 1789 2.277072 CGAGGAGGAGCTGAGGGA 59.723 66.667 0.00 0.00 0.00 4.20
1336 2063 0.976641 TGAGGTTGTACTGGAGCAGG 59.023 55.000 0.00 0.00 35.51 4.85
1552 2279 1.591703 CAGCTGCGTCCTGAGGTTA 59.408 57.895 0.00 0.00 32.03 2.85
1757 2492 3.065371 GCACCAAGGAATCGAATCGAATT 59.935 43.478 10.12 4.76 39.99 2.17
1823 2566 1.036707 ACCAACCAACCAACCAATCG 58.963 50.000 0.00 0.00 0.00 3.34
1825 2568 1.134250 GCAACCAACCAACCAACCAAT 60.134 47.619 0.00 0.00 0.00 3.16
1892 2670 6.212235 TGCGAAAATCTCTAGCAAGATCTAG 58.788 40.000 0.00 0.00 34.90 2.43
1927 2711 4.738252 TCGATAGTATGTGCAAAGCTAACG 59.262 41.667 11.92 11.92 37.40 3.18
1981 2768 2.308690 GGTGGGTACTACTCCTGCTAG 58.691 57.143 0.00 0.00 40.67 3.42
1993 2780 5.701290 ACTAGTAATCGTATACGGTGGGTAC 59.299 44.000 24.18 16.25 40.29 3.34
1996 2783 5.009010 ACAACTAGTAATCGTATACGGTGGG 59.991 44.000 24.18 10.85 40.29 4.61
2045 2835 6.097696 TCAACAATGGTCGAATAGTAGGATGA 59.902 38.462 0.00 0.00 0.00 2.92
2075 2865 9.642327 AATGAAAGAGATCTGAATATCGATGAG 57.358 33.333 8.54 0.00 0.00 2.90
2092 2885 4.567971 ACAGCAGAGTCTGAATGAAAGAG 58.432 43.478 24.55 4.37 37.51 2.85
2123 2916 7.413475 AACGAGCATGAATATATCAACAGAC 57.587 36.000 0.00 0.00 42.54 3.51
2148 2945 2.009774 AGGAAGAAATTGCGATGGACG 58.990 47.619 0.00 0.00 45.66 4.79
2151 2948 3.428045 GGTTCAGGAAGAAATTGCGATGG 60.428 47.826 0.00 0.00 38.13 3.51
2168 2965 3.066064 CACGAAAAGTTGGTCATGGTTCA 59.934 43.478 0.00 0.00 0.00 3.18
2179 2976 3.168193 GGTCAACACACACGAAAAGTTG 58.832 45.455 0.00 0.00 40.53 3.16
2193 2990 0.950836 CCGTGCTGATTTGGTCAACA 59.049 50.000 0.00 0.00 36.14 3.33
2194 2991 0.387239 GCCGTGCTGATTTGGTCAAC 60.387 55.000 0.00 0.00 36.14 3.18
2195 2992 0.821301 TGCCGTGCTGATTTGGTCAA 60.821 50.000 0.00 0.00 36.14 3.18
2206 3003 4.427661 GCTCTCGACTGCCGTGCT 62.428 66.667 0.00 0.00 39.75 4.40
2207 3004 4.724602 TGCTCTCGACTGCCGTGC 62.725 66.667 2.92 0.00 39.75 5.34
2221 3018 3.435327 TCGTGCGAAATTATCAAACTGCT 59.565 39.130 0.00 0.00 0.00 4.24
2222 3019 3.742786 TCGTGCGAAATTATCAAACTGC 58.257 40.909 0.00 0.00 0.00 4.40
2223 3020 6.665055 GCTTTTCGTGCGAAATTATCAAACTG 60.665 38.462 18.46 3.55 42.71 3.16
2226 3023 4.619336 GGCTTTTCGTGCGAAATTATCAAA 59.381 37.500 18.46 3.51 42.71 2.69
2227 3024 4.083003 AGGCTTTTCGTGCGAAATTATCAA 60.083 37.500 18.46 4.14 42.71 2.57
2228 3025 3.438781 AGGCTTTTCGTGCGAAATTATCA 59.561 39.130 18.46 4.77 42.71 2.15
2232 3031 2.607038 GGAAGGCTTTTCGTGCGAAATT 60.607 45.455 18.46 10.92 42.71 1.82
2296 3098 1.153369 CAATCGCCATCACCGTCCT 60.153 57.895 0.00 0.00 0.00 3.85
2325 3127 0.392336 GAAAACACATGGGCTGGCAA 59.608 50.000 2.88 0.00 0.00 4.52
2333 3135 3.315191 ACTGAAGAACGGAAAACACATGG 59.685 43.478 0.00 0.00 0.00 3.66
2334 3136 4.552166 ACTGAAGAACGGAAAACACATG 57.448 40.909 0.00 0.00 0.00 3.21
2349 3151 1.195448 GACACCGATGCACAACTGAAG 59.805 52.381 0.00 0.00 0.00 3.02
2366 3168 3.635331 GTGTTTGCTACTGTAGTCGACA 58.365 45.455 19.50 13.61 36.35 4.35
2370 3172 1.725164 GGCGTGTTTGCTACTGTAGTC 59.275 52.381 15.71 9.00 34.52 2.59
2375 3177 0.666274 TCTCGGCGTGTTTGCTACTG 60.666 55.000 6.85 0.00 34.52 2.74
2380 3182 1.082756 CTTGTCTCGGCGTGTTTGC 60.083 57.895 6.85 0.00 0.00 3.68
2381 3183 0.508641 CTCTTGTCTCGGCGTGTTTG 59.491 55.000 6.85 0.00 0.00 2.93
2395 3204 0.795085 CTGCTCGAAACCTGCTCTTG 59.205 55.000 0.00 0.00 0.00 3.02
2419 3228 1.301401 TTCCACTTGGACGCTTCCG 60.301 57.895 4.57 0.00 46.37 4.30
2432 3241 1.374758 CTCGCTGACCTGGTTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
2434 3243 1.079750 GACTCGCTGACCTGGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
2444 3253 1.982612 TTCAGATTCACGACTCGCTG 58.017 50.000 0.00 0.00 0.00 5.18
2451 3260 2.262211 CACGAGCATTCAGATTCACGA 58.738 47.619 0.00 0.00 0.00 4.35
2459 3268 4.193021 CTAATGAAGCACGAGCATTCAG 57.807 45.455 18.44 7.56 45.49 3.02
2486 3295 0.731417 AACAGCATCATTCAGAGCGC 59.269 50.000 0.00 0.00 0.00 5.92
2487 3296 1.063616 CCAACAGCATCATTCAGAGCG 59.936 52.381 0.00 0.00 0.00 5.03
2488 3297 1.202268 GCCAACAGCATCATTCAGAGC 60.202 52.381 0.00 0.00 42.97 4.09
2489 3298 1.404391 GGCCAACAGCATCATTCAGAG 59.596 52.381 0.00 0.00 46.50 3.35
2493 3302 1.466856 TCAGGCCAACAGCATCATTC 58.533 50.000 5.01 0.00 46.50 2.67
2499 3308 0.106769 TCAGTTTCAGGCCAACAGCA 60.107 50.000 5.01 0.00 46.50 4.41
2513 3322 2.629617 CCAGCCAAATTGGTTCTCAGTT 59.370 45.455 14.17 0.00 40.46 3.16
2518 3327 0.971386 CTGCCAGCCAAATTGGTTCT 59.029 50.000 14.17 0.00 40.46 3.01
2519 3328 0.968405 TCTGCCAGCCAAATTGGTTC 59.032 50.000 14.17 0.00 40.46 3.62
2531 3340 1.739562 GTTCGTCTGCCTCTGCCAG 60.740 63.158 0.00 0.00 36.33 4.85
2542 3351 2.492484 AGCCACTTAATCTCGTTCGTCT 59.508 45.455 0.00 0.00 0.00 4.18
2591 3400 3.444742 TCAATTTGTCTGCATCCATCCAC 59.555 43.478 0.00 0.00 0.00 4.02
2603 3412 4.768448 TGTGCATGATCCTTCAATTTGTCT 59.232 37.500 0.00 0.00 34.96 3.41
2604 3413 5.063180 TGTGCATGATCCTTCAATTTGTC 57.937 39.130 0.00 0.00 34.96 3.18
2605 3414 4.525487 ACTGTGCATGATCCTTCAATTTGT 59.475 37.500 0.00 0.00 34.96 2.83
2608 3417 4.525487 ACAACTGTGCATGATCCTTCAATT 59.475 37.500 0.00 0.00 34.96 2.32
2609 3418 4.084287 ACAACTGTGCATGATCCTTCAAT 58.916 39.130 0.00 0.00 34.96 2.57
2610 3419 3.489355 ACAACTGTGCATGATCCTTCAA 58.511 40.909 0.00 0.00 34.96 2.69
2611 3420 3.144657 ACAACTGTGCATGATCCTTCA 57.855 42.857 0.00 0.00 36.00 3.02
2612 3421 5.049818 GCTATACAACTGTGCATGATCCTTC 60.050 44.000 0.00 0.00 0.00 3.46
2613 3422 4.818546 GCTATACAACTGTGCATGATCCTT 59.181 41.667 0.00 0.00 0.00 3.36
2614 3423 4.141642 TGCTATACAACTGTGCATGATCCT 60.142 41.667 0.00 0.00 0.00 3.24
2615 3424 4.129380 TGCTATACAACTGTGCATGATCC 58.871 43.478 0.00 0.00 0.00 3.36
2616 3425 4.319333 GCTGCTATACAACTGTGCATGATC 60.319 45.833 0.00 0.00 33.02 2.92
2617 3426 3.562973 GCTGCTATACAACTGTGCATGAT 59.437 43.478 0.00 0.00 33.02 2.45
2618 3427 2.938451 GCTGCTATACAACTGTGCATGA 59.062 45.455 0.00 0.00 33.02 3.07
2619 3428 2.032550 GGCTGCTATACAACTGTGCATG 59.967 50.000 0.00 0.00 33.02 4.06
2620 3429 2.292267 GGCTGCTATACAACTGTGCAT 58.708 47.619 0.00 0.00 33.02 3.96
2621 3430 1.003003 TGGCTGCTATACAACTGTGCA 59.997 47.619 0.00 0.00 0.00 4.57
2622 3431 1.667724 CTGGCTGCTATACAACTGTGC 59.332 52.381 0.00 0.00 0.00 4.57
2623 3432 1.667724 GCTGGCTGCTATACAACTGTG 59.332 52.381 9.31 0.00 38.95 3.66
2624 3433 1.407437 GGCTGGCTGCTATACAACTGT 60.407 52.381 16.14 0.00 42.39 3.55
2625 3434 1.303309 GGCTGGCTGCTATACAACTG 58.697 55.000 16.14 0.00 42.39 3.16
2626 3435 0.911769 TGGCTGGCTGCTATACAACT 59.088 50.000 16.14 0.00 42.39 3.16
2627 3436 1.303309 CTGGCTGGCTGCTATACAAC 58.697 55.000 16.14 0.00 42.39 3.32
2628 3437 0.464373 GCTGGCTGGCTGCTATACAA 60.464 55.000 22.63 0.00 42.39 2.41
2629 3438 1.146930 GCTGGCTGGCTGCTATACA 59.853 57.895 22.63 4.75 42.39 2.29
2630 3439 0.883814 CTGCTGGCTGGCTGCTATAC 60.884 60.000 27.89 6.18 42.39 1.47
2631 3440 1.448924 CTGCTGGCTGGCTGCTATA 59.551 57.895 27.89 11.80 42.39 1.31
2632 3441 2.192443 CTGCTGGCTGGCTGCTAT 59.808 61.111 27.89 0.00 42.39 2.97
2633 3442 4.105553 CCTGCTGGCTGGCTGCTA 62.106 66.667 27.89 16.24 42.39 3.49
2651 3460 1.202110 CGAAACATGCAAGCTAGCCAG 60.202 52.381 12.13 5.27 0.00 4.85
2652 3461 0.804364 CGAAACATGCAAGCTAGCCA 59.196 50.000 12.13 2.38 0.00 4.75
2653 3462 0.804989 ACGAAACATGCAAGCTAGCC 59.195 50.000 12.13 0.00 0.00 3.93
2654 3463 2.095768 TCAACGAAACATGCAAGCTAGC 60.096 45.455 6.62 6.62 0.00 3.42
2655 3464 3.187227 ACTCAACGAAACATGCAAGCTAG 59.813 43.478 0.00 0.00 0.00 3.42
2656 3465 3.138304 ACTCAACGAAACATGCAAGCTA 58.862 40.909 0.00 0.00 0.00 3.32
2657 3466 1.949525 ACTCAACGAAACATGCAAGCT 59.050 42.857 0.00 0.00 0.00 3.74
2658 3467 2.405892 ACTCAACGAAACATGCAAGC 57.594 45.000 0.00 0.00 0.00 4.01
2659 3468 3.951306 TCAACTCAACGAAACATGCAAG 58.049 40.909 0.00 0.00 0.00 4.01
2660 3469 3.243035 CCTCAACTCAACGAAACATGCAA 60.243 43.478 0.00 0.00 0.00 4.08
2661 3470 2.290367 CCTCAACTCAACGAAACATGCA 59.710 45.455 0.00 0.00 0.00 3.96
2662 3471 2.290641 ACCTCAACTCAACGAAACATGC 59.709 45.455 0.00 0.00 0.00 4.06
2663 3472 4.376008 CGTACCTCAACTCAACGAAACATG 60.376 45.833 0.00 0.00 35.66 3.21
2722 3541 2.015587 GACGTATTCCTCCTCTGTCGT 58.984 52.381 0.00 0.00 0.00 4.34
2732 3551 6.212888 AGTAATTTACACGGACGTATTCCT 57.787 37.500 9.15 0.00 43.25 3.36
2734 3553 9.716507 TTAGTAGTAATTTACACGGACGTATTC 57.283 33.333 9.15 0.00 0.00 1.75
2796 3615 5.448438 CCGAAATCTGAATCGACACAAAAA 58.552 37.500 15.14 0.00 41.43 1.94
2797 3616 4.612712 GCCGAAATCTGAATCGACACAAAA 60.613 41.667 15.14 0.00 41.43 2.44
2798 3617 3.120338 GCCGAAATCTGAATCGACACAAA 60.120 43.478 15.14 0.00 41.43 2.83
2799 3618 2.415168 GCCGAAATCTGAATCGACACAA 59.585 45.455 15.14 0.00 41.43 3.33
2800 3619 1.999735 GCCGAAATCTGAATCGACACA 59.000 47.619 15.14 0.00 41.43 3.72
2801 3620 1.999735 TGCCGAAATCTGAATCGACAC 59.000 47.619 15.14 7.12 41.43 3.67
2802 3621 1.999735 GTGCCGAAATCTGAATCGACA 59.000 47.619 15.14 8.86 41.43 4.35
2803 3622 1.327764 GGTGCCGAAATCTGAATCGAC 59.672 52.381 15.14 6.67 41.43 4.20
2804 3623 1.651987 GGTGCCGAAATCTGAATCGA 58.348 50.000 15.14 0.00 41.43 3.59
2805 3624 0.301687 CGGTGCCGAAATCTGAATCG 59.698 55.000 4.35 8.67 42.83 3.34
2806 3625 1.369625 ACGGTGCCGAAATCTGAATC 58.630 50.000 18.16 0.00 42.83 2.52
2807 3626 1.821216 AACGGTGCCGAAATCTGAAT 58.179 45.000 18.16 0.00 42.83 2.57
2808 3627 2.070783 GTAACGGTGCCGAAATCTGAA 58.929 47.619 18.16 0.00 42.83 3.02
2809 3628 1.673626 GGTAACGGTGCCGAAATCTGA 60.674 52.381 18.16 0.00 42.83 3.27
2810 3629 0.725117 GGTAACGGTGCCGAAATCTG 59.275 55.000 18.16 0.00 42.83 2.90
2811 3630 3.148340 GGTAACGGTGCCGAAATCT 57.852 52.632 18.16 0.00 42.83 2.40
2824 3643 1.508632 AGCACACATGTCACGGTAAC 58.491 50.000 0.00 0.00 0.00 2.50
2825 3644 3.388345 TTAGCACACATGTCACGGTAA 57.612 42.857 0.00 0.80 0.00 2.85
2826 3645 3.388345 TTTAGCACACATGTCACGGTA 57.612 42.857 0.00 0.00 0.00 4.02
2827 3646 2.248280 TTTAGCACACATGTCACGGT 57.752 45.000 0.00 0.00 0.00 4.83
2828 3647 3.829886 ATTTTAGCACACATGTCACGG 57.170 42.857 0.00 0.00 0.00 4.94
2829 3648 6.623353 CGTATTATTTTAGCACACATGTCACG 59.377 38.462 0.00 0.00 0.00 4.35
2830 3649 6.905076 CCGTATTATTTTAGCACACATGTCAC 59.095 38.462 0.00 0.00 0.00 3.67
2831 3650 6.457663 GCCGTATTATTTTAGCACACATGTCA 60.458 38.462 0.00 0.00 0.00 3.58
2832 3651 5.907391 GCCGTATTATTTTAGCACACATGTC 59.093 40.000 0.00 0.00 0.00 3.06
2833 3652 5.588648 AGCCGTATTATTTTAGCACACATGT 59.411 36.000 0.00 0.00 0.00 3.21
2834 3653 6.060028 AGCCGTATTATTTTAGCACACATG 57.940 37.500 0.00 0.00 0.00 3.21
2835 3654 6.990349 ACTAGCCGTATTATTTTAGCACACAT 59.010 34.615 0.00 0.00 0.00 3.21
2836 3655 6.342906 ACTAGCCGTATTATTTTAGCACACA 58.657 36.000 0.00 0.00 0.00 3.72
2837 3656 6.839820 ACTAGCCGTATTATTTTAGCACAC 57.160 37.500 0.00 0.00 0.00 3.82
2838 3657 9.550406 AAATACTAGCCGTATTATTTTAGCACA 57.450 29.630 8.82 0.00 45.65 4.57
2850 3669 9.856488 CTGACAACATATAAATACTAGCCGTAT 57.144 33.333 0.00 0.00 40.51 3.06
2851 3670 9.070179 TCTGACAACATATAAATACTAGCCGTA 57.930 33.333 0.00 0.00 0.00 4.02
2852 3671 7.948357 TCTGACAACATATAAATACTAGCCGT 58.052 34.615 0.00 0.00 0.00 5.68
2853 3672 8.700644 GTTCTGACAACATATAAATACTAGCCG 58.299 37.037 0.00 0.00 0.00 5.52
2854 3673 9.765795 AGTTCTGACAACATATAAATACTAGCC 57.234 33.333 0.00 0.00 0.00 3.93
2861 3680 9.113838 GTCATGGAGTTCTGACAACATATAAAT 57.886 33.333 0.00 0.00 41.13 1.40
2862 3681 8.100164 TGTCATGGAGTTCTGACAACATATAAA 58.900 33.333 3.07 0.00 46.41 1.40
2863 3682 7.619965 TGTCATGGAGTTCTGACAACATATAA 58.380 34.615 3.07 0.00 46.41 0.98
2864 3683 7.181569 TGTCATGGAGTTCTGACAACATATA 57.818 36.000 3.07 0.00 46.41 0.86
2865 3684 6.053632 TGTCATGGAGTTCTGACAACATAT 57.946 37.500 3.07 0.00 46.41 1.78
2866 3685 5.482163 TGTCATGGAGTTCTGACAACATA 57.518 39.130 3.07 0.00 46.41 2.29
2867 3686 4.356405 TGTCATGGAGTTCTGACAACAT 57.644 40.909 3.07 0.00 46.41 2.71
2868 3687 3.836365 TGTCATGGAGTTCTGACAACA 57.164 42.857 3.07 0.00 46.41 3.33
2872 3691 1.731720 GGCTGTCATGGAGTTCTGAC 58.268 55.000 0.00 0.00 41.69 3.51
2873 3692 0.247460 CGGCTGTCATGGAGTTCTGA 59.753 55.000 0.00 0.00 0.00 3.27
2874 3693 0.247460 TCGGCTGTCATGGAGTTCTG 59.753 55.000 0.00 0.00 0.00 3.02
2875 3694 0.534412 CTCGGCTGTCATGGAGTTCT 59.466 55.000 0.00 0.00 0.00 3.01
2876 3695 0.532573 TCTCGGCTGTCATGGAGTTC 59.467 55.000 0.00 0.00 0.00 3.01
2877 3696 1.198713 ATCTCGGCTGTCATGGAGTT 58.801 50.000 0.00 0.00 0.00 3.01
2878 3697 1.134580 CAATCTCGGCTGTCATGGAGT 60.135 52.381 0.00 0.00 0.00 3.85
2879 3698 1.134580 ACAATCTCGGCTGTCATGGAG 60.135 52.381 0.00 0.00 0.00 3.86
2880 3699 0.904649 ACAATCTCGGCTGTCATGGA 59.095 50.000 0.00 0.00 0.00 3.41
2881 3700 1.134580 AGACAATCTCGGCTGTCATGG 60.135 52.381 6.60 0.00 43.64 3.66
2882 3701 2.200067 GAGACAATCTCGGCTGTCATG 58.800 52.381 6.60 0.00 43.64 3.07
2883 3702 2.593346 GAGACAATCTCGGCTGTCAT 57.407 50.000 6.60 0.00 43.64 3.06
2892 3711 5.487153 TGCTCTAACTACGAGACAATCTC 57.513 43.478 0.00 0.00 40.06 2.75
2893 3712 5.825679 AGATGCTCTAACTACGAGACAATCT 59.174 40.000 0.00 0.00 0.00 2.40
2894 3713 6.067263 AGATGCTCTAACTACGAGACAATC 57.933 41.667 0.00 0.00 0.00 2.67
2895 3714 7.308891 CCATAGATGCTCTAACTACGAGACAAT 60.309 40.741 0.00 0.00 31.96 2.71
2896 3715 6.017026 CCATAGATGCTCTAACTACGAGACAA 60.017 42.308 0.00 0.00 31.96 3.18
2897 3716 5.470437 CCATAGATGCTCTAACTACGAGACA 59.530 44.000 0.00 0.00 31.96 3.41
2898 3717 5.618195 GCCATAGATGCTCTAACTACGAGAC 60.618 48.000 0.00 0.00 31.96 3.36
2899 3718 4.456222 GCCATAGATGCTCTAACTACGAGA 59.544 45.833 0.00 0.00 31.96 4.04
2900 3719 4.380023 GGCCATAGATGCTCTAACTACGAG 60.380 50.000 0.00 0.00 31.96 4.18
2901 3720 3.506455 GGCCATAGATGCTCTAACTACGA 59.494 47.826 0.00 0.00 31.96 3.43
2902 3721 3.670895 CGGCCATAGATGCTCTAACTACG 60.671 52.174 2.24 0.00 31.96 3.51
2903 3722 3.839293 CGGCCATAGATGCTCTAACTAC 58.161 50.000 2.24 0.00 31.96 2.73
2904 3723 2.231478 GCGGCCATAGATGCTCTAACTA 59.769 50.000 2.24 0.00 31.96 2.24
2905 3724 1.001406 GCGGCCATAGATGCTCTAACT 59.999 52.381 2.24 0.00 31.96 2.24
2906 3725 1.270305 TGCGGCCATAGATGCTCTAAC 60.270 52.381 2.24 0.00 31.96 2.34
2907 3726 1.047801 TGCGGCCATAGATGCTCTAA 58.952 50.000 2.24 0.00 31.96 2.10
2908 3727 1.047801 TTGCGGCCATAGATGCTCTA 58.952 50.000 2.24 0.00 32.87 2.43
2909 3728 0.181114 TTTGCGGCCATAGATGCTCT 59.819 50.000 2.24 0.00 0.00 4.09
2910 3729 0.308993 GTTTGCGGCCATAGATGCTC 59.691 55.000 2.24 0.00 0.00 4.26
2911 3730 0.394216 TGTTTGCGGCCATAGATGCT 60.394 50.000 2.24 0.00 0.00 3.79
2912 3731 0.455410 TTGTTTGCGGCCATAGATGC 59.545 50.000 2.24 0.00 0.00 3.91
2913 3732 1.472082 TGTTGTTTGCGGCCATAGATG 59.528 47.619 2.24 0.00 0.00 2.90
2914 3733 1.745087 CTGTTGTTTGCGGCCATAGAT 59.255 47.619 2.24 0.00 0.00 1.98
2915 3734 1.164411 CTGTTGTTTGCGGCCATAGA 58.836 50.000 2.24 0.00 0.00 1.98
2916 3735 1.164411 TCTGTTGTTTGCGGCCATAG 58.836 50.000 2.24 0.00 0.00 2.23
2917 3736 1.472082 CATCTGTTGTTTGCGGCCATA 59.528 47.619 2.24 0.00 0.00 2.74
2918 3737 0.244450 CATCTGTTGTTTGCGGCCAT 59.756 50.000 2.24 0.00 0.00 4.40
2919 3738 1.659233 CATCTGTTGTTTGCGGCCA 59.341 52.632 2.24 0.00 0.00 5.36
2920 3739 1.734117 GCATCTGTTGTTTGCGGCC 60.734 57.895 0.00 0.00 0.00 6.13
2921 3740 3.846754 GCATCTGTTGTTTGCGGC 58.153 55.556 0.00 0.00 0.00 6.53
2924 3743 1.734117 GCCCGCATCTGTTGTTTGC 60.734 57.895 0.00 0.00 0.00 3.68
2925 3744 1.080569 GGCCCGCATCTGTTGTTTG 60.081 57.895 0.00 0.00 0.00 2.93
2926 3745 2.275380 GGGCCCGCATCTGTTGTTT 61.275 57.895 5.69 0.00 0.00 2.83
2927 3746 2.676471 GGGCCCGCATCTGTTGTT 60.676 61.111 5.69 0.00 0.00 2.83
2928 3747 3.628646 GAGGGCCCGCATCTGTTGT 62.629 63.158 22.24 0.00 0.00 3.32
2929 3748 2.825836 GAGGGCCCGCATCTGTTG 60.826 66.667 22.24 0.00 0.00 3.33
2930 3749 2.905996 TTGAGGGCCCGCATCTGTT 61.906 57.895 30.16 1.23 0.00 3.16
2931 3750 3.329889 TTGAGGGCCCGCATCTGT 61.330 61.111 30.16 2.19 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.