Multiple sequence alignment - TraesCS2D01G594900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G594900 chr2D 100.000 3363 0 0 1 3363 648359948 648356586 0.000000e+00 6211.0
1 TraesCS2D01G594900 chr2D 82.004 489 69 13 803 1286 648702618 648703092 6.760000e-107 398.0
2 TraesCS2D01G594900 chr2D 76.800 375 70 13 834 1200 648511837 648512202 9.520000e-46 195.0
3 TraesCS2D01G594900 chr2D 82.143 84 12 1 1868 1948 533972482 533972565 6.020000e-08 69.4
4 TraesCS2D01G594900 chrUn 93.502 1862 64 24 639 2471 31029932 31031765 0.000000e+00 2715.0
5 TraesCS2D01G594900 chrUn 95.385 780 22 5 2584 3363 31086521 31087286 0.000000e+00 1229.0
6 TraesCS2D01G594900 chrUn 92.233 206 8 2 388 591 31029728 31029927 5.490000e-73 285.0
7 TraesCS2D01G594900 chrUn 87.209 86 8 3 2882 2966 68242694 68242777 9.930000e-16 95.3
8 TraesCS2D01G594900 chr2B 93.017 1604 75 14 644 2211 784279565 784277963 0.000000e+00 2307.0
9 TraesCS2D01G594900 chr2B 81.431 517 80 11 803 1314 784725851 784726356 3.120000e-110 409.0
10 TraesCS2D01G594900 chr2B 91.964 224 11 4 412 630 784279769 784279548 1.170000e-79 307.0
11 TraesCS2D01G594900 chr2B 90.678 118 3 1 319 428 784283966 784283849 2.090000e-32 150.0
12 TraesCS2D01G594900 chr2B 77.061 279 20 23 2211 2488 784277937 784277702 1.640000e-23 121.0
13 TraesCS2D01G594900 chr2B 82.759 87 12 1 1867 1950 634176900 634176986 1.290000e-09 75.0
14 TraesCS2D01G594900 chr2B 89.831 59 4 2 254 311 784285079 784285022 1.290000e-09 75.0
15 TraesCS2D01G594900 chr5D 98.333 240 3 1 1 240 547752599 547752361 1.440000e-113 420.0
16 TraesCS2D01G594900 chr5D 91.489 47 4 0 2883 2929 285843692 285843738 7.790000e-07 65.8
17 TraesCS2D01G594900 chr2A 90.947 243 18 4 2 240 601721342 601721100 1.160000e-84 324.0
18 TraesCS2D01G594900 chr6A 91.739 230 13 3 14 237 93234525 93234754 7.000000e-82 315.0
19 TraesCS2D01G594900 chr1B 90.496 242 16 5 2 240 619260474 619260711 2.520000e-81 313.0
20 TraesCS2D01G594900 chr7A 90.948 232 14 5 13 238 689441425 689441195 4.220000e-79 305.0
21 TraesCS2D01G594900 chr7A 89.655 232 17 5 13 238 689415844 689415614 4.250000e-74 289.0
22 TraesCS2D01G594900 chr7A 88.321 137 10 5 107 240 144647430 144647563 3.470000e-35 159.0
23 TraesCS2D01G594900 chr4A 80.695 259 24 12 2 240 169460385 169460133 9.590000e-41 178.0
24 TraesCS2D01G594900 chr3A 92.241 116 5 3 126 241 700933304 700933193 9.660000e-36 161.0
25 TraesCS2D01G594900 chr6D 86.517 89 11 1 2879 2966 35626734 35626822 2.760000e-16 97.1
26 TraesCS2D01G594900 chr6D 83.951 81 9 3 2483 2562 437926437 437926514 1.290000e-09 75.0
27 TraesCS2D01G594900 chr6B 91.071 56 4 1 2896 2950 146165010 146164955 1.290000e-09 75.0
28 TraesCS2D01G594900 chr4D 97.436 39 1 0 2487 2525 341411645 341411607 2.170000e-07 67.6
29 TraesCS2D01G594900 chr4D 94.444 36 1 1 2476 2510 295854604 295854639 2.000000e-03 54.7
30 TraesCS2D01G594900 chr1D 85.938 64 7 2 2892 2954 467017824 467017762 2.170000e-07 67.6
31 TraesCS2D01G594900 chr5A 91.304 46 2 2 2480 2524 569791416 569791460 1.010000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G594900 chr2D 648356586 648359948 3362 True 6211.000000 6211 100.000000 1 3363 1 chr2D.!!$R1 3362
1 TraesCS2D01G594900 chrUn 31029728 31031765 2037 False 1500.000000 2715 92.867500 388 2471 2 chrUn.!!$F3 2083
2 TraesCS2D01G594900 chrUn 31086521 31087286 765 False 1229.000000 1229 95.385000 2584 3363 1 chrUn.!!$F1 779
3 TraesCS2D01G594900 chr2B 784277702 784279769 2067 True 911.666667 2307 87.347333 412 2488 3 chr2B.!!$R1 2076
4 TraesCS2D01G594900 chr2B 784725851 784726356 505 False 409.000000 409 81.431000 803 1314 1 chr2B.!!$F2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.035317 ATGTGCAAGAACAGAGCCGA 59.965 50.0 0.00 0.00 32.52 5.54 F
301 302 0.035317 AAGAACAGAGCCGATGTGCA 59.965 50.0 0.00 0.00 0.00 4.57 F
304 305 0.036105 AACAGAGCCGATGTGCATCA 60.036 50.0 12.03 0.00 37.69 3.07 F
343 344 0.101399 CCGCACTGGTAGCAGTCTAG 59.899 60.0 24.25 16.92 32.26 2.43 F
378 379 0.175989 TTTTGGCGGAAAACCCACAC 59.824 50.0 0.00 0.00 34.14 3.82 F
678 688 0.325203 TAGGGAAAATTGCTGGCCCC 60.325 55.0 0.00 0.00 39.68 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1262 1.673665 CACAGCCAGGTGGAGCTTC 60.674 63.158 0.0 0.0 37.18 3.86 R
1878 1913 2.125912 CCCAGGTTCGTCAGCTCG 60.126 66.667 0.0 0.0 0.00 5.03 R
2302 2379 2.942376 CGATATGCTGCCACTAAAACCA 59.058 45.455 0.0 0.0 0.00 3.67 R
2310 2387 1.737236 TCAACAACGATATGCTGCCAC 59.263 47.619 0.0 0.0 0.00 5.01 R
2311 2388 2.106477 TCAACAACGATATGCTGCCA 57.894 45.000 0.0 0.0 0.00 4.92 R
2434 2512 2.073056 TGAATTTCACCATCACGTCCG 58.927 47.619 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.468769 TACGGGTGCGGGGGAGAT 62.469 66.667 0.00 0.00 0.00 2.75
20 21 3.988050 TACGGGTGCGGGGGAGATT 62.988 63.158 0.00 0.00 0.00 2.40
21 22 4.856801 CGGGTGCGGGGGAGATTG 62.857 72.222 0.00 0.00 0.00 2.67
22 23 4.506255 GGGTGCGGGGGAGATTGG 62.506 72.222 0.00 0.00 0.00 3.16
23 24 4.506255 GGTGCGGGGGAGATTGGG 62.506 72.222 0.00 0.00 0.00 4.12
24 25 3.728373 GTGCGGGGGAGATTGGGT 61.728 66.667 0.00 0.00 0.00 4.51
25 26 3.727258 TGCGGGGGAGATTGGGTG 61.727 66.667 0.00 0.00 0.00 4.61
26 27 3.728373 GCGGGGGAGATTGGGTGT 61.728 66.667 0.00 0.00 0.00 4.16
27 28 2.272146 CGGGGGAGATTGGGTGTG 59.728 66.667 0.00 0.00 0.00 3.82
28 29 2.043953 GGGGGAGATTGGGTGTGC 60.044 66.667 0.00 0.00 0.00 4.57
29 30 2.438434 GGGGAGATTGGGTGTGCG 60.438 66.667 0.00 0.00 0.00 5.34
30 31 2.351276 GGGAGATTGGGTGTGCGT 59.649 61.111 0.00 0.00 0.00 5.24
31 32 2.040544 GGGAGATTGGGTGTGCGTG 61.041 63.158 0.00 0.00 0.00 5.34
32 33 1.003839 GGAGATTGGGTGTGCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
33 34 1.021390 GGAGATTGGGTGTGCGTGAG 61.021 60.000 0.00 0.00 0.00 3.51
34 35 0.320771 GAGATTGGGTGTGCGTGAGT 60.321 55.000 0.00 0.00 0.00 3.41
35 36 0.108585 AGATTGGGTGTGCGTGAGTT 59.891 50.000 0.00 0.00 0.00 3.01
36 37 0.238289 GATTGGGTGTGCGTGAGTTG 59.762 55.000 0.00 0.00 0.00 3.16
37 38 1.172180 ATTGGGTGTGCGTGAGTTGG 61.172 55.000 0.00 0.00 0.00 3.77
38 39 3.660111 GGGTGTGCGTGAGTTGGC 61.660 66.667 0.00 0.00 0.00 4.52
39 40 2.591715 GGTGTGCGTGAGTTGGCT 60.592 61.111 0.00 0.00 0.00 4.75
40 41 2.186826 GGTGTGCGTGAGTTGGCTT 61.187 57.895 0.00 0.00 0.00 4.35
41 42 1.279840 GTGTGCGTGAGTTGGCTTC 59.720 57.895 0.00 0.00 0.00 3.86
42 43 1.146041 TGTGCGTGAGTTGGCTTCT 59.854 52.632 0.00 0.00 0.00 2.85
43 44 1.159713 TGTGCGTGAGTTGGCTTCTG 61.160 55.000 0.00 0.00 0.00 3.02
44 45 0.880278 GTGCGTGAGTTGGCTTCTGA 60.880 55.000 0.00 0.00 0.00 3.27
45 46 0.880278 TGCGTGAGTTGGCTTCTGAC 60.880 55.000 0.00 0.00 0.00 3.51
46 47 1.891060 GCGTGAGTTGGCTTCTGACG 61.891 60.000 14.03 14.03 43.14 4.35
47 48 0.318699 CGTGAGTTGGCTTCTGACGA 60.319 55.000 13.40 0.00 42.98 4.20
48 49 1.670087 CGTGAGTTGGCTTCTGACGAT 60.670 52.381 13.40 0.00 42.98 3.73
49 50 2.417719 GTGAGTTGGCTTCTGACGATT 58.582 47.619 0.00 0.00 0.00 3.34
50 51 2.808543 GTGAGTTGGCTTCTGACGATTT 59.191 45.455 0.00 0.00 0.00 2.17
51 52 2.807967 TGAGTTGGCTTCTGACGATTTG 59.192 45.455 0.00 0.00 0.00 2.32
52 53 3.067106 GAGTTGGCTTCTGACGATTTGA 58.933 45.455 0.00 0.00 0.00 2.69
53 54 3.679389 AGTTGGCTTCTGACGATTTGAT 58.321 40.909 0.00 0.00 0.00 2.57
54 55 3.686726 AGTTGGCTTCTGACGATTTGATC 59.313 43.478 0.00 0.00 0.00 2.92
67 68 3.498082 GATTTGATCGTGGGGAAAAACG 58.502 45.455 0.00 0.00 41.11 3.60
68 69 1.970092 TTGATCGTGGGGAAAAACGT 58.030 45.000 0.00 0.00 40.61 3.99
69 70 1.231221 TGATCGTGGGGAAAAACGTG 58.769 50.000 0.00 0.00 40.61 4.49
70 71 0.519961 GATCGTGGGGAAAAACGTGG 59.480 55.000 0.00 0.00 40.61 4.94
71 72 0.891904 ATCGTGGGGAAAAACGTGGG 60.892 55.000 0.00 0.00 40.61 4.61
72 73 1.526455 CGTGGGGAAAAACGTGGGA 60.526 57.895 0.00 0.00 35.13 4.37
73 74 1.788067 CGTGGGGAAAAACGTGGGAC 61.788 60.000 0.00 0.00 35.13 4.46
83 84 4.748679 CGTGGGACGTCGACGGAC 62.749 72.222 37.89 29.46 42.58 4.79
84 85 3.663176 GTGGGACGTCGACGGACA 61.663 66.667 37.89 29.11 43.61 4.02
85 86 3.359523 TGGGACGTCGACGGACAG 61.360 66.667 37.89 14.06 43.61 3.51
86 87 4.112341 GGGACGTCGACGGACAGG 62.112 72.222 37.89 13.31 43.61 4.00
87 88 4.773117 GGACGTCGACGGACAGGC 62.773 72.222 37.89 20.15 43.61 4.85
88 89 4.773117 GACGTCGACGGACAGGCC 62.773 72.222 37.89 15.82 43.61 5.19
97 98 2.357517 GGACAGGCCGTGTGACTG 60.358 66.667 11.89 0.00 40.56 3.51
98 99 2.357517 GACAGGCCGTGTGACTGG 60.358 66.667 11.89 0.00 40.56 4.00
99 100 3.883744 GACAGGCCGTGTGACTGGG 62.884 68.421 11.89 0.00 40.56 4.45
100 101 3.941188 CAGGCCGTGTGACTGGGT 61.941 66.667 0.00 0.00 0.00 4.51
101 102 3.168528 AGGCCGTGTGACTGGGTT 61.169 61.111 0.00 0.00 0.00 4.11
102 103 2.978010 GGCCGTGTGACTGGGTTG 60.978 66.667 0.00 0.00 0.00 3.77
103 104 3.660111 GCCGTGTGACTGGGTTGC 61.660 66.667 0.00 0.00 0.00 4.17
104 105 2.978010 CCGTGTGACTGGGTTGCC 60.978 66.667 0.00 0.00 0.00 4.52
105 106 2.111043 CGTGTGACTGGGTTGCCT 59.889 61.111 0.00 0.00 0.00 4.75
106 107 1.525995 CGTGTGACTGGGTTGCCTT 60.526 57.895 0.00 0.00 0.00 4.35
107 108 1.785041 CGTGTGACTGGGTTGCCTTG 61.785 60.000 0.00 0.00 0.00 3.61
108 109 1.152777 TGTGACTGGGTTGCCTTGG 60.153 57.895 0.00 0.00 0.00 3.61
109 110 1.903404 GTGACTGGGTTGCCTTGGG 60.903 63.158 0.00 0.00 0.00 4.12
110 111 2.081787 TGACTGGGTTGCCTTGGGA 61.082 57.895 0.00 0.00 0.00 4.37
111 112 1.384191 GACTGGGTTGCCTTGGGAT 59.616 57.895 0.00 0.00 0.00 3.85
112 113 0.967380 GACTGGGTTGCCTTGGGATG 60.967 60.000 0.00 0.00 0.00 3.51
113 114 1.683365 CTGGGTTGCCTTGGGATGG 60.683 63.158 0.00 0.00 0.00 3.51
114 115 2.445155 GGGTTGCCTTGGGATGGT 59.555 61.111 0.00 0.00 0.00 3.55
115 116 1.984026 GGGTTGCCTTGGGATGGTG 60.984 63.158 0.00 0.00 0.00 4.17
116 117 1.984026 GGTTGCCTTGGGATGGTGG 60.984 63.158 0.00 0.00 0.00 4.61
117 118 1.984026 GTTGCCTTGGGATGGTGGG 60.984 63.158 0.00 0.00 0.00 4.61
118 119 3.903281 TTGCCTTGGGATGGTGGGC 62.903 63.158 0.00 0.00 42.73 5.36
119 120 4.066139 GCCTTGGGATGGTGGGCT 62.066 66.667 0.00 0.00 39.68 5.19
120 121 2.772924 CCTTGGGATGGTGGGCTT 59.227 61.111 0.00 0.00 0.00 4.35
121 122 1.380380 CCTTGGGATGGTGGGCTTC 60.380 63.158 0.00 0.00 0.00 3.86
122 123 1.383799 CTTGGGATGGTGGGCTTCA 59.616 57.895 0.00 0.00 0.00 3.02
123 124 0.251742 CTTGGGATGGTGGGCTTCAA 60.252 55.000 0.00 0.00 0.00 2.69
124 125 0.413037 TTGGGATGGTGGGCTTCAAT 59.587 50.000 0.00 0.00 0.00 2.57
125 126 0.413037 TGGGATGGTGGGCTTCAATT 59.587 50.000 0.00 0.00 0.00 2.32
126 127 1.203288 TGGGATGGTGGGCTTCAATTT 60.203 47.619 0.00 0.00 0.00 1.82
127 128 1.908619 GGGATGGTGGGCTTCAATTTT 59.091 47.619 0.00 0.00 0.00 1.82
128 129 2.305635 GGGATGGTGGGCTTCAATTTTT 59.694 45.455 0.00 0.00 0.00 1.94
129 130 3.337358 GGATGGTGGGCTTCAATTTTTG 58.663 45.455 0.00 0.00 0.00 2.44
130 131 2.926778 TGGTGGGCTTCAATTTTTGG 57.073 45.000 0.00 0.00 0.00 3.28
131 132 1.419387 TGGTGGGCTTCAATTTTTGGG 59.581 47.619 0.00 0.00 0.00 4.12
132 133 1.696884 GGTGGGCTTCAATTTTTGGGA 59.303 47.619 0.00 0.00 0.00 4.37
133 134 2.305635 GGTGGGCTTCAATTTTTGGGAT 59.694 45.455 0.00 0.00 0.00 3.85
134 135 3.337358 GTGGGCTTCAATTTTTGGGATG 58.663 45.455 0.00 0.00 0.00 3.51
135 136 3.007831 GTGGGCTTCAATTTTTGGGATGA 59.992 43.478 0.00 0.00 0.00 2.92
136 137 3.845398 TGGGCTTCAATTTTTGGGATGAT 59.155 39.130 0.00 0.00 0.00 2.45
137 138 4.193865 GGGCTTCAATTTTTGGGATGATG 58.806 43.478 0.00 0.00 0.00 3.07
138 139 3.624410 GGCTTCAATTTTTGGGATGATGC 59.376 43.478 0.00 0.00 40.33 3.91
139 140 4.255301 GCTTCAATTTTTGGGATGATGCA 58.745 39.130 0.00 0.00 40.59 3.96
140 141 4.331717 GCTTCAATTTTTGGGATGATGCAG 59.668 41.667 0.00 0.00 40.59 4.41
141 142 4.475051 TCAATTTTTGGGATGATGCAGG 57.525 40.909 0.00 0.00 0.00 4.85
142 143 2.940410 CAATTTTTGGGATGATGCAGGC 59.060 45.455 0.00 0.00 0.00 4.85
143 144 0.531657 TTTTTGGGATGATGCAGGCG 59.468 50.000 0.00 0.00 0.00 5.52
144 145 0.611618 TTTTGGGATGATGCAGGCGT 60.612 50.000 0.00 0.00 0.00 5.68
145 146 1.314534 TTTGGGATGATGCAGGCGTG 61.315 55.000 1.01 1.01 0.00 5.34
146 147 2.903855 GGGATGATGCAGGCGTGG 60.904 66.667 8.72 0.00 0.00 4.94
147 148 3.589881 GGATGATGCAGGCGTGGC 61.590 66.667 8.72 1.33 0.00 5.01
162 163 4.557605 GGCCCATTGCGCGTGATG 62.558 66.667 8.43 12.21 42.61 3.07
163 164 4.557605 GCCCATTGCGCGTGATGG 62.558 66.667 26.13 26.13 41.99 3.51
164 165 3.133464 CCCATTGCGCGTGATGGT 61.133 61.111 28.65 3.21 40.98 3.55
165 166 2.699768 CCCATTGCGCGTGATGGTT 61.700 57.895 28.65 1.24 40.98 3.67
166 167 1.514657 CCATTGCGCGTGATGGTTG 60.515 57.895 25.29 8.78 38.38 3.77
167 168 1.209898 CATTGCGCGTGATGGTTGT 59.790 52.632 8.43 0.00 0.00 3.32
168 169 0.794229 CATTGCGCGTGATGGTTGTC 60.794 55.000 8.43 0.00 0.00 3.18
169 170 2.239341 ATTGCGCGTGATGGTTGTCG 62.239 55.000 8.43 0.00 0.00 4.35
170 171 3.411351 GCGCGTGATGGTTGTCGT 61.411 61.111 8.43 0.00 0.00 4.34
171 172 2.089936 GCGCGTGATGGTTGTCGTA 61.090 57.895 8.43 0.00 0.00 3.43
172 173 1.418342 GCGCGTGATGGTTGTCGTAT 61.418 55.000 8.43 0.00 0.00 3.06
173 174 0.297525 CGCGTGATGGTTGTCGTATG 59.702 55.000 0.00 0.00 0.00 2.39
174 175 1.635844 GCGTGATGGTTGTCGTATGA 58.364 50.000 0.00 0.00 0.00 2.15
175 176 1.996898 GCGTGATGGTTGTCGTATGAA 59.003 47.619 0.00 0.00 0.00 2.57
176 177 2.029244 GCGTGATGGTTGTCGTATGAAG 59.971 50.000 0.00 0.00 0.00 3.02
177 178 2.603110 CGTGATGGTTGTCGTATGAAGG 59.397 50.000 0.00 0.00 0.00 3.46
178 179 2.936498 GTGATGGTTGTCGTATGAAGGG 59.064 50.000 0.00 0.00 0.00 3.95
179 180 2.835156 TGATGGTTGTCGTATGAAGGGA 59.165 45.455 0.00 0.00 0.00 4.20
180 181 3.118775 TGATGGTTGTCGTATGAAGGGAG 60.119 47.826 0.00 0.00 0.00 4.30
181 182 1.553248 TGGTTGTCGTATGAAGGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
182 183 1.553704 GGTTGTCGTATGAAGGGAGGT 59.446 52.381 0.00 0.00 0.00 3.85
183 184 2.618053 GTTGTCGTATGAAGGGAGGTG 58.382 52.381 0.00 0.00 0.00 4.00
184 185 1.191535 TGTCGTATGAAGGGAGGTGG 58.808 55.000 0.00 0.00 0.00 4.61
185 186 0.464452 GTCGTATGAAGGGAGGTGGG 59.536 60.000 0.00 0.00 0.00 4.61
186 187 0.689745 TCGTATGAAGGGAGGTGGGG 60.690 60.000 0.00 0.00 0.00 4.96
187 188 0.689745 CGTATGAAGGGAGGTGGGGA 60.690 60.000 0.00 0.00 0.00 4.81
188 189 1.821088 GTATGAAGGGAGGTGGGGAT 58.179 55.000 0.00 0.00 0.00 3.85
189 190 1.700186 GTATGAAGGGAGGTGGGGATC 59.300 57.143 0.00 0.00 0.00 3.36
190 191 1.056700 ATGAAGGGAGGTGGGGATCG 61.057 60.000 0.00 0.00 0.00 3.69
191 192 1.382695 GAAGGGAGGTGGGGATCGA 60.383 63.158 0.00 0.00 0.00 3.59
192 193 0.981277 GAAGGGAGGTGGGGATCGAA 60.981 60.000 0.00 0.00 0.00 3.71
193 194 1.272554 AAGGGAGGTGGGGATCGAAC 61.273 60.000 0.00 0.00 0.00 3.95
194 195 2.499685 GGAGGTGGGGATCGAACG 59.500 66.667 0.00 0.00 0.00 3.95
195 196 2.056223 GGAGGTGGGGATCGAACGA 61.056 63.158 0.00 0.00 0.00 3.85
196 197 1.437986 GAGGTGGGGATCGAACGAG 59.562 63.158 2.94 0.00 0.00 4.18
197 198 2.017559 GAGGTGGGGATCGAACGAGG 62.018 65.000 2.94 0.00 0.00 4.63
198 199 2.356780 GGTGGGGATCGAACGAGGT 61.357 63.158 2.94 0.00 0.00 3.85
199 200 1.141234 GTGGGGATCGAACGAGGTC 59.859 63.158 2.94 0.00 0.00 3.85
200 201 2.412112 GGGGATCGAACGAGGTCG 59.588 66.667 3.88 3.88 46.33 4.79
205 206 3.748623 TCGAACGAGGTCGAACCA 58.251 55.556 11.07 0.00 46.52 3.67
206 207 2.260247 TCGAACGAGGTCGAACCAT 58.740 52.632 11.07 0.00 46.52 3.55
207 208 0.169672 TCGAACGAGGTCGAACCATC 59.830 55.000 11.07 0.00 46.52 3.51
208 209 0.109458 CGAACGAGGTCGAACCATCA 60.109 55.000 4.28 0.00 43.86 3.07
209 210 1.347320 GAACGAGGTCGAACCATCAC 58.653 55.000 6.35 0.00 41.95 3.06
210 211 0.388134 AACGAGGTCGAACCATCACG 60.388 55.000 6.35 0.00 41.95 4.35
211 212 1.239296 ACGAGGTCGAACCATCACGA 61.239 55.000 6.35 0.00 41.95 4.35
214 215 4.546637 GTCGAACCATCACGACGT 57.453 55.556 0.00 0.00 46.39 4.34
215 216 2.805277 GTCGAACCATCACGACGTT 58.195 52.632 0.00 0.00 46.39 3.99
216 217 0.706729 GTCGAACCATCACGACGTTC 59.293 55.000 0.00 0.00 46.39 3.95
218 219 3.096541 GAACCATCACGACGTTCGA 57.903 52.632 13.06 0.00 43.74 3.71
219 220 1.625616 GAACCATCACGACGTTCGAT 58.374 50.000 13.06 0.00 43.74 3.59
220 221 1.582502 GAACCATCACGACGTTCGATC 59.417 52.381 13.06 0.00 43.74 3.69
221 222 0.179145 ACCATCACGACGTTCGATCC 60.179 55.000 13.06 0.00 43.74 3.36
222 223 0.870307 CCATCACGACGTTCGATCCC 60.870 60.000 13.06 0.00 43.74 3.85
223 224 0.870307 CATCACGACGTTCGATCCCC 60.870 60.000 13.06 0.00 43.74 4.81
224 225 2.012902 ATCACGACGTTCGATCCCCC 62.013 60.000 13.06 0.00 43.74 5.40
225 226 2.362120 ACGACGTTCGATCCCCCT 60.362 61.111 13.06 0.00 43.74 4.79
226 227 1.980772 ACGACGTTCGATCCCCCTT 60.981 57.895 13.06 0.00 43.74 3.95
227 228 1.217244 CGACGTTCGATCCCCCTTT 59.783 57.895 0.00 0.00 43.74 3.11
228 229 0.457035 CGACGTTCGATCCCCCTTTA 59.543 55.000 0.00 0.00 43.74 1.85
229 230 1.135024 CGACGTTCGATCCCCCTTTAA 60.135 52.381 0.00 0.00 43.74 1.52
230 231 2.482490 CGACGTTCGATCCCCCTTTAAT 60.482 50.000 0.00 0.00 43.74 1.40
231 232 3.243501 CGACGTTCGATCCCCCTTTAATA 60.244 47.826 0.00 0.00 43.74 0.98
232 233 4.304939 GACGTTCGATCCCCCTTTAATAG 58.695 47.826 0.00 0.00 0.00 1.73
233 234 3.708121 ACGTTCGATCCCCCTTTAATAGT 59.292 43.478 0.00 0.00 0.00 2.12
234 235 4.895297 ACGTTCGATCCCCCTTTAATAGTA 59.105 41.667 0.00 0.00 0.00 1.82
235 236 5.010415 ACGTTCGATCCCCCTTTAATAGTAG 59.990 44.000 0.00 0.00 0.00 2.57
236 237 5.242393 CGTTCGATCCCCCTTTAATAGTAGA 59.758 44.000 0.00 0.00 0.00 2.59
237 238 6.569994 CGTTCGATCCCCCTTTAATAGTAGAG 60.570 46.154 0.00 0.00 0.00 2.43
238 239 6.210172 TCGATCCCCCTTTAATAGTAGAGA 57.790 41.667 0.00 0.00 0.00 3.10
239 240 6.801953 TCGATCCCCCTTTAATAGTAGAGAT 58.198 40.000 0.00 0.00 0.00 2.75
240 241 7.936497 TCGATCCCCCTTTAATAGTAGAGATA 58.064 38.462 0.00 0.00 0.00 1.98
241 242 8.396388 TCGATCCCCCTTTAATAGTAGAGATAA 58.604 37.037 0.00 0.00 0.00 1.75
242 243 8.468399 CGATCCCCCTTTAATAGTAGAGATAAC 58.532 40.741 0.00 0.00 0.00 1.89
243 244 9.322769 GATCCCCCTTTAATAGTAGAGATAACA 57.677 37.037 0.00 0.00 0.00 2.41
244 245 9.860393 ATCCCCCTTTAATAGTAGAGATAACAT 57.140 33.333 0.00 0.00 0.00 2.71
245 246 9.101325 TCCCCCTTTAATAGTAGAGATAACATG 57.899 37.037 0.00 0.00 0.00 3.21
246 247 9.101325 CCCCCTTTAATAGTAGAGATAACATGA 57.899 37.037 0.00 0.00 0.00 3.07
281 282 5.706833 TGATCATGTATCAACCCATATGTGC 59.293 40.000 1.24 0.00 41.75 4.57
282 283 5.046288 TCATGTATCAACCCATATGTGCA 57.954 39.130 1.24 0.00 0.00 4.57
283 284 5.444176 TCATGTATCAACCCATATGTGCAA 58.556 37.500 1.24 0.00 0.00 4.08
284 285 5.532032 TCATGTATCAACCCATATGTGCAAG 59.468 40.000 1.24 0.00 0.00 4.01
285 286 5.109500 TGTATCAACCCATATGTGCAAGA 57.891 39.130 1.24 0.00 0.00 3.02
286 287 5.504853 TGTATCAACCCATATGTGCAAGAA 58.495 37.500 1.24 0.00 0.00 2.52
287 288 4.989279 ATCAACCCATATGTGCAAGAAC 57.011 40.909 1.24 0.00 0.00 3.01
288 289 3.760738 TCAACCCATATGTGCAAGAACA 58.239 40.909 1.24 0.00 0.00 3.18
289 290 3.758023 TCAACCCATATGTGCAAGAACAG 59.242 43.478 1.24 0.00 32.52 3.16
290 291 3.719268 ACCCATATGTGCAAGAACAGA 57.281 42.857 1.24 0.00 32.52 3.41
291 292 3.614092 ACCCATATGTGCAAGAACAGAG 58.386 45.455 1.24 0.00 32.52 3.35
292 293 2.357009 CCCATATGTGCAAGAACAGAGC 59.643 50.000 1.24 0.00 32.52 4.09
293 294 2.357009 CCATATGTGCAAGAACAGAGCC 59.643 50.000 1.24 0.00 32.52 4.70
294 295 1.725641 TATGTGCAAGAACAGAGCCG 58.274 50.000 0.00 0.00 32.52 5.52
295 296 0.035317 ATGTGCAAGAACAGAGCCGA 59.965 50.000 0.00 0.00 32.52 5.54
296 297 0.035317 TGTGCAAGAACAGAGCCGAT 59.965 50.000 0.00 0.00 0.00 4.18
297 298 0.445436 GTGCAAGAACAGAGCCGATG 59.555 55.000 0.00 0.00 0.00 3.84
298 299 0.035317 TGCAAGAACAGAGCCGATGT 59.965 50.000 0.00 0.00 0.00 3.06
299 300 0.445436 GCAAGAACAGAGCCGATGTG 59.555 55.000 0.00 0.00 0.00 3.21
300 301 0.445436 CAAGAACAGAGCCGATGTGC 59.555 55.000 0.00 0.00 0.00 4.57
301 302 0.035317 AAGAACAGAGCCGATGTGCA 59.965 50.000 0.00 0.00 0.00 4.57
302 303 0.251354 AGAACAGAGCCGATGTGCAT 59.749 50.000 0.00 0.00 0.00 3.96
303 304 0.654683 GAACAGAGCCGATGTGCATC 59.345 55.000 0.00 2.26 34.56 3.91
304 305 0.036105 AACAGAGCCGATGTGCATCA 60.036 50.000 12.03 0.00 37.69 3.07
305 306 0.179702 ACAGAGCCGATGTGCATCAT 59.820 50.000 12.03 0.00 37.69 2.45
306 307 1.413812 ACAGAGCCGATGTGCATCATA 59.586 47.619 12.03 0.00 37.69 2.15
307 308 2.158914 ACAGAGCCGATGTGCATCATAA 60.159 45.455 12.03 0.00 37.69 1.90
308 309 2.479275 CAGAGCCGATGTGCATCATAAG 59.521 50.000 12.03 0.00 37.69 1.73
309 310 2.103771 AGAGCCGATGTGCATCATAAGT 59.896 45.455 12.03 0.00 37.69 2.24
310 311 2.874701 GAGCCGATGTGCATCATAAGTT 59.125 45.455 12.03 0.00 37.69 2.66
311 312 2.874701 AGCCGATGTGCATCATAAGTTC 59.125 45.455 12.03 0.00 37.69 3.01
312 313 2.613595 GCCGATGTGCATCATAAGTTCA 59.386 45.455 12.03 0.00 37.69 3.18
313 314 3.251729 GCCGATGTGCATCATAAGTTCAT 59.748 43.478 12.03 0.00 37.69 2.57
314 315 4.452114 GCCGATGTGCATCATAAGTTCATA 59.548 41.667 12.03 0.00 37.69 2.15
315 316 5.049474 GCCGATGTGCATCATAAGTTCATAA 60.049 40.000 12.03 0.00 37.69 1.90
316 317 6.365839 CCGATGTGCATCATAAGTTCATAAC 58.634 40.000 12.03 0.00 37.69 1.89
317 318 6.067039 CGATGTGCATCATAAGTTCATAACG 58.933 40.000 12.03 0.00 37.69 3.18
318 319 6.292328 CGATGTGCATCATAAGTTCATAACGT 60.292 38.462 12.03 0.00 37.69 3.99
319 320 6.735678 TGTGCATCATAAGTTCATAACGTT 57.264 33.333 5.88 5.88 36.23 3.99
320 321 7.835634 TGTGCATCATAAGTTCATAACGTTA 57.164 32.000 11.02 11.02 36.23 3.18
321 322 8.432110 TGTGCATCATAAGTTCATAACGTTAT 57.568 30.769 15.07 15.07 36.23 1.89
322 323 9.535878 TGTGCATCATAAGTTCATAACGTTATA 57.464 29.630 19.95 3.58 36.23 0.98
323 324 9.793245 GTGCATCATAAGTTCATAACGTTATAC 57.207 33.333 19.95 15.32 36.23 1.47
324 325 8.984764 TGCATCATAAGTTCATAACGTTATACC 58.015 33.333 19.95 10.83 36.23 2.73
325 326 8.440833 GCATCATAAGTTCATAACGTTATACCC 58.559 37.037 19.95 10.51 36.23 3.69
326 327 8.644619 CATCATAAGTTCATAACGTTATACCCG 58.355 37.037 19.95 8.55 36.23 5.28
327 328 6.642131 TCATAAGTTCATAACGTTATACCCGC 59.358 38.462 19.95 9.27 36.23 6.13
328 329 4.389890 AGTTCATAACGTTATACCCGCA 57.610 40.909 19.95 0.00 36.23 5.69
329 330 4.114794 AGTTCATAACGTTATACCCGCAC 58.885 43.478 19.95 8.86 36.23 5.34
330 331 4.114794 GTTCATAACGTTATACCCGCACT 58.885 43.478 19.95 0.00 0.00 4.40
331 332 3.708890 TCATAACGTTATACCCGCACTG 58.291 45.455 19.95 6.93 0.00 3.66
332 333 2.582728 TAACGTTATACCCGCACTGG 57.417 50.000 3.29 0.00 37.55 4.00
333 334 0.609662 AACGTTATACCCGCACTGGT 59.390 50.000 0.00 0.00 42.62 4.00
334 335 1.473258 ACGTTATACCCGCACTGGTA 58.527 50.000 0.00 0.00 44.69 3.25
335 336 1.406539 ACGTTATACCCGCACTGGTAG 59.593 52.381 3.52 0.00 43.86 3.18
336 337 1.861971 GTTATACCCGCACTGGTAGC 58.138 55.000 3.52 0.00 43.86 3.58
337 338 1.137479 GTTATACCCGCACTGGTAGCA 59.863 52.381 0.00 0.00 43.86 3.49
338 339 1.037493 TATACCCGCACTGGTAGCAG 58.963 55.000 20.16 20.16 43.86 4.24
339 340 0.976073 ATACCCGCACTGGTAGCAGT 60.976 55.000 21.62 21.62 43.86 4.40
340 341 1.601419 TACCCGCACTGGTAGCAGTC 61.601 60.000 24.25 16.98 39.91 3.51
341 342 2.650116 CCCGCACTGGTAGCAGTCT 61.650 63.158 24.25 1.56 35.15 3.24
342 343 1.320344 CCCGCACTGGTAGCAGTCTA 61.320 60.000 24.25 0.00 35.15 2.59
343 344 0.101399 CCGCACTGGTAGCAGTCTAG 59.899 60.000 24.25 16.92 32.26 2.43
344 345 0.526524 CGCACTGGTAGCAGTCTAGC 60.527 60.000 24.25 21.90 42.17 3.42
346 347 2.025155 GCACTGGTAGCAGTCTAGCTA 58.975 52.381 24.25 0.00 44.50 3.32
352 353 2.846039 TAGCAGTCTAGCTACGCAAC 57.154 50.000 0.00 0.00 44.50 4.17
353 354 1.178276 AGCAGTCTAGCTACGCAACT 58.822 50.000 0.00 0.00 44.50 3.16
354 355 1.546476 AGCAGTCTAGCTACGCAACTT 59.454 47.619 0.00 0.00 44.50 2.66
355 356 1.656095 GCAGTCTAGCTACGCAACTTG 59.344 52.381 0.00 0.00 0.00 3.16
356 357 2.927014 GCAGTCTAGCTACGCAACTTGT 60.927 50.000 0.00 0.00 0.00 3.16
357 358 3.318017 CAGTCTAGCTACGCAACTTGTT 58.682 45.455 0.00 0.00 0.00 2.83
358 359 3.741344 CAGTCTAGCTACGCAACTTGTTT 59.259 43.478 0.00 0.00 0.00 2.83
359 360 4.211374 CAGTCTAGCTACGCAACTTGTTTT 59.789 41.667 0.00 0.00 0.00 2.43
360 361 4.814771 AGTCTAGCTACGCAACTTGTTTTT 59.185 37.500 0.00 0.00 0.00 1.94
376 377 3.762674 TTTTTGGCGGAAAACCCAC 57.237 47.368 0.00 0.00 33.09 4.61
377 378 0.902531 TTTTTGGCGGAAAACCCACA 59.097 45.000 0.00 0.00 33.09 4.17
378 379 0.175989 TTTTGGCGGAAAACCCACAC 59.824 50.000 0.00 0.00 34.14 3.82
379 380 0.970937 TTTGGCGGAAAACCCACACA 60.971 50.000 0.00 0.00 34.14 3.72
380 381 0.970937 TTGGCGGAAAACCCACACAA 60.971 50.000 0.00 0.00 34.14 3.33
381 382 0.757188 TGGCGGAAAACCCACACAAT 60.757 50.000 0.00 0.00 34.14 2.71
382 383 1.249407 GGCGGAAAACCCACACAATA 58.751 50.000 0.00 0.00 34.14 1.90
383 384 1.822371 GGCGGAAAACCCACACAATAT 59.178 47.619 0.00 0.00 34.14 1.28
384 385 2.232696 GGCGGAAAACCCACACAATATT 59.767 45.455 0.00 0.00 34.14 1.28
385 386 3.444388 GGCGGAAAACCCACACAATATTA 59.556 43.478 0.00 0.00 34.14 0.98
386 387 4.439563 GGCGGAAAACCCACACAATATTAG 60.440 45.833 0.00 0.00 34.14 1.73
511 512 9.896263 GGAATTTATTCAATGTTTGTTGCAAAT 57.104 25.926 0.00 0.00 38.53 2.32
544 550 3.261137 AGCTAGGGAAGTCGCTAAAAAGT 59.739 43.478 6.56 0.00 40.24 2.66
617 627 7.792374 TCAAGGCTCATGCTACTTTAATAAG 57.208 36.000 0.00 0.00 39.59 1.73
678 688 0.325203 TAGGGAAAATTGCTGGCCCC 60.325 55.000 0.00 0.00 39.68 5.80
679 689 2.578664 GGAAAATTGCTGGCCCCG 59.421 61.111 0.00 0.00 0.00 5.73
680 690 1.981853 GGAAAATTGCTGGCCCCGA 60.982 57.895 0.00 0.00 0.00 5.14
681 691 1.329913 GGAAAATTGCTGGCCCCGAT 61.330 55.000 0.00 0.00 0.00 4.18
1107 1121 1.009900 GCGTCATCCTCCTCGTACG 60.010 63.158 9.53 9.53 0.00 3.67
1218 1235 1.144936 GCTCCTGCAGCCGTATTCT 59.855 57.895 8.66 0.00 43.17 2.40
1275 1292 2.740055 GCTGTGTGCCGTCCTCTG 60.740 66.667 0.00 0.00 35.15 3.35
1517 1546 2.823147 CGCCTACTCCTCGGACGT 60.823 66.667 0.00 0.00 0.00 4.34
1638 1670 3.510753 TGCACTGGTTGTTCATGCATTAT 59.489 39.130 0.00 0.00 41.18 1.28
1767 1799 1.446272 CACCGTCGAAGGAAGGCTC 60.446 63.158 24.79 0.00 44.65 4.70
1829 1861 2.229784 GGACCAAGCAAGAACAAGATGG 59.770 50.000 0.00 0.00 0.00 3.51
1878 1913 1.007387 CAACGCCTGGCAAAACTCC 60.007 57.895 20.29 0.00 0.00 3.85
2196 2247 2.503775 CTCTCCTGAGGTGAGAGCC 58.496 63.158 22.66 0.00 46.63 4.70
2279 2356 4.095334 AGTGGGTCGTTGTTTTGAAAGTAC 59.905 41.667 0.00 0.00 0.00 2.73
2302 2379 9.389570 GTACGTGTTAGTTTGCAGATTATTTTT 57.610 29.630 0.00 0.00 0.00 1.94
2304 2381 7.381139 ACGTGTTAGTTTGCAGATTATTTTTGG 59.619 33.333 0.00 0.00 0.00 3.28
2311 2388 9.830975 AGTTTGCAGATTATTTTTGGTTTTAGT 57.169 25.926 0.00 0.00 0.00 2.24
2313 2390 8.600449 TTGCAGATTATTTTTGGTTTTAGTGG 57.400 30.769 0.00 0.00 0.00 4.00
2314 2391 6.648725 TGCAGATTATTTTTGGTTTTAGTGGC 59.351 34.615 0.00 0.00 0.00 5.01
2315 2392 6.648725 GCAGATTATTTTTGGTTTTAGTGGCA 59.351 34.615 0.00 0.00 0.00 4.92
2316 2393 7.148590 GCAGATTATTTTTGGTTTTAGTGGCAG 60.149 37.037 0.00 0.00 0.00 4.85
2318 2395 3.895232 TTTTTGGTTTTAGTGGCAGCA 57.105 38.095 0.00 0.00 0.00 4.41
2319 2396 4.414337 TTTTTGGTTTTAGTGGCAGCAT 57.586 36.364 0.00 0.00 0.00 3.79
2320 2397 5.537300 TTTTTGGTTTTAGTGGCAGCATA 57.463 34.783 0.00 0.00 0.00 3.14
2322 2399 4.981806 TTGGTTTTAGTGGCAGCATATC 57.018 40.909 0.00 0.00 0.00 1.63
2323 2400 2.942376 TGGTTTTAGTGGCAGCATATCG 59.058 45.455 0.00 0.00 0.00 2.92
2324 2401 2.943033 GGTTTTAGTGGCAGCATATCGT 59.057 45.455 0.00 0.00 0.00 3.73
2325 2402 3.377172 GGTTTTAGTGGCAGCATATCGTT 59.623 43.478 0.00 0.00 0.00 3.85
2326 2403 4.342772 GTTTTAGTGGCAGCATATCGTTG 58.657 43.478 0.00 0.00 0.00 4.10
2327 2404 2.979814 TAGTGGCAGCATATCGTTGT 57.020 45.000 0.00 0.00 0.00 3.32
2328 2405 2.113860 AGTGGCAGCATATCGTTGTT 57.886 45.000 0.00 0.00 0.00 2.83
2329 2406 1.739466 AGTGGCAGCATATCGTTGTTG 59.261 47.619 0.00 0.00 0.00 3.33
2330 2407 1.737236 GTGGCAGCATATCGTTGTTGA 59.263 47.619 0.00 0.00 30.19 3.18
2331 2408 2.355756 GTGGCAGCATATCGTTGTTGAT 59.644 45.455 0.00 0.00 30.19 2.57
2332 2409 3.016031 TGGCAGCATATCGTTGTTGATT 58.984 40.909 0.00 0.00 30.19 2.57
2333 2410 3.443329 TGGCAGCATATCGTTGTTGATTT 59.557 39.130 0.00 0.00 30.19 2.17
2334 2411 4.082300 TGGCAGCATATCGTTGTTGATTTT 60.082 37.500 0.00 0.00 30.19 1.82
2335 2412 4.266029 GGCAGCATATCGTTGTTGATTTTG 59.734 41.667 0.00 0.00 30.19 2.44
2336 2413 5.094812 GCAGCATATCGTTGTTGATTTTGA 58.905 37.500 0.00 0.00 30.19 2.69
2337 2414 5.228635 GCAGCATATCGTTGTTGATTTTGAG 59.771 40.000 0.00 0.00 30.19 3.02
2338 2415 6.317088 CAGCATATCGTTGTTGATTTTGAGT 58.683 36.000 0.00 0.00 30.19 3.41
2339 2416 7.463544 CAGCATATCGTTGTTGATTTTGAGTA 58.536 34.615 0.00 0.00 30.19 2.59
2340 2417 7.962373 CAGCATATCGTTGTTGATTTTGAGTAA 59.038 33.333 0.00 0.00 30.19 2.24
2341 2418 8.677300 AGCATATCGTTGTTGATTTTGAGTAAT 58.323 29.630 0.00 0.00 0.00 1.89
2342 2419 9.289303 GCATATCGTTGTTGATTTTGAGTAATT 57.711 29.630 0.00 0.00 0.00 1.40
2346 2423 9.743057 ATCGTTGTTGATTTTGAGTAATTTTGA 57.257 25.926 0.00 0.00 0.00 2.69
2347 2424 9.574458 TCGTTGTTGATTTTGAGTAATTTTGAA 57.426 25.926 0.00 0.00 0.00 2.69
2385 2463 2.015587 TCGTTGTTGGGTTTGTGGTAC 58.984 47.619 0.00 0.00 0.00 3.34
2390 2468 4.774660 TGTTGGGTTTGTGGTACTAGAA 57.225 40.909 0.00 0.00 0.00 2.10
2395 2473 4.409574 TGGGTTTGTGGTACTAGAACAAGA 59.590 41.667 0.00 0.00 35.39 3.02
2434 2512 2.178912 TGTTGATTCCTTGGACCGTC 57.821 50.000 0.00 0.00 0.00 4.79
2459 2537 5.760253 GGACGTGATGGTGAAATTCATATCT 59.240 40.000 17.69 4.84 0.00 1.98
2483 2561 8.429641 TCTATTCTTCCGTTAGGCTCAATAAAT 58.570 33.333 0.00 0.00 37.47 1.40
2488 2566 9.485206 TCTTCCGTTAGGCTCAATAAATAATAC 57.515 33.333 0.00 0.00 37.47 1.89
2489 2567 9.490379 CTTCCGTTAGGCTCAATAAATAATACT 57.510 33.333 0.00 0.00 37.47 2.12
2490 2568 9.485206 TTCCGTTAGGCTCAATAAATAATACTC 57.515 33.333 0.00 0.00 37.47 2.59
2491 2569 8.092687 TCCGTTAGGCTCAATAAATAATACTCC 58.907 37.037 0.00 0.00 37.47 3.85
2492 2570 7.876068 CCGTTAGGCTCAATAAATAATACTCCA 59.124 37.037 0.00 0.00 0.00 3.86
2493 2571 9.436957 CGTTAGGCTCAATAAATAATACTCCAT 57.563 33.333 0.00 0.00 0.00 3.41
2495 2573 9.959721 TTAGGCTCAATAAATAATACTCCATCC 57.040 33.333 0.00 0.00 0.00 3.51
2496 2574 7.106239 AGGCTCAATAAATAATACTCCATCCG 58.894 38.462 0.00 0.00 0.00 4.18
2497 2575 6.879458 GGCTCAATAAATAATACTCCATCCGT 59.121 38.462 0.00 0.00 0.00 4.69
2498 2576 7.064728 GGCTCAATAAATAATACTCCATCCGTC 59.935 40.741 0.00 0.00 0.00 4.79
2499 2577 7.064728 GCTCAATAAATAATACTCCATCCGTCC 59.935 40.741 0.00 0.00 0.00 4.79
2500 2578 7.391620 TCAATAAATAATACTCCATCCGTCCC 58.608 38.462 0.00 0.00 0.00 4.46
2501 2579 6.945636 ATAAATAATACTCCATCCGTCCCA 57.054 37.500 0.00 0.00 0.00 4.37
2502 2580 5.843019 AAATAATACTCCATCCGTCCCAT 57.157 39.130 0.00 0.00 0.00 4.00
2503 2581 6.945636 AAATAATACTCCATCCGTCCCATA 57.054 37.500 0.00 0.00 0.00 2.74
2504 2582 6.945636 AATAATACTCCATCCGTCCCATAA 57.054 37.500 0.00 0.00 0.00 1.90
2505 2583 7.510675 AATAATACTCCATCCGTCCCATAAT 57.489 36.000 0.00 0.00 0.00 1.28
2506 2584 8.618240 AATAATACTCCATCCGTCCCATAATA 57.382 34.615 0.00 0.00 0.00 0.98
2507 2585 8.798975 ATAATACTCCATCCGTCCCATAATAT 57.201 34.615 0.00 0.00 0.00 1.28
2508 2586 9.892444 ATAATACTCCATCCGTCCCATAATATA 57.108 33.333 0.00 0.00 0.00 0.86
2509 2587 8.618240 AATACTCCATCCGTCCCATAATATAA 57.382 34.615 0.00 0.00 0.00 0.98
2510 2588 6.945636 ACTCCATCCGTCCCATAATATAAA 57.054 37.500 0.00 0.00 0.00 1.40
2511 2589 6.947464 ACTCCATCCGTCCCATAATATAAAG 58.053 40.000 0.00 0.00 0.00 1.85
2512 2590 5.741011 TCCATCCGTCCCATAATATAAAGC 58.259 41.667 0.00 0.00 0.00 3.51
2513 2591 4.570772 CCATCCGTCCCATAATATAAAGCG 59.429 45.833 0.00 0.00 0.00 4.68
2514 2592 4.877378 TCCGTCCCATAATATAAAGCGT 57.123 40.909 0.00 0.00 0.00 5.07
2515 2593 5.217978 TCCGTCCCATAATATAAAGCGTT 57.782 39.130 0.00 0.00 0.00 4.84
2516 2594 5.613329 TCCGTCCCATAATATAAAGCGTTT 58.387 37.500 0.00 0.00 0.00 3.60
2517 2595 6.056884 TCCGTCCCATAATATAAAGCGTTTT 58.943 36.000 2.00 2.00 0.00 2.43
2518 2596 6.543100 TCCGTCCCATAATATAAAGCGTTTTT 59.457 34.615 1.60 0.00 0.00 1.94
2519 2597 6.635239 CCGTCCCATAATATAAAGCGTTTTTG 59.365 38.462 1.60 0.00 0.00 2.44
2520 2598 7.411274 CGTCCCATAATATAAAGCGTTTTTGA 58.589 34.615 1.60 0.00 0.00 2.69
2521 2599 7.375017 CGTCCCATAATATAAAGCGTTTTTGAC 59.625 37.037 1.60 0.00 0.00 3.18
2522 2600 8.185505 GTCCCATAATATAAAGCGTTTTTGACA 58.814 33.333 1.60 0.00 0.00 3.58
2523 2601 8.185505 TCCCATAATATAAAGCGTTTTTGACAC 58.814 33.333 1.60 0.00 0.00 3.67
2524 2602 7.971168 CCCATAATATAAAGCGTTTTTGACACA 59.029 33.333 1.60 0.00 0.00 3.72
2525 2603 9.347934 CCATAATATAAAGCGTTTTTGACACAA 57.652 29.630 1.60 0.00 0.00 3.33
2529 2607 9.909043 AATATAAAGCGTTTTTGACACAAAAAC 57.091 25.926 27.87 27.87 43.16 2.43
2530 2608 5.659048 AAAGCGTTTTTGACACAAAAACA 57.341 30.435 32.17 12.58 45.46 2.83
2531 2609 4.639189 AGCGTTTTTGACACAAAAACAC 57.361 36.364 32.17 27.33 45.46 3.32
2532 2610 4.303282 AGCGTTTTTGACACAAAAACACT 58.697 34.783 32.17 28.44 45.46 3.55
2533 2611 4.747605 AGCGTTTTTGACACAAAAACACTT 59.252 33.333 32.17 21.86 45.46 3.16
2534 2612 5.235401 AGCGTTTTTGACACAAAAACACTTT 59.765 32.000 32.17 20.31 45.46 2.66
2535 2613 5.904630 GCGTTTTTGACACAAAAACACTTTT 59.095 32.000 32.17 0.00 45.46 2.27
2536 2614 7.042658 AGCGTTTTTGACACAAAAACACTTTTA 60.043 29.630 32.17 9.97 45.46 1.52
2537 2615 7.742525 GCGTTTTTGACACAAAAACACTTTTAT 59.257 29.630 32.17 0.00 45.46 1.40
2552 2630 8.888579 AACACTTTTATATTATCGGACAGAGG 57.111 34.615 0.00 0.00 0.00 3.69
2553 2631 7.442656 ACACTTTTATATTATCGGACAGAGGG 58.557 38.462 0.00 0.00 0.00 4.30
2554 2632 7.289317 ACACTTTTATATTATCGGACAGAGGGA 59.711 37.037 0.00 0.00 0.00 4.20
2555 2633 7.815068 CACTTTTATATTATCGGACAGAGGGAG 59.185 40.741 0.00 0.00 0.00 4.30
2556 2634 7.509659 ACTTTTATATTATCGGACAGAGGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
2557 2635 8.945195 TTTTATATTATCGGACAGAGGGAGTA 57.055 34.615 0.00 0.00 0.00 2.59
2558 2636 8.577048 TTTATATTATCGGACAGAGGGAGTAG 57.423 38.462 0.00 0.00 0.00 2.57
2559 2637 4.726035 ATTATCGGACAGAGGGAGTAGA 57.274 45.455 0.00 0.00 0.00 2.59
2560 2638 4.726035 TTATCGGACAGAGGGAGTAGAT 57.274 45.455 0.00 0.00 0.00 1.98
2561 2639 3.603965 ATCGGACAGAGGGAGTAGATT 57.396 47.619 0.00 0.00 0.00 2.40
2562 2640 3.383698 TCGGACAGAGGGAGTAGATTT 57.616 47.619 0.00 0.00 0.00 2.17
2563 2641 3.288964 TCGGACAGAGGGAGTAGATTTC 58.711 50.000 0.00 0.00 0.00 2.17
2564 2642 3.053544 TCGGACAGAGGGAGTAGATTTCT 60.054 47.826 0.00 0.00 0.00 2.52
2565 2643 3.702045 CGGACAGAGGGAGTAGATTTCTT 59.298 47.826 0.00 0.00 0.00 2.52
2566 2644 4.202070 CGGACAGAGGGAGTAGATTTCTTC 60.202 50.000 0.00 0.00 0.00 2.87
2567 2645 4.712337 GGACAGAGGGAGTAGATTTCTTCA 59.288 45.833 0.00 0.00 0.00 3.02
2568 2646 5.163457 GGACAGAGGGAGTAGATTTCTTCAG 60.163 48.000 0.00 0.00 0.00 3.02
2569 2647 5.337788 ACAGAGGGAGTAGATTTCTTCAGT 58.662 41.667 0.00 0.00 0.00 3.41
2570 2648 5.782845 ACAGAGGGAGTAGATTTCTTCAGTT 59.217 40.000 0.00 0.00 0.00 3.16
2571 2649 6.105333 CAGAGGGAGTAGATTTCTTCAGTTG 58.895 44.000 0.00 0.00 0.00 3.16
2572 2650 4.837972 AGGGAGTAGATTTCTTCAGTTGC 58.162 43.478 0.00 0.00 0.00 4.17
2573 2651 4.534103 AGGGAGTAGATTTCTTCAGTTGCT 59.466 41.667 0.00 0.00 0.00 3.91
2574 2652 4.633565 GGGAGTAGATTTCTTCAGTTGCTG 59.366 45.833 0.00 0.00 0.00 4.41
2575 2653 5.482908 GGAGTAGATTTCTTCAGTTGCTGA 58.517 41.667 0.00 0.00 38.87 4.26
2576 2654 5.350091 GGAGTAGATTTCTTCAGTTGCTGAC 59.650 44.000 0.00 0.00 40.46 3.51
2577 2655 5.858381 AGTAGATTTCTTCAGTTGCTGACA 58.142 37.500 0.00 0.00 40.46 3.58
2578 2656 6.291377 AGTAGATTTCTTCAGTTGCTGACAA 58.709 36.000 0.00 0.00 40.46 3.18
2579 2657 5.686159 AGATTTCTTCAGTTGCTGACAAG 57.314 39.130 0.00 0.00 40.46 3.16
2593 2671 5.321983 GCTGACAAGCTCGTATCTTTATG 57.678 43.478 0.00 0.00 46.60 1.90
2598 2676 9.678941 CTGACAAGCTCGTATCTTTATGTATAA 57.321 33.333 0.00 0.00 0.00 0.98
2625 2703 9.625747 TTAAGGTGATATTGCATCATTGTTAGA 57.374 29.630 0.00 0.00 0.00 2.10
2626 2704 8.523915 AAGGTGATATTGCATCATTGTTAGAA 57.476 30.769 0.00 0.00 0.00 2.10
2627 2705 7.934457 AGGTGATATTGCATCATTGTTAGAAC 58.066 34.615 0.00 0.00 0.00 3.01
2658 2736 0.392193 CACGATCTGCTTTGCCTCCT 60.392 55.000 0.00 0.00 0.00 3.69
2661 2739 2.965831 ACGATCTGCTTTGCCTCCTATA 59.034 45.455 0.00 0.00 0.00 1.31
2665 2743 4.778213 TCTGCTTTGCCTCCTATACAAT 57.222 40.909 0.00 0.00 0.00 2.71
2666 2744 5.116084 TCTGCTTTGCCTCCTATACAATT 57.884 39.130 0.00 0.00 0.00 2.32
2667 2745 5.509498 TCTGCTTTGCCTCCTATACAATTT 58.491 37.500 0.00 0.00 0.00 1.82
2706 2784 3.056821 TGAGAAACGTGGTACATCTCCTG 60.057 47.826 0.00 0.00 44.52 3.86
2865 2943 4.764823 TGAAAATTGCTCCACGTTAATCCT 59.235 37.500 0.00 0.00 0.00 3.24
2955 3033 6.711579 ACCAAACGTCATATATTTAGCAACG 58.288 36.000 0.00 0.00 35.00 4.10
2963 3041 6.929606 GTCATATATTTAGCAACGAAGGGAGT 59.070 38.462 0.00 0.00 0.00 3.85
2964 3042 8.086522 GTCATATATTTAGCAACGAAGGGAGTA 58.913 37.037 0.00 0.00 0.00 2.59
3227 3305 5.360999 GGATTAAGGAATTTACCTGCTGCTT 59.639 40.000 0.00 0.00 40.49 3.91
3228 3306 6.546034 GGATTAAGGAATTTACCTGCTGCTTA 59.454 38.462 0.00 0.00 40.49 3.09
3300 3378 3.472652 CAGTTTACACACTTGGCACCTA 58.527 45.455 0.00 0.00 0.00 3.08
3353 3431 5.742063 TCTGACGTGTAGATCTTCTCCTTA 58.258 41.667 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.988050 AATCTCCCCCGCACCCGTA 62.988 63.158 0.00 0.00 0.00 4.02
4 5 4.856801 CAATCTCCCCCGCACCCG 62.857 72.222 0.00 0.00 0.00 5.28
5 6 4.506255 CCAATCTCCCCCGCACCC 62.506 72.222 0.00 0.00 0.00 4.61
6 7 4.506255 CCCAATCTCCCCCGCACC 62.506 72.222 0.00 0.00 0.00 5.01
7 8 3.728373 ACCCAATCTCCCCCGCAC 61.728 66.667 0.00 0.00 0.00 5.34
8 9 3.727258 CACCCAATCTCCCCCGCA 61.727 66.667 0.00 0.00 0.00 5.69
9 10 3.728373 ACACCCAATCTCCCCCGC 61.728 66.667 0.00 0.00 0.00 6.13
10 11 2.272146 CACACCCAATCTCCCCCG 59.728 66.667 0.00 0.00 0.00 5.73
11 12 2.043953 GCACACCCAATCTCCCCC 60.044 66.667 0.00 0.00 0.00 5.40
12 13 2.438434 CGCACACCCAATCTCCCC 60.438 66.667 0.00 0.00 0.00 4.81
13 14 2.040544 CACGCACACCCAATCTCCC 61.041 63.158 0.00 0.00 0.00 4.30
14 15 1.003839 TCACGCACACCCAATCTCC 60.004 57.895 0.00 0.00 0.00 3.71
15 16 0.320771 ACTCACGCACACCCAATCTC 60.321 55.000 0.00 0.00 0.00 2.75
16 17 0.108585 AACTCACGCACACCCAATCT 59.891 50.000 0.00 0.00 0.00 2.40
17 18 0.238289 CAACTCACGCACACCCAATC 59.762 55.000 0.00 0.00 0.00 2.67
18 19 1.172180 CCAACTCACGCACACCCAAT 61.172 55.000 0.00 0.00 0.00 3.16
19 20 1.821759 CCAACTCACGCACACCCAA 60.822 57.895 0.00 0.00 0.00 4.12
20 21 2.203139 CCAACTCACGCACACCCA 60.203 61.111 0.00 0.00 0.00 4.51
21 22 3.660111 GCCAACTCACGCACACCC 61.660 66.667 0.00 0.00 0.00 4.61
22 23 2.117941 GAAGCCAACTCACGCACACC 62.118 60.000 0.00 0.00 0.00 4.16
23 24 1.160329 AGAAGCCAACTCACGCACAC 61.160 55.000 0.00 0.00 0.00 3.82
24 25 1.146041 AGAAGCCAACTCACGCACA 59.854 52.632 0.00 0.00 0.00 4.57
25 26 0.880278 TCAGAAGCCAACTCACGCAC 60.880 55.000 0.00 0.00 0.00 5.34
26 27 0.880278 GTCAGAAGCCAACTCACGCA 60.880 55.000 0.00 0.00 0.00 5.24
27 28 1.862806 GTCAGAAGCCAACTCACGC 59.137 57.895 0.00 0.00 0.00 5.34
28 29 0.318699 TCGTCAGAAGCCAACTCACG 60.319 55.000 0.00 0.00 0.00 4.35
29 30 2.086054 ATCGTCAGAAGCCAACTCAC 57.914 50.000 0.00 0.00 0.00 3.51
30 31 2.807967 CAAATCGTCAGAAGCCAACTCA 59.192 45.455 0.00 0.00 0.00 3.41
31 32 3.067106 TCAAATCGTCAGAAGCCAACTC 58.933 45.455 0.00 0.00 0.00 3.01
32 33 3.126001 TCAAATCGTCAGAAGCCAACT 57.874 42.857 0.00 0.00 0.00 3.16
33 34 4.008539 GATCAAATCGTCAGAAGCCAAC 57.991 45.455 0.00 0.00 0.00 3.77
46 47 3.057806 ACGTTTTTCCCCACGATCAAATC 60.058 43.478 0.00 0.00 39.76 2.17
47 48 2.888414 ACGTTTTTCCCCACGATCAAAT 59.112 40.909 0.00 0.00 39.76 2.32
48 49 2.033550 CACGTTTTTCCCCACGATCAAA 59.966 45.455 0.00 0.00 39.76 2.69
49 50 1.604755 CACGTTTTTCCCCACGATCAA 59.395 47.619 0.00 0.00 39.76 2.57
50 51 1.231221 CACGTTTTTCCCCACGATCA 58.769 50.000 0.00 0.00 39.76 2.92
51 52 0.519961 CCACGTTTTTCCCCACGATC 59.480 55.000 0.00 0.00 39.76 3.69
52 53 0.891904 CCCACGTTTTTCCCCACGAT 60.892 55.000 0.00 0.00 39.76 3.73
53 54 1.526455 CCCACGTTTTTCCCCACGA 60.526 57.895 0.00 0.00 39.76 4.35
54 55 1.526455 TCCCACGTTTTTCCCCACG 60.526 57.895 0.00 0.00 42.29 4.94
55 56 1.788067 CGTCCCACGTTTTTCCCCAC 61.788 60.000 0.00 0.00 36.74 4.61
56 57 1.526455 CGTCCCACGTTTTTCCCCA 60.526 57.895 0.00 0.00 36.74 4.96
57 58 3.347168 CGTCCCACGTTTTTCCCC 58.653 61.111 0.00 0.00 36.74 4.81
67 68 3.606065 CTGTCCGTCGACGTCCCAC 62.606 68.421 33.49 23.47 42.37 4.61
68 69 3.359523 CTGTCCGTCGACGTCCCA 61.360 66.667 33.49 24.26 42.37 4.37
69 70 4.112341 CCTGTCCGTCGACGTCCC 62.112 72.222 33.49 21.33 42.37 4.46
70 71 4.773117 GCCTGTCCGTCGACGTCC 62.773 72.222 33.49 23.67 42.37 4.79
71 72 4.773117 GGCCTGTCCGTCGACGTC 62.773 72.222 33.49 25.41 42.37 4.34
80 81 2.357517 CAGTCACACGGCCTGTCC 60.358 66.667 0.00 0.00 0.00 4.02
81 82 2.357517 CCAGTCACACGGCCTGTC 60.358 66.667 0.00 0.00 0.00 3.51
82 83 3.941188 CCCAGTCACACGGCCTGT 61.941 66.667 0.00 0.95 0.00 4.00
83 84 3.476031 AACCCAGTCACACGGCCTG 62.476 63.158 0.00 0.21 0.00 4.85
84 85 3.168528 AACCCAGTCACACGGCCT 61.169 61.111 0.00 0.00 0.00 5.19
85 86 2.978010 CAACCCAGTCACACGGCC 60.978 66.667 0.00 0.00 0.00 6.13
86 87 3.660111 GCAACCCAGTCACACGGC 61.660 66.667 0.00 0.00 0.00 5.68
87 88 2.958578 AAGGCAACCCAGTCACACGG 62.959 60.000 0.00 0.00 37.17 4.94
88 89 1.525995 AAGGCAACCCAGTCACACG 60.526 57.895 0.00 0.00 37.17 4.49
89 90 1.455383 CCAAGGCAACCCAGTCACAC 61.455 60.000 0.00 0.00 37.17 3.82
90 91 1.152777 CCAAGGCAACCCAGTCACA 60.153 57.895 0.00 0.00 37.17 3.58
91 92 1.903404 CCCAAGGCAACCCAGTCAC 60.903 63.158 0.00 0.00 37.17 3.67
92 93 1.434513 ATCCCAAGGCAACCCAGTCA 61.435 55.000 0.00 0.00 37.17 3.41
93 94 0.967380 CATCCCAAGGCAACCCAGTC 60.967 60.000 0.00 0.00 37.17 3.51
94 95 1.077265 CATCCCAAGGCAACCCAGT 59.923 57.895 0.00 0.00 37.17 4.00
95 96 1.683365 CCATCCCAAGGCAACCCAG 60.683 63.158 0.00 0.00 37.17 4.45
96 97 2.444696 CCATCCCAAGGCAACCCA 59.555 61.111 0.00 0.00 37.17 4.51
97 98 1.984026 CACCATCCCAAGGCAACCC 60.984 63.158 0.00 0.00 37.17 4.11
98 99 1.984026 CCACCATCCCAAGGCAACC 60.984 63.158 0.00 0.00 37.17 3.77
99 100 1.984026 CCCACCATCCCAAGGCAAC 60.984 63.158 0.00 0.00 0.00 4.17
100 101 2.444696 CCCACCATCCCAAGGCAA 59.555 61.111 0.00 0.00 0.00 4.52
101 102 4.380945 GCCCACCATCCCAAGGCA 62.381 66.667 0.00 0.00 43.32 4.75
102 103 3.607084 AAGCCCACCATCCCAAGGC 62.607 63.158 0.00 0.00 44.20 4.35
103 104 1.380380 GAAGCCCACCATCCCAAGG 60.380 63.158 0.00 0.00 0.00 3.61
104 105 0.251742 TTGAAGCCCACCATCCCAAG 60.252 55.000 0.00 0.00 0.00 3.61
105 106 0.413037 ATTGAAGCCCACCATCCCAA 59.587 50.000 0.00 0.00 0.00 4.12
106 107 0.413037 AATTGAAGCCCACCATCCCA 59.587 50.000 0.00 0.00 0.00 4.37
107 108 1.571955 AAATTGAAGCCCACCATCCC 58.428 50.000 0.00 0.00 0.00 3.85
108 109 3.337358 CAAAAATTGAAGCCCACCATCC 58.663 45.455 0.00 0.00 0.00 3.51
109 110 3.337358 CCAAAAATTGAAGCCCACCATC 58.663 45.455 0.00 0.00 0.00 3.51
110 111 2.040145 CCCAAAAATTGAAGCCCACCAT 59.960 45.455 0.00 0.00 0.00 3.55
111 112 1.419387 CCCAAAAATTGAAGCCCACCA 59.581 47.619 0.00 0.00 0.00 4.17
112 113 1.696884 TCCCAAAAATTGAAGCCCACC 59.303 47.619 0.00 0.00 0.00 4.61
113 114 3.007831 TCATCCCAAAAATTGAAGCCCAC 59.992 43.478 0.00 0.00 0.00 4.61
114 115 3.246301 TCATCCCAAAAATTGAAGCCCA 58.754 40.909 0.00 0.00 0.00 5.36
115 116 3.979101 TCATCCCAAAAATTGAAGCCC 57.021 42.857 0.00 0.00 0.00 5.19
116 117 3.624410 GCATCATCCCAAAAATTGAAGCC 59.376 43.478 0.00 0.00 29.20 4.35
117 118 4.255301 TGCATCATCCCAAAAATTGAAGC 58.745 39.130 0.00 0.00 34.40 3.86
118 119 4.873827 CCTGCATCATCCCAAAAATTGAAG 59.126 41.667 0.00 0.00 0.00 3.02
119 120 4.834534 CCTGCATCATCCCAAAAATTGAA 58.165 39.130 0.00 0.00 0.00 2.69
120 121 3.369681 GCCTGCATCATCCCAAAAATTGA 60.370 43.478 0.00 0.00 0.00 2.57
121 122 2.940410 GCCTGCATCATCCCAAAAATTG 59.060 45.455 0.00 0.00 0.00 2.32
122 123 2.419021 CGCCTGCATCATCCCAAAAATT 60.419 45.455 0.00 0.00 0.00 1.82
123 124 1.137479 CGCCTGCATCATCCCAAAAAT 59.863 47.619 0.00 0.00 0.00 1.82
124 125 0.531657 CGCCTGCATCATCCCAAAAA 59.468 50.000 0.00 0.00 0.00 1.94
125 126 0.611618 ACGCCTGCATCATCCCAAAA 60.612 50.000 0.00 0.00 0.00 2.44
126 127 1.001020 ACGCCTGCATCATCCCAAA 60.001 52.632 0.00 0.00 0.00 3.28
127 128 1.750018 CACGCCTGCATCATCCCAA 60.750 57.895 0.00 0.00 0.00 4.12
128 129 2.124612 CACGCCTGCATCATCCCA 60.125 61.111 0.00 0.00 0.00 4.37
129 130 2.903855 CCACGCCTGCATCATCCC 60.904 66.667 0.00 0.00 0.00 3.85
130 131 3.589881 GCCACGCCTGCATCATCC 61.590 66.667 0.00 0.00 0.00 3.51
131 132 3.589881 GGCCACGCCTGCATCATC 61.590 66.667 0.00 0.00 46.69 2.92
145 146 4.557605 CATCACGCGCAATGGGCC 62.558 66.667 16.62 0.00 40.31 5.80
146 147 4.557605 CCATCACGCGCAATGGGC 62.558 66.667 25.22 12.54 39.04 5.36
147 148 2.699768 AACCATCACGCGCAATGGG 61.700 57.895 31.84 19.74 45.59 4.00
148 149 1.514657 CAACCATCACGCGCAATGG 60.515 57.895 28.98 28.98 46.53 3.16
149 150 0.794229 GACAACCATCACGCGCAATG 60.794 55.000 5.73 10.38 0.00 2.82
150 151 1.501741 GACAACCATCACGCGCAAT 59.498 52.632 5.73 0.00 0.00 3.56
151 152 2.942879 GACAACCATCACGCGCAA 59.057 55.556 5.73 0.00 0.00 4.85
152 153 2.750715 TACGACAACCATCACGCGCA 62.751 55.000 5.73 0.00 0.00 6.09
153 154 1.418342 ATACGACAACCATCACGCGC 61.418 55.000 5.73 0.00 0.00 6.86
154 155 0.297525 CATACGACAACCATCACGCG 59.702 55.000 3.53 3.53 0.00 6.01
155 156 1.635844 TCATACGACAACCATCACGC 58.364 50.000 0.00 0.00 0.00 5.34
156 157 2.603110 CCTTCATACGACAACCATCACG 59.397 50.000 0.00 0.00 0.00 4.35
157 158 2.936498 CCCTTCATACGACAACCATCAC 59.064 50.000 0.00 0.00 0.00 3.06
158 159 2.835156 TCCCTTCATACGACAACCATCA 59.165 45.455 0.00 0.00 0.00 3.07
159 160 3.458189 CTCCCTTCATACGACAACCATC 58.542 50.000 0.00 0.00 0.00 3.51
160 161 2.170607 CCTCCCTTCATACGACAACCAT 59.829 50.000 0.00 0.00 0.00 3.55
161 162 1.553248 CCTCCCTTCATACGACAACCA 59.447 52.381 0.00 0.00 0.00 3.67
162 163 1.553704 ACCTCCCTTCATACGACAACC 59.446 52.381 0.00 0.00 0.00 3.77
163 164 2.618053 CACCTCCCTTCATACGACAAC 58.382 52.381 0.00 0.00 0.00 3.32
164 165 1.553248 CCACCTCCCTTCATACGACAA 59.447 52.381 0.00 0.00 0.00 3.18
165 166 1.191535 CCACCTCCCTTCATACGACA 58.808 55.000 0.00 0.00 0.00 4.35
166 167 0.464452 CCCACCTCCCTTCATACGAC 59.536 60.000 0.00 0.00 0.00 4.34
167 168 0.689745 CCCCACCTCCCTTCATACGA 60.690 60.000 0.00 0.00 0.00 3.43
168 169 0.689745 TCCCCACCTCCCTTCATACG 60.690 60.000 0.00 0.00 0.00 3.06
169 170 1.700186 GATCCCCACCTCCCTTCATAC 59.300 57.143 0.00 0.00 0.00 2.39
170 171 1.761371 CGATCCCCACCTCCCTTCATA 60.761 57.143 0.00 0.00 0.00 2.15
171 172 1.056700 CGATCCCCACCTCCCTTCAT 61.057 60.000 0.00 0.00 0.00 2.57
172 173 1.689233 CGATCCCCACCTCCCTTCA 60.689 63.158 0.00 0.00 0.00 3.02
173 174 0.981277 TTCGATCCCCACCTCCCTTC 60.981 60.000 0.00 0.00 0.00 3.46
174 175 1.082206 TTCGATCCCCACCTCCCTT 59.918 57.895 0.00 0.00 0.00 3.95
175 176 1.689582 GTTCGATCCCCACCTCCCT 60.690 63.158 0.00 0.00 0.00 4.20
176 177 2.908796 GTTCGATCCCCACCTCCC 59.091 66.667 0.00 0.00 0.00 4.30
177 178 2.017559 CTCGTTCGATCCCCACCTCC 62.018 65.000 0.00 0.00 0.00 4.30
178 179 1.437986 CTCGTTCGATCCCCACCTC 59.562 63.158 0.00 0.00 0.00 3.85
179 180 2.058595 CCTCGTTCGATCCCCACCT 61.059 63.158 0.00 0.00 0.00 4.00
180 181 2.294132 GACCTCGTTCGATCCCCACC 62.294 65.000 0.00 0.00 0.00 4.61
181 182 1.141234 GACCTCGTTCGATCCCCAC 59.859 63.158 0.00 0.00 0.00 4.61
182 183 2.412323 CGACCTCGTTCGATCCCCA 61.412 63.158 0.00 0.00 41.78 4.96
183 184 1.660560 TTCGACCTCGTTCGATCCCC 61.661 60.000 7.23 0.00 46.94 4.81
184 185 0.525029 GTTCGACCTCGTTCGATCCC 60.525 60.000 7.23 0.00 46.94 3.85
185 186 0.525029 GGTTCGACCTCGTTCGATCC 60.525 60.000 13.96 13.96 46.94 3.36
186 187 0.169672 TGGTTCGACCTCGTTCGATC 59.830 55.000 7.23 6.80 46.94 3.69
187 188 0.815734 ATGGTTCGACCTCGTTCGAT 59.184 50.000 7.23 0.00 46.94 3.59
188 189 0.169672 GATGGTTCGACCTCGTTCGA 59.830 55.000 5.77 3.06 46.12 3.71
189 190 0.109458 TGATGGTTCGACCTCGTTCG 60.109 55.000 5.77 0.00 39.58 3.95
190 191 1.347320 GTGATGGTTCGACCTCGTTC 58.653 55.000 5.77 0.35 39.58 3.95
191 192 0.388134 CGTGATGGTTCGACCTCGTT 60.388 55.000 5.77 0.00 39.58 3.85
192 193 1.211969 CGTGATGGTTCGACCTCGT 59.788 57.895 5.77 0.00 39.58 4.18
193 194 0.797249 GTCGTGATGGTTCGACCTCG 60.797 60.000 6.46 0.00 46.83 4.63
194 195 3.031660 GTCGTGATGGTTCGACCTC 57.968 57.895 6.46 2.63 46.83 3.85
198 199 3.096541 GAACGTCGTGATGGTTCGA 57.903 52.632 0.00 0.00 31.82 3.71
200 201 1.582502 GATCGAACGTCGTGATGGTTC 59.417 52.381 0.00 6.67 41.35 3.62
201 202 1.625616 GATCGAACGTCGTGATGGTT 58.374 50.000 0.00 0.00 41.35 3.67
202 203 0.179145 GGATCGAACGTCGTGATGGT 60.179 55.000 0.00 0.00 41.35 3.55
203 204 0.870307 GGGATCGAACGTCGTGATGG 60.870 60.000 0.00 0.00 41.35 3.51
204 205 0.870307 GGGGATCGAACGTCGTGATG 60.870 60.000 0.00 0.00 41.35 3.07
205 206 1.436336 GGGGATCGAACGTCGTGAT 59.564 57.895 0.00 0.00 41.35 3.06
206 207 2.703798 GGGGGATCGAACGTCGTGA 61.704 63.158 0.00 0.00 41.35 4.35
207 208 2.202703 GGGGGATCGAACGTCGTG 60.203 66.667 0.00 0.00 41.35 4.35
208 209 1.538687 AAAGGGGGATCGAACGTCGT 61.539 55.000 0.00 0.00 41.35 4.34
209 210 0.457035 TAAAGGGGGATCGAACGTCG 59.543 55.000 0.00 0.00 42.10 5.12
210 211 2.678471 TTAAAGGGGGATCGAACGTC 57.322 50.000 0.00 0.00 0.00 4.34
211 212 3.708121 ACTATTAAAGGGGGATCGAACGT 59.292 43.478 0.00 0.00 0.00 3.99
212 213 4.332428 ACTATTAAAGGGGGATCGAACG 57.668 45.455 0.00 0.00 0.00 3.95
213 214 6.492772 TCTCTACTATTAAAGGGGGATCGAAC 59.507 42.308 0.00 0.00 0.00 3.95
214 215 6.617538 TCTCTACTATTAAAGGGGGATCGAA 58.382 40.000 0.00 0.00 0.00 3.71
215 216 6.210172 TCTCTACTATTAAAGGGGGATCGA 57.790 41.667 0.00 0.00 0.00 3.59
216 217 8.468399 GTTATCTCTACTATTAAAGGGGGATCG 58.532 40.741 0.00 0.00 0.00 3.69
217 218 9.322769 TGTTATCTCTACTATTAAAGGGGGATC 57.677 37.037 0.00 0.00 0.00 3.36
218 219 9.860393 ATGTTATCTCTACTATTAAAGGGGGAT 57.140 33.333 0.00 0.00 0.00 3.85
219 220 9.101325 CATGTTATCTCTACTATTAAAGGGGGA 57.899 37.037 0.00 0.00 0.00 4.81
220 221 9.101325 TCATGTTATCTCTACTATTAAAGGGGG 57.899 37.037 0.00 0.00 0.00 5.40
257 258 5.706833 GCACATATGGGTTGATACATGATCA 59.293 40.000 6.86 0.00 43.11 2.92
258 259 5.706833 TGCACATATGGGTTGATACATGATC 59.293 40.000 6.86 0.00 34.84 2.92
259 260 5.633117 TGCACATATGGGTTGATACATGAT 58.367 37.500 6.86 0.00 0.00 2.45
260 261 5.046288 TGCACATATGGGTTGATACATGA 57.954 39.130 6.86 0.00 0.00 3.07
261 262 5.532032 TCTTGCACATATGGGTTGATACATG 59.468 40.000 6.86 0.00 0.00 3.21
262 263 5.693961 TCTTGCACATATGGGTTGATACAT 58.306 37.500 6.86 0.00 0.00 2.29
263 264 5.109500 TCTTGCACATATGGGTTGATACA 57.891 39.130 6.86 0.00 0.00 2.29
264 265 5.356751 TGTTCTTGCACATATGGGTTGATAC 59.643 40.000 6.86 1.26 0.00 2.24
265 266 5.504853 TGTTCTTGCACATATGGGTTGATA 58.495 37.500 6.86 0.00 0.00 2.15
266 267 4.343231 TGTTCTTGCACATATGGGTTGAT 58.657 39.130 6.86 0.00 0.00 2.57
267 268 3.758023 CTGTTCTTGCACATATGGGTTGA 59.242 43.478 6.86 0.00 0.00 3.18
268 269 3.758023 TCTGTTCTTGCACATATGGGTTG 59.242 43.478 6.86 0.00 0.00 3.77
269 270 4.012374 CTCTGTTCTTGCACATATGGGTT 58.988 43.478 6.86 0.00 0.00 4.11
270 271 3.614092 CTCTGTTCTTGCACATATGGGT 58.386 45.455 6.86 0.00 0.00 4.51
271 272 2.357009 GCTCTGTTCTTGCACATATGGG 59.643 50.000 7.80 3.61 0.00 4.00
272 273 2.357009 GGCTCTGTTCTTGCACATATGG 59.643 50.000 7.80 0.00 0.00 2.74
273 274 2.031314 CGGCTCTGTTCTTGCACATATG 59.969 50.000 0.00 0.00 0.00 1.78
274 275 2.093500 TCGGCTCTGTTCTTGCACATAT 60.093 45.455 0.00 0.00 0.00 1.78
275 276 1.275010 TCGGCTCTGTTCTTGCACATA 59.725 47.619 0.00 0.00 0.00 2.29
276 277 0.035317 TCGGCTCTGTTCTTGCACAT 59.965 50.000 0.00 0.00 0.00 3.21
277 278 0.035317 ATCGGCTCTGTTCTTGCACA 59.965 50.000 0.00 0.00 0.00 4.57
278 279 0.445436 CATCGGCTCTGTTCTTGCAC 59.555 55.000 0.00 0.00 0.00 4.57
279 280 0.035317 ACATCGGCTCTGTTCTTGCA 59.965 50.000 0.00 0.00 0.00 4.08
280 281 0.445436 CACATCGGCTCTGTTCTTGC 59.555 55.000 0.00 0.00 0.00 4.01
281 282 0.445436 GCACATCGGCTCTGTTCTTG 59.555 55.000 0.00 0.00 0.00 3.02
282 283 0.035317 TGCACATCGGCTCTGTTCTT 59.965 50.000 0.00 0.00 34.04 2.52
283 284 0.251354 ATGCACATCGGCTCTGTTCT 59.749 50.000 0.00 0.00 34.04 3.01
284 285 0.654683 GATGCACATCGGCTCTGTTC 59.345 55.000 0.00 0.00 34.04 3.18
285 286 0.036105 TGATGCACATCGGCTCTGTT 60.036 50.000 6.17 0.00 40.63 3.16
286 287 0.179702 ATGATGCACATCGGCTCTGT 59.820 50.000 6.17 0.00 40.63 3.41
287 288 2.159327 TATGATGCACATCGGCTCTG 57.841 50.000 6.17 0.00 40.63 3.35
288 289 2.103771 ACTTATGATGCACATCGGCTCT 59.896 45.455 6.17 0.00 40.63 4.09
289 290 2.487934 ACTTATGATGCACATCGGCTC 58.512 47.619 6.17 0.00 40.63 4.70
290 291 2.627515 ACTTATGATGCACATCGGCT 57.372 45.000 6.17 0.00 40.63 5.52
291 292 2.613595 TGAACTTATGATGCACATCGGC 59.386 45.455 6.17 0.00 40.63 5.54
292 293 6.365839 GTTATGAACTTATGATGCACATCGG 58.634 40.000 6.17 3.61 40.63 4.18
293 294 6.067039 CGTTATGAACTTATGATGCACATCG 58.933 40.000 6.17 2.45 40.63 3.84
294 295 6.948353 ACGTTATGAACTTATGATGCACATC 58.052 36.000 3.61 3.61 40.07 3.06
295 296 6.925610 ACGTTATGAACTTATGATGCACAT 57.074 33.333 0.00 0.00 42.39 3.21
296 297 6.735678 AACGTTATGAACTTATGATGCACA 57.264 33.333 0.00 0.00 0.00 4.57
297 298 9.793245 GTATAACGTTATGAACTTATGATGCAC 57.207 33.333 27.15 10.76 0.00 4.57
298 299 8.984764 GGTATAACGTTATGAACTTATGATGCA 58.015 33.333 27.15 2.69 0.00 3.96
299 300 8.440833 GGGTATAACGTTATGAACTTATGATGC 58.559 37.037 27.15 5.15 0.00 3.91
300 301 8.644619 CGGGTATAACGTTATGAACTTATGATG 58.355 37.037 27.15 4.49 0.00 3.07
301 302 7.330208 GCGGGTATAACGTTATGAACTTATGAT 59.670 37.037 27.15 4.25 0.00 2.45
302 303 6.642131 GCGGGTATAACGTTATGAACTTATGA 59.358 38.462 27.15 4.49 0.00 2.15
303 304 6.421501 TGCGGGTATAACGTTATGAACTTATG 59.578 38.462 27.15 11.67 0.00 1.90
304 305 6.421801 GTGCGGGTATAACGTTATGAACTTAT 59.578 38.462 27.15 6.15 0.00 1.73
305 306 5.748152 GTGCGGGTATAACGTTATGAACTTA 59.252 40.000 27.15 6.59 0.00 2.24
306 307 4.567959 GTGCGGGTATAACGTTATGAACTT 59.432 41.667 27.15 6.58 0.00 2.66
307 308 4.114794 GTGCGGGTATAACGTTATGAACT 58.885 43.478 27.15 7.28 0.00 3.01
308 309 4.026310 CAGTGCGGGTATAACGTTATGAAC 60.026 45.833 27.15 18.84 0.00 3.18
309 310 4.114073 CAGTGCGGGTATAACGTTATGAA 58.886 43.478 27.15 8.71 0.00 2.57
310 311 3.491276 CCAGTGCGGGTATAACGTTATGA 60.491 47.826 27.15 11.14 0.00 2.15
311 312 2.798283 CCAGTGCGGGTATAACGTTATG 59.202 50.000 27.15 13.65 0.00 1.90
312 313 2.431782 ACCAGTGCGGGTATAACGTTAT 59.568 45.455 23.36 23.36 40.07 1.89
313 314 1.824230 ACCAGTGCGGGTATAACGTTA 59.176 47.619 11.02 11.02 40.07 3.18
314 315 0.609662 ACCAGTGCGGGTATAACGTT 59.390 50.000 5.88 5.88 40.07 3.99
315 316 1.406539 CTACCAGTGCGGGTATAACGT 59.593 52.381 1.93 0.00 42.33 3.99
316 317 1.866880 GCTACCAGTGCGGGTATAACG 60.867 57.143 1.93 0.00 42.33 3.18
317 318 1.137479 TGCTACCAGTGCGGGTATAAC 59.863 52.381 1.93 0.00 42.33 1.89
318 319 1.411246 CTGCTACCAGTGCGGGTATAA 59.589 52.381 1.93 0.00 42.33 0.98
319 320 1.037493 CTGCTACCAGTGCGGGTATA 58.963 55.000 1.93 0.00 42.33 1.47
320 321 1.823295 CTGCTACCAGTGCGGGTAT 59.177 57.895 1.93 0.00 42.33 2.73
321 322 3.294750 CTGCTACCAGTGCGGGTA 58.705 61.111 1.60 1.60 42.42 3.69
358 359 0.902531 TGTGGGTTTTCCGCCAAAAA 59.097 45.000 0.00 0.00 45.26 1.94
359 360 0.175989 GTGTGGGTTTTCCGCCAAAA 59.824 50.000 0.00 0.00 45.26 2.44
360 361 0.970937 TGTGTGGGTTTTCCGCCAAA 60.971 50.000 0.00 0.00 45.26 3.28
361 362 0.970937 TTGTGTGGGTTTTCCGCCAA 60.971 50.000 0.00 0.00 45.26 4.52
362 363 0.757188 ATTGTGTGGGTTTTCCGCCA 60.757 50.000 0.00 0.00 45.26 5.69
363 364 1.249407 TATTGTGTGGGTTTTCCGCC 58.751 50.000 0.00 0.00 45.26 6.13
364 365 3.586100 AATATTGTGTGGGTTTTCCGC 57.414 42.857 0.00 0.00 46.03 5.54
365 366 5.890424 ACTAATATTGTGTGGGTTTTCCG 57.110 39.130 0.00 0.00 41.82 4.30
394 395 9.566432 AGCGAGGAGAATGATTCTTTATTTTAT 57.434 29.630 9.35 0.00 40.87 1.40
404 405 6.670077 AAACTAAAGCGAGGAGAATGATTC 57.330 37.500 0.00 0.00 0.00 2.52
551 561 9.932207 AATCGTCAAAATCCGTGGTATATATAA 57.068 29.630 0.00 0.00 0.00 0.98
552 562 9.361315 CAATCGTCAAAATCCGTGGTATATATA 57.639 33.333 0.00 0.00 0.00 0.86
553 563 7.333423 CCAATCGTCAAAATCCGTGGTATATAT 59.667 37.037 0.00 0.00 0.00 0.86
554 564 6.647481 CCAATCGTCAAAATCCGTGGTATATA 59.353 38.462 0.00 0.00 0.00 0.86
555 565 5.468746 CCAATCGTCAAAATCCGTGGTATAT 59.531 40.000 0.00 0.00 0.00 0.86
556 566 4.812091 CCAATCGTCAAAATCCGTGGTATA 59.188 41.667 0.00 0.00 0.00 1.47
591 601 6.690194 ATTAAAGTAGCATGAGCCTTGAAG 57.310 37.500 0.00 0.00 43.56 3.02
628 638 5.511202 CCTGCTTATTTCTTTTGAGGGCAAA 60.511 40.000 0.00 0.00 41.97 3.68
629 639 4.021192 CCTGCTTATTTCTTTTGAGGGCAA 60.021 41.667 0.00 0.00 0.00 4.52
630 640 3.511146 CCTGCTTATTTCTTTTGAGGGCA 59.489 43.478 0.00 0.00 0.00 5.36
631 641 3.511540 ACCTGCTTATTTCTTTTGAGGGC 59.488 43.478 0.00 0.00 0.00 5.19
632 642 5.728637 AACCTGCTTATTTCTTTTGAGGG 57.271 39.130 0.00 0.00 0.00 4.30
678 688 0.795735 AACGCACTAACCGTCGATCG 60.796 55.000 9.36 9.36 38.06 3.69
679 689 0.912528 GAACGCACTAACCGTCGATC 59.087 55.000 0.00 0.00 38.06 3.69
680 690 0.241749 TGAACGCACTAACCGTCGAT 59.758 50.000 0.00 0.00 38.06 3.59
681 691 0.386352 CTGAACGCACTAACCGTCGA 60.386 55.000 0.00 0.00 38.06 4.20
813 827 3.515286 GCGTCGTCCCCGATCTCA 61.515 66.667 0.00 0.00 46.30 3.27
1107 1121 2.693797 TGGTGACGAACGAGTAGAAC 57.306 50.000 0.14 0.00 0.00 3.01
1233 1250 3.978571 GAGCTTCTTGGGCCCGTCC 62.979 68.421 19.37 1.64 0.00 4.79
1245 1262 1.673665 CACAGCCAGGTGGAGCTTC 60.674 63.158 0.00 0.00 37.18 3.86
1638 1670 3.531538 GGCGTAGATCTGATGGTTTTGA 58.468 45.455 5.18 0.00 0.00 2.69
1689 1721 3.488721 CGATCGGTATCTCGGTCAAAGTT 60.489 47.826 7.38 0.00 39.99 2.66
1829 1861 9.387123 CTTGTTCTTTTTCTTTGACTACTATGC 57.613 33.333 0.00 0.00 0.00 3.14
1878 1913 2.125912 CCCAGGTTCGTCAGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
2195 2246 4.211374 CACTTGGTTACTCTTGTTTCTCGG 59.789 45.833 0.00 0.00 0.00 4.63
2196 2247 4.211374 CCACTTGGTTACTCTTGTTTCTCG 59.789 45.833 0.00 0.00 0.00 4.04
2279 2356 7.381139 ACCAAAAATAATCTGCAAACTAACACG 59.619 33.333 0.00 0.00 0.00 4.49
2302 2379 2.942376 CGATATGCTGCCACTAAAACCA 59.058 45.455 0.00 0.00 0.00 3.67
2304 2381 4.142687 ACAACGATATGCTGCCACTAAAAC 60.143 41.667 0.00 0.00 0.00 2.43
2308 2385 2.935849 CAACAACGATATGCTGCCACTA 59.064 45.455 0.00 0.00 0.00 2.74
2309 2386 1.739466 CAACAACGATATGCTGCCACT 59.261 47.619 0.00 0.00 0.00 4.00
2310 2387 1.737236 TCAACAACGATATGCTGCCAC 59.263 47.619 0.00 0.00 0.00 5.01
2311 2388 2.106477 TCAACAACGATATGCTGCCA 57.894 45.000 0.00 0.00 0.00 4.92
2313 2390 5.094812 TCAAAATCAACAACGATATGCTGC 58.905 37.500 0.00 0.00 0.00 5.25
2314 2391 6.317088 ACTCAAAATCAACAACGATATGCTG 58.683 36.000 0.00 0.00 0.00 4.41
2315 2392 6.500684 ACTCAAAATCAACAACGATATGCT 57.499 33.333 0.00 0.00 0.00 3.79
2316 2393 8.841444 ATTACTCAAAATCAACAACGATATGC 57.159 30.769 0.00 0.00 0.00 3.14
2320 2397 9.743057 TCAAAATTACTCAAAATCAACAACGAT 57.257 25.926 0.00 0.00 0.00 3.73
2332 2409 9.179909 TGACCACTACTTTCAAAATTACTCAAA 57.820 29.630 0.00 0.00 0.00 2.69
2333 2410 8.740123 TGACCACTACTTTCAAAATTACTCAA 57.260 30.769 0.00 0.00 0.00 3.02
2334 2411 8.918202 ATGACCACTACTTTCAAAATTACTCA 57.082 30.769 0.00 0.00 0.00 3.41
2335 2412 9.612620 CAATGACCACTACTTTCAAAATTACTC 57.387 33.333 0.00 0.00 0.00 2.59
2336 2413 9.349713 TCAATGACCACTACTTTCAAAATTACT 57.650 29.630 0.00 0.00 0.00 2.24
2341 2418 8.664798 CGATATCAATGACCACTACTTTCAAAA 58.335 33.333 3.12 0.00 0.00 2.44
2342 2419 7.822334 ACGATATCAATGACCACTACTTTCAAA 59.178 33.333 3.12 0.00 0.00 2.69
2343 2420 7.327975 ACGATATCAATGACCACTACTTTCAA 58.672 34.615 3.12 0.00 0.00 2.69
2344 2421 6.873997 ACGATATCAATGACCACTACTTTCA 58.126 36.000 3.12 0.00 0.00 2.69
2345 2422 7.277981 ACAACGATATCAATGACCACTACTTTC 59.722 37.037 10.75 0.00 0.00 2.62
2346 2423 7.103641 ACAACGATATCAATGACCACTACTTT 58.896 34.615 10.75 0.00 0.00 2.66
2347 2424 6.640518 ACAACGATATCAATGACCACTACTT 58.359 36.000 10.75 0.00 0.00 2.24
2348 2425 6.222038 ACAACGATATCAATGACCACTACT 57.778 37.500 10.75 0.00 0.00 2.57
2434 2512 2.073056 TGAATTTCACCATCACGTCCG 58.927 47.619 0.00 0.00 0.00 4.79
2467 2545 8.827177 TGGAGTATTATTTATTGAGCCTAACG 57.173 34.615 0.00 0.00 0.00 3.18
2472 2550 6.879458 ACGGATGGAGTATTATTTATTGAGCC 59.121 38.462 0.00 0.00 0.00 4.70
2483 2561 9.717994 TTATATTATGGGACGGATGGAGTATTA 57.282 33.333 0.00 0.00 0.00 0.98
2488 2566 5.817816 GCTTTATATTATGGGACGGATGGAG 59.182 44.000 0.00 0.00 0.00 3.86
2489 2567 5.625886 CGCTTTATATTATGGGACGGATGGA 60.626 44.000 0.00 0.00 0.00 3.41
2490 2568 4.570772 CGCTTTATATTATGGGACGGATGG 59.429 45.833 0.00 0.00 0.00 3.51
2491 2569 5.175859 ACGCTTTATATTATGGGACGGATG 58.824 41.667 0.00 0.00 0.00 3.51
2492 2570 5.416271 ACGCTTTATATTATGGGACGGAT 57.584 39.130 0.00 0.00 0.00 4.18
2493 2571 4.877378 ACGCTTTATATTATGGGACGGA 57.123 40.909 0.00 0.00 0.00 4.69
2494 2572 5.934935 AAACGCTTTATATTATGGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
2495 2573 7.375017 GTCAAAAACGCTTTATATTATGGGACG 59.625 37.037 0.00 0.00 0.00 4.79
2496 2574 8.185505 TGTCAAAAACGCTTTATATTATGGGAC 58.814 33.333 0.00 0.00 0.00 4.46
2497 2575 8.185505 GTGTCAAAAACGCTTTATATTATGGGA 58.814 33.333 0.00 0.00 35.42 4.37
2498 2576 7.971168 TGTGTCAAAAACGCTTTATATTATGGG 59.029 33.333 0.00 0.00 39.23 4.00
2499 2577 8.903570 TGTGTCAAAAACGCTTTATATTATGG 57.096 30.769 0.00 0.00 39.23 2.74
2503 2581 9.909043 GTTTTTGTGTCAAAAACGCTTTATATT 57.091 25.926 24.53 0.00 39.40 1.28
2526 2604 9.326413 CCTCTGTCCGATAATATAAAAGTGTTT 57.674 33.333 0.00 0.00 0.00 2.83
2527 2605 7.931948 CCCTCTGTCCGATAATATAAAAGTGTT 59.068 37.037 0.00 0.00 0.00 3.32
2528 2606 7.289317 TCCCTCTGTCCGATAATATAAAAGTGT 59.711 37.037 0.00 0.00 0.00 3.55
2529 2607 7.667557 TCCCTCTGTCCGATAATATAAAAGTG 58.332 38.462 0.00 0.00 0.00 3.16
2530 2608 7.509659 ACTCCCTCTGTCCGATAATATAAAAGT 59.490 37.037 0.00 0.00 0.00 2.66
2531 2609 7.897864 ACTCCCTCTGTCCGATAATATAAAAG 58.102 38.462 0.00 0.00 0.00 2.27
2532 2610 7.850935 ACTCCCTCTGTCCGATAATATAAAA 57.149 36.000 0.00 0.00 0.00 1.52
2533 2611 8.388589 TCTACTCCCTCTGTCCGATAATATAAA 58.611 37.037 0.00 0.00 0.00 1.40
2534 2612 7.925622 TCTACTCCCTCTGTCCGATAATATAA 58.074 38.462 0.00 0.00 0.00 0.98
2535 2613 7.506361 TCTACTCCCTCTGTCCGATAATATA 57.494 40.000 0.00 0.00 0.00 0.86
2536 2614 6.390048 TCTACTCCCTCTGTCCGATAATAT 57.610 41.667 0.00 0.00 0.00 1.28
2537 2615 5.837770 TCTACTCCCTCTGTCCGATAATA 57.162 43.478 0.00 0.00 0.00 0.98
2538 2616 4.726035 TCTACTCCCTCTGTCCGATAAT 57.274 45.455 0.00 0.00 0.00 1.28
2539 2617 4.726035 ATCTACTCCCTCTGTCCGATAA 57.274 45.455 0.00 0.00 0.00 1.75
2540 2618 4.726035 AATCTACTCCCTCTGTCCGATA 57.274 45.455 0.00 0.00 0.00 2.92
2541 2619 3.603965 AATCTACTCCCTCTGTCCGAT 57.396 47.619 0.00 0.00 0.00 4.18
2542 2620 3.053544 AGAAATCTACTCCCTCTGTCCGA 60.054 47.826 0.00 0.00 0.00 4.55
2543 2621 3.292460 AGAAATCTACTCCCTCTGTCCG 58.708 50.000 0.00 0.00 0.00 4.79
2544 2622 4.712337 TGAAGAAATCTACTCCCTCTGTCC 59.288 45.833 0.00 0.00 0.00 4.02
2545 2623 5.420739 ACTGAAGAAATCTACTCCCTCTGTC 59.579 44.000 0.00 0.00 0.00 3.51
2546 2624 5.337788 ACTGAAGAAATCTACTCCCTCTGT 58.662 41.667 0.00 0.00 0.00 3.41
2547 2625 5.930837 ACTGAAGAAATCTACTCCCTCTG 57.069 43.478 0.00 0.00 0.00 3.35
2548 2626 5.337975 GCAACTGAAGAAATCTACTCCCTCT 60.338 44.000 0.00 0.00 0.00 3.69
2549 2627 4.873259 GCAACTGAAGAAATCTACTCCCTC 59.127 45.833 0.00 0.00 0.00 4.30
2550 2628 4.534103 AGCAACTGAAGAAATCTACTCCCT 59.466 41.667 0.00 0.00 0.00 4.20
2551 2629 4.633565 CAGCAACTGAAGAAATCTACTCCC 59.366 45.833 0.00 0.00 32.44 4.30
2552 2630 5.350091 GTCAGCAACTGAAGAAATCTACTCC 59.650 44.000 0.00 0.00 42.46 3.85
2553 2631 5.928839 TGTCAGCAACTGAAGAAATCTACTC 59.071 40.000 0.00 0.00 42.46 2.59
2554 2632 5.858381 TGTCAGCAACTGAAGAAATCTACT 58.142 37.500 0.00 0.00 42.46 2.57
2555 2633 6.545504 TTGTCAGCAACTGAAGAAATCTAC 57.454 37.500 0.00 0.00 42.46 2.59
2556 2634 5.180117 GCTTGTCAGCAACTGAAGAAATCTA 59.820 40.000 0.00 0.00 46.49 1.98
2557 2635 4.023365 GCTTGTCAGCAACTGAAGAAATCT 60.023 41.667 0.00 0.00 46.49 2.40
2558 2636 4.225208 GCTTGTCAGCAACTGAAGAAATC 58.775 43.478 0.00 0.00 46.49 2.17
2559 2637 4.234530 GCTTGTCAGCAACTGAAGAAAT 57.765 40.909 0.00 0.00 46.49 2.17
2560 2638 3.698029 GCTTGTCAGCAACTGAAGAAA 57.302 42.857 0.00 0.00 46.49 2.52
2572 2650 9.678941 TTATACATAAAGATACGAGCTTGTCAG 57.321 33.333 10.71 0.00 0.00 3.51
2620 2698 9.250624 AGATCGTGCATATTTCTAAGTTCTAAC 57.749 33.333 0.00 0.00 0.00 2.34
2621 2699 9.249457 CAGATCGTGCATATTTCTAAGTTCTAA 57.751 33.333 0.00 0.00 0.00 2.10
2622 2700 8.803201 CAGATCGTGCATATTTCTAAGTTCTA 57.197 34.615 0.00 0.00 0.00 2.10
2623 2701 7.706281 CAGATCGTGCATATTTCTAAGTTCT 57.294 36.000 0.00 0.00 0.00 3.01
2641 2719 2.540265 ATAGGAGGCAAAGCAGATCG 57.460 50.000 0.00 0.00 0.00 3.69
2676 2754 5.553123 TGTACCACGTTTCTCATATTTGGT 58.447 37.500 0.00 0.00 39.25 3.67
2766 2844 0.106967 GGAGCCTCATTTGGTCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
2777 2855 2.088104 AGGATTATCGTGGAGCCTCA 57.912 50.000 0.00 0.00 0.00 3.86
2865 2943 9.565090 CTGAGGGAATAGATATGTGAATTTCAA 57.435 33.333 0.00 0.00 0.00 2.69
3095 3173 3.767673 AGTATGTTCACGGACACTGGTAT 59.232 43.478 0.00 0.00 31.30 2.73
3098 3176 2.337583 CAGTATGTTCACGGACACTGG 58.662 52.381 0.00 0.00 31.30 4.00
3227 3305 8.486210 AGGTGAAGCATGTGTTAGAAATCTATA 58.514 33.333 0.00 0.00 0.00 1.31
3228 3306 7.281774 CAGGTGAAGCATGTGTTAGAAATCTAT 59.718 37.037 0.00 0.00 0.00 1.98
3300 3378 1.705186 GGTACCATATGGGATGCACCT 59.295 52.381 25.55 4.63 41.15 4.00
3307 3385 5.363124 TTCTATCCTGGTACCATATGGGA 57.637 43.478 25.55 19.81 41.15 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.