AutoCloner

Multiple sequence alignment - TraesCS2D01G593700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G593700	chr2D	100.000	4913	0	0	1	4913	648116266	648111354	0.000000e+00	9073
1	TraesCS2D01G593700	chr2D	88.520	2256	212	19	873	3100	648126661	648124425	0.000000e+00	2687
2	TraesCS2D01G593700	chr2D	86.256	1477	172	13	836	2283	648352246	648353720	0.000000e+00	1574
3	TraesCS2D01G593700	chr2D	83.254	1469	175	33	2282	3728	648353755	648355174	0.000000e+00	1284
4	TraesCS2D01G593700	chr2D	81.550	542	81	10	3154	3687	648124269	648123739	3.510000e-116	429
5	TraesCS2D01G593700	chr2D	76.297	713	93	40	176	829	648127487	648126792	1.330000e-80	311
6	TraesCS2D01G593700	chr2D	87.600	250	19	5	3680	3920	648123698	648123452	3.740000e-71	279
7	TraesCS2D01G593700	chr2D	84.615	156	19	3	3772	3926	648355146	648355297	3.060000e-32	150
8	TraesCS2D01G593700	chrUn	94.747	4093	161	19	835	4913	31320669	31324721	0.000000e+00	6318
9	TraesCS2D01G593700	chrUn	89.560	2002	183	10	1115	3100	31306611	31308602	0.000000e+00	2516
10	TraesCS2D01G593700	chrUn	86.015	1473	174	17	836	2283	31091744	31090279	0.000000e+00	1550
11	TraesCS2D01G593700	chrUn	83.016	1472	176	34	2282	3728	31090244	31088822	0.000000e+00	1266
12	TraesCS2D01G593700	chrUn	81.259	683	44	32	3654	4314	31309294	31309914	4.450000e-130	475
13	TraesCS2D01G593700	chrUn	82.018	545	79	10	3153	3689	31308757	31309290	3.490000e-121	446
14	TraesCS2D01G593700	chrUn	86.631	374	34	11	165	523	31319668	31320040	2.760000e-107	399
15	TraesCS2D01G593700	chrUn	78.357	633	78	27	168	749	31305265	31305889	6.050000e-94	355
16	TraesCS2D01G593700	chrUn	91.321	265	12	5	878	1131	31306318	31306582	7.820000e-93	351
17	TraesCS2D01G593700	chrUn	85.714	322	24	8	518	829	31320253	31320562	2.210000e-83	320
18	TraesCS2D01G593700	chrUn	83.439	157	21	3	3772	3927	31088850	31088698	1.840000e-29	141
19	TraesCS2D01G593700	chr2B	93.761	3927	151	47	846	4745	781801099	781804958	0.000000e+00	5808
20	TraesCS2D01G593700	chr2B	88.652	2256	215	18	871	3099	781790134	781792375	0.000000e+00	2710
21	TraesCS2D01G593700	chr2B	86.477	1479	165	17	836	2283	784273510	784274984	0.000000e+00	1591
22	TraesCS2D01G593700	chr2B	82.915	1475	175	36	2282	3728	784275019	784276444	0.000000e+00	1256
23	TraesCS2D01G593700	chr2B	84.669	574	32	16	1	523	781800464	781801032	5.640000e-144	521
24	TraesCS2D01G593700	chr2B	88.811	286	12	9	3654	3920	781793128	781793412	2.830000e-87	333
25	TraesCS2D01G593700	chr2B	83.974	156	20	3	3772	3926	784276416	784276567	1.430000e-30	145

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G593700	chr2D	648111354	648116266	4912	True	9073.000000	9073	100.000000	1	4913	1	chr2D.!!$R1	4912
1	TraesCS2D01G593700	chr2D	648352246	648355297	3051	False	1002.666667	1574	84.708333	836	3926	3	chr2D.!!$F1	3090
2	TraesCS2D01G593700	chr2D	648123452	648127487	4035	True	926.500000	2687	83.491750	176	3920	4	chr2D.!!$R2	3744
3	TraesCS2D01G593700	chrUn	31319668	31324721	5053	False	2345.666667	6318	89.030667	165	4913	3	chrUn.!!$F2	4748
4	TraesCS2D01G593700	chrUn	31088698	31091744	3046	True	985.666667	1550	84.156667	836	3927	3	chrUn.!!$R1	3091
5	TraesCS2D01G593700	chrUn	31305265	31309914	4649	False	828.600000	2516	84.503000	168	4314	5	chrUn.!!$F1	4146
6	TraesCS2D01G593700	chr2B	781800464	781804958	4494	False	3164.500000	5808	89.215000	1	4745	2	chr2B.!!$F2	4744
7	TraesCS2D01G593700	chr2B	781790134	781793412	3278	False	1521.500000	2710	88.731500	871	3920	2	chr2B.!!$F1	3049
8	TraesCS2D01G593700	chr2B	784273510	784276567	3057	False	997.333333	1591	84.455333	836	3926	3	chr2B.!!$F3	3090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
648	973	0.032403	GCACAATGCAGCTCCACAAA	59.968	50.000	0.00	0.00	44.26	2.83	F
765	1108	0.033504	TTGCGGGAGTGTCACTTCTC	59.966	55.000	11.18	4.49	0.00	2.87	F
1159	1896	0.257328	TGTGGGTGAGCCAGAAACAA	59.743	50.000	2.34	0.00	36.17	2.83	F
1166	1903	1.067516	TGAGCCAGAAACAAAAGCTGC	59.932	47.619	0.00	0.00	32.97	5.25	F
2005	2772	1.199327	CCATGCAAGCTGTGTCAGAAG	59.801	52.381	0.00	0.00	32.44	2.85	F
2923	3753	0.107081	CCCACCAACAGTAACCGACA	59.893	55.000	0.00	0.00	0.00	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1690	2445	0.823769	AGCGTGACACTGTCCTGAGA	60.824	55.000	6.72	0.0	0.00	3.27	R
2719	3546	1.293179	CCGTGGTCACTGATGCTGA	59.707	57.895	0.00	0.0	0.00	4.26	R
2853	3683	0.106268	TTTCTCTTGTGGGCTTGCCA	60.106	50.000	14.04	0.0	0.00	4.92	R
2898	3728	0.774276	TTACTGTTGGTGGGATGCCA	59.226	50.000	0.00	0.0	0.00	4.92	R
3113	3943	0.999406	CGGTGCTGTTAGACAATCCG	59.001	55.000	0.00	0.0	32.71	4.18	R
4811	5887	0.320421	GCCAATGCATGCATCCATCC	60.320	55.000	32.25	15.5	35.31	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	0.800012	TTAGCGCGGACCAAAATCAC	59.200	50.000	8.83	0.00	0.00	3.06
47	48	2.166829	CGGACCAAAATCACCCATCAA	58.833	47.619	0.00	0.00	0.00	2.57
54	55	6.015918	ACCAAAATCACCCATCAACTGAATA	58.984	36.000	0.00	0.00	0.00	1.75
55	56	6.496565	ACCAAAATCACCCATCAACTGAATAA	59.503	34.615	0.00	0.00	0.00	1.40
56	57	7.180766	ACCAAAATCACCCATCAACTGAATAAT	59.819	33.333	0.00	0.00	0.00	1.28
57	58	8.694540	CCAAAATCACCCATCAACTGAATAATA	58.305	33.333	0.00	0.00	0.00	0.98
90	91	5.838531	AGTGCAGATGTAGTAAGTAGGAC	57.161	43.478	0.00	0.00	0.00	3.85
109	112	4.947147	GTTGCCACGGGTGCTGGA	62.947	66.667	0.00	0.00	0.00	3.86
117	120	0.039618	ACGGGTGCTGGAATGGATTT	59.960	50.000	0.00	0.00	0.00	2.17
123	126	2.231235	GTGCTGGAATGGATTTTTCCGT	59.769	45.455	0.00	0.00	44.67	4.69
127	130	1.404035	GGAATGGATTTTTCCGTCCGG	59.596	52.381	0.00	0.00	37.32	5.14
144	150	0.457035	CGGCCATGGATTGTTCTTGG	59.543	55.000	18.40	0.00	0.00	3.61
195	225	2.117051	AGGATGCAGCTCTTGATCTGA	58.883	47.619	0.22	0.00	32.26	3.27
196	226	2.158928	AGGATGCAGCTCTTGATCTGAC	60.159	50.000	0.22	0.00	32.26	3.51
333	381	7.513969	CGAATAACGCTGTTCGATTTATGTGTA	60.514	37.037	11.65	0.00	45.87	2.90
432	506	1.264557	TCATGTTTTGCGGGTTACACG	59.735	47.619	1.26	1.26	0.00	4.49
528	851	3.493873	CGGCCAAGGGATTACTTACTACC	60.494	52.174	2.24	0.00	0.00	3.18
571	895	1.887707	GCTCGGATGCGGGTTAAGG	60.888	63.158	8.73	0.00	0.00	2.69
629	953	7.148722	GCTTGAGTGTAGAAAACTAGCAAGTAG	60.149	40.741	0.00	0.00	33.75	2.57
630	954	6.157211	TGAGTGTAGAAAACTAGCAAGTAGC	58.843	40.000	0.00	0.00	46.19	3.58
646	971	3.357919	GCACAATGCAGCTCCACA	58.642	55.556	0.00	0.00	44.26	4.17
647	972	1.661480	GCACAATGCAGCTCCACAA	59.339	52.632	0.00	0.00	44.26	3.33
648	973	0.032403	GCACAATGCAGCTCCACAAA	59.968	50.000	0.00	0.00	44.26	2.83
649	974	1.774639	CACAATGCAGCTCCACAAAC	58.225	50.000	0.00	0.00	0.00	2.93
711	1040	1.852157	GCATGGGAGGAAGTGGGTGA	61.852	60.000	0.00	0.00	0.00	4.02
732	1062	2.964209	TCCACACTTTCTGAGGTCTCT	58.036	47.619	0.00	0.00	32.56	3.10
743	1073	0.674269	GAGGTCTCTCGTGGAGTCGT	60.674	60.000	7.71	4.84	42.40	4.34
757	1094	3.542676	TCGTGGTTGCGGGAGTGT	61.543	61.111	0.00	0.00	0.00	3.55
763	1100	1.228657	GGTTGCGGGAGTGTCACTTC	61.229	60.000	7.00	4.56	0.00	3.01
765	1108	0.033504	TTGCGGGAGTGTCACTTCTC	59.966	55.000	11.18	4.49	0.00	2.87
768	1111	1.751924	GCGGGAGTGTCACTTCTCTAT	59.248	52.381	11.18	0.00	0.00	1.98
778	1121	4.343814	TGTCACTTCTCTATGTGTGTTCCA	59.656	41.667	0.00	0.00	35.82	3.53
781	1124	6.091441	GTCACTTCTCTATGTGTGTTCCATTC	59.909	42.308	0.00	0.00	35.82	2.67
791	1134	3.003689	GTGTGTTCCATTCAGTTCTGTGG	59.996	47.826	0.00	2.04	0.00	4.17
829	1174	2.325583	TGGTATGGGTCAAGCGATTC	57.674	50.000	0.00	0.00	0.00	2.52
831	1176	2.172505	TGGTATGGGTCAAGCGATTCAT	59.827	45.455	0.00	0.00	0.00	2.57
987	1658	7.913674	AATAATCTTGTCCTCTGAAACAGTC	57.086	36.000	0.00	0.00	32.61	3.51
1046	1726	2.827642	GCTGCAGGAGGATGGCAC	60.828	66.667	17.12	0.00	33.34	5.01
1061	1741	4.032356	CACGAGTGCTGTTGCTGA	57.968	55.556	0.00	0.00	40.48	4.26
1122	1814	5.515270	TGAACGTGAATTCTACGATGATGAC	59.485	40.000	26.23	10.87	43.82	3.06
1159	1896	0.257328	TGTGGGTGAGCCAGAAACAA	59.743	50.000	2.34	0.00	36.17	2.83
1166	1903	1.067516	TGAGCCAGAAACAAAAGCTGC	59.932	47.619	0.00	0.00	32.97	5.25
1411	2166	3.523972	GGAGGAATTTGGGAGGAAGTACT	59.476	47.826	0.00	0.00	0.00	2.73
1521	2276	3.865745	CGGTACCAGTGACTGATGAAATC	59.134	47.826	15.33	0.00	45.83	2.17
1634	2389	4.445557	AGTTGGAGAAAAGGAAAGCTCT	57.554	40.909	0.00	0.00	0.00	4.09
1690	2445	4.485163	GCAAGAACACACAGTTTCTTTGT	58.515	39.130	0.00	0.00	41.51	2.83
1843	2598	2.346803	CGGATGATCGTTTCACTGGTT	58.653	47.619	0.00	0.00	37.11	3.67
1950	2705	6.423182	TGATGGGAAAACATTAGAGGTTAGG	58.577	40.000	0.00	0.00	0.00	2.69
2005	2772	1.199327	CCATGCAAGCTGTGTCAGAAG	59.801	52.381	0.00	0.00	32.44	2.85
2218	2985	2.672908	CAGCTCAGGCCATCACCA	59.327	61.111	5.01	0.00	39.73	4.17
2719	3546	7.891183	AGTATAGCCTAGTGTACTATGCAGATT	59.109	37.037	17.53	4.03	40.88	2.40
2853	3683	4.511527	CTTTATCATCACAGTCAGCTGGT	58.488	43.478	15.13	0.27	46.62	4.00
2921	3751	1.002659	CATCCCACCAACAGTAACCGA	59.997	52.381	0.00	0.00	0.00	4.69
2923	3753	0.107081	CCCACCAACAGTAACCGACA	59.893	55.000	0.00	0.00	0.00	4.35
3045	3875	1.070309	GCTGCAATCGATCGAATGGAC	60.070	52.381	29.05	18.79	0.00	4.02
3213	4154	2.158519	TCTCCCGCTCTATATCACCACA	60.159	50.000	0.00	0.00	0.00	4.17
3981	5045	0.533755	CGCCCCCAGATGATGTTCTC	60.534	60.000	0.00	0.00	0.00	2.87
4135	5202	4.021981	AGCTGGCTGGTAAAATGAAGAAAC	60.022	41.667	0.00	0.00	0.00	2.78
4219	5288	4.713824	ATTTGTGATGCCAACTGATGAG	57.286	40.909	0.00	0.00	0.00	2.90
4354	5424	6.173339	TCAGTCAAGTTTCAGTTCAGTTCTT	58.827	36.000	0.00	0.00	0.00	2.52
4368	5438	7.062255	CAGTTCAGTTCTTTTCTGTTTTGGTTC	59.938	37.037	0.00	0.00	34.86	3.62
4412	5482	1.643868	TAAATTCACGCGCCTGCTGG	61.644	55.000	5.73	5.03	39.65	4.85
4418	5488	3.126879	CGCGCCTGCTGGATTTCA	61.127	61.111	14.77	0.00	39.65	2.69
4427	5497	3.070015	CCTGCTGGATTTCACTGGTTTTT	59.930	43.478	2.92	0.00	34.57	1.94
4451	5522	5.541845	TGTTGAGTCGAGATCTTTGAACAT	58.458	37.500	0.00	0.00	0.00	2.71
4518	5590	7.984050	TCATTTGTGCTTCTAATTTTTCAACCA	59.016	29.630	0.00	0.00	0.00	3.67
4663	5737	6.942886	TGAAAAATATAAGCGCAAAACTGG	57.057	33.333	11.47	0.00	0.00	4.00
4720	5796	3.084786	GTGAGCTATCCAGTTGCCTTTT	58.915	45.455	0.00	0.00	0.00	2.27
4784	5860	8.759481	TCATGAGTATTTTGTGCCCATAAATA	57.241	30.769	0.00	0.00	0.00	1.40
4785	5861	9.194972	TCATGAGTATTTTGTGCCCATAAATAA	57.805	29.630	0.00	0.00	0.00	1.40
4786	5862	9.814899	CATGAGTATTTTGTGCCCATAAATAAA	57.185	29.630	0.00	0.00	0.00	1.40
4789	5865	9.476202	GAGTATTTTGTGCCCATAAATAAATCC	57.524	33.333	0.00	0.00	0.00	3.01
4790	5866	8.986991	AGTATTTTGTGCCCATAAATAAATCCA	58.013	29.630	0.00	0.00	0.00	3.41
4791	5867	9.777297	GTATTTTGTGCCCATAAATAAATCCAT	57.223	29.630	0.00	0.00	0.00	3.41
4811	5887	9.657419	AATCCATAAATTTGTGGCTTCTAAAAG	57.343	29.630	24.87	2.44	39.09	2.27
4853	5929	3.258123	ACACCATGTGATAAGCCCAAAAC	59.742	43.478	0.49	0.00	36.96	2.43
4855	5931	2.159254	CCATGTGATAAGCCCAAAACGG	60.159	50.000	0.00	0.00	0.00	4.44
4891	5967	3.489355	AGAAGTGATTGATTGGCACACA	58.511	40.909	6.46	0.00	39.29	3.72

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
78	79	2.493278	GTGGCAACCGTCCTACTTACTA	59.507	50.000	0.00	0.00	0.00	1.82
109	112	0.815095	GCCGGACGGAAAAATCCATT	59.185	50.000	15.99	0.00	37.50	3.16
117	120	2.204865	AATCCATGGCCGGACGGAAA	62.205	55.000	15.99	1.27	38.07	3.13
123	126	0.331278	AAGAACAATCCATGGCCGGA	59.669	50.000	5.05	1.40	40.07	5.14
127	130	1.895131	ACACCAAGAACAATCCATGGC	59.105	47.619	6.96	0.00	36.82	4.40
163	169	0.393402	TGCATCCTGCTTGCTACCAG	60.393	55.000	0.34	0.00	45.31	4.00
333	381	2.028876	AGCCACAAAACTAAAAGGCGT	58.971	42.857	0.00	0.00	46.34	5.68
412	486	1.264557	CGTGTAACCCGCAAAACATGA	59.735	47.619	0.00	0.00	31.86	3.07
419	493	0.892755	AGATCTCGTGTAACCCGCAA	59.107	50.000	0.00	0.00	0.00	4.85
422	496	3.528594	CGAGATCTCGTGTAACCCG	57.471	57.895	32.23	8.50	46.99	5.28
432	506	3.399330	CCAGTAGAGACCTCGAGATCTC	58.601	54.545	26.87	26.87	41.50	2.75
571	895	0.744414	ACATGCATGGTGTCTACGCC	60.744	55.000	29.41	5.73	46.40	5.68
629	953	0.032403	TTTGTGGAGCTGCATTGTGC	59.968	50.000	12.38	0.00	45.29	4.57
630	954	1.067364	TGTTTGTGGAGCTGCATTGTG	59.933	47.619	12.38	0.00	0.00	3.33
646	971	4.808767	AACTAGTTCCCTTCCCTTGTTT	57.191	40.909	1.12	0.00	0.00	2.83
647	972	4.167307	TGAAACTAGTTCCCTTCCCTTGTT	59.833	41.667	8.95	0.00	35.12	2.83
648	973	3.720002	TGAAACTAGTTCCCTTCCCTTGT	59.280	43.478	8.95	0.00	35.12	3.16
649	974	4.327680	CTGAAACTAGTTCCCTTCCCTTG	58.672	47.826	8.95	0.00	35.12	3.61
711	1040	3.513515	GAGAGACCTCAGAAAGTGTGGAT	59.486	47.826	0.00	0.00	41.70	3.41
732	1062	2.028484	GCAACCACGACTCCACGA	59.972	61.111	0.00	0.00	37.03	4.35
743	1073	1.978455	AAGTGACACTCCCGCAACCA	61.978	55.000	8.93	0.00	0.00	3.67
778	1121	5.295292	CGATTTGATAGCCACAGAACTGAAT	59.705	40.000	8.87	0.00	0.00	2.57
781	1124	3.242543	GCGATTTGATAGCCACAGAACTG	60.243	47.826	0.00	0.00	0.00	3.16
791	1134	2.104144	CAAGTTGCGCGATTTGATAGC	58.896	47.619	24.36	0.00	0.00	2.97
972	1641	2.135933	CCAACGACTGTTTCAGAGGAC	58.864	52.381	3.70	0.00	35.72	3.85
987	1658	1.586028	CCCCATTCTTGCACCAACG	59.414	57.895	0.00	0.00	0.00	4.10
1046	1726	1.150827	TTCATCAGCAACAGCACTCG	58.849	50.000	0.00	0.00	0.00	4.18
1061	1741	8.515695	TTCTTCACTGCATTCTTCATATTCAT	57.484	30.769	0.00	0.00	0.00	2.57
1122	1814	2.035425	CACATTGTCGTCGTCATCATCG	60.035	50.000	0.00	0.00	0.00	3.84
1159	1896	0.036732	TCACAAGGATCCGCAGCTTT	59.963	50.000	5.98	0.00	0.00	3.51
1521	2276	3.536158	TTCTTGAACGGCTTCAATTCG	57.464	42.857	10.93	0.00	43.89	3.34
1634	2389	1.545428	GGCTGTCCTGGTCATCAAACA	60.545	52.381	0.00	0.00	0.00	2.83
1690	2445	0.823769	AGCGTGACACTGTCCTGAGA	60.824	55.000	6.72	0.00	0.00	3.27
1699	2454	2.205074	CACTTCTTTCAGCGTGACACT	58.795	47.619	3.68	0.00	0.00	3.55
2218	2985	5.221702	CCTCAACCAGAAACCCATTCAAATT	60.222	40.000	0.00	0.00	40.72	1.82
2719	3546	1.293179	CCGTGGTCACTGATGCTGA	59.707	57.895	0.00	0.00	0.00	4.26
2853	3683	0.106268	TTTCTCTTGTGGGCTTGCCA	60.106	50.000	14.04	0.00	0.00	4.92
2898	3728	0.774276	TTACTGTTGGTGGGATGCCA	59.226	50.000	0.00	0.00	0.00	4.92
2913	3743	3.660865	GACCAACTGATTGTCGGTTACT	58.339	45.455	4.02	0.00	43.61	2.24
2921	3751	2.550830	AAGCTCGACCAACTGATTGT	57.449	45.000	0.00	0.00	33.60	2.71
2923	3753	2.814336	GGAAAAGCTCGACCAACTGATT	59.186	45.455	0.00	0.00	0.00	2.57
3033	3863	1.202325	TGGTAACCGTCCATTCGATCG	60.202	52.381	9.36	9.36	0.00	3.69
3038	3868	2.353579	CCGATTTGGTAACCGTCCATTC	59.646	50.000	0.00	0.00	34.75	2.67
3045	3875	1.396996	CTTGCTCCGATTTGGTAACCG	59.603	52.381	0.00	0.00	39.52	4.44
3113	3943	0.999406	CGGTGCTGTTAGACAATCCG	59.001	55.000	0.00	0.00	32.71	4.18
3213	4154	1.859302	AGATCTCGGTCAGCCTTTCT	58.141	50.000	0.00	0.00	0.00	2.52
3981	5045	3.001414	CAAGAGATCCACTGAGCACAAG	58.999	50.000	0.00	0.00	0.00	3.16
4048	5115	7.605309	ACTAGTTAAGTACATGGCTAAACCAAC	59.395	37.037	0.00	0.00	45.01	3.77
4219	5288	5.472137	TCTTACTTAACTGGTGAAATGGTGC	59.528	40.000	0.00	0.00	0.00	5.01
4321	5391	9.736023	GAACTGAAACTTGACTGAACAAATAAT	57.264	29.630	0.00	0.00	0.00	1.28
4322	5392	8.735315	TGAACTGAAACTTGACTGAACAAATAA	58.265	29.630	0.00	0.00	0.00	1.40
4401	5471	3.126879	TGAAATCCAGCAGGCGCG	61.127	61.111	0.00	0.00	45.49	6.86
4427	5497	5.356426	TGTTCAAAGATCTCGACTCAACAA	58.644	37.500	0.00	0.00	0.00	2.83
4436	5507	6.854892	GGCATGATTTATGTTCAAAGATCTCG	59.145	38.462	0.00	0.00	39.08	4.04
4491	5563	8.825745	GGTTGAAAAATTAGAAGCACAAATGAA	58.174	29.630	0.00	0.00	0.00	2.57
4492	5564	7.984050	TGGTTGAAAAATTAGAAGCACAAATGA	59.016	29.630	0.00	0.00	0.00	2.57
4493	5565	8.140677	TGGTTGAAAAATTAGAAGCACAAATG	57.859	30.769	0.00	0.00	0.00	2.32
4518	5590	8.758829	ACCTGGAAGAAAAACTATTTGAAACTT	58.241	29.630	0.00	0.00	34.07	2.66
4663	5737	6.584563	CAGAGCTCTACTTCAACTACTTCAAC	59.415	42.308	17.75	0.00	0.00	3.18
4740	5816	8.143193	ACTCATGAGAAACAAAATGCAAACATA	58.857	29.630	29.27	0.00	34.62	2.29
4754	5830	5.048083	TGGGCACAAAATACTCATGAGAAAC	60.048	40.000	29.27	7.32	0.00	2.78
4786	5862	8.260114	CCTTTTAGAAGCCACAAATTTATGGAT	58.740	33.333	19.78	10.42	38.34	3.41
4787	5863	7.453126	TCCTTTTAGAAGCCACAAATTTATGGA	59.547	33.333	19.78	0.00	38.34	3.41
4788	5864	7.610865	TCCTTTTAGAAGCCACAAATTTATGG	58.389	34.615	11.32	11.32	39.16	2.74
4789	5865	9.090692	CATCCTTTTAGAAGCCACAAATTTATG	57.909	33.333	0.00	0.00	0.00	1.90
4790	5866	8.260114	CCATCCTTTTAGAAGCCACAAATTTAT	58.740	33.333	0.00	0.00	0.00	1.40
4791	5867	7.453126	TCCATCCTTTTAGAAGCCACAAATTTA	59.547	33.333	0.00	0.00	0.00	1.40
4792	5868	6.269769	TCCATCCTTTTAGAAGCCACAAATTT	59.730	34.615	0.00	0.00	0.00	1.82
4793	5869	5.779771	TCCATCCTTTTAGAAGCCACAAATT	59.220	36.000	0.00	0.00	0.00	1.82
4794	5870	5.332743	TCCATCCTTTTAGAAGCCACAAAT	58.667	37.500	0.00	0.00	0.00	2.32
4795	5871	4.735369	TCCATCCTTTTAGAAGCCACAAA	58.265	39.130	0.00	0.00	0.00	2.83
4811	5887	0.320421	GCCAATGCATGCATCCATCC	60.320	55.000	32.25	15.50	35.31	3.51
4847	5923	2.301577	TTGCCTTGTTTCCGTTTTGG	57.698	45.000	0.00	0.00	40.09	3.28
4875	5951	3.915536	CACATTGTGTGCCAATCAATCA	58.084	40.909	8.69	0.00	41.89	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.