Multiple sequence alignment - TraesCS2D01G592200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G592200 chr2D 100.000 4507 0 0 1 4507 647433705 647429199 0.000000e+00 8323.0
1 TraesCS2D01G592200 chr2D 81.490 1329 208 26 1584 2892 647440209 647438899 0.000000e+00 1057.0
2 TraesCS2D01G592200 chr2A 98.541 1439 14 3 1457 2895 773074218 773075649 0.000000e+00 2534.0
3 TraesCS2D01G592200 chr2A 98.322 1192 20 0 3314 4505 773075635 773076826 0.000000e+00 2091.0
4 TraesCS2D01G592200 chr2A 81.565 1329 206 27 1584 2892 773064933 773066242 0.000000e+00 1061.0
5 TraesCS2D01G592200 chr2A 81.102 762 111 21 2163 2894 772746207 772745449 3.020000e-161 579.0
6 TraesCS2D01G592200 chr2A 96.604 265 6 1 1165 1426 773073953 773074217 1.930000e-118 436.0
7 TraesCS2D01G592200 chr2A 96.774 155 5 0 1005 1159 773072625 773072779 4.470000e-65 259.0
8 TraesCS2D01G592200 chr2A 93.443 122 3 2 766 884 773071336 773071455 4.630000e-40 176.0
9 TraesCS2D01G592200 chr2A 97.917 48 1 0 967 1014 773071782 773071829 2.890000e-12 84.2
10 TraesCS2D01G592200 chr1A 93.832 1297 63 6 1584 2875 118507580 118508864 0.000000e+00 1936.0
11 TraesCS2D01G592200 chr1A 87.311 662 58 14 3314 3974 118508975 118509611 0.000000e+00 734.0
12 TraesCS2D01G592200 chr1A 96.963 428 11 2 2893 3320 73776083 73775658 0.000000e+00 717.0
13 TraesCS2D01G592200 chr3B 97.959 637 11 2 50 686 821197473 821198107 0.000000e+00 1103.0
14 TraesCS2D01G592200 chr7D 96.890 643 14 5 45 686 616603002 616602365 0.000000e+00 1072.0
15 TraesCS2D01G592200 chr7D 96.186 236 6 3 47 282 503847347 503847579 2.540000e-102 383.0
16 TraesCS2D01G592200 chr7D 93.701 127 3 2 767 890 39785056 39784932 7.700000e-43 185.0
17 TraesCS2D01G592200 chr6A 96.088 639 24 1 48 686 2152009 2152646 0.000000e+00 1040.0
18 TraesCS2D01G592200 chr6A 95.550 427 16 3 2892 3317 563276315 563276739 0.000000e+00 680.0
19 TraesCS2D01G592200 chr6A 97.143 35 0 1 2436 2470 23677883 23677850 1.750000e-04 58.4
20 TraesCS2D01G592200 chr2B 80.813 1329 200 36 1584 2892 761280785 761279492 0.000000e+00 990.0
21 TraesCS2D01G592200 chr2B 83.748 1046 151 13 1584 2617 788636719 788637757 0.000000e+00 972.0
22 TraesCS2D01G592200 chr2B 81.618 408 67 8 2493 2894 788037318 788036913 9.350000e-87 331.0
23 TraesCS2D01G592200 chr2B 83.019 265 41 3 2215 2476 788044780 788044517 2.100000e-58 237.0
24 TraesCS2D01G592200 chr6D 94.173 635 35 2 53 686 24827746 24827113 0.000000e+00 966.0
25 TraesCS2D01G592200 chr6D 94.872 117 6 0 53 169 331204461 331204577 2.770000e-42 183.0
26 TraesCS2D01G592200 chr7B 90.312 640 54 4 55 694 456875944 456876575 0.000000e+00 832.0
27 TraesCS2D01G592200 chr5B 98.113 424 6 1 2893 3316 82464055 82463634 0.000000e+00 737.0
28 TraesCS2D01G592200 chr5B 80.508 118 23 0 1783 1900 473284899 473285016 1.730000e-14 91.6
29 TraesCS2D01G592200 chr3A 97.882 425 7 2 2893 3317 603273557 603273135 0.000000e+00 734.0
30 TraesCS2D01G592200 chr7A 97.647 425 6 4 2893 3316 40794457 40794878 0.000000e+00 726.0
31 TraesCS2D01G592200 chr7A 93.692 428 23 2 2891 3318 690045830 690045407 4.920000e-179 638.0
32 TraesCS2D01G592200 chr5A 95.327 428 14 5 2890 3316 546819148 546819570 0.000000e+00 675.0
33 TraesCS2D01G592200 chr5A 89.118 340 9 9 61 396 19536252 19536567 9.080000e-107 398.0
34 TraesCS2D01G592200 chr5A 79.365 126 21 5 1778 1901 481923327 481923205 2.890000e-12 84.2
35 TraesCS2D01G592200 chr4A 95.294 425 18 1 2893 3317 97813837 97814259 0.000000e+00 673.0
36 TraesCS2D01G592200 chr4A 95.059 425 18 3 2893 3316 167468440 167468862 0.000000e+00 665.0
37 TraesCS2D01G592200 chr1D 94.789 403 16 3 49 451 478341426 478341029 1.380000e-174 623.0
38 TraesCS2D01G592200 chr3D 98.496 133 2 0 53 185 480121735 480121867 7.540000e-58 235.0
39 TraesCS2D01G592200 chr5D 80.508 118 23 0 1783 1900 393559639 393559756 1.730000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G592200 chr2D 647429199 647433705 4506 True 8323.000000 8323 100.0000 1 4507 1 chr2D.!!$R1 4506
1 TraesCS2D01G592200 chr2D 647438899 647440209 1310 True 1057.000000 1057 81.4900 1584 2892 1 chr2D.!!$R2 1308
2 TraesCS2D01G592200 chr2A 773064933 773066242 1309 False 1061.000000 1061 81.5650 1584 2892 1 chr2A.!!$F1 1308
3 TraesCS2D01G592200 chr2A 773071336 773076826 5490 False 930.033333 2534 96.9335 766 4505 6 chr2A.!!$F2 3739
4 TraesCS2D01G592200 chr2A 772745449 772746207 758 True 579.000000 579 81.1020 2163 2894 1 chr2A.!!$R1 731
5 TraesCS2D01G592200 chr1A 118507580 118509611 2031 False 1335.000000 1936 90.5715 1584 3974 2 chr1A.!!$F1 2390
6 TraesCS2D01G592200 chr3B 821197473 821198107 634 False 1103.000000 1103 97.9590 50 686 1 chr3B.!!$F1 636
7 TraesCS2D01G592200 chr7D 616602365 616603002 637 True 1072.000000 1072 96.8900 45 686 1 chr7D.!!$R2 641
8 TraesCS2D01G592200 chr6A 2152009 2152646 637 False 1040.000000 1040 96.0880 48 686 1 chr6A.!!$F1 638
9 TraesCS2D01G592200 chr2B 761279492 761280785 1293 True 990.000000 990 80.8130 1584 2892 1 chr2B.!!$R1 1308
10 TraesCS2D01G592200 chr2B 788636719 788637757 1038 False 972.000000 972 83.7480 1584 2617 1 chr2B.!!$F1 1033
11 TraesCS2D01G592200 chr6D 24827113 24827746 633 True 966.000000 966 94.1730 53 686 1 chr6D.!!$R1 633
12 TraesCS2D01G592200 chr7B 456875944 456876575 631 False 832.000000 832 90.3120 55 694 1 chr7B.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 898 0.038310 TCAGCCTCTCGTTCTCTCCA 59.962 55.0 0.00 0.0 0.0 3.86 F
1441 3664 0.038744 ATGGCCAGACAAAGACAGGG 59.961 55.0 13.05 0.0 0.0 4.45 F
1446 3669 0.322008 CAGACAAAGACAGGGGCCTC 60.322 60.0 0.84 0.0 0.0 4.70 F
2926 5298 0.330267 AAACCCGGGTGTATTGGAGG 59.670 55.0 31.05 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2894 5266 2.029380 CCCGGGTTTCAAAAATCCACTC 60.029 50.0 14.18 0.00 0.00 3.51 R
3275 5647 0.106015 GGGTGCATTGGAGCCCTATT 60.106 55.0 14.84 0.00 38.12 1.73 R
3292 5664 0.179001 AAGTCACTTTGGAACCCGGG 60.179 55.0 22.25 22.25 0.00 5.73 R
4130 6503 1.123077 TAGTGCACCAGGAGCATAGG 58.877 55.0 15.31 0.00 44.79 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.897872 CCGGAGGCGGTATTATTATTATTATT 57.102 34.615 0.00 0.00 46.14 1.40
33 34 9.985730 CCGGAGGCGGTATTATTATTATTATTA 57.014 33.333 0.00 0.00 46.14 0.98
211 212 1.080705 GTGTGCGCTACCTCGTTCT 60.081 57.895 9.73 0.00 0.00 3.01
343 345 6.150976 ACAAGCATTAATCACCTCAATCGAAA 59.849 34.615 0.00 0.00 0.00 3.46
422 424 3.207265 TCACTGCCAAAGTTTCTGCTA 57.793 42.857 7.85 0.00 36.83 3.49
596 598 1.134788 CCCACTTGATACCCAGACGAC 60.135 57.143 0.00 0.00 0.00 4.34
648 650 9.586435 GGATTTTTGATAGTTTAAACAGATGGG 57.414 33.333 20.06 0.00 0.00 4.00
673 675 4.307908 GCCGTTGCACACCGTGTC 62.308 66.667 0.00 0.00 35.75 3.67
733 735 8.833231 TTATTATTATTTGAGAAGAGCCGGAG 57.167 34.615 5.05 0.00 0.00 4.63
745 747 2.838225 CCGGAGGCGGTATCCAGT 60.838 66.667 0.00 0.00 46.14 4.00
746 748 2.417516 CGGAGGCGGTATCCAGTG 59.582 66.667 0.00 0.00 36.57 3.66
747 749 2.423898 CGGAGGCGGTATCCAGTGT 61.424 63.158 0.00 0.00 36.57 3.55
748 750 1.144057 GGAGGCGGTATCCAGTGTG 59.856 63.158 0.00 0.00 36.79 3.82
749 751 1.327690 GGAGGCGGTATCCAGTGTGA 61.328 60.000 0.00 0.00 36.79 3.58
750 752 0.753262 GAGGCGGTATCCAGTGTGAT 59.247 55.000 0.00 0.00 0.00 3.06
751 753 0.465705 AGGCGGTATCCAGTGTGATG 59.534 55.000 4.82 0.00 0.00 3.07
752 754 0.532862 GGCGGTATCCAGTGTGATGG 60.533 60.000 4.82 0.00 42.11 3.51
753 755 1.160329 GCGGTATCCAGTGTGATGGC 61.160 60.000 4.82 2.96 40.41 4.40
754 756 0.532862 CGGTATCCAGTGTGATGGCC 60.533 60.000 0.00 0.00 40.41 5.36
755 757 0.532862 GGTATCCAGTGTGATGGCCG 60.533 60.000 0.00 0.00 40.41 6.13
756 758 0.178068 GTATCCAGTGTGATGGCCGT 59.822 55.000 0.00 0.00 40.41 5.68
757 759 0.177836 TATCCAGTGTGATGGCCGTG 59.822 55.000 0.00 0.00 40.41 4.94
758 760 2.541547 ATCCAGTGTGATGGCCGTGG 62.542 60.000 0.00 0.00 40.41 4.94
759 761 2.347114 CAGTGTGATGGCCGTGGA 59.653 61.111 0.00 0.00 0.00 4.02
760 762 2.034879 CAGTGTGATGGCCGTGGAC 61.035 63.158 0.00 0.00 0.00 4.02
761 763 2.746277 GTGTGATGGCCGTGGACC 60.746 66.667 0.00 0.00 0.00 4.46
762 764 3.245346 TGTGATGGCCGTGGACCA 61.245 61.111 0.00 0.00 42.61 4.02
763 765 2.033448 GTGATGGCCGTGGACCAA 59.967 61.111 0.00 0.00 41.49 3.67
764 766 1.602323 GTGATGGCCGTGGACCAAA 60.602 57.895 0.00 0.00 41.49 3.28
771 773 1.537348 GGCCGTGGACCAAACTTTTTC 60.537 52.381 0.00 0.00 0.00 2.29
779 781 6.649557 CGTGGACCAAACTTTTTCTAGTCTAT 59.350 38.462 0.00 0.00 0.00 1.98
780 782 7.816031 CGTGGACCAAACTTTTTCTAGTCTATA 59.184 37.037 0.00 0.00 0.00 1.31
781 783 9.498176 GTGGACCAAACTTTTTCTAGTCTATAA 57.502 33.333 0.00 0.00 0.00 0.98
782 784 9.720769 TGGACCAAACTTTTTCTAGTCTATAAG 57.279 33.333 0.00 0.00 0.00 1.73
783 785 9.163899 GGACCAAACTTTTTCTAGTCTATAAGG 57.836 37.037 0.00 0.00 0.00 2.69
784 786 9.722184 GACCAAACTTTTTCTAGTCTATAAGGT 57.278 33.333 0.00 0.00 0.00 3.50
870 873 3.352338 GACCGACCAGCCCAGTACG 62.352 68.421 0.00 0.00 0.00 3.67
884 887 2.045242 TACGCGTCCTCAGCCTCT 60.045 61.111 18.63 0.00 0.00 3.69
886 889 4.544689 CGCGTCCTCAGCCTCTCG 62.545 72.222 0.00 0.00 0.00 4.04
887 890 3.444805 GCGTCCTCAGCCTCTCGT 61.445 66.667 0.00 0.00 0.00 4.18
888 891 2.995872 GCGTCCTCAGCCTCTCGTT 61.996 63.158 0.00 0.00 0.00 3.85
889 892 1.137825 CGTCCTCAGCCTCTCGTTC 59.862 63.158 0.00 0.00 0.00 3.95
890 893 1.309499 CGTCCTCAGCCTCTCGTTCT 61.309 60.000 0.00 0.00 0.00 3.01
891 894 0.454196 GTCCTCAGCCTCTCGTTCTC 59.546 60.000 0.00 0.00 0.00 2.87
892 895 0.329931 TCCTCAGCCTCTCGTTCTCT 59.670 55.000 0.00 0.00 0.00 3.10
893 896 0.738389 CCTCAGCCTCTCGTTCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
895 898 0.038310 TCAGCCTCTCGTTCTCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
896 899 0.455410 CAGCCTCTCGTTCTCTCCAG 59.545 60.000 0.00 0.00 0.00 3.86
897 900 0.682855 AGCCTCTCGTTCTCTCCAGG 60.683 60.000 0.00 0.00 0.00 4.45
898 901 1.813192 CCTCTCGTTCTCTCCAGGC 59.187 63.158 0.00 0.00 0.00 4.85
899 902 0.682855 CCTCTCGTTCTCTCCAGGCT 60.683 60.000 0.00 0.00 0.00 4.58
900 903 0.738389 CTCTCGTTCTCTCCAGGCTC 59.262 60.000 0.00 0.00 0.00 4.70
901 904 0.681564 TCTCGTTCTCTCCAGGCTCC 60.682 60.000 0.00 0.00 0.00 4.70
902 905 0.682855 CTCGTTCTCTCCAGGCTCCT 60.683 60.000 0.00 0.00 0.00 3.69
903 906 0.681564 TCGTTCTCTCCAGGCTCCTC 60.682 60.000 0.00 0.00 0.00 3.71
904 907 1.813192 GTTCTCTCCAGGCTCCTCG 59.187 63.158 0.00 0.00 0.00 4.63
905 908 2.055042 TTCTCTCCAGGCTCCTCGC 61.055 63.158 0.00 0.00 38.13 5.03
935 938 4.426112 CGCTCGTCTCAGCAGCCA 62.426 66.667 0.00 0.00 39.62 4.75
936 939 2.813042 GCTCGTCTCAGCAGCCAC 60.813 66.667 0.00 0.00 39.43 5.01
937 940 2.125753 CTCGTCTCAGCAGCCACC 60.126 66.667 0.00 0.00 0.00 4.61
938 941 2.917227 TCGTCTCAGCAGCCACCA 60.917 61.111 0.00 0.00 0.00 4.17
939 942 2.433838 CGTCTCAGCAGCCACCAG 60.434 66.667 0.00 0.00 0.00 4.00
940 943 2.745492 GTCTCAGCAGCCACCAGC 60.745 66.667 0.00 0.00 44.25 4.85
941 944 4.025858 TCTCAGCAGCCACCAGCC 62.026 66.667 0.00 0.00 45.47 4.85
959 962 3.195698 GCCGCCATCGACCACTTC 61.196 66.667 0.00 0.00 38.10 3.01
960 963 2.511600 CCGCCATCGACCACTTCC 60.512 66.667 0.00 0.00 38.10 3.46
961 964 2.579201 CGCCATCGACCACTTCCT 59.421 61.111 0.00 0.00 38.10 3.36
962 965 1.519455 CGCCATCGACCACTTCCTC 60.519 63.158 0.00 0.00 38.10 3.71
963 966 1.153349 GCCATCGACCACTTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
964 967 1.899437 GCCATCGACCACTTCCTCCA 61.899 60.000 0.00 0.00 0.00 3.86
965 968 0.108138 CCATCGACCACTTCCTCCAC 60.108 60.000 0.00 0.00 0.00 4.02
973 1220 1.190643 CACTTCCTCCACTCCTCCTC 58.809 60.000 0.00 0.00 0.00 3.71
1007 2059 3.495193 CAAGTTGAAGTTGGATGATGCG 58.505 45.455 4.85 0.00 0.00 4.73
1059 2111 2.973899 CCGAGGTGTGGAGGACAG 59.026 66.667 0.00 0.00 34.28 3.51
1131 2183 0.107312 CCTTCCCTCTCATGCACCAG 60.107 60.000 0.00 0.00 0.00 4.00
1144 2196 4.320456 ACCAGCGCACCTCCACAG 62.320 66.667 11.47 0.00 0.00 3.66
1285 3505 5.470098 AGATTACATGTTTCTGCGTTCAAGT 59.530 36.000 2.30 0.00 0.00 3.16
1353 3576 0.179119 GCAGATGGATTGGTTGCTGC 60.179 55.000 0.00 0.00 41.38 5.25
1384 3607 4.160626 AGGGTTAAGAGAATGAAGGTCTCG 59.839 45.833 0.00 0.00 45.19 4.04
1391 3614 0.674895 AATGAAGGTCTCGCACTGCC 60.675 55.000 0.00 0.00 0.00 4.85
1403 3626 0.879839 GCACTGCCGGCAAAATTGTT 60.880 50.000 32.09 5.64 0.00 2.83
1411 3634 2.542824 CCGGCAAAATTGTTCGTCAACT 60.543 45.455 0.00 0.00 38.97 3.16
1426 3649 1.199789 TCAACTGACGATGCAAATGGC 59.800 47.619 0.00 0.00 45.13 4.40
1427 3650 0.527565 AACTGACGATGCAAATGGCC 59.472 50.000 0.00 0.00 43.89 5.36
1428 3651 0.608856 ACTGACGATGCAAATGGCCA 60.609 50.000 8.56 8.56 43.89 5.36
1429 3652 0.099968 CTGACGATGCAAATGGCCAG 59.900 55.000 13.05 0.00 43.89 4.85
1430 3653 0.322366 TGACGATGCAAATGGCCAGA 60.322 50.000 13.05 0.00 43.89 3.86
1431 3654 0.099436 GACGATGCAAATGGCCAGAC 59.901 55.000 13.05 0.21 43.89 3.51
1432 3655 0.608856 ACGATGCAAATGGCCAGACA 60.609 50.000 13.05 6.93 43.89 3.41
1433 3656 0.527113 CGATGCAAATGGCCAGACAA 59.473 50.000 13.05 0.00 43.89 3.18
1434 3657 1.067706 CGATGCAAATGGCCAGACAAA 60.068 47.619 13.05 0.00 43.89 2.83
1435 3658 2.613691 GATGCAAATGGCCAGACAAAG 58.386 47.619 13.05 0.00 43.89 2.77
1436 3659 1.702182 TGCAAATGGCCAGACAAAGA 58.298 45.000 13.05 0.00 43.89 2.52
1437 3660 1.340889 TGCAAATGGCCAGACAAAGAC 59.659 47.619 13.05 0.00 43.89 3.01
1438 3661 1.340889 GCAAATGGCCAGACAAAGACA 59.659 47.619 13.05 0.00 36.11 3.41
1439 3662 2.608752 GCAAATGGCCAGACAAAGACAG 60.609 50.000 13.05 0.00 36.11 3.51
1440 3663 1.915141 AATGGCCAGACAAAGACAGG 58.085 50.000 13.05 0.00 0.00 4.00
1441 3664 0.038744 ATGGCCAGACAAAGACAGGG 59.961 55.000 13.05 0.00 0.00 4.45
1442 3665 1.303643 GGCCAGACAAAGACAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
1443 3666 1.973812 GCCAGACAAAGACAGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
1444 3667 1.303643 CCAGACAAAGACAGGGGCC 60.304 63.158 0.00 0.00 0.00 5.80
1445 3668 1.763770 CAGACAAAGACAGGGGCCT 59.236 57.895 0.84 0.00 0.00 5.19
1446 3669 0.322008 CAGACAAAGACAGGGGCCTC 60.322 60.000 0.84 0.00 0.00 4.70
1447 3670 0.768221 AGACAAAGACAGGGGCCTCA 60.768 55.000 4.79 0.00 0.00 3.86
1448 3671 0.606673 GACAAAGACAGGGGCCTCAC 60.607 60.000 4.79 0.00 0.00 3.51
1449 3672 1.303643 CAAAGACAGGGGCCTCACC 60.304 63.158 4.79 0.00 37.93 4.02
1550 3773 9.502091 AGTTACTAGTTGATAAATGCAGTTTCA 57.498 29.630 4.05 6.21 0.00 2.69
1551 3774 9.543018 GTTACTAGTTGATAAATGCAGTTTCAC 57.457 33.333 4.05 4.66 0.00 3.18
1552 3775 7.986085 ACTAGTTGATAAATGCAGTTTCACT 57.014 32.000 4.05 10.56 0.00 3.41
1553 3776 8.396272 ACTAGTTGATAAATGCAGTTTCACTT 57.604 30.769 4.05 3.05 0.00 3.16
1554 3777 8.850156 ACTAGTTGATAAATGCAGTTTCACTTT 58.150 29.630 4.05 0.00 0.00 2.66
1555 3778 9.334693 CTAGTTGATAAATGCAGTTTCACTTTC 57.665 33.333 4.05 1.22 0.00 2.62
1556 3779 7.945134 AGTTGATAAATGCAGTTTCACTTTCT 58.055 30.769 4.05 3.14 0.00 2.52
1640 3863 3.365064 GGCGTCTTCCTTTCTTAGCAAAC 60.365 47.826 0.00 0.00 0.00 2.93
1729 3952 1.337703 TCTGCAACATTGGTGCACTTC 59.662 47.619 24.95 0.83 34.61 3.01
1938 4161 0.482446 TTGGCTTGGGTCAAGGTGAT 59.518 50.000 9.34 0.00 41.31 3.06
2053 4282 5.957842 TCCAAATTACAATGCGAAGAACT 57.042 34.783 0.00 0.00 0.00 3.01
2893 5265 9.705103 ATGTTACTAGTAGTTAGTTATGGTGGA 57.295 33.333 8.40 0.00 42.57 4.02
2894 5266 9.182214 TGTTACTAGTAGTTAGTTATGGTGGAG 57.818 37.037 8.40 0.00 42.57 3.86
2895 5267 9.401058 GTTACTAGTAGTTAGTTATGGTGGAGA 57.599 37.037 8.40 0.00 42.57 3.71
2896 5268 9.624373 TTACTAGTAGTTAGTTATGGTGGAGAG 57.376 37.037 8.40 0.00 42.57 3.20
2897 5269 7.641249 ACTAGTAGTTAGTTATGGTGGAGAGT 58.359 38.462 0.00 0.00 39.64 3.24
2898 5270 6.777213 AGTAGTTAGTTATGGTGGAGAGTG 57.223 41.667 0.00 0.00 0.00 3.51
2899 5271 5.657302 AGTAGTTAGTTATGGTGGAGAGTGG 59.343 44.000 0.00 0.00 0.00 4.00
2900 5272 4.684724 AGTTAGTTATGGTGGAGAGTGGA 58.315 43.478 0.00 0.00 0.00 4.02
2901 5273 5.281314 AGTTAGTTATGGTGGAGAGTGGAT 58.719 41.667 0.00 0.00 0.00 3.41
2902 5274 5.726793 AGTTAGTTATGGTGGAGAGTGGATT 59.273 40.000 0.00 0.00 0.00 3.01
2903 5275 6.215636 AGTTAGTTATGGTGGAGAGTGGATTT 59.784 38.462 0.00 0.00 0.00 2.17
2904 5276 5.520748 AGTTATGGTGGAGAGTGGATTTT 57.479 39.130 0.00 0.00 0.00 1.82
2905 5277 5.892348 AGTTATGGTGGAGAGTGGATTTTT 58.108 37.500 0.00 0.00 0.00 1.94
2906 5278 5.711976 AGTTATGGTGGAGAGTGGATTTTTG 59.288 40.000 0.00 0.00 0.00 2.44
2907 5279 3.874383 TGGTGGAGAGTGGATTTTTGA 57.126 42.857 0.00 0.00 0.00 2.69
2908 5280 4.177537 TGGTGGAGAGTGGATTTTTGAA 57.822 40.909 0.00 0.00 0.00 2.69
2909 5281 4.541705 TGGTGGAGAGTGGATTTTTGAAA 58.458 39.130 0.00 0.00 0.00 2.69
2910 5282 4.340950 TGGTGGAGAGTGGATTTTTGAAAC 59.659 41.667 0.00 0.00 0.00 2.78
2911 5283 4.262036 GGTGGAGAGTGGATTTTTGAAACC 60.262 45.833 0.00 0.00 0.00 3.27
2912 5284 3.895041 TGGAGAGTGGATTTTTGAAACCC 59.105 43.478 0.00 0.00 0.00 4.11
2913 5285 3.057526 GGAGAGTGGATTTTTGAAACCCG 60.058 47.826 0.00 0.00 0.00 5.28
2914 5286 2.890945 AGAGTGGATTTTTGAAACCCGG 59.109 45.455 0.00 0.00 0.00 5.73
2915 5287 1.967779 AGTGGATTTTTGAAACCCGGG 59.032 47.619 22.25 22.25 0.00 5.73
2916 5288 1.689813 GTGGATTTTTGAAACCCGGGT 59.310 47.619 24.16 24.16 0.00 5.28
2917 5289 1.689273 TGGATTTTTGAAACCCGGGTG 59.311 47.619 31.05 0.00 0.00 4.61
2918 5290 1.689813 GGATTTTTGAAACCCGGGTGT 59.310 47.619 31.05 25.32 0.00 4.16
2919 5291 2.892215 GGATTTTTGAAACCCGGGTGTA 59.108 45.455 31.05 14.25 0.00 2.90
2920 5292 3.512329 GGATTTTTGAAACCCGGGTGTAT 59.488 43.478 31.05 17.48 0.00 2.29
2921 5293 4.020928 GGATTTTTGAAACCCGGGTGTATT 60.021 41.667 31.05 19.13 0.00 1.89
2922 5294 4.323553 TTTTTGAAACCCGGGTGTATTG 57.676 40.909 31.05 0.00 0.00 1.90
2923 5295 1.912417 TTGAAACCCGGGTGTATTGG 58.088 50.000 31.05 0.00 0.00 3.16
2924 5296 1.065647 TGAAACCCGGGTGTATTGGA 58.934 50.000 31.05 3.72 0.00 3.53
2925 5297 1.003812 TGAAACCCGGGTGTATTGGAG 59.996 52.381 31.05 0.00 0.00 3.86
2926 5298 0.330267 AAACCCGGGTGTATTGGAGG 59.670 55.000 31.05 0.00 0.00 4.30
2927 5299 0.548197 AACCCGGGTGTATTGGAGGA 60.548 55.000 31.05 0.00 0.00 3.71
2928 5300 1.269703 ACCCGGGTGTATTGGAGGAC 61.270 60.000 29.69 0.00 0.00 3.85
2929 5301 0.981277 CCCGGGTGTATTGGAGGACT 60.981 60.000 14.18 0.00 0.00 3.85
2930 5302 0.909623 CCGGGTGTATTGGAGGACTT 59.090 55.000 0.00 0.00 0.00 3.01
2931 5303 1.280998 CCGGGTGTATTGGAGGACTTT 59.719 52.381 0.00 0.00 0.00 2.66
2932 5304 2.502538 CCGGGTGTATTGGAGGACTTTA 59.497 50.000 0.00 0.00 0.00 1.85
2933 5305 3.135895 CCGGGTGTATTGGAGGACTTTAT 59.864 47.826 0.00 0.00 0.00 1.40
2934 5306 4.384868 CCGGGTGTATTGGAGGACTTTATT 60.385 45.833 0.00 0.00 0.00 1.40
2935 5307 5.190677 CGGGTGTATTGGAGGACTTTATTT 58.809 41.667 0.00 0.00 0.00 1.40
2936 5308 5.650703 CGGGTGTATTGGAGGACTTTATTTT 59.349 40.000 0.00 0.00 0.00 1.82
2937 5309 6.824704 CGGGTGTATTGGAGGACTTTATTTTA 59.175 38.462 0.00 0.00 0.00 1.52
2938 5310 7.337436 CGGGTGTATTGGAGGACTTTATTTTAA 59.663 37.037 0.00 0.00 0.00 1.52
2939 5311 9.027202 GGGTGTATTGGAGGACTTTATTTTAAA 57.973 33.333 0.00 0.00 0.00 1.52
2967 5339 9.883142 ACTTTGAAAATCACATTTAAGGTTTCA 57.117 25.926 0.00 0.00 33.10 2.69
3005 5377 8.570096 AAAAATTCTGCGTGATCATATGAATG 57.430 30.769 9.99 0.75 0.00 2.67
3006 5378 6.872628 AATTCTGCGTGATCATATGAATGT 57.127 33.333 9.99 0.00 34.50 2.71
3007 5379 7.967890 AATTCTGCGTGATCATATGAATGTA 57.032 32.000 9.99 0.00 34.50 2.29
3008 5380 8.557592 AATTCTGCGTGATCATATGAATGTAT 57.442 30.769 9.99 0.00 34.50 2.29
3009 5381 9.657419 AATTCTGCGTGATCATATGAATGTATA 57.343 29.630 9.99 0.00 34.50 1.47
3010 5382 9.828039 ATTCTGCGTGATCATATGAATGTATAT 57.172 29.630 9.99 0.00 34.50 0.86
3011 5383 9.657419 TTCTGCGTGATCATATGAATGTATATT 57.343 29.630 9.99 0.00 34.50 1.28
3014 5386 9.868277 TGCGTGATCATATGAATGTATATTACA 57.132 29.630 9.99 0.00 43.80 2.41
3035 5407 5.830912 ACACATGTGTAAAGTTTGGTGATG 58.169 37.500 29.66 0.00 42.90 3.07
3036 5408 5.592282 ACACATGTGTAAAGTTTGGTGATGA 59.408 36.000 29.66 0.00 42.90 2.92
3037 5409 6.096141 ACACATGTGTAAAGTTTGGTGATGAA 59.904 34.615 29.66 0.00 42.90 2.57
3038 5410 6.977502 CACATGTGTAAAGTTTGGTGATGAAA 59.022 34.615 18.03 0.00 0.00 2.69
3039 5411 7.652909 CACATGTGTAAAGTTTGGTGATGAAAT 59.347 33.333 18.03 0.00 0.00 2.17
3040 5412 8.855110 ACATGTGTAAAGTTTGGTGATGAAATA 58.145 29.630 0.00 0.00 0.00 1.40
3041 5413 9.689976 CATGTGTAAAGTTTGGTGATGAAATAA 57.310 29.630 0.00 0.00 0.00 1.40
3042 5414 9.912634 ATGTGTAAAGTTTGGTGATGAAATAAG 57.087 29.630 0.00 0.00 0.00 1.73
3043 5415 8.908903 TGTGTAAAGTTTGGTGATGAAATAAGT 58.091 29.630 0.00 0.00 0.00 2.24
3055 5427 9.463443 GGTGATGAAATAAGTAAATATGCAACC 57.537 33.333 0.00 0.00 0.00 3.77
3107 5479 9.798885 GATTTTCAGATAGTGAATAATACGTGC 57.201 33.333 0.00 0.00 44.89 5.34
3108 5480 8.710835 TTTTCAGATAGTGAATAATACGTGCA 57.289 30.769 0.00 0.00 44.89 4.57
3109 5481 7.694388 TTCAGATAGTGAATAATACGTGCAC 57.306 36.000 6.82 6.82 40.45 4.57
3110 5482 7.039313 TCAGATAGTGAATAATACGTGCACT 57.961 36.000 16.19 4.64 42.04 4.40
3111 5483 6.918022 TCAGATAGTGAATAATACGTGCACTG 59.082 38.462 16.19 11.05 39.84 3.66
3112 5484 6.697455 CAGATAGTGAATAATACGTGCACTGT 59.303 38.462 16.19 16.29 39.84 3.55
3113 5485 7.222805 CAGATAGTGAATAATACGTGCACTGTT 59.777 37.037 16.19 9.14 39.84 3.16
3114 5486 5.779806 AGTGAATAATACGTGCACTGTTC 57.220 39.130 16.19 10.42 38.30 3.18
3115 5487 5.234752 AGTGAATAATACGTGCACTGTTCA 58.765 37.500 16.19 12.86 38.30 3.18
3116 5488 5.874810 AGTGAATAATACGTGCACTGTTCAT 59.125 36.000 16.19 3.59 38.30 2.57
3117 5489 6.036083 AGTGAATAATACGTGCACTGTTCATC 59.964 38.462 16.19 10.28 38.30 2.92
3118 5490 6.036083 GTGAATAATACGTGCACTGTTCATCT 59.964 38.462 16.19 1.10 0.00 2.90
3119 5491 6.593770 TGAATAATACGTGCACTGTTCATCTT 59.406 34.615 16.19 5.87 0.00 2.40
3120 5492 6.985188 ATAATACGTGCACTGTTCATCTTT 57.015 33.333 16.19 5.55 0.00 2.52
3121 5493 4.928661 ATACGTGCACTGTTCATCTTTC 57.071 40.909 16.19 0.00 0.00 2.62
3122 5494 1.873591 ACGTGCACTGTTCATCTTTCC 59.126 47.619 16.19 0.00 0.00 3.13
3123 5495 1.872952 CGTGCACTGTTCATCTTTCCA 59.127 47.619 16.19 0.00 0.00 3.53
3124 5496 2.290367 CGTGCACTGTTCATCTTTCCAA 59.710 45.455 16.19 0.00 0.00 3.53
3125 5497 3.243035 CGTGCACTGTTCATCTTTCCAAA 60.243 43.478 16.19 0.00 0.00 3.28
3126 5498 4.681744 GTGCACTGTTCATCTTTCCAAAA 58.318 39.130 10.32 0.00 0.00 2.44
3127 5499 5.291971 GTGCACTGTTCATCTTTCCAAAAT 58.708 37.500 10.32 0.00 0.00 1.82
3128 5500 5.403466 GTGCACTGTTCATCTTTCCAAAATC 59.597 40.000 10.32 0.00 0.00 2.17
3129 5501 5.068855 TGCACTGTTCATCTTTCCAAAATCA 59.931 36.000 0.00 0.00 0.00 2.57
3130 5502 6.161381 GCACTGTTCATCTTTCCAAAATCAT 58.839 36.000 0.00 0.00 0.00 2.45
3131 5503 6.090358 GCACTGTTCATCTTTCCAAAATCATG 59.910 38.462 0.00 0.00 0.00 3.07
3132 5504 7.372714 CACTGTTCATCTTTCCAAAATCATGA 58.627 34.615 0.00 0.00 0.00 3.07
3133 5505 7.327761 CACTGTTCATCTTTCCAAAATCATGAC 59.672 37.037 0.00 0.00 0.00 3.06
3134 5506 7.232127 ACTGTTCATCTTTCCAAAATCATGACT 59.768 33.333 0.00 0.00 0.00 3.41
3135 5507 7.954835 TGTTCATCTTTCCAAAATCATGACTT 58.045 30.769 0.00 0.00 0.00 3.01
3136 5508 8.423349 TGTTCATCTTTCCAAAATCATGACTTT 58.577 29.630 0.00 0.00 0.00 2.66
3137 5509 8.706035 GTTCATCTTTCCAAAATCATGACTTTG 58.294 33.333 20.05 20.05 33.25 2.77
3138 5510 7.954835 TCATCTTTCCAAAATCATGACTTTGT 58.045 30.769 23.68 5.78 31.84 2.83
3139 5511 8.084073 TCATCTTTCCAAAATCATGACTTTGTC 58.916 33.333 23.68 0.00 31.84 3.18
3140 5512 7.345422 TCTTTCCAAAATCATGACTTTGTCA 57.655 32.000 23.68 10.63 46.90 3.58
3155 5527 7.821652 TGACTTTGTCATTTTTGTGTAACTCA 58.178 30.769 0.00 0.00 37.67 3.41
3156 5528 7.753132 TGACTTTGTCATTTTTGTGTAACTCAC 59.247 33.333 0.00 0.00 41.18 3.51
3157 5529 7.753132 GACTTTGTCATTTTTGTGTAACTCACA 59.247 33.333 0.00 0.00 42.33 3.58
3172 5544 8.995220 GTGTAACTCACATGGTTACTTATTTCA 58.005 33.333 18.35 1.51 45.19 2.69
3173 5545 9.214957 TGTAACTCACATGGTTACTTATTTCAG 57.785 33.333 18.35 0.00 45.19 3.02
3174 5546 6.743575 ACTCACATGGTTACTTATTTCAGC 57.256 37.500 0.00 0.00 0.00 4.26
3175 5547 6.237901 ACTCACATGGTTACTTATTTCAGCA 58.762 36.000 0.00 0.00 0.00 4.41
3176 5548 6.886459 ACTCACATGGTTACTTATTTCAGCAT 59.114 34.615 0.00 0.00 0.00 3.79
3177 5549 7.066284 ACTCACATGGTTACTTATTTCAGCATC 59.934 37.037 0.00 0.00 0.00 3.91
3178 5550 6.883756 TCACATGGTTACTTATTTCAGCATCA 59.116 34.615 0.00 0.00 0.00 3.07
3179 5551 7.392953 TCACATGGTTACTTATTTCAGCATCAA 59.607 33.333 0.00 0.00 0.00 2.57
3180 5552 8.028354 CACATGGTTACTTATTTCAGCATCAAA 58.972 33.333 0.00 0.00 0.00 2.69
3181 5553 8.584157 ACATGGTTACTTATTTCAGCATCAAAA 58.416 29.630 0.00 0.00 0.00 2.44
3182 5554 9.590451 CATGGTTACTTATTTCAGCATCAAAAT 57.410 29.630 0.00 0.00 0.00 1.82
3184 5556 9.995003 TGGTTACTTATTTCAGCATCAAAATTT 57.005 25.926 0.00 0.00 0.00 1.82
3189 5561 9.979578 ACTTATTTCAGCATCAAAATTTACACA 57.020 25.926 0.00 0.00 0.00 3.72
3192 5564 8.836268 ATTTCAGCATCAAAATTTACACATGT 57.164 26.923 0.00 0.00 0.00 3.21
3193 5565 7.640616 TTCAGCATCAAAATTTACACATGTG 57.359 32.000 24.25 24.25 0.00 3.21
3194 5566 6.747125 TCAGCATCAAAATTTACACATGTGT 58.253 32.000 32.47 32.47 46.87 3.72
3195 5567 7.880105 TCAGCATCAAAATTTACACATGTGTA 58.120 30.769 30.31 30.31 44.42 2.90
3263 5635 7.188468 TGAAACTTCAAAATAGCATTTTGGC 57.812 32.000 22.68 12.55 39.25 4.52
3264 5636 6.765036 TGAAACTTCAAAATAGCATTTTGGCA 59.235 30.769 22.68 14.50 39.25 4.92
3265 5637 6.544038 AACTTCAAAATAGCATTTTGGCAC 57.456 33.333 22.68 0.00 39.25 5.01
3266 5638 5.609423 ACTTCAAAATAGCATTTTGGCACA 58.391 33.333 22.68 9.88 39.25 4.57
3267 5639 5.697633 ACTTCAAAATAGCATTTTGGCACAG 59.302 36.000 22.68 17.77 42.39 3.66
3268 5640 5.212532 TCAAAATAGCATTTTGGCACAGT 57.787 34.783 22.68 0.00 42.39 3.55
3269 5641 5.609423 TCAAAATAGCATTTTGGCACAGTT 58.391 33.333 22.68 0.00 42.39 3.16
3270 5642 5.695816 TCAAAATAGCATTTTGGCACAGTTC 59.304 36.000 22.68 0.00 42.39 3.01
3271 5643 4.870123 AATAGCATTTTGGCACAGTTCA 57.130 36.364 0.00 0.00 42.39 3.18
3272 5644 4.870123 ATAGCATTTTGGCACAGTTCAA 57.130 36.364 0.00 0.00 42.39 2.69
3273 5645 3.540314 AGCATTTTGGCACAGTTCAAA 57.460 38.095 0.00 0.00 42.39 2.69
3274 5646 3.871485 AGCATTTTGGCACAGTTCAAAA 58.129 36.364 11.75 11.75 43.87 2.44
3275 5647 4.260170 AGCATTTTGGCACAGTTCAAAAA 58.740 34.783 12.84 2.55 43.27 1.94
3292 5664 3.893326 AAAAATAGGGCTCCAATGCAC 57.107 42.857 0.00 0.00 36.44 4.57
3293 5665 1.780503 AAATAGGGCTCCAATGCACC 58.219 50.000 0.00 0.00 36.97 5.01
3294 5666 0.106015 AATAGGGCTCCAATGCACCC 60.106 55.000 0.00 0.00 43.17 4.61
3298 5670 4.740822 GCTCCAATGCACCCGGGT 62.741 66.667 24.16 24.16 0.00 5.28
3299 5671 2.035626 CTCCAATGCACCCGGGTT 59.964 61.111 27.83 7.04 0.00 4.11
3300 5672 2.034999 TCCAATGCACCCGGGTTC 59.965 61.111 27.83 22.19 0.00 3.62
3301 5673 3.068064 CCAATGCACCCGGGTTCC 61.068 66.667 27.83 19.07 0.00 3.62
3302 5674 2.282816 CAATGCACCCGGGTTCCA 60.283 61.111 27.83 24.48 0.00 3.53
3303 5675 1.905843 CAATGCACCCGGGTTCCAA 60.906 57.895 27.83 10.39 0.00 3.53
3304 5676 1.152440 AATGCACCCGGGTTCCAAA 60.152 52.632 27.83 3.17 0.00 3.28
3305 5677 1.184970 AATGCACCCGGGTTCCAAAG 61.185 55.000 27.83 13.42 0.00 2.77
3306 5678 2.203437 GCACCCGGGTTCCAAAGT 60.203 61.111 27.83 0.00 0.00 2.66
3307 5679 2.561037 GCACCCGGGTTCCAAAGTG 61.561 63.158 27.83 11.75 0.00 3.16
3308 5680 1.149627 CACCCGGGTTCCAAAGTGA 59.850 57.895 27.83 0.00 0.00 3.41
3309 5681 1.149854 ACCCGGGTTCCAAAGTGAC 59.850 57.895 24.16 0.00 0.00 3.67
3310 5682 1.350310 ACCCGGGTTCCAAAGTGACT 61.350 55.000 24.16 0.00 0.00 3.41
3311 5683 0.179001 CCCGGGTTCCAAAGTGACTT 60.179 55.000 14.18 0.00 0.00 3.01
3312 5684 1.687563 CCGGGTTCCAAAGTGACTTT 58.312 50.000 4.45 4.45 33.58 2.66
3313 5685 2.028876 CCGGGTTCCAAAGTGACTTTT 58.971 47.619 8.03 0.00 30.60 2.27
3314 5686 2.429250 CCGGGTTCCAAAGTGACTTTTT 59.571 45.455 8.03 0.00 30.60 1.94
3315 5687 3.443976 CGGGTTCCAAAGTGACTTTTTG 58.556 45.455 8.03 3.03 35.75 2.44
3323 5695 5.912892 CCAAAGTGACTTTTTGGTTATGGT 58.087 37.500 8.03 0.00 46.04 3.55
3324 5696 5.752955 CCAAAGTGACTTTTTGGTTATGGTG 59.247 40.000 8.03 0.00 46.04 4.17
3427 5799 3.055167 TCAAGATCGTGGATGTTGGACAT 60.055 43.478 8.84 0.00 41.60 3.06
3705 6077 4.638421 TCGGTTATAGATTTTGTTGCTGGG 59.362 41.667 0.00 0.00 0.00 4.45
4072 6445 3.257393 TGTGGCAAAACACATTGTTCAC 58.743 40.909 0.00 0.00 45.70 3.18
4130 6503 7.173218 TGTTCTGTTCATCTACCTGATTTGTTC 59.827 37.037 0.00 0.00 32.05 3.18
4354 6727 9.461312 ACATAGCCAGAAGTTGAAATGTAATTA 57.539 29.630 0.00 0.00 33.67 1.40
4397 6770 5.047377 TGCCTGGTATTGAAATTTCTCCAAC 60.047 40.000 18.64 14.56 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.936787 TGATGGCATTCCCTCAAAAATAATAAT 58.063 29.630 0.00 0.00 34.64 1.28
46 47 8.316497 TGATGGCATTCCCTCAAAAATAATAA 57.684 30.769 0.00 0.00 34.64 1.40
51 52 4.141574 CCATGATGGCATTCCCTCAAAAAT 60.142 41.667 0.00 0.00 39.82 1.82
192 193 1.080705 GAACGAGGTAGCGCACACT 60.081 57.895 11.47 3.31 33.86 3.55
211 212 2.570415 TTGCATTGTAACCGGGAAGA 57.430 45.000 6.32 0.00 0.00 2.87
237 239 2.895404 GGCGGGTATGATAGGTTCAGTA 59.105 50.000 0.00 0.00 37.89 2.74
343 345 6.782986 TCATTCCATCCAATTAGAATCGGAT 58.217 36.000 0.00 0.00 38.84 4.18
422 424 2.289882 CCCACATCTCGGATGCACATAT 60.290 50.000 12.16 0.00 0.00 1.78
596 598 4.013267 AGTTCAGAAATGGACCTGTGAG 57.987 45.455 0.00 0.00 0.00 3.51
648 650 4.683334 GTGCAACGGCTGTTCGGC 62.683 66.667 8.28 10.86 41.91 5.54
707 709 9.442047 CTCCGGCTCTTCTCAAATAATAATAAT 57.558 33.333 0.00 0.00 0.00 1.28
708 710 7.878127 CCTCCGGCTCTTCTCAAATAATAATAA 59.122 37.037 0.00 0.00 0.00 1.40
709 711 7.386851 CCTCCGGCTCTTCTCAAATAATAATA 58.613 38.462 0.00 0.00 0.00 0.98
710 712 6.234177 CCTCCGGCTCTTCTCAAATAATAAT 58.766 40.000 0.00 0.00 0.00 1.28
711 713 5.611374 CCTCCGGCTCTTCTCAAATAATAA 58.389 41.667 0.00 0.00 0.00 1.40
712 714 4.503296 GCCTCCGGCTCTTCTCAAATAATA 60.503 45.833 0.00 0.00 46.69 0.98
713 715 3.745797 GCCTCCGGCTCTTCTCAAATAAT 60.746 47.826 0.00 0.00 46.69 1.28
714 716 2.420129 GCCTCCGGCTCTTCTCAAATAA 60.420 50.000 0.00 0.00 46.69 1.40
715 717 1.139058 GCCTCCGGCTCTTCTCAAATA 59.861 52.381 0.00 0.00 46.69 1.40
716 718 0.107459 GCCTCCGGCTCTTCTCAAAT 60.107 55.000 0.00 0.00 46.69 2.32
717 719 1.296715 GCCTCCGGCTCTTCTCAAA 59.703 57.895 0.00 0.00 46.69 2.69
718 720 2.982130 GCCTCCGGCTCTTCTCAA 59.018 61.111 0.00 0.00 46.69 3.02
729 731 2.417516 CACTGGATACCGCCTCCG 59.582 66.667 0.00 0.00 35.41 4.63
730 732 1.144057 CACACTGGATACCGCCTCC 59.856 63.158 0.00 0.00 0.00 4.30
731 733 0.753262 ATCACACTGGATACCGCCTC 59.247 55.000 0.00 0.00 0.00 4.70
732 734 0.465705 CATCACACTGGATACCGCCT 59.534 55.000 0.00 0.00 0.00 5.52
733 735 0.532862 CCATCACACTGGATACCGCC 60.533 60.000 0.00 0.00 38.69 6.13
734 736 1.160329 GCCATCACACTGGATACCGC 61.160 60.000 0.00 0.00 38.69 5.68
735 737 0.532862 GGCCATCACACTGGATACCG 60.533 60.000 0.00 0.00 38.69 4.02
736 738 0.532862 CGGCCATCACACTGGATACC 60.533 60.000 2.24 0.00 38.69 2.73
737 739 0.178068 ACGGCCATCACACTGGATAC 59.822 55.000 2.24 0.00 38.69 2.24
738 740 0.177836 CACGGCCATCACACTGGATA 59.822 55.000 2.24 0.00 38.69 2.59
739 741 1.078214 CACGGCCATCACACTGGAT 60.078 57.895 2.24 0.00 38.69 3.41
740 742 2.347114 CACGGCCATCACACTGGA 59.653 61.111 2.24 0.00 38.69 3.86
741 743 2.747460 CCACGGCCATCACACTGG 60.747 66.667 2.24 0.00 39.45 4.00
742 744 2.034879 GTCCACGGCCATCACACTG 61.035 63.158 2.24 0.00 0.00 3.66
743 745 2.347490 GTCCACGGCCATCACACT 59.653 61.111 2.24 0.00 0.00 3.55
744 746 2.746277 GGTCCACGGCCATCACAC 60.746 66.667 2.24 0.00 0.00 3.82
745 747 2.344878 TTTGGTCCACGGCCATCACA 62.345 55.000 2.24 0.00 35.71 3.58
746 748 1.602323 TTTGGTCCACGGCCATCAC 60.602 57.895 2.24 0.00 35.71 3.06
747 749 1.602323 GTTTGGTCCACGGCCATCA 60.602 57.895 2.24 0.00 35.71 3.07
748 750 0.893727 AAGTTTGGTCCACGGCCATC 60.894 55.000 2.24 0.00 35.71 3.51
749 751 0.469144 AAAGTTTGGTCCACGGCCAT 60.469 50.000 2.24 0.00 35.71 4.40
750 752 0.684805 AAAAGTTTGGTCCACGGCCA 60.685 50.000 2.24 0.00 0.00 5.36
751 753 0.462375 AAAAAGTTTGGTCCACGGCC 59.538 50.000 0.00 0.00 0.00 6.13
752 754 1.407618 AGAAAAAGTTTGGTCCACGGC 59.592 47.619 0.00 0.00 0.00 5.68
753 755 3.881089 ACTAGAAAAAGTTTGGTCCACGG 59.119 43.478 0.00 0.00 0.00 4.94
754 756 4.814771 AGACTAGAAAAAGTTTGGTCCACG 59.185 41.667 0.00 0.00 0.00 4.94
755 757 7.981102 ATAGACTAGAAAAAGTTTGGTCCAC 57.019 36.000 0.00 0.00 0.00 4.02
756 758 9.720769 CTTATAGACTAGAAAAAGTTTGGTCCA 57.279 33.333 0.00 0.00 0.00 4.02
757 759 9.163899 CCTTATAGACTAGAAAAAGTTTGGTCC 57.836 37.037 0.00 0.00 0.00 4.46
758 760 9.722184 ACCTTATAGACTAGAAAAAGTTTGGTC 57.278 33.333 0.00 0.00 0.00 4.02
870 873 2.875684 GAACGAGAGGCTGAGGACGC 62.876 65.000 0.00 0.00 0.00 5.19
884 887 0.681564 GAGGAGCCTGGAGAGAACGA 60.682 60.000 0.00 0.00 0.00 3.85
886 889 1.813192 CGAGGAGCCTGGAGAGAAC 59.187 63.158 0.00 0.00 0.00 3.01
887 890 2.055042 GCGAGGAGCCTGGAGAGAA 61.055 63.158 0.00 0.00 40.81 2.87
888 891 2.441164 GCGAGGAGCCTGGAGAGA 60.441 66.667 0.00 0.00 40.81 3.10
918 921 4.426112 TGGCTGCTGAGACGAGCG 62.426 66.667 0.00 0.00 42.32 5.03
919 922 2.813042 GTGGCTGCTGAGACGAGC 60.813 66.667 0.00 0.00 39.62 5.03
920 923 2.125753 GGTGGCTGCTGAGACGAG 60.126 66.667 0.00 0.00 0.00 4.18
921 924 2.917227 TGGTGGCTGCTGAGACGA 60.917 61.111 0.00 0.00 0.00 4.20
922 925 2.433838 CTGGTGGCTGCTGAGACG 60.434 66.667 0.00 0.00 0.00 4.18
923 926 2.745492 GCTGGTGGCTGCTGAGAC 60.745 66.667 0.00 0.00 38.06 3.36
924 927 4.025858 GGCTGGTGGCTGCTGAGA 62.026 66.667 0.00 0.00 41.46 3.27
942 945 3.195698 GAAGTGGTCGATGGCGGC 61.196 66.667 0.00 0.00 42.49 6.53
943 946 2.511600 GGAAGTGGTCGATGGCGG 60.512 66.667 0.00 0.00 38.28 6.13
944 947 1.519455 GAGGAAGTGGTCGATGGCG 60.519 63.158 0.00 0.00 39.35 5.69
945 948 1.153349 GGAGGAAGTGGTCGATGGC 60.153 63.158 0.00 0.00 0.00 4.40
946 949 0.108138 GTGGAGGAAGTGGTCGATGG 60.108 60.000 0.00 0.00 0.00 3.51
947 950 0.898320 AGTGGAGGAAGTGGTCGATG 59.102 55.000 0.00 0.00 0.00 3.84
948 951 1.187087 GAGTGGAGGAAGTGGTCGAT 58.813 55.000 0.00 0.00 0.00 3.59
949 952 0.898789 GGAGTGGAGGAAGTGGTCGA 60.899 60.000 0.00 0.00 0.00 4.20
950 953 0.900647 AGGAGTGGAGGAAGTGGTCG 60.901 60.000 0.00 0.00 0.00 4.79
951 954 0.899019 GAGGAGTGGAGGAAGTGGTC 59.101 60.000 0.00 0.00 0.00 4.02
952 955 0.545548 GGAGGAGTGGAGGAAGTGGT 60.546 60.000 0.00 0.00 0.00 4.16
953 956 0.252467 AGGAGGAGTGGAGGAAGTGG 60.252 60.000 0.00 0.00 0.00 4.00
954 957 1.190643 GAGGAGGAGTGGAGGAAGTG 58.809 60.000 0.00 0.00 0.00 3.16
955 958 0.323908 CGAGGAGGAGTGGAGGAAGT 60.324 60.000 0.00 0.00 0.00 3.01
956 959 1.040339 CCGAGGAGGAGTGGAGGAAG 61.040 65.000 0.00 0.00 45.00 3.46
957 960 1.000486 CCGAGGAGGAGTGGAGGAA 60.000 63.158 0.00 0.00 45.00 3.36
958 961 2.239439 ACCGAGGAGGAGTGGAGGA 61.239 63.158 0.00 0.00 45.00 3.71
959 962 2.055042 CACCGAGGAGGAGTGGAGG 61.055 68.421 0.00 0.00 45.00 4.30
960 963 1.304547 ACACCGAGGAGGAGTGGAG 60.305 63.158 0.00 0.00 42.37 3.86
961 964 1.304217 GACACCGAGGAGGAGTGGA 60.304 63.158 0.00 0.00 44.02 4.02
962 965 2.701780 CGACACCGAGGAGGAGTGG 61.702 68.421 0.00 0.00 44.02 4.00
963 966 1.674651 TCGACACCGAGGAGGAGTG 60.675 63.158 0.00 0.00 44.02 3.51
964 967 1.674980 GTCGACACCGAGGAGGAGT 60.675 63.158 11.55 0.00 46.52 3.85
965 968 0.107800 TAGTCGACACCGAGGAGGAG 60.108 60.000 19.50 0.00 46.52 3.69
973 1220 1.001048 TCAACTTGGTAGTCGACACCG 60.001 52.381 19.50 12.86 39.04 4.94
1007 2059 3.703127 ACGGAAGCTTCGTCCCCC 61.703 66.667 19.91 4.97 35.87 5.40
1081 2133 1.712977 GAGGAGAGCTTGCCATTGCG 61.713 60.000 8.32 0.00 41.78 4.85
1285 3505 5.454966 TGGCTAATATGGACACAGAGTAGA 58.545 41.667 1.64 0.00 38.40 2.59
1353 3576 7.120432 CCTTCATTCTCTTAACCCTTGAAGAAG 59.880 40.741 10.45 0.00 40.46 2.85
1384 3607 0.879839 AACAATTTTGCCGGCAGTGC 60.880 50.000 30.75 6.55 0.00 4.40
1391 3614 2.467305 CAGTTGACGAACAATTTTGCCG 59.533 45.455 0.00 4.76 40.76 5.69
1411 3634 0.322366 TCTGGCCATTTGCATCGTCA 60.322 50.000 5.51 0.00 43.89 4.35
1426 3649 1.303643 GGCCCCTGTCTTTGTCTGG 60.304 63.158 0.00 0.00 0.00 3.86
1427 3650 0.322008 GAGGCCCCTGTCTTTGTCTG 60.322 60.000 0.00 0.00 0.00 3.51
1428 3651 0.768221 TGAGGCCCCTGTCTTTGTCT 60.768 55.000 0.00 0.00 0.00 3.41
1429 3652 0.606673 GTGAGGCCCCTGTCTTTGTC 60.607 60.000 0.00 0.00 0.00 3.18
1430 3653 1.456287 GTGAGGCCCCTGTCTTTGT 59.544 57.895 0.00 0.00 0.00 2.83
1431 3654 1.303643 GGTGAGGCCCCTGTCTTTG 60.304 63.158 0.00 0.00 0.00 2.77
1432 3655 3.171348 GGTGAGGCCCCTGTCTTT 58.829 61.111 0.00 0.00 0.00 2.52
1442 3665 2.203480 TTGTTGGCAGGGTGAGGC 60.203 61.111 0.00 0.00 0.00 4.70
1443 3666 1.604593 CCTTGTTGGCAGGGTGAGG 60.605 63.158 0.00 0.00 37.12 3.86
1444 3667 4.085876 CCTTGTTGGCAGGGTGAG 57.914 61.111 0.00 0.00 37.12 3.51
1453 3676 1.338674 TGAGTGGTATCGCCTTGTTGG 60.339 52.381 0.00 0.00 38.35 3.77
1454 3677 2.002586 CTGAGTGGTATCGCCTTGTTG 58.997 52.381 0.00 0.00 38.35 3.33
1455 3678 1.899814 TCTGAGTGGTATCGCCTTGTT 59.100 47.619 0.00 0.00 38.35 2.83
1550 3773 7.226523 AGTGTTTGTTCTTTGCAAAAAGAAAGT 59.773 29.630 13.84 0.00 46.60 2.66
1551 3774 7.575365 AGTGTTTGTTCTTTGCAAAAAGAAAG 58.425 30.769 13.84 0.00 46.60 2.62
1552 3775 7.489574 AGTGTTTGTTCTTTGCAAAAAGAAA 57.510 28.000 13.84 16.10 46.60 2.52
1553 3776 8.770438 ATAGTGTTTGTTCTTTGCAAAAAGAA 57.230 26.923 13.84 11.21 44.03 2.52
1554 3777 8.031864 TGATAGTGTTTGTTCTTTGCAAAAAGA 58.968 29.630 13.84 4.95 37.54 2.52
1555 3778 8.110002 GTGATAGTGTTTGTTCTTTGCAAAAAG 58.890 33.333 13.84 2.24 37.54 2.27
1556 3779 7.816995 AGTGATAGTGTTTGTTCTTTGCAAAAA 59.183 29.630 13.84 7.86 37.54 1.94
1640 3863 1.497278 CAAAGTGTCGGCGATGGTG 59.503 57.895 14.79 3.72 0.00 4.17
1938 4161 9.877178 CTTCTAAAATCTCTAGCTGTTTCCTTA 57.123 33.333 0.00 0.00 0.00 2.69
2053 4282 2.033550 GCCATTTGTCAACGTAACCACA 59.966 45.455 0.00 0.00 0.00 4.17
2892 5264 3.057526 CCGGGTTTCAAAAATCCACTCTC 60.058 47.826 0.00 0.00 0.00 3.20
2893 5265 2.890945 CCGGGTTTCAAAAATCCACTCT 59.109 45.455 0.00 0.00 0.00 3.24
2894 5266 2.029380 CCCGGGTTTCAAAAATCCACTC 60.029 50.000 14.18 0.00 0.00 3.51
2895 5267 1.967779 CCCGGGTTTCAAAAATCCACT 59.032 47.619 14.18 0.00 0.00 4.00
2896 5268 1.689813 ACCCGGGTTTCAAAAATCCAC 59.310 47.619 24.16 0.00 0.00 4.02
2897 5269 1.689273 CACCCGGGTTTCAAAAATCCA 59.311 47.619 27.83 0.00 0.00 3.41
2898 5270 1.689813 ACACCCGGGTTTCAAAAATCC 59.310 47.619 27.83 0.00 0.00 3.01
2899 5271 4.794278 ATACACCCGGGTTTCAAAAATC 57.206 40.909 27.83 0.00 0.00 2.17
2900 5272 4.262678 CCAATACACCCGGGTTTCAAAAAT 60.263 41.667 27.83 4.49 0.00 1.82
2901 5273 3.069729 CCAATACACCCGGGTTTCAAAAA 59.930 43.478 27.83 1.54 0.00 1.94
2902 5274 2.628657 CCAATACACCCGGGTTTCAAAA 59.371 45.455 27.83 2.02 0.00 2.44
2903 5275 2.158505 TCCAATACACCCGGGTTTCAAA 60.159 45.455 27.83 8.10 0.00 2.69
2904 5276 1.424302 TCCAATACACCCGGGTTTCAA 59.576 47.619 27.83 10.20 0.00 2.69
2905 5277 1.003812 CTCCAATACACCCGGGTTTCA 59.996 52.381 27.83 12.77 0.00 2.69
2906 5278 1.680860 CCTCCAATACACCCGGGTTTC 60.681 57.143 27.83 0.00 0.00 2.78
2907 5279 0.330267 CCTCCAATACACCCGGGTTT 59.670 55.000 27.83 22.53 0.00 3.27
2908 5280 0.548197 TCCTCCAATACACCCGGGTT 60.548 55.000 27.83 18.22 0.00 4.11
2909 5281 1.081462 TCCTCCAATACACCCGGGT 59.919 57.895 24.16 24.16 0.00 5.28
2910 5282 0.981277 AGTCCTCCAATACACCCGGG 60.981 60.000 22.25 22.25 0.00 5.73
2911 5283 0.909623 AAGTCCTCCAATACACCCGG 59.090 55.000 0.00 0.00 0.00 5.73
2912 5284 2.781681 AAAGTCCTCCAATACACCCG 57.218 50.000 0.00 0.00 0.00 5.28
2913 5285 8.584063 TTAAAATAAAGTCCTCCAATACACCC 57.416 34.615 0.00 0.00 0.00 4.61
2941 5313 9.883142 TGAAACCTTAAATGTGATTTTCAAAGT 57.117 25.926 0.00 0.00 33.82 2.66
2980 5352 8.192774 ACATTCATATGATCACGCAGAATTTTT 58.807 29.630 6.17 0.00 35.65 1.94
2981 5353 7.709947 ACATTCATATGATCACGCAGAATTTT 58.290 30.769 6.17 0.00 35.65 1.82
2982 5354 7.268199 ACATTCATATGATCACGCAGAATTT 57.732 32.000 6.17 0.00 35.65 1.82
2983 5355 6.872628 ACATTCATATGATCACGCAGAATT 57.127 33.333 6.17 0.00 35.65 2.17
2984 5356 9.828039 ATATACATTCATATGATCACGCAGAAT 57.172 29.630 6.17 3.22 35.65 2.40
2985 5357 9.657419 AATATACATTCATATGATCACGCAGAA 57.343 29.630 6.17 0.70 35.65 3.02
2988 5360 9.868277 TGTAATATACATTCATATGATCACGCA 57.132 29.630 6.17 0.00 35.65 5.24
3011 5383 6.768381 TCATCACCAAACTTTACACATGTGTA 59.232 34.615 30.31 30.31 44.42 2.90
3012 5384 5.592282 TCATCACCAAACTTTACACATGTGT 59.408 36.000 32.47 32.47 46.87 3.72
3013 5385 6.070897 TCATCACCAAACTTTACACATGTG 57.929 37.500 24.25 24.25 0.00 3.21
3014 5386 6.707440 TTCATCACCAAACTTTACACATGT 57.293 33.333 0.00 0.00 0.00 3.21
3015 5387 9.689976 TTATTTCATCACCAAACTTTACACATG 57.310 29.630 0.00 0.00 0.00 3.21
3016 5388 9.912634 CTTATTTCATCACCAAACTTTACACAT 57.087 29.630 0.00 0.00 0.00 3.21
3017 5389 8.908903 ACTTATTTCATCACCAAACTTTACACA 58.091 29.630 0.00 0.00 0.00 3.72
3029 5401 9.463443 GGTTGCATATTTACTTATTTCATCACC 57.537 33.333 0.00 0.00 0.00 4.02
3081 5453 9.798885 GCACGTATTATTCACTATCTGAAAATC 57.201 33.333 0.00 0.00 42.37 2.17
3082 5454 9.325198 TGCACGTATTATTCACTATCTGAAAAT 57.675 29.630 0.00 0.00 42.37 1.82
3083 5455 8.600625 GTGCACGTATTATTCACTATCTGAAAA 58.399 33.333 0.00 0.00 42.37 2.29
3084 5456 7.979537 AGTGCACGTATTATTCACTATCTGAAA 59.020 33.333 12.01 0.00 42.37 2.69
3085 5457 7.435192 CAGTGCACGTATTATTCACTATCTGAA 59.565 37.037 12.01 0.00 43.28 3.02
3086 5458 6.918022 CAGTGCACGTATTATTCACTATCTGA 59.082 38.462 12.01 0.00 36.37 3.27
3087 5459 6.697455 ACAGTGCACGTATTATTCACTATCTG 59.303 38.462 12.01 0.05 36.37 2.90
3088 5460 6.806751 ACAGTGCACGTATTATTCACTATCT 58.193 36.000 12.01 0.00 36.37 1.98
3089 5461 7.222031 TGAACAGTGCACGTATTATTCACTATC 59.778 37.037 12.01 3.58 36.37 2.08
3090 5462 7.039270 TGAACAGTGCACGTATTATTCACTAT 58.961 34.615 12.01 0.00 36.37 2.12
3091 5463 6.391537 TGAACAGTGCACGTATTATTCACTA 58.608 36.000 12.01 0.00 36.37 2.74
3092 5464 5.234752 TGAACAGTGCACGTATTATTCACT 58.765 37.500 12.01 0.00 38.40 3.41
3093 5465 5.524511 TGAACAGTGCACGTATTATTCAC 57.475 39.130 12.01 0.00 0.00 3.18
3094 5466 6.106003 AGATGAACAGTGCACGTATTATTCA 58.894 36.000 12.01 15.14 0.00 2.57
3095 5467 6.589830 AGATGAACAGTGCACGTATTATTC 57.410 37.500 12.01 10.34 0.00 1.75
3096 5468 6.985188 AAGATGAACAGTGCACGTATTATT 57.015 33.333 12.01 0.62 0.00 1.40
3097 5469 6.037172 GGAAAGATGAACAGTGCACGTATTAT 59.963 38.462 12.01 4.94 0.00 1.28
3098 5470 5.350365 GGAAAGATGAACAGTGCACGTATTA 59.650 40.000 12.01 0.00 0.00 0.98
3099 5471 4.154195 GGAAAGATGAACAGTGCACGTATT 59.846 41.667 12.01 7.10 0.00 1.89
3100 5472 3.684788 GGAAAGATGAACAGTGCACGTAT 59.315 43.478 12.01 0.51 0.00 3.06
3101 5473 3.064207 GGAAAGATGAACAGTGCACGTA 58.936 45.455 12.01 0.00 0.00 3.57
3102 5474 1.873591 GGAAAGATGAACAGTGCACGT 59.126 47.619 12.01 9.84 0.00 4.49
3103 5475 1.872952 TGGAAAGATGAACAGTGCACG 59.127 47.619 12.01 9.15 0.00 5.34
3104 5476 3.988379 TTGGAAAGATGAACAGTGCAC 57.012 42.857 9.40 9.40 0.00 4.57
3105 5477 4.998671 TTTTGGAAAGATGAACAGTGCA 57.001 36.364 0.00 0.00 0.00 4.57
3106 5478 5.531634 TGATTTTGGAAAGATGAACAGTGC 58.468 37.500 0.00 0.00 0.00 4.40
3107 5479 7.327761 GTCATGATTTTGGAAAGATGAACAGTG 59.672 37.037 0.00 0.00 0.00 3.66
3108 5480 7.232127 AGTCATGATTTTGGAAAGATGAACAGT 59.768 33.333 0.00 0.00 0.00 3.55
3109 5481 7.600065 AGTCATGATTTTGGAAAGATGAACAG 58.400 34.615 0.00 0.00 0.00 3.16
3110 5482 7.528996 AGTCATGATTTTGGAAAGATGAACA 57.471 32.000 0.00 0.00 0.00 3.18
3111 5483 8.706035 CAAAGTCATGATTTTGGAAAGATGAAC 58.294 33.333 27.35 0.00 35.29 3.18
3112 5484 8.423349 ACAAAGTCATGATTTTGGAAAGATGAA 58.577 29.630 33.69 0.00 40.80 2.57
3113 5485 7.954835 ACAAAGTCATGATTTTGGAAAGATGA 58.045 30.769 33.69 0.00 40.80 2.92
3114 5486 7.868922 TGACAAAGTCATGATTTTGGAAAGATG 59.131 33.333 33.69 16.88 40.80 2.90
3115 5487 7.954835 TGACAAAGTCATGATTTTGGAAAGAT 58.045 30.769 33.69 19.66 40.80 2.40
3116 5488 7.345422 TGACAAAGTCATGATTTTGGAAAGA 57.655 32.000 33.69 17.54 40.80 2.52
3130 5502 7.753132 GTGAGTTACACAAAAATGACAAAGTCA 59.247 33.333 1.95 1.95 46.00 3.41
3148 5520 8.175716 GCTGAAATAAGTAACCATGTGAGTTAC 58.824 37.037 12.83 12.83 46.45 2.50
3149 5521 7.880713 TGCTGAAATAAGTAACCATGTGAGTTA 59.119 33.333 0.00 0.00 0.00 2.24
3150 5522 6.714810 TGCTGAAATAAGTAACCATGTGAGTT 59.285 34.615 0.00 0.00 0.00 3.01
3151 5523 6.237901 TGCTGAAATAAGTAACCATGTGAGT 58.762 36.000 0.00 0.00 0.00 3.41
3152 5524 6.741992 TGCTGAAATAAGTAACCATGTGAG 57.258 37.500 0.00 0.00 0.00 3.51
3153 5525 6.883756 TGATGCTGAAATAAGTAACCATGTGA 59.116 34.615 0.00 0.00 0.00 3.58
3154 5526 7.087409 TGATGCTGAAATAAGTAACCATGTG 57.913 36.000 0.00 0.00 0.00 3.21
3155 5527 7.701539 TTGATGCTGAAATAAGTAACCATGT 57.298 32.000 0.00 0.00 0.00 3.21
3156 5528 8.984891 TTTTGATGCTGAAATAAGTAACCATG 57.015 30.769 0.00 0.00 0.00 3.66
3158 5530 9.995003 AAATTTTGATGCTGAAATAAGTAACCA 57.005 25.926 0.00 0.00 0.00 3.67
3163 5535 9.979578 TGTGTAAATTTTGATGCTGAAATAAGT 57.020 25.926 0.00 0.00 0.00 2.24
3166 5538 9.926158 ACATGTGTAAATTTTGATGCTGAAATA 57.074 25.926 0.00 0.00 0.00 1.40
3167 5539 8.714179 CACATGTGTAAATTTTGATGCTGAAAT 58.286 29.630 18.03 0.00 0.00 2.17
3168 5540 7.710044 ACACATGTGTAAATTTTGATGCTGAAA 59.290 29.630 29.66 0.00 42.90 2.69
3169 5541 7.208777 ACACATGTGTAAATTTTGATGCTGAA 58.791 30.769 29.66 0.00 42.90 3.02
3170 5542 6.747125 ACACATGTGTAAATTTTGATGCTGA 58.253 32.000 29.66 0.00 42.90 4.26
3238 5610 7.281774 TGCCAAAATGCTATTTTGAAGTTTCAA 59.718 29.630 23.97 3.28 44.78 2.69
3239 5611 6.765036 TGCCAAAATGCTATTTTGAAGTTTCA 59.235 30.769 23.97 14.01 40.73 2.69
3240 5612 7.071414 GTGCCAAAATGCTATTTTGAAGTTTC 58.929 34.615 23.97 12.58 40.73 2.78
3241 5613 6.541641 TGTGCCAAAATGCTATTTTGAAGTTT 59.458 30.769 23.97 0.00 40.73 2.66
3242 5614 6.054295 TGTGCCAAAATGCTATTTTGAAGTT 58.946 32.000 23.97 0.00 40.73 2.66
3243 5615 5.609423 TGTGCCAAAATGCTATTTTGAAGT 58.391 33.333 23.97 0.00 40.73 3.01
3244 5616 5.697633 ACTGTGCCAAAATGCTATTTTGAAG 59.302 36.000 23.97 18.87 40.73 3.02
3245 5617 5.609423 ACTGTGCCAAAATGCTATTTTGAA 58.391 33.333 23.97 14.82 40.73 2.69
3246 5618 5.212532 ACTGTGCCAAAATGCTATTTTGA 57.787 34.783 23.97 11.08 40.73 2.69
3247 5619 5.466058 TGAACTGTGCCAAAATGCTATTTTG 59.534 36.000 19.15 19.15 38.68 2.44
3248 5620 5.609423 TGAACTGTGCCAAAATGCTATTTT 58.391 33.333 0.00 0.00 0.00 1.82
3249 5621 5.212532 TGAACTGTGCCAAAATGCTATTT 57.787 34.783 0.00 0.00 0.00 1.40
3250 5622 4.870123 TGAACTGTGCCAAAATGCTATT 57.130 36.364 0.00 0.00 0.00 1.73
3251 5623 4.870123 TTGAACTGTGCCAAAATGCTAT 57.130 36.364 0.00 0.00 0.00 2.97
3252 5624 4.662468 TTTGAACTGTGCCAAAATGCTA 57.338 36.364 6.26 0.00 30.29 3.49
3253 5625 3.540314 TTTGAACTGTGCCAAAATGCT 57.460 38.095 6.26 0.00 30.29 3.79
3254 5626 4.612932 TTTTTGAACTGTGCCAAAATGC 57.387 36.364 16.64 0.00 40.55 3.56
3272 5644 2.501316 GGTGCATTGGAGCCCTATTTTT 59.499 45.455 0.00 0.00 0.00 1.94
3273 5645 2.110578 GGTGCATTGGAGCCCTATTTT 58.889 47.619 0.00 0.00 0.00 1.82
3274 5646 1.689258 GGGTGCATTGGAGCCCTATTT 60.689 52.381 14.84 0.00 38.12 1.40
3275 5647 0.106015 GGGTGCATTGGAGCCCTATT 60.106 55.000 14.84 0.00 38.12 1.73
3276 5648 1.538666 GGGTGCATTGGAGCCCTAT 59.461 57.895 14.84 0.00 38.12 2.57
3277 5649 3.006677 GGGTGCATTGGAGCCCTA 58.993 61.111 14.84 0.00 38.12 3.53
3278 5650 4.431131 CGGGTGCATTGGAGCCCT 62.431 66.667 19.11 0.00 38.97 5.19
3281 5653 4.740822 ACCCGGGTGCATTGGAGC 62.741 66.667 29.69 0.00 0.00 4.70
3282 5654 2.035626 AACCCGGGTGCATTGGAG 59.964 61.111 31.05 0.00 0.00 3.86
3283 5655 2.034999 GAACCCGGGTGCATTGGA 59.965 61.111 31.05 0.00 0.00 3.53
3284 5656 3.068064 GGAACCCGGGTGCATTGG 61.068 66.667 33.33 0.47 0.00 3.16
3285 5657 1.467678 TTTGGAACCCGGGTGCATTG 61.468 55.000 33.33 1.33 0.00 2.82
3286 5658 1.152440 TTTGGAACCCGGGTGCATT 60.152 52.632 33.33 15.52 0.00 3.56
3287 5659 1.606313 CTTTGGAACCCGGGTGCAT 60.606 57.895 33.33 15.95 0.00 3.96
3288 5660 2.203422 CTTTGGAACCCGGGTGCA 60.203 61.111 33.33 21.88 0.00 4.57
3289 5661 2.203437 ACTTTGGAACCCGGGTGC 60.203 61.111 31.05 28.06 0.00 5.01
3290 5662 1.149627 TCACTTTGGAACCCGGGTG 59.850 57.895 31.05 16.58 0.00 4.61
3291 5663 1.149854 GTCACTTTGGAACCCGGGT 59.850 57.895 24.16 24.16 0.00 5.28
3292 5664 0.179001 AAGTCACTTTGGAACCCGGG 60.179 55.000 22.25 22.25 0.00 5.73
3293 5665 1.687563 AAAGTCACTTTGGAACCCGG 58.312 50.000 0.68 0.00 31.98 5.73
3294 5666 3.443976 CAAAAAGTCACTTTGGAACCCG 58.556 45.455 2.78 0.00 33.64 5.28
3301 5673 5.752955 CCACCATAACCAAAAAGTCACTTTG 59.247 40.000 2.78 0.00 33.64 2.77
3302 5674 5.659079 TCCACCATAACCAAAAAGTCACTTT 59.341 36.000 0.00 0.00 34.94 2.66
3303 5675 5.205056 TCCACCATAACCAAAAAGTCACTT 58.795 37.500 0.00 0.00 0.00 3.16
3304 5676 4.798882 TCCACCATAACCAAAAAGTCACT 58.201 39.130 0.00 0.00 0.00 3.41
3305 5677 4.583073 ACTCCACCATAACCAAAAAGTCAC 59.417 41.667 0.00 0.00 0.00 3.67
3306 5678 4.798882 ACTCCACCATAACCAAAAAGTCA 58.201 39.130 0.00 0.00 0.00 3.41
3307 5679 5.784578 AACTCCACCATAACCAAAAAGTC 57.215 39.130 0.00 0.00 0.00 3.01
3308 5680 7.849322 AATAACTCCACCATAACCAAAAAGT 57.151 32.000 0.00 0.00 0.00 2.66
3309 5681 9.634163 GTTAATAACTCCACCATAACCAAAAAG 57.366 33.333 0.00 0.00 0.00 2.27
3310 5682 9.369672 AGTTAATAACTCCACCATAACCAAAAA 57.630 29.630 0.00 0.00 37.02 1.94
3311 5683 8.798402 CAGTTAATAACTCCACCATAACCAAAA 58.202 33.333 2.14 0.00 40.46 2.44
3312 5684 8.164733 TCAGTTAATAACTCCACCATAACCAAA 58.835 33.333 2.14 0.00 40.46 3.28
3313 5685 7.691213 TCAGTTAATAACTCCACCATAACCAA 58.309 34.615 2.14 0.00 40.46 3.67
3314 5686 7.260387 TCAGTTAATAACTCCACCATAACCA 57.740 36.000 2.14 0.00 40.46 3.67
3315 5687 8.621286 CATTCAGTTAATAACTCCACCATAACC 58.379 37.037 2.14 0.00 40.46 2.85
3316 5688 8.621286 CCATTCAGTTAATAACTCCACCATAAC 58.379 37.037 2.14 0.00 40.46 1.89
3317 5689 8.333235 ACCATTCAGTTAATAACTCCACCATAA 58.667 33.333 2.14 0.00 40.46 1.90
3318 5690 7.773224 CACCATTCAGTTAATAACTCCACCATA 59.227 37.037 2.14 0.00 40.46 2.74
3319 5691 6.603201 CACCATTCAGTTAATAACTCCACCAT 59.397 38.462 2.14 0.00 40.46 3.55
3320 5692 5.943416 CACCATTCAGTTAATAACTCCACCA 59.057 40.000 2.14 0.00 40.46 4.17
3321 5693 5.944007 ACACCATTCAGTTAATAACTCCACC 59.056 40.000 2.14 0.00 40.46 4.61
3322 5694 6.879458 AGACACCATTCAGTTAATAACTCCAC 59.121 38.462 2.14 0.00 40.46 4.02
3323 5695 7.016153 AGACACCATTCAGTTAATAACTCCA 57.984 36.000 2.14 0.00 40.46 3.86
3324 5696 7.923414 AAGACACCATTCAGTTAATAACTCC 57.077 36.000 2.14 0.00 40.46 3.85
3699 6071 6.926630 ATTTAAGGAAACAATAACCCAGCA 57.073 33.333 0.00 0.00 0.00 4.41
4008 6381 2.957402 GACCAATATCATGGGCTCCA 57.043 50.000 0.00 0.00 45.73 3.86
4072 6445 1.490621 CTTTTGCCCAGAAACGCTTG 58.509 50.000 0.00 0.00 0.00 4.01
4130 6503 1.123077 TAGTGCACCAGGAGCATAGG 58.877 55.000 15.31 0.00 44.79 2.57
4297 6670 3.072184 CCAGCAGAAGGAATAGCAGGTAT 59.928 47.826 0.00 0.00 0.00 2.73
4354 6727 3.474600 GCAGAAGCACATGGTGAGATAT 58.525 45.455 0.00 0.00 41.58 1.63
4397 6770 8.758633 CCATAACCTTTTCGATATGGTAGTAG 57.241 38.462 12.68 5.26 39.83 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.