Multiple sequence alignment - TraesCS2D01G594600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G594600 chr2D 100.000 2264 0 0 1 2264 648338435 648340698 0 4181
1 TraesCS2D01G594600 chr2D 94.861 1654 60 11 552 2180 634062527 634060874 0 2560
2 TraesCS2D01G594600 chr2D 94.344 1326 53 8 877 2180 417207938 417209263 0 2013
3 TraesCS2D01G594600 chr2D 94.682 677 15 7 552 1207 388077790 388077114 0 1031
4 TraesCS2D01G594600 chr3D 95.097 1652 54 12 552 2180 542835227 542836874 0 2577
5 TraesCS2D01G594600 chr3D 94.979 1653 59 10 552 2180 478120930 478122582 0 2571
6 TraesCS2D01G594600 chr3D 96.491 570 18 2 1 569 536127468 536128036 0 941
7 TraesCS2D01G594600 chr5D 94.982 1654 58 10 552 2180 238122702 238124355 0 2571
8 TraesCS2D01G594600 chr2B 94.374 1653 70 6 552 2181 663029064 663027412 0 2516
9 TraesCS2D01G594600 chr7D 94.374 1653 63 13 552 2181 116648741 116650386 0 2510
10 TraesCS2D01G594600 chr4D 94.310 1652 59 15 552 2180 130442401 130440762 0 2497
11 TraesCS2D01G594600 chr4D 96.820 566 13 4 1 566 58448721 58449281 0 941
12 TraesCS2D01G594600 chr5B 94.132 1653 68 13 552 2181 278890590 278892236 0 2488
13 TraesCS2D01G594600 chr5B 88.095 1512 119 23 552 2020 404177628 404176135 0 1738
14 TraesCS2D01G594600 chr1A 93.705 1652 80 10 552 2180 254401773 254403423 0 2453
15 TraesCS2D01G594600 chr6B 92.285 674 41 5 552 1216 74456412 74455741 0 946
16 TraesCS2D01G594600 chr6B 92.136 674 42 5 552 1216 74349226 74348555 0 941
17 TraesCS2D01G594600 chr6B 91.543 674 46 5 552 1216 74213581 74212910 0 918
18 TraesCS2D01G594600 chr6B 91.098 674 49 6 552 1216 74063334 74062663 0 902
19 TraesCS2D01G594600 chr5A 96.473 567 17 3 1 566 570990098 570989534 0 933
20 TraesCS2D01G594600 chr5A 93.939 594 28 7 1 592 272930344 272930931 0 891
21 TraesCS2D01G594600 chr3B 97.268 549 15 0 3 551 811388349 811388897 0 931
22 TraesCS2D01G594600 chr3B 97.268 549 15 0 3 551 811396984 811397532 0 931
23 TraesCS2D01G594600 chr3B 96.435 561 17 3 1 560 447729171 447728613 0 922
24 TraesCS2D01G594600 chr4A 95.361 582 25 2 1 580 559718128 559717547 0 924
25 TraesCS2D01G594600 chr7A 95.782 569 23 1 1 569 146670536 146671103 0 917


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G594600 chr2D 648338435 648340698 2263 False 4181 4181 100.000 1 2264 1 chr2D.!!$F2 2263
1 TraesCS2D01G594600 chr2D 634060874 634062527 1653 True 2560 2560 94.861 552 2180 1 chr2D.!!$R2 1628
2 TraesCS2D01G594600 chr2D 417207938 417209263 1325 False 2013 2013 94.344 877 2180 1 chr2D.!!$F1 1303
3 TraesCS2D01G594600 chr2D 388077114 388077790 676 True 1031 1031 94.682 552 1207 1 chr2D.!!$R1 655
4 TraesCS2D01G594600 chr3D 542835227 542836874 1647 False 2577 2577 95.097 552 2180 1 chr3D.!!$F3 1628
5 TraesCS2D01G594600 chr3D 478120930 478122582 1652 False 2571 2571 94.979 552 2180 1 chr3D.!!$F1 1628
6 TraesCS2D01G594600 chr3D 536127468 536128036 568 False 941 941 96.491 1 569 1 chr3D.!!$F2 568
7 TraesCS2D01G594600 chr5D 238122702 238124355 1653 False 2571 2571 94.982 552 2180 1 chr5D.!!$F1 1628
8 TraesCS2D01G594600 chr2B 663027412 663029064 1652 True 2516 2516 94.374 552 2181 1 chr2B.!!$R1 1629
9 TraesCS2D01G594600 chr7D 116648741 116650386 1645 False 2510 2510 94.374 552 2181 1 chr7D.!!$F1 1629
10 TraesCS2D01G594600 chr4D 130440762 130442401 1639 True 2497 2497 94.310 552 2180 1 chr4D.!!$R1 1628
11 TraesCS2D01G594600 chr4D 58448721 58449281 560 False 941 941 96.820 1 566 1 chr4D.!!$F1 565
12 TraesCS2D01G594600 chr5B 278890590 278892236 1646 False 2488 2488 94.132 552 2181 1 chr5B.!!$F1 1629
13 TraesCS2D01G594600 chr5B 404176135 404177628 1493 True 1738 1738 88.095 552 2020 1 chr5B.!!$R1 1468
14 TraesCS2D01G594600 chr1A 254401773 254403423 1650 False 2453 2453 93.705 552 2180 1 chr1A.!!$F1 1628
15 TraesCS2D01G594600 chr6B 74455741 74456412 671 True 946 946 92.285 552 1216 1 chr6B.!!$R4 664
16 TraesCS2D01G594600 chr6B 74348555 74349226 671 True 941 941 92.136 552 1216 1 chr6B.!!$R3 664
17 TraesCS2D01G594600 chr6B 74212910 74213581 671 True 918 918 91.543 552 1216 1 chr6B.!!$R2 664
18 TraesCS2D01G594600 chr6B 74062663 74063334 671 True 902 902 91.098 552 1216 1 chr6B.!!$R1 664
19 TraesCS2D01G594600 chr5A 570989534 570990098 564 True 933 933 96.473 1 566 1 chr5A.!!$R1 565
20 TraesCS2D01G594600 chr5A 272930344 272930931 587 False 891 891 93.939 1 592 1 chr5A.!!$F1 591
21 TraesCS2D01G594600 chr3B 811388349 811388897 548 False 931 931 97.268 3 551 1 chr3B.!!$F1 548
22 TraesCS2D01G594600 chr3B 811396984 811397532 548 False 931 931 97.268 3 551 1 chr3B.!!$F2 548
23 TraesCS2D01G594600 chr3B 447728613 447729171 558 True 922 922 96.435 1 560 1 chr3B.!!$R1 559
24 TraesCS2D01G594600 chr4A 559717547 559718128 581 True 924 924 95.361 1 580 1 chr4A.!!$R1 579
25 TraesCS2D01G594600 chr7A 146670536 146671103 567 False 917 917 95.782 1 569 1 chr7A.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 288 1.229368 TCCCATGTGTCCTCGGGAA 60.229 57.895 0.0 0.0 44.87 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 2258 0.040692 CATGCATGCACATCGGTAGC 60.041 55.0 25.37 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.932960 TGACAGAAGCTTAAACCCTAGTTTAC 59.067 38.462 0.00 0.00 45.78 2.01
286 288 1.229368 TCCCATGTGTCCTCGGGAA 60.229 57.895 0.00 0.00 44.87 3.97
642 644 2.957402 TGGGATGAGAACACTTGCTT 57.043 45.000 0.00 0.00 0.00 3.91
958 963 4.335647 CCCTGACAAGCCCGCTGT 62.336 66.667 0.00 0.00 0.00 4.40
1131 1156 1.077265 CATGACCCAGGGTGGCTTT 59.923 57.895 19.03 0.00 35.25 3.51
1213 1239 3.834013 TTCGTTGCCATGGCCGACA 62.834 57.895 33.44 20.70 41.09 4.35
1356 1388 4.609947 TGACGACGTACATTTTGTGTAGT 58.390 39.130 0.00 0.00 43.70 2.73
1380 1412 7.451566 AGTTAGGGCTCAAAAACTATTTGATGT 59.548 33.333 4.28 0.00 37.72 3.06
1381 1413 8.736244 GTTAGGGCTCAAAAACTATTTGATGTA 58.264 33.333 4.28 0.00 37.72 2.29
1401 1434 8.271458 TGATGTATGTATATTTTGGTGAGGTGT 58.729 33.333 0.00 0.00 0.00 4.16
1437 1470 0.534877 ACGCTGATGGTGAACTTGCA 60.535 50.000 0.00 0.00 0.00 4.08
1600 1637 3.638160 ACTTGTGTGCTCCATTGATTTGT 59.362 39.130 0.00 0.00 0.00 2.83
1671 1709 0.689745 CATCGGTAAGGTCCCAGGGA 60.690 60.000 3.01 3.01 0.00 4.20
1675 1713 1.408266 CGGTAAGGTCCCAGGGATTTG 60.408 57.143 12.84 0.00 32.73 2.32
1755 1799 1.271379 GGTTCAAGACTAGGCAGGCAA 60.271 52.381 0.00 0.00 28.86 4.52
1782 1826 0.542232 AGCTTACTCCGAGTGGGTGT 60.542 55.000 11.52 4.26 44.45 4.16
1848 1911 0.323629 GGTGGATCGTCAGTTTGGGA 59.676 55.000 0.00 0.00 0.00 4.37
1963 2036 4.287585 AGGGTACAAGGTAAGCACAACATA 59.712 41.667 0.00 0.00 0.00 2.29
1966 2039 6.996282 GGGTACAAGGTAAGCACAACATATAT 59.004 38.462 0.00 0.00 0.00 0.86
2122 2196 1.408702 GCCTGTTTTTGCTCAACCAGA 59.591 47.619 0.00 0.00 0.00 3.86
2181 2257 3.284449 GCAACCGAACACGCCCTT 61.284 61.111 0.00 0.00 0.00 3.95
2182 2258 2.637025 CAACCGAACACGCCCTTG 59.363 61.111 0.00 0.00 0.00 3.61
2183 2259 3.284449 AACCGAACACGCCCTTGC 61.284 61.111 0.00 0.00 0.00 4.01
2184 2260 3.767630 AACCGAACACGCCCTTGCT 62.768 57.895 0.00 0.00 34.43 3.91
2185 2261 2.047655 CCGAACACGCCCTTGCTA 60.048 61.111 0.00 0.00 34.43 3.49
2186 2262 2.388232 CCGAACACGCCCTTGCTAC 61.388 63.158 0.00 0.00 34.43 3.58
2187 2263 2.388232 CGAACACGCCCTTGCTACC 61.388 63.158 0.00 0.00 34.43 3.18
2188 2264 2.358247 AACACGCCCTTGCTACCG 60.358 61.111 0.00 0.00 34.43 4.02
2189 2265 2.775032 GAACACGCCCTTGCTACCGA 62.775 60.000 0.00 0.00 34.43 4.69
2190 2266 2.180159 AACACGCCCTTGCTACCGAT 62.180 55.000 0.00 0.00 34.43 4.18
2191 2267 2.173669 CACGCCCTTGCTACCGATG 61.174 63.158 0.00 0.00 34.43 3.84
2192 2268 2.186903 CGCCCTTGCTACCGATGT 59.813 61.111 0.00 0.00 34.43 3.06
2193 2269 2.173669 CGCCCTTGCTACCGATGTG 61.174 63.158 0.00 0.00 34.43 3.21
2194 2270 2.472909 GCCCTTGCTACCGATGTGC 61.473 63.158 0.00 0.00 33.53 4.57
2195 2271 1.078497 CCCTTGCTACCGATGTGCA 60.078 57.895 0.00 0.00 34.69 4.57
2196 2272 0.464373 CCCTTGCTACCGATGTGCAT 60.464 55.000 0.00 0.00 36.55 3.96
2197 2273 0.659427 CCTTGCTACCGATGTGCATG 59.341 55.000 0.00 0.00 36.55 4.06
2198 2274 0.028505 CTTGCTACCGATGTGCATGC 59.971 55.000 11.82 11.82 36.55 4.06
2199 2275 0.676151 TTGCTACCGATGTGCATGCA 60.676 50.000 18.46 18.46 36.55 3.96
2200 2276 0.464193 TGCTACCGATGTGCATGCAT 60.464 50.000 25.64 8.94 0.00 3.96
2201 2277 0.040692 GCTACCGATGTGCATGCATG 60.041 55.000 25.64 22.70 0.00 4.06
2218 2294 7.534085 CATGCATGCAATTTATCTTCAAACT 57.466 32.000 26.68 0.00 0.00 2.66
2219 2295 6.954616 TGCATGCAATTTATCTTCAAACTG 57.045 33.333 20.30 0.00 0.00 3.16
2220 2296 5.870433 TGCATGCAATTTATCTTCAAACTGG 59.130 36.000 20.30 0.00 0.00 4.00
2221 2297 6.101332 GCATGCAATTTATCTTCAAACTGGA 58.899 36.000 14.21 0.00 0.00 3.86
2222 2298 6.035327 GCATGCAATTTATCTTCAAACTGGAC 59.965 38.462 14.21 0.00 0.00 4.02
2223 2299 6.024552 TGCAATTTATCTTCAAACTGGACC 57.975 37.500 0.00 0.00 0.00 4.46
2224 2300 5.774690 TGCAATTTATCTTCAAACTGGACCT 59.225 36.000 0.00 0.00 0.00 3.85
2225 2301 6.071952 TGCAATTTATCTTCAAACTGGACCTC 60.072 38.462 0.00 0.00 0.00 3.85
2226 2302 6.546395 CAATTTATCTTCAAACTGGACCTCG 58.454 40.000 0.00 0.00 0.00 4.63
2227 2303 2.100605 ATCTTCAAACTGGACCTCGC 57.899 50.000 0.00 0.00 0.00 5.03
2228 2304 1.048601 TCTTCAAACTGGACCTCGCT 58.951 50.000 0.00 0.00 0.00 4.93
2229 2305 2.244695 TCTTCAAACTGGACCTCGCTA 58.755 47.619 0.00 0.00 0.00 4.26
2230 2306 2.631062 TCTTCAAACTGGACCTCGCTAA 59.369 45.455 0.00 0.00 0.00 3.09
2231 2307 3.070446 TCTTCAAACTGGACCTCGCTAAA 59.930 43.478 0.00 0.00 0.00 1.85
2232 2308 3.478857 TCAAACTGGACCTCGCTAAAA 57.521 42.857 0.00 0.00 0.00 1.52
2233 2309 3.135994 TCAAACTGGACCTCGCTAAAAC 58.864 45.455 0.00 0.00 0.00 2.43
2234 2310 3.139077 CAAACTGGACCTCGCTAAAACT 58.861 45.455 0.00 0.00 0.00 2.66
2235 2311 4.039488 TCAAACTGGACCTCGCTAAAACTA 59.961 41.667 0.00 0.00 0.00 2.24
2236 2312 4.820894 AACTGGACCTCGCTAAAACTAT 57.179 40.909 0.00 0.00 0.00 2.12
2237 2313 4.820894 ACTGGACCTCGCTAAAACTATT 57.179 40.909 0.00 0.00 0.00 1.73
2238 2314 4.756502 ACTGGACCTCGCTAAAACTATTC 58.243 43.478 0.00 0.00 0.00 1.75
2239 2315 4.222145 ACTGGACCTCGCTAAAACTATTCA 59.778 41.667 0.00 0.00 0.00 2.57
2240 2316 5.155278 TGGACCTCGCTAAAACTATTCAA 57.845 39.130 0.00 0.00 0.00 2.69
2241 2317 5.553123 TGGACCTCGCTAAAACTATTCAAA 58.447 37.500 0.00 0.00 0.00 2.69
2242 2318 5.410439 TGGACCTCGCTAAAACTATTCAAAC 59.590 40.000 0.00 0.00 0.00 2.93
2243 2319 5.410439 GGACCTCGCTAAAACTATTCAAACA 59.590 40.000 0.00 0.00 0.00 2.83
2244 2320 6.072893 GGACCTCGCTAAAACTATTCAAACAA 60.073 38.462 0.00 0.00 0.00 2.83
2245 2321 7.361799 GGACCTCGCTAAAACTATTCAAACAAT 60.362 37.037 0.00 0.00 0.00 2.71
2246 2322 7.882179 ACCTCGCTAAAACTATTCAAACAATT 58.118 30.769 0.00 0.00 0.00 2.32
2247 2323 7.807907 ACCTCGCTAAAACTATTCAAACAATTG 59.192 33.333 3.24 3.24 37.92 2.32
2248 2324 7.273381 CCTCGCTAAAACTATTCAAACAATTGG 59.727 37.037 10.83 0.00 37.15 3.16
2249 2325 6.584563 TCGCTAAAACTATTCAAACAATTGGC 59.415 34.615 10.83 0.00 37.15 4.52
2250 2326 6.452350 CGCTAAAACTATTCAAACAATTGGCG 60.452 38.462 10.83 5.38 37.15 5.69
2251 2327 6.364976 GCTAAAACTATTCAAACAATTGGCGT 59.635 34.615 10.83 0.00 37.15 5.68
2252 2328 6.523676 AAAACTATTCAAACAATTGGCGTG 57.476 33.333 10.83 4.76 37.15 5.34
2253 2329 4.173036 ACTATTCAAACAATTGGCGTGG 57.827 40.909 10.83 0.00 37.15 4.94
2254 2330 3.572255 ACTATTCAAACAATTGGCGTGGT 59.428 39.130 10.83 1.07 37.15 4.16
2255 2331 2.500509 TTCAAACAATTGGCGTGGTC 57.499 45.000 10.83 0.00 37.15 4.02
2256 2332 1.393603 TCAAACAATTGGCGTGGTCA 58.606 45.000 10.83 0.00 37.15 4.02
2257 2333 1.751351 TCAAACAATTGGCGTGGTCAA 59.249 42.857 10.83 0.00 37.15 3.18
2258 2334 2.166459 TCAAACAATTGGCGTGGTCAAA 59.834 40.909 10.83 0.00 37.15 2.69
2259 2335 2.507339 AACAATTGGCGTGGTCAAAG 57.493 45.000 10.83 0.00 28.60 2.77
2260 2336 1.686355 ACAATTGGCGTGGTCAAAGA 58.314 45.000 10.83 0.00 28.60 2.52
2261 2337 2.238521 ACAATTGGCGTGGTCAAAGAT 58.761 42.857 10.83 0.00 28.60 2.40
2262 2338 2.030007 ACAATTGGCGTGGTCAAAGATG 60.030 45.455 10.83 0.00 28.60 2.90
2263 2339 0.527565 ATTGGCGTGGTCAAAGATGC 59.472 50.000 0.00 0.00 28.60 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.736682 CCCCTTACGAAGCAACGCG 61.737 63.158 3.53 3.53 36.70 6.01
430 432 3.258971 AGGTATTCTCTGCAAGCACTC 57.741 47.619 0.00 0.00 0.00 3.51
642 644 1.759445 GCTCTGCCTCCAGAACTATGA 59.241 52.381 0.00 0.00 46.84 2.15
958 963 1.152830 GGGGTGTTGAAGGGCTTCA 59.847 57.895 0.00 0.00 46.72 3.02
974 979 0.033011 TCCTCTCTTCCTCTTCCGGG 60.033 60.000 0.00 0.00 0.00 5.73
1131 1156 1.448119 CCATGAGAGCCTCGTCGCTA 61.448 60.000 0.00 0.00 39.87 4.26
1356 1388 7.775053 ACATCAAATAGTTTTTGAGCCCTAA 57.225 32.000 13.15 0.00 41.13 2.69
1401 1434 7.772166 CATCAGCGTGAGGGATTAGTATATAA 58.228 38.462 0.00 0.00 0.00 0.98
1437 1470 0.611340 GAGGGTGTCGTCCTACCACT 60.611 60.000 0.00 0.00 38.74 4.00
1600 1637 3.065786 CACAAGAGCAAGAGTTGAAGCAA 59.934 43.478 0.00 0.00 0.00 3.91
1671 1709 4.706962 GGCTTCTTCCCATGAACTACAAAT 59.293 41.667 0.00 0.00 0.00 2.32
1675 1713 3.274288 CTGGCTTCTTCCCATGAACTAC 58.726 50.000 0.00 0.00 0.00 2.73
1755 1799 2.628657 ACTCGGAGTAAGCTTGTTCTGT 59.371 45.455 9.33 5.02 0.00 3.41
1782 1826 2.203195 AGTGCTGCCGTGCTTTCA 60.203 55.556 0.00 0.00 0.00 2.69
1848 1911 6.002704 AGATGTTGAAGTTCTTCAGCTTCAT 58.997 36.000 28.09 22.05 46.82 2.57
1867 1930 1.942657 CGATGAATTGGGCGAAGATGT 59.057 47.619 0.00 0.00 0.00 3.06
2063 2136 1.485895 AGTTGTTTGGTTGCCTGCATT 59.514 42.857 0.00 0.00 0.00 3.56
2122 2196 3.067106 CGCATACACTTCTCAAACCAGT 58.933 45.455 0.00 0.00 0.00 4.00
2181 2257 0.464193 ATGCATGCACATCGGTAGCA 60.464 50.000 25.37 0.00 43.14 3.49
2182 2258 0.040692 CATGCATGCACATCGGTAGC 60.041 55.000 25.37 0.00 0.00 3.58
2194 2270 7.398746 CAGTTTGAAGATAAATTGCATGCATG 58.601 34.615 23.37 22.70 0.00 4.06
2195 2271 6.537301 CCAGTTTGAAGATAAATTGCATGCAT 59.463 34.615 23.37 9.62 0.00 3.96
2196 2272 5.870433 CCAGTTTGAAGATAAATTGCATGCA 59.130 36.000 18.46 18.46 0.00 3.96
2197 2273 6.035327 GTCCAGTTTGAAGATAAATTGCATGC 59.965 38.462 11.82 11.82 0.00 4.06
2198 2274 6.532657 GGTCCAGTTTGAAGATAAATTGCATG 59.467 38.462 0.00 0.00 0.00 4.06
2199 2275 6.438425 AGGTCCAGTTTGAAGATAAATTGCAT 59.562 34.615 0.00 0.00 0.00 3.96
2200 2276 5.774690 AGGTCCAGTTTGAAGATAAATTGCA 59.225 36.000 0.00 0.00 0.00 4.08
2201 2277 6.272822 AGGTCCAGTTTGAAGATAAATTGC 57.727 37.500 0.00 0.00 0.00 3.56
2202 2278 6.546395 CGAGGTCCAGTTTGAAGATAAATTG 58.454 40.000 0.00 0.00 0.00 2.32
2203 2279 5.123979 GCGAGGTCCAGTTTGAAGATAAATT 59.876 40.000 0.00 0.00 0.00 1.82
2204 2280 4.636206 GCGAGGTCCAGTTTGAAGATAAAT 59.364 41.667 0.00 0.00 0.00 1.40
2205 2281 4.000988 GCGAGGTCCAGTTTGAAGATAAA 58.999 43.478 0.00 0.00 0.00 1.40
2206 2282 3.260884 AGCGAGGTCCAGTTTGAAGATAA 59.739 43.478 0.00 0.00 0.00 1.75
2207 2283 2.832129 AGCGAGGTCCAGTTTGAAGATA 59.168 45.455 0.00 0.00 0.00 1.98
2208 2284 1.625818 AGCGAGGTCCAGTTTGAAGAT 59.374 47.619 0.00 0.00 0.00 2.40
2209 2285 1.048601 AGCGAGGTCCAGTTTGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
2210 2286 2.743636 TAGCGAGGTCCAGTTTGAAG 57.256 50.000 0.00 0.00 0.00 3.02
2211 2287 3.478857 TTTAGCGAGGTCCAGTTTGAA 57.521 42.857 0.00 0.00 0.00 2.69
2212 2288 3.135994 GTTTTAGCGAGGTCCAGTTTGA 58.864 45.455 0.00 0.00 0.00 2.69
2213 2289 3.139077 AGTTTTAGCGAGGTCCAGTTTG 58.861 45.455 0.00 0.00 0.00 2.93
2214 2290 3.487120 AGTTTTAGCGAGGTCCAGTTT 57.513 42.857 0.00 0.00 0.00 2.66
2215 2291 4.820894 ATAGTTTTAGCGAGGTCCAGTT 57.179 40.909 0.00 0.00 0.00 3.16
2216 2292 4.222145 TGAATAGTTTTAGCGAGGTCCAGT 59.778 41.667 0.00 0.00 0.00 4.00
2217 2293 4.755411 TGAATAGTTTTAGCGAGGTCCAG 58.245 43.478 0.00 0.00 0.00 3.86
2218 2294 4.811969 TGAATAGTTTTAGCGAGGTCCA 57.188 40.909 0.00 0.00 0.00 4.02
2219 2295 5.410439 TGTTTGAATAGTTTTAGCGAGGTCC 59.590 40.000 0.00 0.00 0.00 4.46
2220 2296 6.476243 TGTTTGAATAGTTTTAGCGAGGTC 57.524 37.500 0.00 0.00 0.00 3.85
2221 2297 6.870971 TTGTTTGAATAGTTTTAGCGAGGT 57.129 33.333 0.00 0.00 0.00 3.85
2222 2298 7.273381 CCAATTGTTTGAATAGTTTTAGCGAGG 59.727 37.037 4.43 0.00 34.60 4.63
2223 2299 7.201350 GCCAATTGTTTGAATAGTTTTAGCGAG 60.201 37.037 4.43 0.00 34.60 5.03
2224 2300 6.584563 GCCAATTGTTTGAATAGTTTTAGCGA 59.415 34.615 4.43 0.00 34.60 4.93
2225 2301 6.452350 CGCCAATTGTTTGAATAGTTTTAGCG 60.452 38.462 4.43 2.68 34.60 4.26
2226 2302 6.364976 ACGCCAATTGTTTGAATAGTTTTAGC 59.635 34.615 4.43 0.00 34.60 3.09
2227 2303 7.148820 CCACGCCAATTGTTTGAATAGTTTTAG 60.149 37.037 4.43 0.00 34.60 1.85
2228 2304 6.642950 CCACGCCAATTGTTTGAATAGTTTTA 59.357 34.615 4.43 0.00 34.60 1.52
2229 2305 5.465056 CCACGCCAATTGTTTGAATAGTTTT 59.535 36.000 4.43 0.00 34.60 2.43
2230 2306 4.987912 CCACGCCAATTGTTTGAATAGTTT 59.012 37.500 4.43 0.00 34.60 2.66
2231 2307 4.038642 ACCACGCCAATTGTTTGAATAGTT 59.961 37.500 4.43 0.00 34.60 2.24
2232 2308 3.572255 ACCACGCCAATTGTTTGAATAGT 59.428 39.130 4.43 0.00 34.60 2.12
2233 2309 4.165779 GACCACGCCAATTGTTTGAATAG 58.834 43.478 4.43 0.00 34.60 1.73
2234 2310 3.570125 TGACCACGCCAATTGTTTGAATA 59.430 39.130 4.43 0.00 34.60 1.75
2235 2311 2.363680 TGACCACGCCAATTGTTTGAAT 59.636 40.909 4.43 0.00 34.60 2.57
2236 2312 1.751351 TGACCACGCCAATTGTTTGAA 59.249 42.857 4.43 0.00 34.60 2.69
2237 2313 1.393603 TGACCACGCCAATTGTTTGA 58.606 45.000 4.43 0.00 34.60 2.69
2238 2314 2.215907 TTGACCACGCCAATTGTTTG 57.784 45.000 4.43 0.00 0.00 2.93
2239 2315 2.428890 TCTTTGACCACGCCAATTGTTT 59.571 40.909 4.43 0.00 0.00 2.83
2240 2316 2.028130 TCTTTGACCACGCCAATTGTT 58.972 42.857 4.43 0.00 0.00 2.83
2241 2317 1.686355 TCTTTGACCACGCCAATTGT 58.314 45.000 4.43 0.00 0.00 2.71
2242 2318 2.598589 CATCTTTGACCACGCCAATTG 58.401 47.619 0.00 0.00 0.00 2.32
2243 2319 1.067635 GCATCTTTGACCACGCCAATT 60.068 47.619 0.00 0.00 0.00 2.32
2244 2320 0.527565 GCATCTTTGACCACGCCAAT 59.472 50.000 0.00 0.00 0.00 3.16
2245 2321 1.956043 GCATCTTTGACCACGCCAA 59.044 52.632 0.00 0.00 0.00 4.52
2246 2322 3.667087 GCATCTTTGACCACGCCA 58.333 55.556 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.