AutoCloner

Multiple sequence alignment - TraesCS2D01G592900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G592900	chr2D	100.000	3219	0	0	1	3219	647816017	647812799	0.000000e+00	5945
1	TraesCS2D01G592900	chr2D	82.069	725	102	18	1345	2044	33875082	33874361	7.690000e-166	593
2	TraesCS2D01G592900	chr2D	89.164	323	35	0	1345	1667	33850159	33849837	1.390000e-108	403
3	TraesCS2D01G592900	chr2D	80.716	363	54	8	1689	2044	33855532	33855179	5.290000e-68	268
4	TraesCS2D01G592900	chr2D	84.524	168	23	3	2871	3038	621501082	621501246	2.570000e-36	163
5	TraesCS2D01G592900	chr2A	92.577	1711	66	31	709	2390	772662862	772664540	0.000000e+00	2399
6	TraesCS2D01G592900	chr2A	84.191	1923	158	93	789	2630	772656454	772658311	0.000000e+00	1733
7	TraesCS2D01G592900	chr2A	90.898	846	42	6	2391	3219	772664608	772665435	0.000000e+00	1103
8	TraesCS2D01G592900	chr2A	84.615	689	89	15	1	675	766976537	766975852	0.000000e+00	669
9	TraesCS2D01G592900	chr2A	82.483	725	98	11	1345	2044	36719020	36718300	2.750000e-170	608
10	TraesCS2D01G592900	chr2A	80.685	642	75	22	1740	2369	772655106	772655710	1.360000e-123	453
11	TraesCS2D01G592900	chr2A	90.855	339	29	2	2882	3219	772658748	772659085	1.360000e-123	453
12	TraesCS2D01G592900	chr2A	84.078	358	43	9	1693	2044	57976006	57976355	1.850000e-87	333
13	TraesCS2D01G592900	chr2A	80.441	363	54	10	1689	2043	36706286	36705933	8.860000e-66	261
14	TraesCS2D01G592900	chr2A	91.489	94	8	0	709	802	772655962	772656055	2.610000e-26	130
15	TraesCS2D01G592900	chr2B	88.077	1300	76	34	829	2085	788004097	788005360	0.000000e+00	1469
16	TraesCS2D01G592900	chr2B	83.699	730	86	18	1342	2044	55887907	55888630	0.000000e+00	658
17	TraesCS2D01G592900	chr2B	81.344	729	103	23	1342	2041	55896228	55896952	2.170000e-156	562
18	TraesCS2D01G592900	chr2B	85.768	534	54	11	2695	3219	788006812	788007332	2.180000e-151	545
19	TraesCS2D01G592900	chr2B	84.647	241	23	8	2153	2390	788005635	788005864	8.980000e-56	228
20	TraesCS2D01G592900	chr2B	89.216	102	10	1	727	828	787993147	787993247	3.370000e-25	126
21	TraesCS2D01G592900	chr7B	86.486	703	67	18	1	685	685213285	685213977	0.000000e+00	747
22	TraesCS2D01G592900	chr5B	85.818	691	77	16	1	675	600060106	600060791	0.000000e+00	713
23	TraesCS2D01G592900	chr4B	85.818	691	67	23	4	675	599686320	599686998	0.000000e+00	704
24	TraesCS2D01G592900	chr5A	84.638	690	84	17	1	675	608200278	608200960	0.000000e+00	667
25	TraesCS2D01G592900	chr5D	84.660	691	80	16	3	675	388084962	388085644	0.000000e+00	665
26	TraesCS2D01G592900	chr5D	87.097	155	20	0	2396	2550	542428691	542428845	3.300000e-40	176
27	TraesCS2D01G592900	chr6A	84.470	689	81	15	2	675	553060952	553060275	0.000000e+00	656
28	TraesCS2D01G592900	chr3D	86.567	603	63	16	3	589	54385167	54384567	0.000000e+00	649
29	TraesCS2D01G592900	chrUn	84.203	690	84	19	3	675	127003279	127003960	0.000000e+00	647
30	TraesCS2D01G592900	chrUn	89.408	321	34	0	1347	1667	12882672	12882352	3.870000e-109	405
31	TraesCS2D01G592900	chrUn	80.441	363	54	10	1689	2043	12891409	12891762	8.860000e-66	261
32	TraesCS2D01G592900	chr4A	86.076	158	22	0	2396	2553	626723049	626722892	1.540000e-38	171

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G592900	chr2D	647812799	647816017	3218	True	5945.000000	5945	100.000000	1	3219	1	chr2D.!!$R4	3218
1	TraesCS2D01G592900	chr2D	33874361	33875082	721	True	593.000000	593	82.069000	1345	2044	1	chr2D.!!$R3	699
2	TraesCS2D01G592900	chr2A	772655106	772665435	10329	False	1045.166667	2399	88.449167	709	3219	6	chr2A.!!$F2	2510
3	TraesCS2D01G592900	chr2A	766975852	766976537	685	True	669.000000	669	84.615000	1	675	1	chr2A.!!$R3	674
4	TraesCS2D01G592900	chr2A	36718300	36719020	720	True	608.000000	608	82.483000	1345	2044	1	chr2A.!!$R2	699
5	TraesCS2D01G592900	chr2B	788004097	788007332	3235	False	747.333333	1469	86.164000	829	3219	3	chr2B.!!$F4	2390
6	TraesCS2D01G592900	chr2B	55887907	55888630	723	False	658.000000	658	83.699000	1342	2044	1	chr2B.!!$F1	702
7	TraesCS2D01G592900	chr2B	55896228	55896952	724	False	562.000000	562	81.344000	1342	2041	1	chr2B.!!$F2	699
8	TraesCS2D01G592900	chr7B	685213285	685213977	692	False	747.000000	747	86.486000	1	685	1	chr7B.!!$F1	684
9	TraesCS2D01G592900	chr5B	600060106	600060791	685	False	713.000000	713	85.818000	1	675	1	chr5B.!!$F1	674
10	TraesCS2D01G592900	chr4B	599686320	599686998	678	False	704.000000	704	85.818000	4	675	1	chr4B.!!$F1	671
11	TraesCS2D01G592900	chr5A	608200278	608200960	682	False	667.000000	667	84.638000	1	675	1	chr5A.!!$F1	674
12	TraesCS2D01G592900	chr5D	388084962	388085644	682	False	665.000000	665	84.660000	3	675	1	chr5D.!!$F1	672
13	TraesCS2D01G592900	chr6A	553060275	553060952	677	True	656.000000	656	84.470000	2	675	1	chr6A.!!$R1	673
14	TraesCS2D01G592900	chr3D	54384567	54385167	600	True	649.000000	649	86.567000	3	589	1	chr3D.!!$R1	586
15	TraesCS2D01G592900	chrUn	127003279	127003960	681	False	647.000000	647	84.203000	3	675	1	chrUn.!!$F2	672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
959	8014	0.113776	TAATATCCCTCCGGTCCGCT	59.886	55.0	5.50	0.0	0.0	5.52	F
1298	8367	0.313987	AATGAGAGTGCACACGTCGA	59.686	50.0	21.04	0.9	36.2	4.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2085	9266	1.263217	GGCGCGACTAATTAACATGGG	59.737	52.381	12.1	0.0	0.0	4.00	R
2964	11007	0.821517	ATTGCGTGGGTCTCGTATGA	59.178	50.000	0.0	0.0	0.0	2.15	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	53	9.717942	TTAATTCACCATGTTTCCTAATTTTGG	57.282	29.630	0.00	0.00	0.00	3.28
112	114	2.289506	GGTCTACTATTTGATCGGGCCC	60.290	54.545	13.57	13.57	0.00	5.80
132	134	5.297527	GGCCCATGATTTTTCAAATCAATCC	59.702	40.000	14.28	9.83	39.75	3.01
176	178	2.885135	ATCAATCTTGTGCACCCTCA	57.115	45.000	15.69	0.00	0.00	3.86
457	478	4.818546	AGAGCCAAAAATATCGACATCCAG	59.181	41.667	0.00	0.00	0.00	3.86
612	637	9.603921	AATGCACCTTATATTTTGATGAAAAGG	57.396	29.630	0.00	0.00	34.53	3.11
614	639	7.180051	TGCACCTTATATTTTGATGAAAAGGGT	59.820	33.333	0.00	0.00	34.53	4.34
616	645	7.981225	CACCTTATATTTTGATGAAAAGGGTGG	59.019	37.037	14.71	8.38	34.53	4.61
617	646	7.125659	ACCTTATATTTTGATGAAAAGGGTGGG	59.874	37.037	0.00	0.00	34.53	4.61
677	709	1.270678	GCGTCCAACCCTTCTAGTGTT	60.271	52.381	0.00	0.00	0.00	3.32
678	710	2.028748	GCGTCCAACCCTTCTAGTGTTA	60.029	50.000	0.00	0.00	0.00	2.41
679	711	3.369157	GCGTCCAACCCTTCTAGTGTTAT	60.369	47.826	0.00	0.00	0.00	1.89
680	712	4.828829	CGTCCAACCCTTCTAGTGTTATT	58.171	43.478	0.00	0.00	0.00	1.40
683	715	6.415573	GTCCAACCCTTCTAGTGTTATTGAT	58.584	40.000	0.00	0.00	0.00	2.57
684	716	6.316390	GTCCAACCCTTCTAGTGTTATTGATG	59.684	42.308	0.00	0.00	0.00	3.07
685	717	6.012858	TCCAACCCTTCTAGTGTTATTGATGT	60.013	38.462	0.00	0.00	0.00	3.06
686	718	7.181305	TCCAACCCTTCTAGTGTTATTGATGTA	59.819	37.037	0.00	0.00	0.00	2.29
687	719	7.280205	CCAACCCTTCTAGTGTTATTGATGTAC	59.720	40.741	0.00	0.00	0.00	2.90
691	723	8.883731	CCCTTCTAGTGTTATTGATGTACAAAG	58.116	37.037	0.00	0.00	42.03	2.77
692	724	9.436957	CCTTCTAGTGTTATTGATGTACAAAGT	57.563	33.333	0.00	0.00	42.03	2.66
759	7811	8.734386	TGCTAGCCATACATATCGATATGATAG	58.266	37.037	39.14	28.47	42.69	2.08
882	7934	6.516693	GCTGAATTAAGGAATTTAATCCCGGG	60.517	42.308	16.85	16.85	40.29	5.73
959	8014	0.113776	TAATATCCCTCCGGTCCGCT	59.886	55.000	5.50	0.00	0.00	5.52
1037	8092	2.419297	GGGACACACATCACCTCATCTC	60.419	54.545	0.00	0.00	0.00	2.75
1043	8098	3.029570	CACATCACCTCATCTCTCTCCA	58.970	50.000	0.00	0.00	0.00	3.86
1044	8099	3.450096	CACATCACCTCATCTCTCTCCAA	59.550	47.826	0.00	0.00	0.00	3.53
1045	8100	4.101274	CACATCACCTCATCTCTCTCCAAT	59.899	45.833	0.00	0.00	0.00	3.16
1046	8101	4.344679	ACATCACCTCATCTCTCTCCAATC	59.655	45.833	0.00	0.00	0.00	2.67
1049	8111	3.647113	CACCTCATCTCTCTCCAATCCAT	59.353	47.826	0.00	0.00	0.00	3.41
1116	8185	2.567985	TCTTCTTCCTTCGCCGTTTTT	58.432	42.857	0.00	0.00	0.00	1.94
1161	8230	1.073199	CCTCCTTTCCCACAGCGTT	59.927	57.895	0.00	0.00	0.00	4.84
1279	8348	1.153920	ACGCATGCACACGTCGATA	60.154	52.632	19.57	0.00	38.28	2.92
1291	8360	2.531912	CACGTCGATAATGAGAGTGCAC	59.468	50.000	9.40	9.40	0.00	4.57
1292	8361	2.163613	ACGTCGATAATGAGAGTGCACA	59.836	45.455	21.04	0.00	0.00	4.57
1293	8362	2.531912	CGTCGATAATGAGAGTGCACAC	59.468	50.000	21.04	13.64	0.00	3.82
1294	8363	2.531912	GTCGATAATGAGAGTGCACACG	59.468	50.000	21.04	9.73	36.20	4.49
1295	8364	2.163613	TCGATAATGAGAGTGCACACGT	59.836	45.455	21.04	8.52	36.20	4.49
1296	8365	2.531912	CGATAATGAGAGTGCACACGTC	59.468	50.000	21.04	12.53	36.20	4.34
1298	8367	0.313987	AATGAGAGTGCACACGTCGA	59.686	50.000	21.04	0.90	36.20	4.20
1299	8368	0.528017	ATGAGAGTGCACACGTCGAT	59.472	50.000	21.04	3.27	36.20	3.59
1300	8369	1.161843	TGAGAGTGCACACGTCGATA	58.838	50.000	21.04	0.00	36.20	2.92
1678	8826	3.019003	TAAGCTCGAGCCCAGTGCC	62.019	63.158	32.94	3.92	43.38	5.01
1688	8863	4.680237	CCAGTGCCCGCTTCGTGA	62.680	66.667	0.00	0.00	0.00	4.35
1689	8864	2.434884	CAGTGCCCGCTTCGTGAT	60.435	61.111	0.00	0.00	0.00	3.06
1719	8894	3.873361	TCGATCCATTGTCATCTCTTTGC	59.127	43.478	0.00	0.00	0.00	3.68
2099	9280	7.287005	TCAGATCGAGTACCCATGTTAATTAGT	59.713	37.037	0.00	0.00	0.00	2.24
2102	9283	4.443394	CGAGTACCCATGTTAATTAGTCGC	59.557	45.833	0.00	0.00	31.09	5.19
2303	9693	8.498054	TCTTCCTAATTTCAAGACTAATGCTG	57.502	34.615	0.00	0.00	0.00	4.41
2533	10282	5.484715	AGATTTCATTTGATTTGCCACCAG	58.515	37.500	0.00	0.00	0.00	4.00
2659	10448	4.789012	ACTAACGACCGAACCAAGATAA	57.211	40.909	0.00	0.00	0.00	1.75
2720	10758	4.559862	ACTAGAGGTTCTGGGACAATTG	57.440	45.455	3.24	3.24	38.70	2.32
2773	10811	5.399991	TGAAGGGAGTCCAGTAGTAAAAGA	58.600	41.667	12.30	0.00	34.83	2.52
2909	10952	2.620115	ACAGCTTCCCATGCGATTAATG	59.380	45.455	0.00	0.00	35.28	1.90
2964	11007	3.251487	CGAGACCACCGTAAAACCAAAAT	59.749	43.478	0.00	0.00	0.00	1.82
3205	11268	1.243902	TTTTTCCGTGGTGGCTGATC	58.756	50.000	0.00	0.00	37.80	2.92
3207	11270	0.321564	TTTCCGTGGTGGCTGATCTG	60.322	55.000	0.00	0.00	37.80	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	9.196552	GAAAGAGTTCCAAAATTAGGAAACATG	57.803	33.333	12.43	0.00	46.03	3.21
94	95	3.007940	TCATGGGCCCGATCAAATAGTAG	59.992	47.826	19.37	0.00	0.00	2.57
112	114	6.650239	TGCGGATTGATTTGAAAAATCATG	57.350	33.333	14.35	7.80	36.63	3.07
132	134	4.814234	TGTTTCTATAGGCCTGTTATTGCG	59.186	41.667	17.99	0.00	0.00	4.85
200	202	7.726738	TGTACTATATTGGTGCTACAGATGGTA	59.273	37.037	0.00	0.00	0.00	3.25
334	348	4.962836	GGCGGGGCATGGAGATGG	62.963	72.222	0.00	0.00	0.00	3.51
342	362	0.470766	TATTTAGTTCGGCGGGGCAT	59.529	50.000	7.21	0.00	0.00	4.40
423	444	4.561735	TTTTTGGCTCTAAACTTGGTCG	57.438	40.909	0.00	0.00	0.00	4.79
589	614	7.492344	CACCCTTTTCATCAAAATATAAGGTGC	59.508	37.037	0.00	0.00	30.83	5.01
625	655	6.274157	ACGCCATTGATGTTATTGGTTAAA	57.726	33.333	0.00	0.00	0.00	1.52
626	656	5.906113	ACGCCATTGATGTTATTGGTTAA	57.094	34.783	0.00	0.00	0.00	2.01
627	657	5.008217	GCTACGCCATTGATGTTATTGGTTA	59.992	40.000	0.00	0.00	0.00	2.85
629	659	3.315191	GCTACGCCATTGATGTTATTGGT	59.685	43.478	0.00	0.00	0.00	3.67
630	660	3.314913	TGCTACGCCATTGATGTTATTGG	59.685	43.478	0.00	0.00	0.00	3.16
657	689	0.320697	ACACTAGAAGGGTTGGACGC	59.679	55.000	0.00	0.00	0.00	5.19
710	742	9.325198	AGCATCGTTCATAACTTTATACATCAA	57.675	29.630	0.00	0.00	0.00	2.57
711	743	8.887036	AGCATCGTTCATAACTTTATACATCA	57.113	30.769	0.00	0.00	0.00	3.07
718	7770	5.666462	TGGCTAGCATCGTTCATAACTTTA	58.334	37.500	18.24	0.00	0.00	1.85
730	7782	4.292977	TCGATATGTATGGCTAGCATCG	57.707	45.455	18.24	19.08	36.14	3.84
759	7811	1.669265	GGATGGAAATCGGACGGAAAC	59.331	52.381	0.00	0.00	0.00	2.78
815	7867	7.147143	TCTAGGTATTACGATCTCAGCAATC	57.853	40.000	0.00	0.00	0.00	2.67
819	7871	7.147143	TGATTCTAGGTATTACGATCTCAGC	57.853	40.000	0.00	0.00	0.00	4.26
882	7934	3.926616	TCCGTTTCTCAAGACTGATTCC	58.073	45.455	0.00	0.00	0.00	3.01
924	7978	9.507329	GAGGGATATTATTCTTGTTAATGAGCA	57.493	33.333	0.00	0.00	0.00	4.26
959	8014	7.584108	CACGCTCATTATATTCCTTGCAATTA	58.416	34.615	0.00	0.00	0.00	1.40
1037	8092	4.202346	GGAAGAGGAGAATGGATTGGAGAG	60.202	50.000	0.00	0.00	0.00	3.20
1043	8098	3.386402	GTCGAGGAAGAGGAGAATGGATT	59.614	47.826	0.00	0.00	0.00	3.01
1044	8099	2.962421	GTCGAGGAAGAGGAGAATGGAT	59.038	50.000	0.00	0.00	0.00	3.41
1045	8100	2.379972	GTCGAGGAAGAGGAGAATGGA	58.620	52.381	0.00	0.00	0.00	3.41
1046	8101	1.066303	CGTCGAGGAAGAGGAGAATGG	59.934	57.143	0.00	0.00	0.00	3.16
1049	8111	1.451067	GACGTCGAGGAAGAGGAGAA	58.549	55.000	12.85	0.00	0.00	2.87
1131	8200	1.136329	AAAGGAGGAGGAGCCAGCAA	61.136	55.000	0.00	0.00	40.02	3.91
1235	8304	9.063615	TCGTCCATGCATACGATATAAGTATAT	57.936	33.333	18.32	0.00	42.74	0.86
1236	8305	8.441312	TCGTCCATGCATACGATATAAGTATA	57.559	34.615	18.32	0.00	42.74	1.47
1237	8306	7.329588	TCGTCCATGCATACGATATAAGTAT	57.670	36.000	18.32	0.00	42.74	2.12
1238	8307	6.746745	TCGTCCATGCATACGATATAAGTA	57.253	37.500	18.32	0.00	42.74	2.24
1239	8308	5.638596	TCGTCCATGCATACGATATAAGT	57.361	39.130	18.32	0.00	42.74	2.24
1248	8317	4.102561	TGCGTCGTCCATGCATAC	57.897	55.556	0.00	0.00	42.48	2.39
1279	8348	0.313987	TCGACGTGTGCACTCTCATT	59.686	50.000	19.41	0.00	0.00	2.57
1291	8360	9.531412	TTATTACACAAAAACAATATCGACGTG	57.469	29.630	0.00	0.00	0.00	4.49
1292	8361	9.532697	GTTATTACACAAAAACAATATCGACGT	57.467	29.630	0.00	0.00	0.00	4.34
1293	8362	8.709086	CGTTATTACACAAAAACAATATCGACG	58.291	33.333	0.00	0.00	32.08	5.12
1294	8363	8.509923	GCGTTATTACACAAAAACAATATCGAC	58.490	33.333	0.00	0.00	32.08	4.20
1295	8364	8.228464	TGCGTTATTACACAAAAACAATATCGA	58.772	29.630	0.00	0.00	32.08	3.59
1296	8365	8.370711	TGCGTTATTACACAAAAACAATATCG	57.629	30.769	0.00	0.00	32.89	2.92
1298	8367	8.643752	GCTTGCGTTATTACACAAAAACAATAT	58.356	29.630	0.00	0.00	0.00	1.28
1299	8368	7.648112	TGCTTGCGTTATTACACAAAAACAATA	59.352	29.630	0.00	0.00	0.00	1.90
1300	8369	6.477033	TGCTTGCGTTATTACACAAAAACAAT	59.523	30.769	0.00	0.00	0.00	2.71
1678	8826	1.528586	GATGGATCAATCACGAAGCGG	59.471	52.381	5.11	0.00	0.00	5.52
1719	8894	2.701807	CGAGCGAGCAAAGAAATCATG	58.298	47.619	0.00	0.00	0.00	3.07
1767	8948	4.373116	GCGTCGACCCTGAAGGCA	62.373	66.667	10.58	0.00	40.58	4.75
2085	9266	1.263217	GGCGCGACTAATTAACATGGG	59.737	52.381	12.10	0.00	0.00	4.00
2113	9294	2.296073	ACGCCCTTTATCCCAAAACA	57.704	45.000	0.00	0.00	0.00	2.83
2114	9295	3.671008	AAACGCCCTTTATCCCAAAAC	57.329	42.857	0.00	0.00	0.00	2.43
2303	9693	5.073478	CGAAAGATTGAAGAACGCAACTAC	58.927	41.667	0.00	0.00	0.00	2.73
2344	9734	3.316071	TTACAGGCGTCGTAATTTGGA	57.684	42.857	0.00	0.00	0.00	3.53
2461	10210	2.151202	ACACTGGCTACAATCCAAACG	58.849	47.619	0.00	0.00	32.41	3.60
2506	10255	6.536224	GGTGGCAAATCAAATGAAATCTTAGG	59.464	38.462	0.00	0.00	0.00	2.69
2533	10282	1.429423	GTACATTTGGCAGCTCGGC	59.571	57.895	0.00	3.31	41.67	5.54
2625	10384	9.597999	GTTCGGTCGTTAGTTTTGTTTATTATT	57.402	29.630	0.00	0.00	0.00	1.40
2626	10385	8.229811	GGTTCGGTCGTTAGTTTTGTTTATTAT	58.770	33.333	0.00	0.00	0.00	1.28
2627	10386	7.225538	TGGTTCGGTCGTTAGTTTTGTTTATTA	59.774	33.333	0.00	0.00	0.00	0.98
2693	10483	3.876320	GTCCCAGAACCTCTAGTACTACG	59.124	52.174	0.00	0.00	0.00	3.51
2720	10758	8.859236	AGAAAACCTTTTACTTATACTGGACC	57.141	34.615	0.00	0.00	0.00	4.46
2784	10822	2.901839	AGCCCGACACTCCTTTTACTTA	59.098	45.455	0.00	0.00	0.00	2.24
2909	10952	7.759886	TGTTATAATAGAGGATCAATACAGCGC	59.240	37.037	0.00	0.00	37.82	5.92
2964	11007	0.821517	ATTGCGTGGGTCTCGTATGA	59.178	50.000	0.00	0.00	0.00	2.15
3183	11242	1.202879	TCAGCCACCACGGAAAAATCT	60.203	47.619	0.00	0.00	36.56	2.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.