Multiple sequence alignment - TraesCS2D01G591300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G591300 chr2D 100.000 3946 0 0 1 3946 646654725 646650780 0.000000e+00 7287.0
1 TraesCS2D01G591300 chr2D 84.374 2195 307 21 1006 3196 646505117 646502955 0.000000e+00 2121.0
2 TraesCS2D01G591300 chr2D 82.545 2200 352 17 1013 3194 646573971 646571786 0.000000e+00 1906.0
3 TraesCS2D01G591300 chr2D 84.338 1775 258 15 1430 3196 646911927 646913689 0.000000e+00 1720.0
4 TraesCS2D01G591300 chr2D 84.725 1473 203 18 1710 3168 647152360 647153824 0.000000e+00 1454.0
5 TraesCS2D01G591300 chr2D 82.612 1501 233 15 1711 3199 646497086 646495602 0.000000e+00 1301.0
6 TraesCS2D01G591300 chr2D 85.512 987 137 4 1003 1984 646633783 646632798 0.000000e+00 1026.0
7 TraesCS2D01G591300 chr2D 84.709 981 147 3 1005 1984 646809715 646810693 0.000000e+00 977.0
8 TraesCS2D01G591300 chr2D 84.821 975 145 3 1011 1984 646971678 646972650 0.000000e+00 977.0
9 TraesCS2D01G591300 chr2D 84.537 983 145 7 1005 1984 646787571 646788549 0.000000e+00 966.0
10 TraesCS2D01G591300 chr2D 84.506 981 149 3 1005 1984 646948941 646949919 0.000000e+00 966.0
11 TraesCS2D01G591300 chr2D 81.132 1219 209 18 1984 3196 646632512 646631309 0.000000e+00 957.0
12 TraesCS2D01G591300 chr2D 84.114 982 150 6 1005 1984 646893696 646894673 0.000000e+00 944.0
13 TraesCS2D01G591300 chr2D 84.061 985 148 7 1005 1984 647001054 647002034 0.000000e+00 941.0
14 TraesCS2D01G591300 chr2D 83.927 983 153 4 1005 1984 646851112 646852092 0.000000e+00 935.0
15 TraesCS2D01G591300 chr2D 94.010 384 21 2 60 443 520039776 520040157 8.220000e-162 580.0
16 TraesCS2D01G591300 chr2D 79.898 587 112 4 3208 3794 647153822 647154402 4.080000e-115 425.0
17 TraesCS2D01G591300 chr2D 100.000 119 0 0 4292 4410 646650434 646650316 2.060000e-53 220.0
18 TraesCS2D01G591300 chr2B 97.326 3328 83 6 624 3946 788796771 788800097 0.000000e+00 5648.0
19 TraesCS2D01G591300 chr2B 84.766 1280 191 4 1920 3196 788250322 788249044 0.000000e+00 1280.0
20 TraesCS2D01G591300 chr2B 85.631 1197 159 6 2002 3196 789132371 789131186 0.000000e+00 1245.0
21 TraesCS2D01G591300 chr2B 93.655 394 22 3 60 451 158137864 158138256 1.770000e-163 586.0
22 TraesCS2D01G591300 chr2B 92.308 403 28 3 61 461 109337613 109337212 1.780000e-158 569.0
23 TraesCS2D01G591300 chr2B 91.304 92 7 1 4319 4410 788800455 788800545 1.670000e-24 124.0
24 TraesCS2D01G591300 chrUn 94.330 388 20 2 60 446 49014191 49013805 1.060000e-165 593.0
25 TraesCS2D01G591300 chrUn 81.905 105 12 6 4 101 76461945 76462049 1.020000e-11 82.4
26 TraesCS2D01G591300 chr6A 94.531 384 16 4 60 439 446523336 446523718 4.910000e-164 588.0
27 TraesCS2D01G591300 chr6A 100.000 59 0 0 1 59 8495581 8495639 4.660000e-20 110.0
28 TraesCS2D01G591300 chr4A 93.687 396 20 5 60 451 609652989 609652595 4.910000e-164 588.0
29 TraesCS2D01G591300 chr4A 100.000 59 0 0 1 59 603027557 603027615 4.660000e-20 110.0
30 TraesCS2D01G591300 chr4A 98.333 60 1 0 1 60 605450139 605450080 6.030000e-19 106.0
31 TraesCS2D01G591300 chr2A 93.434 396 22 4 60 452 24395583 24395977 6.360000e-163 584.0
32 TraesCS2D01G591300 chr2A 86.224 196 8 3 443 619 698837254 698837059 1.250000e-45 195.0
33 TraesCS2D01G591300 chr2A 100.000 59 0 0 1 59 18863706 18863648 4.660000e-20 110.0
34 TraesCS2D01G591300 chr2A 98.361 61 1 0 1 61 20551434 20551494 1.680000e-19 108.0
35 TraesCS2D01G591300 chr7A 94.041 386 19 3 60 442 130300202 130299818 2.290000e-162 582.0
36 TraesCS2D01G591300 chr7A 95.385 65 3 0 1 65 18450738 18450674 2.170000e-18 104.0
37 TraesCS2D01G591300 chr3B 94.226 381 20 2 60 439 437812982 437813361 8.220000e-162 580.0
38 TraesCS2D01G591300 chr3A 88.298 188 7 1 443 615 421725374 421725561 1.240000e-50 211.0
39 TraesCS2D01G591300 chr3A 90.323 62 5 1 553 613 421724900 421724839 3.660000e-11 80.5
40 TraesCS2D01G591300 chr5B 82.778 180 14 3 453 616 21586752 21586930 1.280000e-30 145.0
41 TraesCS2D01G591300 chr5B 98.333 60 1 0 3 62 62223018 62222959 6.030000e-19 106.0
42 TraesCS2D01G591300 chr4D 78.610 187 22 7 446 616 63233512 63233696 1.680000e-19 108.0
43 TraesCS2D01G591300 chr1A 98.305 59 1 0 1 59 6180936 6180878 2.170000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G591300 chr2D 646650316 646654725 4409 True 3753.5 7287 100.0000 1 4410 2 chr2D.!!$R5 4409
1 TraesCS2D01G591300 chr2D 646502955 646505117 2162 True 2121.0 2121 84.3740 1006 3196 1 chr2D.!!$R2 2190
2 TraesCS2D01G591300 chr2D 646571786 646573971 2185 True 1906.0 1906 82.5450 1013 3194 1 chr2D.!!$R3 2181
3 TraesCS2D01G591300 chr2D 646911927 646913689 1762 False 1720.0 1720 84.3380 1430 3196 1 chr2D.!!$F6 1766
4 TraesCS2D01G591300 chr2D 646495602 646497086 1484 True 1301.0 1301 82.6120 1711 3199 1 chr2D.!!$R1 1488
5 TraesCS2D01G591300 chr2D 646631309 646633783 2474 True 991.5 1026 83.3220 1003 3196 2 chr2D.!!$R4 2193
6 TraesCS2D01G591300 chr2D 646809715 646810693 978 False 977.0 977 84.7090 1005 1984 1 chr2D.!!$F3 979
7 TraesCS2D01G591300 chr2D 646971678 646972650 972 False 977.0 977 84.8210 1011 1984 1 chr2D.!!$F8 973
8 TraesCS2D01G591300 chr2D 646787571 646788549 978 False 966.0 966 84.5370 1005 1984 1 chr2D.!!$F2 979
9 TraesCS2D01G591300 chr2D 646948941 646949919 978 False 966.0 966 84.5060 1005 1984 1 chr2D.!!$F7 979
10 TraesCS2D01G591300 chr2D 646893696 646894673 977 False 944.0 944 84.1140 1005 1984 1 chr2D.!!$F5 979
11 TraesCS2D01G591300 chr2D 647001054 647002034 980 False 941.0 941 84.0610 1005 1984 1 chr2D.!!$F9 979
12 TraesCS2D01G591300 chr2D 647152360 647154402 2042 False 939.5 1454 82.3115 1710 3794 2 chr2D.!!$F10 2084
13 TraesCS2D01G591300 chr2D 646851112 646852092 980 False 935.0 935 83.9270 1005 1984 1 chr2D.!!$F4 979
14 TraesCS2D01G591300 chr2B 788796771 788800545 3774 False 2886.0 5648 94.3150 624 4410 2 chr2B.!!$F2 3786
15 TraesCS2D01G591300 chr2B 788249044 788250322 1278 True 1280.0 1280 84.7660 1920 3196 1 chr2B.!!$R2 1276
16 TraesCS2D01G591300 chr2B 789131186 789132371 1185 True 1245.0 1245 85.6310 2002 3196 1 chr2B.!!$R3 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 375 0.027194 CCAAGATTCGTGCGCTCATG 59.973 55.000 9.73 0.0 0.00 3.07 F
622 623 0.037160 TCAAACGGGGCCTAAGTTCC 59.963 55.000 0.84 0.0 0.00 3.62 F
626 627 0.912487 ACGGGGCCTAAGTTCCATCA 60.912 55.000 0.84 0.0 0.00 3.07 F
1584 1589 0.959553 TGTTGACAGAGGGAGACGAC 59.040 55.000 0.00 0.0 0.00 4.34 F
2351 2685 1.678970 GGTGGGGTGCCTTTAGCTG 60.679 63.158 0.00 0.0 44.23 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1310 0.550914 TGAAACCCCTGAAGCTGTGT 59.449 50.000 0.0 0.0 0.0 3.72 R
2428 2762 2.679082 TCTAGCCCTGAACCCATAGAC 58.321 52.381 0.0 0.0 0.0 2.59 R
2502 2836 4.710375 TCTTTAGGTGTGGAGGTAGATCAC 59.290 45.833 0.0 0.0 0.0 3.06 R
2795 3130 0.955919 GGCTGCTGACCACCAACTAC 60.956 60.000 0.0 0.0 0.0 2.73 R
3881 4220 1.689813 TCCAACGCTACTCAACTTCCA 59.310 47.619 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.077930 GGGAACCGGGACTAAAGGC 60.078 63.158 6.32 0.00 40.86 4.35
20 21 1.077930 GGAACCGGGACTAAAGGCC 60.078 63.158 6.32 0.00 0.00 5.19
21 22 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
22 23 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
23 24 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
24 25 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
25 26 0.179702 CCGGGACTAAAGGCCCTTAC 59.820 60.000 18.97 0.00 42.40 2.34
26 27 0.179092 CGGGACTAAAGGCCCTTACG 60.179 60.000 18.97 1.56 42.40 3.18
27 28 1.197812 GGGACTAAAGGCCCTTACGA 58.802 55.000 14.19 0.00 41.31 3.43
28 29 1.556451 GGGACTAAAGGCCCTTACGAA 59.444 52.381 14.19 0.00 41.31 3.85
29 30 2.625737 GGACTAAAGGCCCTTACGAAC 58.374 52.381 0.00 0.00 0.00 3.95
30 31 2.625737 GACTAAAGGCCCTTACGAACC 58.374 52.381 0.00 0.00 0.00 3.62
31 32 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
32 33 0.249955 TAAAGGCCCTTACGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
33 34 2.473891 AAAGGCCCTTACGAACCGGG 62.474 60.000 6.32 0.00 41.06 5.73
34 35 3.393106 GGCCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 40.55 5.14
35 36 2.125391 GCCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 40.55 4.46
36 37 2.946346 GCCCTTACGAACCGGGACA 61.946 63.158 6.32 0.00 40.55 4.02
37 38 1.672898 CCCTTACGAACCGGGACAA 59.327 57.895 6.32 0.00 40.55 3.18
38 39 0.035176 CCCTTACGAACCGGGACAAA 59.965 55.000 6.32 0.00 40.55 2.83
39 40 1.542987 CCCTTACGAACCGGGACAAAA 60.543 52.381 6.32 0.00 40.55 2.44
40 41 1.802365 CCTTACGAACCGGGACAAAAG 59.198 52.381 6.32 3.70 0.00 2.27
41 42 1.802365 CTTACGAACCGGGACAAAAGG 59.198 52.381 6.32 0.00 0.00 3.11
42 43 0.603439 TACGAACCGGGACAAAAGGC 60.603 55.000 6.32 0.00 0.00 4.35
43 44 2.622962 CGAACCGGGACAAAAGGCC 61.623 63.158 6.32 0.00 0.00 5.19
44 45 2.596338 AACCGGGACAAAAGGCCG 60.596 61.111 6.32 0.00 0.00 6.13
45 46 4.653888 ACCGGGACAAAAGGCCGG 62.654 66.667 6.32 0.00 44.95 6.13
46 47 4.653888 CCGGGACAAAAGGCCGGT 62.654 66.667 1.90 0.00 37.48 5.28
47 48 2.596338 CGGGACAAAAGGCCGGTT 60.596 61.111 1.90 0.00 0.00 4.44
48 49 2.197605 CGGGACAAAAGGCCGGTTT 61.198 57.895 1.90 0.00 0.00 3.27
49 50 1.740332 CGGGACAAAAGGCCGGTTTT 61.740 55.000 1.90 0.00 0.00 2.43
50 51 0.032952 GGGACAAAAGGCCGGTTTTC 59.967 55.000 1.90 0.00 0.00 2.29
51 52 1.037493 GGACAAAAGGCCGGTTTTCT 58.963 50.000 1.90 0.00 0.00 2.52
52 53 2.232399 GGACAAAAGGCCGGTTTTCTA 58.768 47.619 1.90 0.00 0.00 2.10
53 54 2.030540 GGACAAAAGGCCGGTTTTCTAC 60.031 50.000 1.90 0.00 0.00 2.59
54 55 2.882761 GACAAAAGGCCGGTTTTCTACT 59.117 45.455 1.90 0.00 0.00 2.57
55 56 4.067192 GACAAAAGGCCGGTTTTCTACTA 58.933 43.478 1.90 0.00 0.00 1.82
56 57 4.070009 ACAAAAGGCCGGTTTTCTACTAG 58.930 43.478 1.90 0.00 0.00 2.57
57 58 4.070009 CAAAAGGCCGGTTTTCTACTAGT 58.930 43.478 1.90 0.00 0.00 2.57
58 59 3.329929 AAGGCCGGTTTTCTACTAGTG 57.670 47.619 5.39 0.00 0.00 2.74
59 60 2.532843 AGGCCGGTTTTCTACTAGTGA 58.467 47.619 5.39 0.00 0.00 3.41
60 61 3.105283 AGGCCGGTTTTCTACTAGTGAT 58.895 45.455 5.39 0.00 0.00 3.06
61 62 3.118738 AGGCCGGTTTTCTACTAGTGATG 60.119 47.826 5.39 0.00 0.00 3.07
62 63 3.195661 GCCGGTTTTCTACTAGTGATGG 58.804 50.000 5.39 0.00 0.00 3.51
63 64 3.195661 CCGGTTTTCTACTAGTGATGGC 58.804 50.000 5.39 0.00 0.00 4.40
64 65 3.369052 CCGGTTTTCTACTAGTGATGGCA 60.369 47.826 5.39 0.00 0.00 4.92
65 66 4.250464 CGGTTTTCTACTAGTGATGGCAA 58.750 43.478 5.39 0.00 0.00 4.52
66 67 4.092968 CGGTTTTCTACTAGTGATGGCAAC 59.907 45.833 5.39 1.26 0.00 4.17
67 68 5.246307 GGTTTTCTACTAGTGATGGCAACT 58.754 41.667 5.39 0.00 37.61 3.16
68 69 5.351740 GGTTTTCTACTAGTGATGGCAACTC 59.648 44.000 5.39 0.00 37.61 3.01
69 70 4.371855 TTCTACTAGTGATGGCAACTCG 57.628 45.455 5.39 0.00 37.61 4.18
70 71 2.688446 TCTACTAGTGATGGCAACTCGG 59.312 50.000 5.39 0.00 37.61 4.63
71 72 0.537188 ACTAGTGATGGCAACTCGGG 59.463 55.000 0.00 0.00 37.61 5.14
72 73 0.537188 CTAGTGATGGCAACTCGGGT 59.463 55.000 0.00 0.00 37.61 5.28
73 74 1.754803 CTAGTGATGGCAACTCGGGTA 59.245 52.381 0.00 0.00 37.61 3.69
74 75 0.981183 AGTGATGGCAACTCGGGTAA 59.019 50.000 0.00 0.00 37.61 2.85
75 76 1.349688 AGTGATGGCAACTCGGGTAAA 59.650 47.619 0.00 0.00 37.61 2.01
76 77 2.156098 GTGATGGCAACTCGGGTAAAA 58.844 47.619 0.00 0.00 37.61 1.52
77 78 2.554893 GTGATGGCAACTCGGGTAAAAA 59.445 45.455 0.00 0.00 37.61 1.94
78 79 2.817258 TGATGGCAACTCGGGTAAAAAG 59.183 45.455 0.00 0.00 37.61 2.27
79 80 2.642154 TGGCAACTCGGGTAAAAAGA 57.358 45.000 0.00 0.00 37.61 2.52
80 81 2.500229 TGGCAACTCGGGTAAAAAGAG 58.500 47.619 0.00 0.00 37.96 2.85
81 82 2.105134 TGGCAACTCGGGTAAAAAGAGA 59.895 45.455 0.00 0.00 36.03 3.10
82 83 2.742589 GGCAACTCGGGTAAAAAGAGAG 59.257 50.000 0.00 0.00 36.03 3.20
83 84 3.400255 GCAACTCGGGTAAAAAGAGAGT 58.600 45.455 0.00 0.00 43.16 3.24
86 87 3.400255 ACTCGGGTAAAAAGAGAGTTGC 58.600 45.455 0.00 0.00 38.86 4.17
87 88 2.742589 CTCGGGTAAAAAGAGAGTTGCC 59.257 50.000 0.00 0.00 34.13 4.52
88 89 2.105134 TCGGGTAAAAAGAGAGTTGCCA 59.895 45.455 0.00 0.00 31.65 4.92
89 90 2.225727 CGGGTAAAAAGAGAGTTGCCAC 59.774 50.000 0.00 0.00 31.65 5.01
90 91 2.557056 GGGTAAAAAGAGAGTTGCCACC 59.443 50.000 0.00 0.00 31.65 4.61
91 92 3.487372 GGTAAAAAGAGAGTTGCCACCT 58.513 45.455 0.00 0.00 30.54 4.00
92 93 3.253432 GGTAAAAAGAGAGTTGCCACCTG 59.747 47.826 0.00 0.00 30.54 4.00
93 94 1.322442 AAAAGAGAGTTGCCACCTGC 58.678 50.000 0.00 0.00 41.77 4.85
94 95 0.475906 AAAGAGAGTTGCCACCTGCT 59.524 50.000 0.00 0.00 42.00 4.24
95 96 0.475906 AAGAGAGTTGCCACCTGCTT 59.524 50.000 0.00 0.00 42.00 3.91
96 97 1.352083 AGAGAGTTGCCACCTGCTTA 58.648 50.000 0.00 0.00 42.00 3.09
97 98 1.912043 AGAGAGTTGCCACCTGCTTAT 59.088 47.619 0.00 0.00 42.00 1.73
98 99 3.107601 AGAGAGTTGCCACCTGCTTATA 58.892 45.455 0.00 0.00 42.00 0.98
99 100 3.519510 AGAGAGTTGCCACCTGCTTATAA 59.480 43.478 0.00 0.00 42.00 0.98
100 101 4.019321 AGAGAGTTGCCACCTGCTTATAAA 60.019 41.667 0.00 0.00 42.00 1.40
101 102 4.265073 AGAGTTGCCACCTGCTTATAAAG 58.735 43.478 0.00 0.00 42.00 1.85
114 115 4.150897 CTTATAAAGCACACTAGGGGCA 57.849 45.455 7.99 0.00 0.00 5.36
115 116 2.717639 ATAAAGCACACTAGGGGCAG 57.282 50.000 7.99 0.00 0.00 4.85
116 117 1.358152 TAAAGCACACTAGGGGCAGT 58.642 50.000 7.99 0.00 0.00 4.40
117 118 0.478507 AAAGCACACTAGGGGCAGTT 59.521 50.000 7.99 0.00 0.00 3.16
118 119 0.250901 AAGCACACTAGGGGCAGTTG 60.251 55.000 7.99 0.00 0.00 3.16
119 120 2.335712 GCACACTAGGGGCAGTTGC 61.336 63.158 0.00 0.00 41.14 4.17
137 138 1.522668 GCCATGTGCACTGTAGAACA 58.477 50.000 19.41 0.00 40.77 3.18
138 139 1.197721 GCCATGTGCACTGTAGAACAC 59.802 52.381 19.41 0.00 40.77 3.32
139 140 2.493035 CCATGTGCACTGTAGAACACA 58.507 47.619 19.41 11.83 46.16 3.72
142 143 2.493035 TGTGCACTGTAGAACACATGG 58.507 47.619 19.41 0.00 38.07 3.66
143 144 1.197721 GTGCACTGTAGAACACATGGC 59.802 52.381 10.32 0.00 36.29 4.40
144 145 1.202746 TGCACTGTAGAACACATGGCA 60.203 47.619 0.00 0.00 41.24 4.92
145 146 1.879380 GCACTGTAGAACACATGGCAA 59.121 47.619 0.00 0.00 36.29 4.52
146 147 2.350772 GCACTGTAGAACACATGGCAAC 60.351 50.000 0.00 0.00 36.29 4.17
147 148 3.141398 CACTGTAGAACACATGGCAACT 58.859 45.455 0.00 0.00 36.29 3.16
148 149 4.314961 CACTGTAGAACACATGGCAACTA 58.685 43.478 0.00 0.00 36.29 2.24
149 150 4.389992 CACTGTAGAACACATGGCAACTAG 59.610 45.833 0.00 0.00 36.29 2.57
150 151 3.334691 TGTAGAACACATGGCAACTAGC 58.665 45.455 0.00 0.00 35.55 3.42
151 152 3.244387 TGTAGAACACATGGCAACTAGCA 60.244 43.478 0.00 0.00 37.29 3.49
152 153 5.097686 TGTAGAACACATGGCAACTAGCAG 61.098 45.833 0.00 0.00 37.29 4.24
159 160 4.404691 GCAACTAGCAGCTTGGGT 57.595 55.556 0.00 0.00 44.79 4.51
160 161 1.878775 GCAACTAGCAGCTTGGGTG 59.121 57.895 0.00 4.37 44.79 4.61
161 162 0.890996 GCAACTAGCAGCTTGGGTGT 60.891 55.000 0.00 0.00 44.79 4.16
162 163 0.877071 CAACTAGCAGCTTGGGTGTG 59.123 55.000 0.00 0.00 33.19 3.82
163 164 0.250901 AACTAGCAGCTTGGGTGTGG 60.251 55.000 0.00 0.00 33.19 4.17
164 165 1.377725 CTAGCAGCTTGGGTGTGGG 60.378 63.158 0.00 0.00 33.19 4.61
165 166 1.841302 CTAGCAGCTTGGGTGTGGGA 61.841 60.000 0.00 0.00 33.19 4.37
166 167 1.841302 TAGCAGCTTGGGTGTGGGAG 61.841 60.000 0.00 0.00 33.19 4.30
167 168 3.160585 CAGCTTGGGTGTGGGAGA 58.839 61.111 0.00 0.00 0.00 3.71
168 169 1.002868 CAGCTTGGGTGTGGGAGAG 60.003 63.158 0.00 0.00 0.00 3.20
169 170 2.227036 AGCTTGGGTGTGGGAGAGG 61.227 63.158 0.00 0.00 0.00 3.69
170 171 2.224159 GCTTGGGTGTGGGAGAGGA 61.224 63.158 0.00 0.00 0.00 3.71
171 172 1.986413 CTTGGGTGTGGGAGAGGAG 59.014 63.158 0.00 0.00 0.00 3.69
172 173 0.545309 CTTGGGTGTGGGAGAGGAGA 60.545 60.000 0.00 0.00 0.00 3.71
173 174 0.836400 TTGGGTGTGGGAGAGGAGAC 60.836 60.000 0.00 0.00 0.00 3.36
174 175 2.352032 GGGTGTGGGAGAGGAGACG 61.352 68.421 0.00 0.00 0.00 4.18
175 176 2.352032 GGTGTGGGAGAGGAGACGG 61.352 68.421 0.00 0.00 0.00 4.79
176 177 2.037367 TGTGGGAGAGGAGACGGG 59.963 66.667 0.00 0.00 0.00 5.28
177 178 3.462678 GTGGGAGAGGAGACGGGC 61.463 72.222 0.00 0.00 0.00 6.13
180 181 3.827898 GGAGAGGAGACGGGCGTG 61.828 72.222 0.00 0.00 0.00 5.34
181 182 3.063084 GAGAGGAGACGGGCGTGT 61.063 66.667 0.00 0.00 0.00 4.49
182 183 3.343788 GAGAGGAGACGGGCGTGTG 62.344 68.421 0.00 0.00 0.00 3.82
183 184 4.436998 GAGGAGACGGGCGTGTGG 62.437 72.222 0.00 0.00 0.00 4.17
211 212 0.109132 GCAAATGCCCACACACTAGC 60.109 55.000 0.00 0.00 34.31 3.42
212 213 0.527565 CAAATGCCCACACACTAGCC 59.472 55.000 0.00 0.00 0.00 3.93
213 214 0.611896 AAATGCCCACACACTAGCCC 60.612 55.000 0.00 0.00 0.00 5.19
214 215 1.500783 AATGCCCACACACTAGCCCT 61.501 55.000 0.00 0.00 0.00 5.19
215 216 1.500783 ATGCCCACACACTAGCCCTT 61.501 55.000 0.00 0.00 0.00 3.95
216 217 1.675641 GCCCACACACTAGCCCTTG 60.676 63.158 0.00 0.00 0.00 3.61
217 218 1.761174 CCCACACACTAGCCCTTGT 59.239 57.895 0.00 0.00 0.00 3.16
223 224 2.833631 ACACTAGCCCTTGTGTGTAC 57.166 50.000 13.28 0.00 45.11 2.90
224 225 1.000506 ACACTAGCCCTTGTGTGTACG 59.999 52.381 13.28 0.00 45.11 3.67
225 226 1.000506 CACTAGCCCTTGTGTGTACGT 59.999 52.381 0.00 0.00 32.92 3.57
226 227 1.000506 ACTAGCCCTTGTGTGTACGTG 59.999 52.381 0.00 0.00 0.00 4.49
227 228 1.000506 CTAGCCCTTGTGTGTACGTGT 59.999 52.381 0.00 0.00 0.00 4.49
228 229 1.042229 AGCCCTTGTGTGTACGTGTA 58.958 50.000 0.00 0.00 0.00 2.90
229 230 1.413445 AGCCCTTGTGTGTACGTGTAA 59.587 47.619 0.00 0.00 0.00 2.41
230 231 2.158928 AGCCCTTGTGTGTACGTGTAAA 60.159 45.455 0.00 0.00 0.00 2.01
231 232 2.613133 GCCCTTGTGTGTACGTGTAAAA 59.387 45.455 0.00 0.00 0.00 1.52
232 233 3.303526 GCCCTTGTGTGTACGTGTAAAAG 60.304 47.826 0.00 0.00 0.00 2.27
233 234 3.872771 CCCTTGTGTGTACGTGTAAAAGT 59.127 43.478 0.00 0.00 0.00 2.66
234 235 4.260456 CCCTTGTGTGTACGTGTAAAAGTG 60.260 45.833 0.00 0.00 0.00 3.16
235 236 4.260456 CCTTGTGTGTACGTGTAAAAGTGG 60.260 45.833 0.00 0.00 0.00 4.00
236 237 2.608546 TGTGTGTACGTGTAAAAGTGGC 59.391 45.455 0.00 0.00 0.00 5.01
237 238 1.859703 TGTGTACGTGTAAAAGTGGCG 59.140 47.619 0.00 0.00 0.00 5.69
238 239 1.860326 GTGTACGTGTAAAAGTGGCGT 59.140 47.619 0.00 0.00 39.23 5.68
239 240 1.859703 TGTACGTGTAAAAGTGGCGTG 59.140 47.619 0.00 0.00 37.05 5.34
240 241 1.860326 GTACGTGTAAAAGTGGCGTGT 59.140 47.619 0.00 0.00 37.05 4.49
241 242 0.653636 ACGTGTAAAAGTGGCGTGTG 59.346 50.000 0.00 0.00 34.36 3.82
242 243 0.041663 CGTGTAAAAGTGGCGTGTGG 60.042 55.000 0.00 0.00 0.00 4.17
243 244 0.309612 GTGTAAAAGTGGCGTGTGGG 59.690 55.000 0.00 0.00 0.00 4.61
244 245 1.284715 GTAAAAGTGGCGTGTGGGC 59.715 57.895 0.00 0.00 42.69 5.36
245 246 2.255172 TAAAAGTGGCGTGTGGGCG 61.255 57.895 0.00 0.00 46.04 6.13
246 247 2.661840 TAAAAGTGGCGTGTGGGCGA 62.662 55.000 0.00 0.00 46.04 5.54
247 248 4.555709 AAGTGGCGTGTGGGCGAA 62.556 61.111 0.00 0.00 46.04 4.70
253 254 3.716006 CGTGTGGGCGAACTGCTG 61.716 66.667 0.00 0.00 45.43 4.41
254 255 2.280797 GTGTGGGCGAACTGCTGA 60.281 61.111 0.00 0.00 45.43 4.26
255 256 1.891919 GTGTGGGCGAACTGCTGAA 60.892 57.895 0.00 0.00 45.43 3.02
256 257 1.891919 TGTGGGCGAACTGCTGAAC 60.892 57.895 0.00 0.00 45.43 3.18
257 258 2.664851 TGGGCGAACTGCTGAACG 60.665 61.111 0.00 3.89 45.43 3.95
260 261 4.090057 GCGAACTGCTGAACGCCC 62.090 66.667 20.32 3.43 44.27 6.13
261 262 2.664851 CGAACTGCTGAACGCCCA 60.665 61.111 0.00 0.00 38.05 5.36
262 263 2.946762 GAACTGCTGAACGCCCAC 59.053 61.111 0.00 0.00 38.05 4.61
263 264 1.891919 GAACTGCTGAACGCCCACA 60.892 57.895 0.00 0.00 38.05 4.17
264 265 2.117941 GAACTGCTGAACGCCCACAC 62.118 60.000 0.00 0.00 38.05 3.82
265 266 2.591429 CTGCTGAACGCCCACACA 60.591 61.111 0.00 0.00 38.05 3.72
266 267 2.896801 CTGCTGAACGCCCACACAC 61.897 63.158 0.00 0.00 38.05 3.82
267 268 3.660111 GCTGAACGCCCACACACC 61.660 66.667 0.00 0.00 0.00 4.16
268 269 2.203139 CTGAACGCCCACACACCA 60.203 61.111 0.00 0.00 0.00 4.17
269 270 2.203139 TGAACGCCCACACACCAG 60.203 61.111 0.00 0.00 0.00 4.00
270 271 3.660111 GAACGCCCACACACCAGC 61.660 66.667 0.00 0.00 0.00 4.85
275 276 4.351054 CCCACACACCAGCCCCTC 62.351 72.222 0.00 0.00 0.00 4.30
276 277 4.351054 CCACACACCAGCCCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
277 278 3.252284 CACACACCAGCCCCTCCT 61.252 66.667 0.00 0.00 0.00 3.69
278 279 3.252284 ACACACCAGCCCCTCCTG 61.252 66.667 0.00 0.00 0.00 3.86
279 280 3.252284 CACACCAGCCCCTCCTGT 61.252 66.667 0.00 0.00 0.00 4.00
280 281 3.252284 ACACCAGCCCCTCCTGTG 61.252 66.667 0.00 0.00 0.00 3.66
281 282 3.252284 CACCAGCCCCTCCTGTGT 61.252 66.667 0.00 0.00 0.00 3.72
282 283 3.252284 ACCAGCCCCTCCTGTGTG 61.252 66.667 0.00 0.00 0.00 3.82
283 284 4.039092 CCAGCCCCTCCTGTGTGG 62.039 72.222 0.00 0.00 37.10 4.17
284 285 3.252284 CAGCCCCTCCTGTGTGGT 61.252 66.667 0.00 0.00 37.07 4.16
285 286 3.252284 AGCCCCTCCTGTGTGGTG 61.252 66.667 0.00 0.00 37.07 4.17
286 287 3.249189 GCCCCTCCTGTGTGGTGA 61.249 66.667 0.00 0.00 37.07 4.02
287 288 2.829384 GCCCCTCCTGTGTGGTGAA 61.829 63.158 0.00 0.00 37.07 3.18
288 289 1.843421 CCCCTCCTGTGTGGTGAAA 59.157 57.895 0.00 0.00 37.07 2.69
289 290 0.537371 CCCCTCCTGTGTGGTGAAAC 60.537 60.000 0.00 0.00 37.07 2.78
290 291 0.182537 CCCTCCTGTGTGGTGAAACA 59.817 55.000 0.00 0.00 39.98 2.83
291 292 1.597742 CCTCCTGTGTGGTGAAACAG 58.402 55.000 0.00 0.00 42.83 3.16
292 293 0.947244 CTCCTGTGTGGTGAAACAGC 59.053 55.000 0.00 0.00 42.03 4.40
293 294 0.465460 TCCTGTGTGGTGAAACAGCC 60.465 55.000 0.00 0.00 42.03 4.85
294 295 1.648720 CTGTGTGGTGAAACAGCCG 59.351 57.895 0.00 0.00 39.98 5.52
295 296 1.078072 TGTGTGGTGAAACAGCCGT 60.078 52.632 0.00 0.00 39.98 5.68
296 297 1.355210 GTGTGGTGAAACAGCCGTG 59.645 57.895 0.00 0.00 39.98 4.94
297 298 1.078072 TGTGGTGAAACAGCCGTGT 60.078 52.632 0.00 0.00 39.98 4.49
299 300 0.248458 GTGGTGAAACAGCCGTGTTG 60.248 55.000 0.00 0.00 46.68 3.33
300 301 1.358759 GGTGAAACAGCCGTGTTGG 59.641 57.895 0.00 0.00 46.68 3.77
309 310 4.752879 CCGTGTTGGCGATCGGGT 62.753 66.667 18.30 0.00 39.41 5.28
310 311 3.487202 CGTGTTGGCGATCGGGTG 61.487 66.667 18.30 0.00 0.00 4.61
311 312 2.047655 GTGTTGGCGATCGGGTGA 60.048 61.111 18.30 0.00 0.00 4.02
312 313 1.669760 GTGTTGGCGATCGGGTGAA 60.670 57.895 18.30 0.00 0.00 3.18
313 314 1.669760 TGTTGGCGATCGGGTGAAC 60.670 57.895 18.30 0.00 0.00 3.18
314 315 2.433491 TTGGCGATCGGGTGAACG 60.433 61.111 18.30 0.00 42.60 3.95
324 325 3.899395 GGTGAACGCCCACATACC 58.101 61.111 9.52 0.00 38.74 2.73
325 326 1.003112 GGTGAACGCCCACATACCA 60.003 57.895 9.52 0.00 38.74 3.25
326 327 1.024579 GGTGAACGCCCACATACCAG 61.025 60.000 9.52 0.00 38.74 4.00
327 328 1.024579 GTGAACGCCCACATACCAGG 61.025 60.000 3.27 0.00 37.04 4.45
328 329 2.045340 AACGCCCACATACCAGGC 60.045 61.111 0.00 0.00 43.53 4.85
329 330 3.638592 AACGCCCACATACCAGGCC 62.639 63.158 0.00 0.00 44.13 5.19
330 331 4.108299 CGCCCACATACCAGGCCA 62.108 66.667 5.01 0.00 44.13 5.36
331 332 2.358619 GCCCACATACCAGGCCAA 59.641 61.111 5.01 0.00 41.00 4.52
332 333 1.076044 GCCCACATACCAGGCCAAT 60.076 57.895 5.01 0.00 41.00 3.16
333 334 1.109323 GCCCACATACCAGGCCAATC 61.109 60.000 5.01 0.00 41.00 2.67
334 335 0.468029 CCCACATACCAGGCCAATCC 60.468 60.000 5.01 0.00 0.00 3.01
336 337 1.774254 CCACATACCAGGCCAATCCTA 59.226 52.381 5.01 0.00 45.52 2.94
337 338 2.487265 CCACATACCAGGCCAATCCTAC 60.487 54.545 5.01 0.00 45.52 3.18
338 339 1.416401 ACATACCAGGCCAATCCTACG 59.584 52.381 5.01 0.00 45.52 3.51
339 340 1.416401 CATACCAGGCCAATCCTACGT 59.584 52.381 5.01 0.00 45.52 3.57
340 341 0.828022 TACCAGGCCAATCCTACGTG 59.172 55.000 5.01 0.00 45.52 4.49
341 342 1.153168 CCAGGCCAATCCTACGTGG 60.153 63.158 5.01 0.00 45.52 4.94
347 348 2.225068 CCAATCCTACGTGGCACTAG 57.775 55.000 16.72 14.90 35.26 2.57
348 349 1.754803 CCAATCCTACGTGGCACTAGA 59.245 52.381 16.72 7.11 35.26 2.43
349 350 2.167693 CCAATCCTACGTGGCACTAGAA 59.832 50.000 16.72 0.86 35.26 2.10
350 351 3.369052 CCAATCCTACGTGGCACTAGAAA 60.369 47.826 16.72 8.34 35.26 2.52
351 352 3.521947 ATCCTACGTGGCACTAGAAAC 57.478 47.619 16.72 0.00 35.26 2.78
352 353 2.241160 TCCTACGTGGCACTAGAAACA 58.759 47.619 16.72 0.00 35.26 2.83
353 354 2.829720 TCCTACGTGGCACTAGAAACAT 59.170 45.455 16.72 0.00 35.26 2.71
354 355 2.930040 CCTACGTGGCACTAGAAACATG 59.070 50.000 16.72 0.00 0.00 3.21
355 356 1.156736 ACGTGGCACTAGAAACATGC 58.843 50.000 16.72 0.00 38.68 4.06
362 363 4.708726 GCACTAGAAACATGCCAAGATT 57.291 40.909 0.00 0.00 33.06 2.40
363 364 4.666237 GCACTAGAAACATGCCAAGATTC 58.334 43.478 0.00 0.00 33.06 2.52
364 365 4.728882 GCACTAGAAACATGCCAAGATTCG 60.729 45.833 0.00 0.00 33.06 3.34
365 366 4.393062 CACTAGAAACATGCCAAGATTCGT 59.607 41.667 0.00 0.00 0.00 3.85
366 367 3.837213 AGAAACATGCCAAGATTCGTG 57.163 42.857 0.00 0.00 0.00 4.35
367 368 2.095059 AGAAACATGCCAAGATTCGTGC 60.095 45.455 0.00 0.00 0.00 5.34
368 369 0.168788 AACATGCCAAGATTCGTGCG 59.831 50.000 0.00 0.00 0.00 5.34
369 370 1.584483 CATGCCAAGATTCGTGCGC 60.584 57.895 0.00 0.00 0.00 6.09
370 371 1.746615 ATGCCAAGATTCGTGCGCT 60.747 52.632 9.73 0.00 0.00 5.92
371 372 1.709147 ATGCCAAGATTCGTGCGCTC 61.709 55.000 9.73 3.51 0.00 5.03
372 373 2.390599 GCCAAGATTCGTGCGCTCA 61.391 57.895 9.73 0.00 0.00 4.26
373 374 1.709147 GCCAAGATTCGTGCGCTCAT 61.709 55.000 9.73 0.00 0.00 2.90
374 375 0.027194 CCAAGATTCGTGCGCTCATG 59.973 55.000 9.73 0.00 0.00 3.07
375 376 1.001624 CAAGATTCGTGCGCTCATGA 58.998 50.000 9.73 0.00 36.50 3.07
376 377 1.005242 CAAGATTCGTGCGCTCATGAG 60.005 52.381 18.84 18.84 39.23 2.90
406 407 3.049674 CACGCGTGTGGGCAAGAT 61.050 61.111 30.50 0.00 42.59 2.40
407 408 3.049674 ACGCGTGTGGGCAAGATG 61.050 61.111 12.93 0.00 0.00 2.90
408 409 4.465512 CGCGTGTGGGCAAGATGC 62.466 66.667 0.00 0.00 44.08 3.91
417 418 2.650196 GCAAGATGCAAACGCCCA 59.350 55.556 0.00 0.00 44.26 5.36
418 419 1.734117 GCAAGATGCAAACGCCCAC 60.734 57.895 0.00 0.00 44.26 4.61
419 420 1.659233 CAAGATGCAAACGCCCACA 59.341 52.632 0.00 0.00 0.00 4.17
420 421 0.664166 CAAGATGCAAACGCCCACAC 60.664 55.000 0.00 0.00 0.00 3.82
421 422 2.126888 GATGCAAACGCCCACACG 60.127 61.111 0.00 0.00 39.50 4.49
433 434 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
434 435 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
435 436 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
436 437 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
437 438 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
438 439 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
439 440 1.677052 ACGTGTGGGCGTTAACATTTT 59.323 42.857 6.39 0.00 43.04 1.82
440 441 2.287129 ACGTGTGGGCGTTAACATTTTC 60.287 45.455 6.39 0.00 43.04 2.29
441 442 2.312348 GTGTGGGCGTTAACATTTTCG 58.688 47.619 6.39 0.00 0.00 3.46
442 443 1.948145 TGTGGGCGTTAACATTTTCGT 59.052 42.857 6.39 0.00 0.00 3.85
443 444 2.358267 TGTGGGCGTTAACATTTTCGTT 59.642 40.909 6.39 0.00 0.00 3.85
444 445 3.181489 TGTGGGCGTTAACATTTTCGTTT 60.181 39.130 6.39 0.00 0.00 3.60
445 446 4.036027 TGTGGGCGTTAACATTTTCGTTTA 59.964 37.500 6.39 0.00 0.00 2.01
446 447 4.974888 GTGGGCGTTAACATTTTCGTTTAA 59.025 37.500 6.39 0.00 0.00 1.52
447 448 5.458126 GTGGGCGTTAACATTTTCGTTTAAA 59.542 36.000 6.39 0.00 0.00 1.52
448 449 6.020041 GTGGGCGTTAACATTTTCGTTTAAAA 60.020 34.615 6.39 0.00 41.21 1.52
449 450 6.532657 TGGGCGTTAACATTTTCGTTTAAAAA 59.467 30.769 6.39 0.00 40.37 1.94
470 471 6.620877 AAAAAGAGGTTGGAGGTTCTTTTT 57.379 33.333 14.57 14.57 46.67 1.94
498 499 9.981114 ATTAACAGAGAAAATACCAAGGTTTTG 57.019 29.630 0.00 0.00 0.00 2.44
508 509 2.689553 CAAGGTTTTGGGCAAACTGT 57.310 45.000 1.17 0.00 43.95 3.55
509 510 3.810310 CAAGGTTTTGGGCAAACTGTA 57.190 42.857 1.17 0.00 43.95 2.74
510 511 3.716601 CAAGGTTTTGGGCAAACTGTAG 58.283 45.455 1.17 0.00 43.95 2.74
511 512 3.026707 AGGTTTTGGGCAAACTGTAGT 57.973 42.857 1.17 0.00 43.95 2.73
512 513 4.173290 AGGTTTTGGGCAAACTGTAGTA 57.827 40.909 1.17 0.00 43.95 1.82
513 514 4.736473 AGGTTTTGGGCAAACTGTAGTAT 58.264 39.130 1.17 0.00 43.95 2.12
514 515 5.144832 AGGTTTTGGGCAAACTGTAGTATT 58.855 37.500 1.17 0.00 43.95 1.89
515 516 6.308566 AGGTTTTGGGCAAACTGTAGTATTA 58.691 36.000 1.17 0.00 43.95 0.98
516 517 6.778559 AGGTTTTGGGCAAACTGTAGTATTAA 59.221 34.615 1.17 0.00 43.95 1.40
517 518 7.453439 AGGTTTTGGGCAAACTGTAGTATTAAT 59.547 33.333 0.00 0.00 43.95 1.40
518 519 8.741841 GGTTTTGGGCAAACTGTAGTATTAATA 58.258 33.333 0.00 0.00 43.95 0.98
519 520 9.563898 GTTTTGGGCAAACTGTAGTATTAATAC 57.436 33.333 16.44 16.44 41.58 1.89
520 521 9.523168 TTTTGGGCAAACTGTAGTATTAATACT 57.477 29.630 26.90 26.90 45.08 2.12
521 522 8.500753 TTGGGCAAACTGTAGTATTAATACTG 57.499 34.615 30.16 19.44 43.10 2.74
522 523 6.540914 TGGGCAAACTGTAGTATTAATACTGC 59.459 38.462 30.16 28.74 43.10 4.40
532 533 9.938280 TGTAGTATTAATACTGCAGTTTTCTGT 57.062 29.630 30.87 14.24 46.31 3.41
534 535 8.268850 AGTATTAATACTGCAGTTTTCTGTGG 57.731 34.615 27.06 0.00 41.77 4.17
535 536 7.148239 AGTATTAATACTGCAGTTTTCTGTGGC 60.148 37.037 27.06 11.69 41.77 5.01
542 543 3.781079 CAGTTTTCTGTGGCTGTCAAA 57.219 42.857 0.00 0.00 42.48 2.69
543 544 3.438360 CAGTTTTCTGTGGCTGTCAAAC 58.562 45.455 0.00 0.00 42.48 2.93
544 545 3.088532 AGTTTTCTGTGGCTGTCAAACA 58.911 40.909 0.00 0.00 0.00 2.83
545 546 4.966624 CAGTTTTCTGTGGCTGTCAAACAG 60.967 45.833 2.71 2.71 44.21 3.16
564 565 4.668576 CAGCTCGCTGTATTCTCAAAAA 57.331 40.909 10.65 0.00 39.10 1.94
565 566 4.398247 CAGCTCGCTGTATTCTCAAAAAC 58.602 43.478 10.65 0.00 39.10 2.43
566 567 4.153117 CAGCTCGCTGTATTCTCAAAAACT 59.847 41.667 10.65 0.00 39.10 2.66
567 568 4.153117 AGCTCGCTGTATTCTCAAAAACTG 59.847 41.667 0.00 0.00 0.00 3.16
568 569 4.083802 GCTCGCTGTATTCTCAAAAACTGT 60.084 41.667 0.00 0.00 0.00 3.55
569 570 5.560953 GCTCGCTGTATTCTCAAAAACTGTT 60.561 40.000 0.00 0.00 0.00 3.16
570 571 5.747565 TCGCTGTATTCTCAAAAACTGTTG 58.252 37.500 0.00 0.00 0.00 3.33
571 572 5.295787 TCGCTGTATTCTCAAAAACTGTTGT 59.704 36.000 0.00 0.00 0.00 3.32
572 573 6.480651 TCGCTGTATTCTCAAAAACTGTTGTA 59.519 34.615 0.00 0.00 0.00 2.41
573 574 7.172532 TCGCTGTATTCTCAAAAACTGTTGTAT 59.827 33.333 0.00 0.00 0.00 2.29
574 575 7.803189 CGCTGTATTCTCAAAAACTGTTGTATT 59.197 33.333 0.00 0.00 0.00 1.89
575 576 9.118236 GCTGTATTCTCAAAAACTGTTGTATTC 57.882 33.333 0.00 0.00 0.00 1.75
611 612 7.611213 AGAAAATACTGAGTTATCAAACGGG 57.389 36.000 0.00 0.00 40.73 5.28
612 613 6.598064 AGAAAATACTGAGTTATCAAACGGGG 59.402 38.462 0.00 0.00 40.73 5.73
613 614 2.109425 ACTGAGTTATCAAACGGGGC 57.891 50.000 0.00 0.00 40.73 5.80
614 615 1.339727 ACTGAGTTATCAAACGGGGCC 60.340 52.381 0.00 0.00 40.73 5.80
615 616 0.988832 TGAGTTATCAAACGGGGCCT 59.011 50.000 0.84 0.00 40.73 5.19
616 617 2.169769 CTGAGTTATCAAACGGGGCCTA 59.830 50.000 0.84 0.00 40.73 3.93
617 618 2.572556 TGAGTTATCAAACGGGGCCTAA 59.427 45.455 0.84 0.00 40.73 2.69
618 619 3.203716 GAGTTATCAAACGGGGCCTAAG 58.796 50.000 0.84 0.00 40.73 2.18
619 620 2.574824 AGTTATCAAACGGGGCCTAAGT 59.425 45.455 0.84 0.00 40.73 2.24
620 621 3.009805 AGTTATCAAACGGGGCCTAAGTT 59.990 43.478 0.84 5.08 40.73 2.66
621 622 2.124277 ATCAAACGGGGCCTAAGTTC 57.876 50.000 0.84 0.00 0.00 3.01
622 623 0.037160 TCAAACGGGGCCTAAGTTCC 59.963 55.000 0.84 0.00 0.00 3.62
626 627 0.912487 ACGGGGCCTAAGTTCCATCA 60.912 55.000 0.84 0.00 0.00 3.07
686 687 5.733620 ACATGTCTTGGAATCATTGCTTT 57.266 34.783 0.00 0.00 0.00 3.51
688 689 4.424061 TGTCTTGGAATCATTGCTTTCG 57.576 40.909 0.00 0.00 0.00 3.46
711 712 4.900635 ACGATTCATTTGTTATCAGCCC 57.099 40.909 0.00 0.00 0.00 5.19
763 768 5.724854 TCTGCCCTGTAACTAATTAAGACCT 59.275 40.000 0.00 0.00 0.00 3.85
764 769 5.741011 TGCCCTGTAACTAATTAAGACCTG 58.259 41.667 0.00 0.00 0.00 4.00
827 832 1.477923 CCTTTTGTTTGGTCCCGAGGA 60.478 52.381 0.00 0.00 0.00 3.71
874 879 8.856103 TCTTACAAAAGTTTTGGCTTATTAGCT 58.144 29.630 27.46 9.04 39.37 3.32
883 888 7.446625 AGTTTTGGCTTATTAGCTATCATCCTG 59.553 37.037 3.39 0.00 46.90 3.86
947 952 4.517285 CTGCCATTCTTTAGGTTGCTCTA 58.483 43.478 0.00 0.00 0.00 2.43
948 953 4.261801 TGCCATTCTTTAGGTTGCTCTAC 58.738 43.478 0.00 0.00 0.00 2.59
951 956 5.065346 GCCATTCTTTAGGTTGCTCTACTTC 59.935 44.000 0.00 0.00 0.00 3.01
1000 1005 6.335471 TCCACAAACAAGAGAGATAACGTA 57.665 37.500 0.00 0.00 0.00 3.57
1196 1201 2.410322 ATTGACCAGCCGCCTGACAA 62.410 55.000 0.00 1.73 41.77 3.18
1305 1310 1.156095 TGGACAGCCAGAGAGGTCA 59.844 57.895 0.00 0.00 39.92 4.02
1319 1324 1.302832 GGTCACACAGCTTCAGGGG 60.303 63.158 0.00 0.00 0.00 4.79
1584 1589 0.959553 TGTTGACAGAGGGAGACGAC 59.040 55.000 0.00 0.00 0.00 4.34
1839 1846 2.450476 GCATCTTGGGGTGAAGAACAT 58.550 47.619 0.00 0.00 35.60 2.71
2351 2685 1.678970 GGTGGGGTGCCTTTAGCTG 60.679 63.158 0.00 0.00 44.23 4.24
2428 2762 4.526970 AGTATTGGTCCAAGGTGCATAAG 58.473 43.478 10.72 0.00 0.00 1.73
2458 2792 5.279556 GGGTTCAGGGCTAGATAATAGTCAC 60.280 48.000 0.00 0.00 0.00 3.67
2555 2889 5.420725 ACTGCATCTTAGTGTGTATCCAA 57.579 39.130 0.00 0.00 0.00 3.53
2662 2997 7.351952 TGTATGAAGTAGGAGAGGCTTACTTA 58.648 38.462 8.84 0.00 45.92 2.24
2837 3172 6.041069 GCCAGTGTATCTACCAAGTAAGATCT 59.959 42.308 0.00 0.00 0.00 2.75
3265 3603 1.690893 TGGAGCATACCATCTCTCAGC 59.309 52.381 0.00 0.00 34.77 4.26
3273 3611 1.476085 ACCATCTCTCAGCGAACTCTG 59.524 52.381 0.00 0.00 35.46 3.35
3387 3725 2.710377 TGGTGACACCATGATGCTTAC 58.290 47.619 23.72 0.00 44.79 2.34
3407 3745 2.154462 CGTTTGAAGAAGGAGCCATGT 58.846 47.619 0.00 0.00 0.00 3.21
3416 3754 1.649321 AGGAGCCATGTGAAGTCTCA 58.351 50.000 0.00 0.00 0.00 3.27
3495 3833 8.618240 TTCATATTGGGTTTAGAGAACCTCTA 57.382 34.615 7.77 0.00 41.50 2.43
3499 3837 5.593679 TGGGTTTAGAGAACCTCTATTCG 57.406 43.478 7.77 0.00 41.87 3.34
3615 3953 1.068541 GCCCAAACCGACATTGAGAAC 60.069 52.381 0.00 0.00 0.00 3.01
3795 4133 8.276325 GCATTTCAAATACTAGTTATCCAGTCG 58.724 37.037 0.00 0.00 0.00 4.18
3868 4207 6.373495 GTCGGTTTATCCATGTAAAGGAAAGT 59.627 38.462 0.00 0.00 38.93 2.66
3941 4280 6.861144 TGATTGTCAAATCGATAAAATGCCA 58.139 32.000 0.00 0.00 44.47 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.077930 GCCTTTAGTCCCGGTTCCC 60.078 63.158 0.00 0.00 0.00 3.97
2 3 1.077930 GGCCTTTAGTCCCGGTTCC 60.078 63.158 0.00 0.00 0.00 3.62
3 4 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
4 5 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
8 9 1.197812 TCGTAAGGGCCTTTAGTCCC 58.802 55.000 26.29 5.03 42.94 4.46
9 10 2.625737 GTTCGTAAGGGCCTTTAGTCC 58.374 52.381 26.29 6.64 38.47 3.85
10 11 2.625737 GGTTCGTAAGGGCCTTTAGTC 58.374 52.381 26.29 14.62 38.47 2.59
11 12 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
12 13 1.648504 CGGTTCGTAAGGGCCTTTAG 58.351 55.000 26.29 18.30 38.47 1.85
13 14 0.249955 CCGGTTCGTAAGGGCCTTTA 59.750 55.000 26.29 2.60 38.47 1.85
14 15 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
15 16 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
16 17 3.396570 CCCGGTTCGTAAGGGCCT 61.397 66.667 0.00 0.00 38.51 5.19
17 18 3.393106 TCCCGGTTCGTAAGGGCC 61.393 66.667 0.00 0.00 44.70 5.80
18 19 2.125391 GTCCCGGTTCGTAAGGGC 60.125 66.667 0.00 0.00 44.70 5.19
19 20 0.035176 TTTGTCCCGGTTCGTAAGGG 59.965 55.000 0.00 0.00 46.40 3.95
20 21 1.802365 CTTTTGTCCCGGTTCGTAAGG 59.198 52.381 0.00 0.00 38.47 2.69
21 22 1.802365 CCTTTTGTCCCGGTTCGTAAG 59.198 52.381 0.00 0.00 0.00 2.34
22 23 1.881591 CCTTTTGTCCCGGTTCGTAA 58.118 50.000 0.00 0.00 0.00 3.18
23 24 0.603439 GCCTTTTGTCCCGGTTCGTA 60.603 55.000 0.00 0.00 0.00 3.43
24 25 1.895231 GCCTTTTGTCCCGGTTCGT 60.895 57.895 0.00 0.00 0.00 3.85
25 26 2.622962 GGCCTTTTGTCCCGGTTCG 61.623 63.158 0.00 0.00 0.00 3.95
26 27 2.622962 CGGCCTTTTGTCCCGGTTC 61.623 63.158 0.00 0.00 38.42 3.62
27 28 2.596338 CGGCCTTTTGTCCCGGTT 60.596 61.111 0.00 0.00 38.42 4.44
30 31 1.740332 AAAACCGGCCTTTTGTCCCG 61.740 55.000 0.00 0.00 41.60 5.14
31 32 0.032952 GAAAACCGGCCTTTTGTCCC 59.967 55.000 0.00 0.00 0.00 4.46
32 33 1.037493 AGAAAACCGGCCTTTTGTCC 58.963 50.000 0.00 0.00 0.00 4.02
33 34 2.882761 AGTAGAAAACCGGCCTTTTGTC 59.117 45.455 0.00 1.72 0.00 3.18
34 35 2.940158 AGTAGAAAACCGGCCTTTTGT 58.060 42.857 0.00 6.31 0.00 2.83
35 36 4.070009 ACTAGTAGAAAACCGGCCTTTTG 58.930 43.478 0.00 0.00 0.00 2.44
36 37 4.070009 CACTAGTAGAAAACCGGCCTTTT 58.930 43.478 0.00 0.93 0.00 2.27
37 38 3.325716 TCACTAGTAGAAAACCGGCCTTT 59.674 43.478 0.00 0.43 0.00 3.11
38 39 2.901839 TCACTAGTAGAAAACCGGCCTT 59.098 45.455 0.00 0.00 0.00 4.35
39 40 2.532843 TCACTAGTAGAAAACCGGCCT 58.467 47.619 0.00 0.00 0.00 5.19
40 41 3.195661 CATCACTAGTAGAAAACCGGCC 58.804 50.000 0.00 0.00 0.00 6.13
41 42 3.195661 CCATCACTAGTAGAAAACCGGC 58.804 50.000 0.00 0.00 0.00 6.13
42 43 3.195661 GCCATCACTAGTAGAAAACCGG 58.804 50.000 3.59 0.00 0.00 5.28
43 44 3.857052 TGCCATCACTAGTAGAAAACCG 58.143 45.455 3.59 0.00 0.00 4.44
44 45 5.246307 AGTTGCCATCACTAGTAGAAAACC 58.754 41.667 3.59 0.00 0.00 3.27
45 46 5.062308 CGAGTTGCCATCACTAGTAGAAAAC 59.938 44.000 3.59 0.00 0.00 2.43
46 47 5.168569 CGAGTTGCCATCACTAGTAGAAAA 58.831 41.667 3.59 0.00 0.00 2.29
47 48 4.381612 CCGAGTTGCCATCACTAGTAGAAA 60.382 45.833 3.59 0.00 0.00 2.52
48 49 3.130516 CCGAGTTGCCATCACTAGTAGAA 59.869 47.826 3.59 0.00 0.00 2.10
49 50 2.688446 CCGAGTTGCCATCACTAGTAGA 59.312 50.000 3.59 0.00 0.00 2.59
50 51 2.223829 CCCGAGTTGCCATCACTAGTAG 60.224 54.545 0.00 0.00 0.00 2.57
51 52 1.754803 CCCGAGTTGCCATCACTAGTA 59.245 52.381 0.00 0.00 0.00 1.82
52 53 0.537188 CCCGAGTTGCCATCACTAGT 59.463 55.000 0.00 0.00 0.00 2.57
53 54 0.537188 ACCCGAGTTGCCATCACTAG 59.463 55.000 0.00 0.00 0.00 2.57
54 55 1.855295 TACCCGAGTTGCCATCACTA 58.145 50.000 0.00 0.00 0.00 2.74
55 56 0.981183 TTACCCGAGTTGCCATCACT 59.019 50.000 0.00 0.00 0.00 3.41
56 57 1.816074 TTTACCCGAGTTGCCATCAC 58.184 50.000 0.00 0.00 0.00 3.06
57 58 2.570415 TTTTACCCGAGTTGCCATCA 57.430 45.000 0.00 0.00 0.00 3.07
58 59 3.078837 TCTTTTTACCCGAGTTGCCATC 58.921 45.455 0.00 0.00 0.00 3.51
59 60 3.081804 CTCTTTTTACCCGAGTTGCCAT 58.918 45.455 0.00 0.00 0.00 4.40
60 61 2.105134 TCTCTTTTTACCCGAGTTGCCA 59.895 45.455 0.00 0.00 0.00 4.92
61 62 2.742589 CTCTCTTTTTACCCGAGTTGCC 59.257 50.000 0.00 0.00 0.00 4.52
62 63 3.400255 ACTCTCTTTTTACCCGAGTTGC 58.600 45.455 0.00 0.00 31.36 4.17
64 65 3.813724 GCAACTCTCTTTTTACCCGAGTT 59.186 43.478 0.00 0.00 43.48 3.01
65 66 3.400255 GCAACTCTCTTTTTACCCGAGT 58.600 45.455 0.00 0.00 36.58 4.18
66 67 2.742589 GGCAACTCTCTTTTTACCCGAG 59.257 50.000 0.00 0.00 0.00 4.63
67 68 2.105134 TGGCAACTCTCTTTTTACCCGA 59.895 45.455 0.00 0.00 37.61 5.14
68 69 2.225727 GTGGCAACTCTCTTTTTACCCG 59.774 50.000 0.00 0.00 37.61 5.28
69 70 2.557056 GGTGGCAACTCTCTTTTTACCC 59.443 50.000 0.00 0.00 37.61 3.69
70 71 3.253432 CAGGTGGCAACTCTCTTTTTACC 59.747 47.826 0.00 0.00 37.61 2.85
71 72 3.304726 GCAGGTGGCAACTCTCTTTTTAC 60.305 47.826 0.00 0.00 43.97 2.01
72 73 2.884639 GCAGGTGGCAACTCTCTTTTTA 59.115 45.455 0.00 0.00 43.97 1.52
73 74 1.683385 GCAGGTGGCAACTCTCTTTTT 59.317 47.619 0.00 0.00 43.97 1.94
74 75 1.322442 GCAGGTGGCAACTCTCTTTT 58.678 50.000 0.00 0.00 43.97 2.27
75 76 3.027419 GCAGGTGGCAACTCTCTTT 57.973 52.632 0.00 0.00 43.97 2.52
76 77 4.809070 GCAGGTGGCAACTCTCTT 57.191 55.556 0.00 0.00 43.97 2.85
93 94 4.130118 CTGCCCCTAGTGTGCTTTATAAG 58.870 47.826 0.00 0.00 0.00 1.73
94 95 3.521937 ACTGCCCCTAGTGTGCTTTATAA 59.478 43.478 0.00 0.00 0.00 0.98
95 96 3.112263 ACTGCCCCTAGTGTGCTTTATA 58.888 45.455 0.00 0.00 0.00 0.98
96 97 1.916181 ACTGCCCCTAGTGTGCTTTAT 59.084 47.619 0.00 0.00 0.00 1.40
97 98 1.358152 ACTGCCCCTAGTGTGCTTTA 58.642 50.000 0.00 0.00 0.00 1.85
98 99 0.478507 AACTGCCCCTAGTGTGCTTT 59.521 50.000 0.00 0.00 0.00 3.51
99 100 0.250901 CAACTGCCCCTAGTGTGCTT 60.251 55.000 0.00 0.00 0.00 3.91
100 101 1.376466 CAACTGCCCCTAGTGTGCT 59.624 57.895 0.00 0.00 0.00 4.40
101 102 2.335712 GCAACTGCCCCTAGTGTGC 61.336 63.158 0.00 0.00 34.31 4.57
102 103 3.987404 GCAACTGCCCCTAGTGTG 58.013 61.111 0.00 0.00 34.31 3.82
117 118 5.870636 TGTGTTCTACAGTGCACATGGCA 62.871 47.826 21.04 5.54 42.10 4.92
118 119 1.197721 GTGTTCTACAGTGCACATGGC 59.802 52.381 21.04 2.87 45.13 4.40
119 120 2.493035 TGTGTTCTACAGTGCACATGG 58.507 47.619 21.04 10.59 37.00 3.66
122 123 2.493035 CCATGTGTTCTACAGTGCACA 58.507 47.619 21.04 3.46 43.80 4.57
123 124 1.197721 GCCATGTGTTCTACAGTGCAC 59.802 52.381 9.40 9.40 43.80 4.57
124 125 1.202746 TGCCATGTGTTCTACAGTGCA 60.203 47.619 0.00 0.00 43.80 4.57
125 126 1.522668 TGCCATGTGTTCTACAGTGC 58.477 50.000 0.00 0.00 43.80 4.40
126 127 3.141398 AGTTGCCATGTGTTCTACAGTG 58.859 45.455 0.00 0.00 43.80 3.66
127 128 3.492102 AGTTGCCATGTGTTCTACAGT 57.508 42.857 0.00 0.00 43.80 3.55
128 129 3.372206 GCTAGTTGCCATGTGTTCTACAG 59.628 47.826 0.00 0.00 38.07 2.74
129 130 3.244387 TGCTAGTTGCCATGTGTTCTACA 60.244 43.478 0.00 0.00 41.88 2.74
130 131 3.334691 TGCTAGTTGCCATGTGTTCTAC 58.665 45.455 0.00 0.00 42.00 2.59
131 132 3.599343 CTGCTAGTTGCCATGTGTTCTA 58.401 45.455 0.00 0.00 42.00 2.10
132 133 2.430465 CTGCTAGTTGCCATGTGTTCT 58.570 47.619 0.00 0.00 42.00 3.01
133 134 1.135575 GCTGCTAGTTGCCATGTGTTC 60.136 52.381 0.00 0.00 42.00 3.18
134 135 0.883833 GCTGCTAGTTGCCATGTGTT 59.116 50.000 0.00 0.00 42.00 3.32
135 136 0.037303 AGCTGCTAGTTGCCATGTGT 59.963 50.000 0.00 0.00 42.00 3.72
136 137 1.135489 CAAGCTGCTAGTTGCCATGTG 60.135 52.381 0.90 0.00 42.00 3.21
137 138 1.171308 CAAGCTGCTAGTTGCCATGT 58.829 50.000 0.90 0.00 42.00 3.21
138 139 0.454600 CCAAGCTGCTAGTTGCCATG 59.545 55.000 0.90 0.00 42.00 3.66
139 140 0.682209 CCCAAGCTGCTAGTTGCCAT 60.682 55.000 0.90 0.00 42.00 4.40
140 141 1.303561 CCCAAGCTGCTAGTTGCCA 60.304 57.895 0.90 0.00 42.00 4.92
141 142 1.303643 ACCCAAGCTGCTAGTTGCC 60.304 57.895 0.90 0.00 42.00 4.52
142 143 0.890996 ACACCCAAGCTGCTAGTTGC 60.891 55.000 0.90 0.00 43.25 4.17
143 144 0.877071 CACACCCAAGCTGCTAGTTG 59.123 55.000 0.90 0.00 0.00 3.16
144 145 0.250901 CCACACCCAAGCTGCTAGTT 60.251 55.000 0.90 0.00 0.00 2.24
145 146 1.376466 CCACACCCAAGCTGCTAGT 59.624 57.895 0.90 0.00 0.00 2.57
146 147 1.377725 CCCACACCCAAGCTGCTAG 60.378 63.158 0.90 0.00 0.00 3.42
147 148 1.841302 CTCCCACACCCAAGCTGCTA 61.841 60.000 0.90 0.00 0.00 3.49
148 149 3.177884 TCCCACACCCAAGCTGCT 61.178 61.111 0.00 0.00 0.00 4.24
149 150 2.674380 CTCCCACACCCAAGCTGC 60.674 66.667 0.00 0.00 0.00 5.25
150 151 1.002868 CTCTCCCACACCCAAGCTG 60.003 63.158 0.00 0.00 0.00 4.24
151 152 2.227036 CCTCTCCCACACCCAAGCT 61.227 63.158 0.00 0.00 0.00 3.74
152 153 2.190488 CTCCTCTCCCACACCCAAGC 62.190 65.000 0.00 0.00 0.00 4.01
153 154 0.545309 TCTCCTCTCCCACACCCAAG 60.545 60.000 0.00 0.00 0.00 3.61
154 155 0.836400 GTCTCCTCTCCCACACCCAA 60.836 60.000 0.00 0.00 0.00 4.12
155 156 1.229209 GTCTCCTCTCCCACACCCA 60.229 63.158 0.00 0.00 0.00 4.51
156 157 2.352032 CGTCTCCTCTCCCACACCC 61.352 68.421 0.00 0.00 0.00 4.61
157 158 2.352032 CCGTCTCCTCTCCCACACC 61.352 68.421 0.00 0.00 0.00 4.16
158 159 2.352032 CCCGTCTCCTCTCCCACAC 61.352 68.421 0.00 0.00 0.00 3.82
159 160 2.037367 CCCGTCTCCTCTCCCACA 59.963 66.667 0.00 0.00 0.00 4.17
160 161 3.462678 GCCCGTCTCCTCTCCCAC 61.463 72.222 0.00 0.00 0.00 4.61
163 164 3.827898 CACGCCCGTCTCCTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
164 165 3.063084 ACACGCCCGTCTCCTCTC 61.063 66.667 0.00 0.00 0.00 3.20
165 166 3.374402 CACACGCCCGTCTCCTCT 61.374 66.667 0.00 0.00 0.00 3.69
166 167 4.436998 CCACACGCCCGTCTCCTC 62.437 72.222 0.00 0.00 0.00 3.71
177 178 4.758251 TGCCATCTCGCCCACACG 62.758 66.667 0.00 0.00 0.00 4.49
178 179 1.315257 ATTTGCCATCTCGCCCACAC 61.315 55.000 0.00 0.00 0.00 3.82
179 180 1.001020 ATTTGCCATCTCGCCCACA 60.001 52.632 0.00 0.00 0.00 4.17
180 181 1.434696 CATTTGCCATCTCGCCCAC 59.565 57.895 0.00 0.00 0.00 4.61
181 182 2.417257 GCATTTGCCATCTCGCCCA 61.417 57.895 0.00 0.00 34.31 5.36
182 183 2.414594 GCATTTGCCATCTCGCCC 59.585 61.111 0.00 0.00 34.31 6.13
192 193 0.109132 GCTAGTGTGTGGGCATTTGC 60.109 55.000 0.00 0.00 41.14 3.68
193 194 0.527565 GGCTAGTGTGTGGGCATTTG 59.472 55.000 0.00 0.00 31.56 2.32
194 195 0.611896 GGGCTAGTGTGTGGGCATTT 60.612 55.000 0.00 0.00 33.14 2.32
195 196 1.000896 GGGCTAGTGTGTGGGCATT 60.001 57.895 0.00 0.00 33.14 3.56
196 197 1.500783 AAGGGCTAGTGTGTGGGCAT 61.501 55.000 0.00 0.00 33.14 4.40
197 198 2.153401 AAGGGCTAGTGTGTGGGCA 61.153 57.895 0.00 0.00 33.14 5.36
198 199 1.675641 CAAGGGCTAGTGTGTGGGC 60.676 63.158 0.00 0.00 0.00 5.36
199 200 0.606401 CACAAGGGCTAGTGTGTGGG 60.606 60.000 3.62 0.00 40.22 4.61
200 201 2.932663 CACAAGGGCTAGTGTGTGG 58.067 57.895 3.62 0.00 40.22 4.17
205 206 1.000506 ACGTACACACAAGGGCTAGTG 59.999 52.381 0.00 0.00 41.40 2.74
206 207 1.000506 CACGTACACACAAGGGCTAGT 59.999 52.381 0.00 0.00 0.00 2.57
207 208 1.000506 ACACGTACACACAAGGGCTAG 59.999 52.381 0.00 0.00 0.00 3.42
208 209 1.042229 ACACGTACACACAAGGGCTA 58.958 50.000 0.00 0.00 0.00 3.93
209 210 1.042229 TACACGTACACACAAGGGCT 58.958 50.000 0.00 0.00 0.00 5.19
210 211 1.868469 TTACACGTACACACAAGGGC 58.132 50.000 0.00 0.00 0.00 5.19
211 212 3.872771 ACTTTTACACGTACACACAAGGG 59.127 43.478 0.00 0.00 0.00 3.95
212 213 4.260456 CCACTTTTACACGTACACACAAGG 60.260 45.833 0.00 0.00 0.00 3.61
213 214 4.784079 GCCACTTTTACACGTACACACAAG 60.784 45.833 0.00 0.00 0.00 3.16
214 215 3.063725 GCCACTTTTACACGTACACACAA 59.936 43.478 0.00 0.00 0.00 3.33
215 216 2.608546 GCCACTTTTACACGTACACACA 59.391 45.455 0.00 0.00 0.00 3.72
216 217 2.347846 CGCCACTTTTACACGTACACAC 60.348 50.000 0.00 0.00 0.00 3.82
217 218 1.859703 CGCCACTTTTACACGTACACA 59.140 47.619 0.00 0.00 0.00 3.72
218 219 1.860326 ACGCCACTTTTACACGTACAC 59.140 47.619 0.00 0.00 34.79 2.90
219 220 1.859703 CACGCCACTTTTACACGTACA 59.140 47.619 0.00 0.00 34.79 2.90
220 221 1.860326 ACACGCCACTTTTACACGTAC 59.140 47.619 0.00 0.00 34.79 3.67
221 222 1.859703 CACACGCCACTTTTACACGTA 59.140 47.619 0.00 0.00 34.79 3.57
222 223 0.653636 CACACGCCACTTTTACACGT 59.346 50.000 0.00 0.00 37.47 4.49
223 224 0.041663 CCACACGCCACTTTTACACG 60.042 55.000 0.00 0.00 0.00 4.49
224 225 0.309612 CCCACACGCCACTTTTACAC 59.690 55.000 0.00 0.00 0.00 2.90
225 226 1.448922 GCCCACACGCCACTTTTACA 61.449 55.000 0.00 0.00 0.00 2.41
226 227 1.284715 GCCCACACGCCACTTTTAC 59.715 57.895 0.00 0.00 0.00 2.01
227 228 2.255172 CGCCCACACGCCACTTTTA 61.255 57.895 0.00 0.00 0.00 1.52
228 229 3.591835 CGCCCACACGCCACTTTT 61.592 61.111 0.00 0.00 0.00 2.27
229 230 4.555709 TCGCCCACACGCCACTTT 62.556 61.111 0.00 0.00 0.00 2.66
230 231 4.555709 TTCGCCCACACGCCACTT 62.556 61.111 0.00 0.00 0.00 3.16
236 237 3.716006 CAGCAGTTCGCCCACACG 61.716 66.667 0.00 0.00 44.04 4.49
237 238 1.891919 TTCAGCAGTTCGCCCACAC 60.892 57.895 0.00 0.00 44.04 3.82
238 239 1.891919 GTTCAGCAGTTCGCCCACA 60.892 57.895 0.00 0.00 44.04 4.17
239 240 2.946762 GTTCAGCAGTTCGCCCAC 59.053 61.111 0.00 0.00 44.04 4.61
240 241 2.664851 CGTTCAGCAGTTCGCCCA 60.665 61.111 0.00 0.00 44.04 5.36
251 252 2.203139 TGGTGTGTGGGCGTTCAG 60.203 61.111 0.00 0.00 0.00 3.02
252 253 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
253 254 3.660111 GCTGGTGTGTGGGCGTTC 61.660 66.667 0.00 0.00 0.00 3.95
258 259 4.351054 GAGGGGCTGGTGTGTGGG 62.351 72.222 0.00 0.00 0.00 4.61
259 260 4.351054 GGAGGGGCTGGTGTGTGG 62.351 72.222 0.00 0.00 0.00 4.17
260 261 3.252284 AGGAGGGGCTGGTGTGTG 61.252 66.667 0.00 0.00 0.00 3.82
261 262 3.252284 CAGGAGGGGCTGGTGTGT 61.252 66.667 0.00 0.00 0.00 3.72
262 263 3.252284 ACAGGAGGGGCTGGTGTG 61.252 66.667 0.00 0.00 0.00 3.82
263 264 3.252284 CACAGGAGGGGCTGGTGT 61.252 66.667 0.00 0.00 0.00 4.16
264 265 3.252284 ACACAGGAGGGGCTGGTG 61.252 66.667 0.00 0.00 0.00 4.17
265 266 3.252284 CACACAGGAGGGGCTGGT 61.252 66.667 0.00 0.00 0.00 4.00
266 267 4.039092 CCACACAGGAGGGGCTGG 62.039 72.222 0.00 0.00 41.22 4.85
267 268 3.252284 ACCACACAGGAGGGGCTG 61.252 66.667 0.00 0.00 41.22 4.85
268 269 3.252284 CACCACACAGGAGGGGCT 61.252 66.667 0.00 0.00 41.22 5.19
269 270 2.351924 TTTCACCACACAGGAGGGGC 62.352 60.000 0.00 0.00 41.22 5.80
270 271 0.537371 GTTTCACCACACAGGAGGGG 60.537 60.000 0.00 0.00 41.22 4.79
271 272 0.182537 TGTTTCACCACACAGGAGGG 59.817 55.000 0.00 0.00 41.22 4.30
272 273 1.597742 CTGTTTCACCACACAGGAGG 58.402 55.000 0.00 0.00 41.22 4.30
273 274 0.947244 GCTGTTTCACCACACAGGAG 59.053 55.000 1.72 0.00 40.77 3.69
274 275 0.465460 GGCTGTTTCACCACACAGGA 60.465 55.000 1.72 0.00 40.77 3.86
275 276 1.785041 CGGCTGTTTCACCACACAGG 61.785 60.000 1.72 0.00 40.77 4.00
276 277 1.095228 ACGGCTGTTTCACCACACAG 61.095 55.000 0.00 0.00 42.94 3.66
277 278 1.078072 ACGGCTGTTTCACCACACA 60.078 52.632 0.00 0.00 0.00 3.72
278 279 1.355210 CACGGCTGTTTCACCACAC 59.645 57.895 0.00 0.00 0.00 3.82
279 280 0.678366 AACACGGCTGTTTCACCACA 60.678 50.000 0.00 0.00 37.31 4.17
280 281 0.248458 CAACACGGCTGTTTCACCAC 60.248 55.000 0.00 0.00 38.66 4.16
281 282 1.380403 CCAACACGGCTGTTTCACCA 61.380 55.000 0.00 0.00 38.66 4.17
282 283 1.358759 CCAACACGGCTGTTTCACC 59.641 57.895 0.00 0.00 38.66 4.02
292 293 4.752879 ACCCGATCGCCAACACGG 62.753 66.667 10.32 6.17 44.16 4.94
293 294 3.487202 CACCCGATCGCCAACACG 61.487 66.667 10.32 0.00 0.00 4.49
294 295 1.669760 TTCACCCGATCGCCAACAC 60.670 57.895 10.32 0.00 0.00 3.32
295 296 1.669760 GTTCACCCGATCGCCAACA 60.670 57.895 10.32 0.00 0.00 3.33
296 297 2.736682 CGTTCACCCGATCGCCAAC 61.737 63.158 10.32 7.96 0.00 3.77
297 298 2.433491 CGTTCACCCGATCGCCAA 60.433 61.111 10.32 0.00 0.00 4.52
307 308 1.003112 TGGTATGTGGGCGTTCACC 60.003 57.895 7.58 0.00 36.87 4.02
308 309 1.024579 CCTGGTATGTGGGCGTTCAC 61.025 60.000 3.83 3.83 38.09 3.18
309 310 1.298340 CCTGGTATGTGGGCGTTCA 59.702 57.895 0.00 0.00 0.00 3.18
310 311 2.112815 GCCTGGTATGTGGGCGTTC 61.113 63.158 0.00 0.00 36.37 3.95
311 312 2.045340 GCCTGGTATGTGGGCGTT 60.045 61.111 0.00 0.00 36.37 4.84
312 313 4.109675 GGCCTGGTATGTGGGCGT 62.110 66.667 0.00 0.00 46.10 5.68
315 316 0.468029 GGATTGGCCTGGTATGTGGG 60.468 60.000 3.32 0.00 0.00 4.61
316 317 3.116091 GGATTGGCCTGGTATGTGG 57.884 57.895 3.32 0.00 0.00 4.17
328 329 1.754803 TCTAGTGCCACGTAGGATTGG 59.245 52.381 8.04 0.00 41.22 3.16
329 330 3.520290 TTCTAGTGCCACGTAGGATTG 57.480 47.619 8.04 0.00 41.22 2.67
330 331 3.259876 TGTTTCTAGTGCCACGTAGGATT 59.740 43.478 8.04 0.00 41.22 3.01
331 332 2.829720 TGTTTCTAGTGCCACGTAGGAT 59.170 45.455 8.04 0.00 41.22 3.24
332 333 2.241160 TGTTTCTAGTGCCACGTAGGA 58.759 47.619 8.04 0.00 41.22 2.94
333 334 2.736144 TGTTTCTAGTGCCACGTAGG 57.264 50.000 0.00 0.00 41.84 3.18
334 335 2.348666 GCATGTTTCTAGTGCCACGTAG 59.651 50.000 0.00 0.00 32.88 3.51
335 336 2.343101 GCATGTTTCTAGTGCCACGTA 58.657 47.619 0.00 0.00 32.88 3.57
336 337 1.156736 GCATGTTTCTAGTGCCACGT 58.843 50.000 0.00 0.00 32.88 4.49
337 338 3.975992 GCATGTTTCTAGTGCCACG 57.024 52.632 0.00 0.00 32.88 4.94
341 342 4.666237 GAATCTTGGCATGTTTCTAGTGC 58.334 43.478 13.85 0.00 38.12 4.40
342 343 4.393062 ACGAATCTTGGCATGTTTCTAGTG 59.607 41.667 17.10 8.13 0.00 2.74
343 344 4.393062 CACGAATCTTGGCATGTTTCTAGT 59.607 41.667 17.10 9.33 0.00 2.57
344 345 4.728882 GCACGAATCTTGGCATGTTTCTAG 60.729 45.833 17.10 12.11 0.00 2.43
345 346 3.126858 GCACGAATCTTGGCATGTTTCTA 59.873 43.478 17.10 0.00 0.00 2.10
346 347 2.095059 GCACGAATCTTGGCATGTTTCT 60.095 45.455 17.10 6.52 0.00 2.52
347 348 2.253603 GCACGAATCTTGGCATGTTTC 58.746 47.619 11.97 11.97 0.00 2.78
348 349 1.401409 CGCACGAATCTTGGCATGTTT 60.401 47.619 0.00 0.00 0.00 2.83
349 350 0.168788 CGCACGAATCTTGGCATGTT 59.831 50.000 0.00 0.00 0.00 2.71
350 351 1.796151 CGCACGAATCTTGGCATGT 59.204 52.632 0.00 0.00 0.00 3.21
351 352 1.584483 GCGCACGAATCTTGGCATG 60.584 57.895 0.30 0.00 0.00 4.06
352 353 1.709147 GAGCGCACGAATCTTGGCAT 61.709 55.000 11.47 0.00 0.00 4.40
353 354 2.358615 AGCGCACGAATCTTGGCA 60.359 55.556 11.47 0.00 0.00 4.92
354 355 1.709147 ATGAGCGCACGAATCTTGGC 61.709 55.000 11.47 0.00 0.00 4.52
355 356 0.027194 CATGAGCGCACGAATCTTGG 59.973 55.000 11.47 0.00 0.00 3.61
356 357 1.001624 TCATGAGCGCACGAATCTTG 58.998 50.000 11.47 6.66 0.00 3.02
357 358 1.284657 CTCATGAGCGCACGAATCTT 58.715 50.000 11.47 0.00 0.00 2.40
358 359 1.150567 GCTCATGAGCGCACGAATCT 61.151 55.000 30.64 0.00 45.29 2.40
359 360 1.275066 GCTCATGAGCGCACGAATC 59.725 57.895 30.64 3.71 45.29 2.52
360 361 3.403277 GCTCATGAGCGCACGAAT 58.597 55.556 30.64 0.00 45.29 3.34
369 370 3.490793 ATCCGCGTCCGCTCATGAG 62.491 63.158 18.84 18.84 39.32 2.90
370 371 3.484742 GATCCGCGTCCGCTCATGA 62.485 63.158 4.92 0.00 39.32 3.07
371 372 3.032609 GATCCGCGTCCGCTCATG 61.033 66.667 4.92 0.00 39.32 3.07
372 373 4.286320 GGATCCGCGTCCGCTCAT 62.286 66.667 4.92 1.17 39.32 2.90
389 390 3.049674 ATCTTGCCCACACGCGTG 61.050 61.111 35.99 35.99 43.21 5.34
390 391 3.049674 CATCTTGCCCACACGCGT 61.050 61.111 5.58 5.58 0.00 6.01
391 392 4.465512 GCATCTTGCCCACACGCG 62.466 66.667 3.53 3.53 37.42 6.01
392 393 2.419057 TTTGCATCTTGCCCACACGC 62.419 55.000 0.00 0.00 44.23 5.34
393 394 0.664166 GTTTGCATCTTGCCCACACG 60.664 55.000 0.00 0.00 44.23 4.49
394 395 0.664166 CGTTTGCATCTTGCCCACAC 60.664 55.000 0.00 0.00 44.23 3.82
395 396 1.659233 CGTTTGCATCTTGCCCACA 59.341 52.632 0.00 0.00 44.23 4.17
396 397 1.734117 GCGTTTGCATCTTGCCCAC 60.734 57.895 0.00 0.00 44.23 4.61
397 398 2.650196 GCGTTTGCATCTTGCCCA 59.350 55.556 0.00 0.00 44.23 5.36
398 399 2.125952 GGCGTTTGCATCTTGCCC 60.126 61.111 8.18 0.00 44.23 5.36
399 400 2.125952 GGGCGTTTGCATCTTGCC 60.126 61.111 10.35 10.35 44.23 4.52
400 401 1.734117 GTGGGCGTTTGCATCTTGC 60.734 57.895 0.00 0.00 45.35 4.01
401 402 0.664166 GTGTGGGCGTTTGCATCTTG 60.664 55.000 0.00 0.00 45.35 3.02
402 403 1.659794 GTGTGGGCGTTTGCATCTT 59.340 52.632 0.00 0.00 45.35 2.40
403 404 2.616330 CGTGTGGGCGTTTGCATCT 61.616 57.895 0.00 0.00 45.35 2.90
404 405 2.126888 CGTGTGGGCGTTTGCATC 60.127 61.111 0.00 0.00 45.35 3.91
405 406 2.904866 ACGTGTGGGCGTTTGCAT 60.905 55.556 0.00 0.00 43.04 3.96
406 407 3.882013 CACGTGTGGGCGTTTGCA 61.882 61.111 7.58 0.00 43.83 4.08
407 408 3.883180 ACACGTGTGGGCGTTTGC 61.883 61.111 22.71 0.00 43.83 3.68
408 409 2.024022 CACACGTGTGGGCGTTTG 59.976 61.111 35.65 12.14 43.83 2.93
420 421 2.312348 GAAAATGTTAACGCCCACACG 58.688 47.619 0.26 0.00 39.50 4.49
421 422 2.287129 ACGAAAATGTTAACGCCCACAC 60.287 45.455 0.26 0.00 0.00 3.82
422 423 1.948145 ACGAAAATGTTAACGCCCACA 59.052 42.857 0.26 0.00 0.00 4.17
423 424 2.691984 ACGAAAATGTTAACGCCCAC 57.308 45.000 0.26 0.00 0.00 4.61
424 425 3.712091 AAACGAAAATGTTAACGCCCA 57.288 38.095 0.26 0.00 0.00 5.36
425 426 6.507890 TTTTAAACGAAAATGTTAACGCCC 57.492 33.333 0.26 0.00 31.90 6.13
447 448 6.620877 AAAAAGAACCTCCAACCTCTTTTT 57.379 33.333 13.06 13.06 46.02 1.94
472 473 9.981114 CAAAACCTTGGTATTTTCTCTGTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
473 474 8.417884 CCAAAACCTTGGTATTTTCTCTGTTAA 58.582 33.333 0.00 0.00 46.25 2.01
474 475 7.947282 CCAAAACCTTGGTATTTTCTCTGTTA 58.053 34.615 0.00 0.00 46.25 2.41
475 476 6.816136 CCAAAACCTTGGTATTTTCTCTGTT 58.184 36.000 0.00 0.00 46.25 3.16
476 477 6.405278 CCAAAACCTTGGTATTTTCTCTGT 57.595 37.500 0.00 0.00 46.25 3.41
494 495 9.523168 AGTATTAATACTACAGTTTGCCCAAAA 57.477 29.630 23.68 0.00 41.55 2.44
495 496 8.952278 CAGTATTAATACTACAGTTTGCCCAAA 58.048 33.333 24.29 0.00 41.44 3.28
496 497 7.066525 GCAGTATTAATACTACAGTTTGCCCAA 59.933 37.037 24.29 0.00 41.44 4.12
497 498 6.540914 GCAGTATTAATACTACAGTTTGCCCA 59.459 38.462 24.29 0.00 41.44 5.36
498 499 6.540914 TGCAGTATTAATACTACAGTTTGCCC 59.459 38.462 24.29 4.38 41.44 5.36
499 500 7.548196 TGCAGTATTAATACTACAGTTTGCC 57.452 36.000 24.29 10.34 41.44 4.52
506 507 9.938280 ACAGAAAACTGCAGTATTAATACTACA 57.062 29.630 24.29 22.96 41.44 2.74
508 509 9.378551 CCACAGAAAACTGCAGTATTAATACTA 57.621 33.333 24.29 11.77 41.44 1.82
509 510 7.148239 GCCACAGAAAACTGCAGTATTAATACT 60.148 37.037 22.01 20.27 44.03 2.12
510 511 6.967199 GCCACAGAAAACTGCAGTATTAATAC 59.033 38.462 22.01 16.44 0.00 1.89
511 512 6.884295 AGCCACAGAAAACTGCAGTATTAATA 59.116 34.615 22.01 0.00 0.00 0.98
512 513 5.711976 AGCCACAGAAAACTGCAGTATTAAT 59.288 36.000 22.01 0.00 0.00 1.40
513 514 5.048782 CAGCCACAGAAAACTGCAGTATTAA 60.049 40.000 22.01 0.00 0.00 1.40
514 515 4.455533 CAGCCACAGAAAACTGCAGTATTA 59.544 41.667 22.01 0.00 0.00 0.98
515 516 3.254166 CAGCCACAGAAAACTGCAGTATT 59.746 43.478 22.01 13.58 0.00 1.89
516 517 2.816087 CAGCCACAGAAAACTGCAGTAT 59.184 45.455 22.01 12.61 0.00 2.12
517 518 2.221169 CAGCCACAGAAAACTGCAGTA 58.779 47.619 22.01 0.00 0.00 2.74
518 519 1.027357 CAGCCACAGAAAACTGCAGT 58.973 50.000 15.25 15.25 0.00 4.40
519 520 1.002033 GACAGCCACAGAAAACTGCAG 60.002 52.381 13.48 13.48 33.35 4.41
520 521 1.024271 GACAGCCACAGAAAACTGCA 58.976 50.000 0.00 0.00 33.35 4.41
521 522 1.024271 TGACAGCCACAGAAAACTGC 58.976 50.000 0.00 0.00 33.35 4.40
522 523 3.119531 TGTTTGACAGCCACAGAAAACTG 60.120 43.478 0.00 0.00 36.22 3.16
523 524 3.088532 TGTTTGACAGCCACAGAAAACT 58.911 40.909 0.00 0.00 0.00 2.66
524 525 3.438360 CTGTTTGACAGCCACAGAAAAC 58.562 45.455 5.87 0.00 39.62 2.43
525 526 3.781079 CTGTTTGACAGCCACAGAAAA 57.219 42.857 5.87 0.00 39.62 2.29
544 545 4.153117 CAGTTTTTGAGAATACAGCGAGCT 59.847 41.667 0.00 0.00 0.00 4.09
545 546 4.083802 ACAGTTTTTGAGAATACAGCGAGC 60.084 41.667 0.00 0.00 0.00 5.03
546 547 5.597813 ACAGTTTTTGAGAATACAGCGAG 57.402 39.130 0.00 0.00 0.00 5.03
547 548 5.295787 ACAACAGTTTTTGAGAATACAGCGA 59.704 36.000 0.00 0.00 0.00 4.93
548 549 5.510671 ACAACAGTTTTTGAGAATACAGCG 58.489 37.500 0.00 0.00 0.00 5.18
549 550 9.118236 GAATACAACAGTTTTTGAGAATACAGC 57.882 33.333 0.00 0.00 0.00 4.40
585 586 9.326413 CCCGTTTGATAACTCAGTATTTTCTAT 57.674 33.333 0.00 0.00 31.68 1.98
586 587 7.767198 CCCCGTTTGATAACTCAGTATTTTCTA 59.233 37.037 0.00 0.00 31.68 2.10
587 588 6.598064 CCCCGTTTGATAACTCAGTATTTTCT 59.402 38.462 0.00 0.00 31.68 2.52
588 589 6.677187 GCCCCGTTTGATAACTCAGTATTTTC 60.677 42.308 0.00 0.00 31.68 2.29
589 590 5.124936 GCCCCGTTTGATAACTCAGTATTTT 59.875 40.000 0.00 0.00 31.68 1.82
590 591 4.638865 GCCCCGTTTGATAACTCAGTATTT 59.361 41.667 0.00 0.00 31.68 1.40
591 592 4.196971 GCCCCGTTTGATAACTCAGTATT 58.803 43.478 0.00 0.00 31.68 1.89
592 593 3.433173 GGCCCCGTTTGATAACTCAGTAT 60.433 47.826 0.00 0.00 31.68 2.12
593 594 2.093341 GGCCCCGTTTGATAACTCAGTA 60.093 50.000 0.00 0.00 31.68 2.74
594 595 1.339727 GGCCCCGTTTGATAACTCAGT 60.340 52.381 0.00 0.00 31.68 3.41
595 596 1.065418 AGGCCCCGTTTGATAACTCAG 60.065 52.381 0.00 0.00 31.68 3.35
596 597 0.988832 AGGCCCCGTTTGATAACTCA 59.011 50.000 0.00 0.00 31.89 3.41
597 598 2.994186 TAGGCCCCGTTTGATAACTC 57.006 50.000 0.00 0.00 31.89 3.01
598 599 2.574824 ACTTAGGCCCCGTTTGATAACT 59.425 45.455 0.00 0.00 31.89 2.24
599 600 2.995283 ACTTAGGCCCCGTTTGATAAC 58.005 47.619 0.00 0.00 0.00 1.89
600 601 3.613030 GAACTTAGGCCCCGTTTGATAA 58.387 45.455 0.00 0.00 0.00 1.75
601 602 2.092807 GGAACTTAGGCCCCGTTTGATA 60.093 50.000 0.00 0.00 0.00 2.15
602 603 1.340697 GGAACTTAGGCCCCGTTTGAT 60.341 52.381 0.00 0.00 0.00 2.57
603 604 0.037160 GGAACTTAGGCCCCGTTTGA 59.963 55.000 0.00 0.00 0.00 2.69
604 605 0.250989 TGGAACTTAGGCCCCGTTTG 60.251 55.000 0.00 0.00 0.00 2.93
605 606 0.702316 ATGGAACTTAGGCCCCGTTT 59.298 50.000 0.00 0.00 0.00 3.60
606 607 0.255033 GATGGAACTTAGGCCCCGTT 59.745 55.000 0.00 0.00 0.00 4.44
607 608 0.912487 TGATGGAACTTAGGCCCCGT 60.912 55.000 0.00 0.00 0.00 5.28
608 609 0.474184 ATGATGGAACTTAGGCCCCG 59.526 55.000 0.00 0.00 0.00 5.73
609 610 1.986882 CATGATGGAACTTAGGCCCC 58.013 55.000 0.00 0.00 0.00 5.80
610 611 1.133668 AGCATGATGGAACTTAGGCCC 60.134 52.381 0.00 0.00 0.00 5.80
611 612 2.355010 AGCATGATGGAACTTAGGCC 57.645 50.000 0.00 0.00 0.00 5.19
612 613 3.561725 GTGTAGCATGATGGAACTTAGGC 59.438 47.826 0.00 0.00 0.00 3.93
613 614 4.769688 TGTGTAGCATGATGGAACTTAGG 58.230 43.478 0.00 0.00 0.00 2.69
614 615 4.813161 CCTGTGTAGCATGATGGAACTTAG 59.187 45.833 0.00 0.00 0.00 2.18
615 616 4.469586 TCCTGTGTAGCATGATGGAACTTA 59.530 41.667 0.00 0.00 0.00 2.24
616 617 3.264193 TCCTGTGTAGCATGATGGAACTT 59.736 43.478 0.00 0.00 0.00 2.66
617 618 2.840038 TCCTGTGTAGCATGATGGAACT 59.160 45.455 0.00 0.00 0.00 3.01
618 619 3.266510 TCCTGTGTAGCATGATGGAAC 57.733 47.619 0.00 0.00 0.00 3.62
619 620 4.080413 TCAATCCTGTGTAGCATGATGGAA 60.080 41.667 0.00 0.00 31.85 3.53
620 621 3.455543 TCAATCCTGTGTAGCATGATGGA 59.544 43.478 0.00 0.00 33.65 3.41
621 622 3.812262 TCAATCCTGTGTAGCATGATGG 58.188 45.455 0.00 0.00 33.65 3.51
622 623 6.709397 AGTAATCAATCCTGTGTAGCATGATG 59.291 38.462 0.00 0.00 33.65 3.07
626 627 6.239217 TGAGTAATCAATCCTGTGTAGCAT 57.761 37.500 0.00 0.00 0.00 3.79
646 647 3.266541 TGTTGCTTTGCGTAACATGAG 57.733 42.857 0.00 0.00 42.20 2.90
686 687 5.233476 GGCTGATAACAAATGAATCGTACGA 59.767 40.000 21.93 21.93 0.00 3.43
688 689 5.527582 AGGGCTGATAACAAATGAATCGTAC 59.472 40.000 0.00 0.00 0.00 3.67
728 730 3.931907 ACAGGGCAGATATACAGCAAA 57.068 42.857 0.00 0.00 32.56 3.68
744 746 5.817816 CAGCCAGGTCTTAATTAGTTACAGG 59.182 44.000 0.00 0.00 0.00 4.00
778 783 6.553100 AGTGAACCTATGGTGAAATTTTTGGA 59.447 34.615 0.00 0.00 35.34 3.53
780 785 7.661040 AGAGTGAACCTATGGTGAAATTTTTG 58.339 34.615 0.00 0.00 35.34 2.44
783 788 5.946377 GGAGAGTGAACCTATGGTGAAATTT 59.054 40.000 0.00 0.00 35.34 1.82
784 789 5.501156 GGAGAGTGAACCTATGGTGAAATT 58.499 41.667 0.00 0.00 35.34 1.82
795 800 3.953542 AACAAAAGGGAGAGTGAACCT 57.046 42.857 0.00 0.00 35.78 3.50
827 832 6.894339 AGAAATCCAGGACAAATTAAACGT 57.106 33.333 0.00 0.00 0.00 3.99
829 834 9.974980 TTGTAAGAAATCCAGGACAAATTAAAC 57.025 29.630 0.00 0.00 0.00 2.01
947 952 4.642429 GTTGGTGATCTACTTGGTGAAGT 58.358 43.478 0.00 0.00 44.90 3.01
948 953 3.679980 CGTTGGTGATCTACTTGGTGAAG 59.320 47.826 0.00 0.00 35.07 3.02
951 956 1.732259 GCGTTGGTGATCTACTTGGTG 59.268 52.381 0.00 0.00 0.00 4.17
1196 1201 0.969409 GGCCCAAAGCTTGATCTGCT 60.969 55.000 0.00 7.76 43.05 4.24
1301 1306 1.302832 CCCCTGAAGCTGTGTGACC 60.303 63.158 0.00 0.00 0.00 4.02
1305 1310 0.550914 TGAAACCCCTGAAGCTGTGT 59.449 50.000 0.00 0.00 0.00 3.72
1319 1324 4.439289 GGCTGAGGCACTTATCAATGAAAC 60.439 45.833 0.00 0.00 41.55 2.78
1584 1589 3.548818 CCTTGAGCTGTTTCTTGGAAACG 60.549 47.826 15.34 11.93 33.05 3.60
2351 2685 5.048713 ACAGCAAACTAGCAATTGTAAGGAC 60.049 40.000 7.40 0.00 36.85 3.85
2428 2762 2.679082 TCTAGCCCTGAACCCATAGAC 58.321 52.381 0.00 0.00 0.00 2.59
2458 2792 4.866486 TGTCTCATGTTCTTCACATCATCG 59.134 41.667 0.00 0.00 43.17 3.84
2502 2836 4.710375 TCTTTAGGTGTGGAGGTAGATCAC 59.290 45.833 0.00 0.00 0.00 3.06
2635 2969 5.346181 AAGCCTCTCCTACTTCATACAAC 57.654 43.478 0.00 0.00 0.00 3.32
2662 2997 7.451566 ACCAAGCTTTTATTAATGAGTTGGTCT 59.548 33.333 0.00 7.40 40.89 3.85
2795 3130 0.955919 GGCTGCTGACCACCAACTAC 60.956 60.000 0.00 0.00 0.00 2.73
2837 3172 1.677633 TCTCGATGGACAGTCGGCA 60.678 57.895 0.00 0.00 39.45 5.69
3265 3603 3.310774 CCTTCACCATTATGCAGAGTTCG 59.689 47.826 0.00 0.00 0.00 3.95
3273 3611 5.417580 TGTTTAGGTTCCTTCACCATTATGC 59.582 40.000 0.00 0.00 39.62 3.14
3385 3723 3.244422 ACATGGCTCCTTCTTCAAACGTA 60.244 43.478 0.00 0.00 0.00 3.57
3387 3725 2.095567 CACATGGCTCCTTCTTCAAACG 60.096 50.000 0.00 0.00 0.00 3.60
3407 3745 4.142609 ACTGCAGAGTTTTGAGACTTCA 57.857 40.909 23.35 0.00 0.00 3.02
3416 3754 8.292448 CACATAGAAATGTAACTGCAGAGTTTT 58.708 33.333 23.35 11.98 44.70 2.43
3456 3794 6.496565 ACCCAATATGAAATCACCAAACTGAA 59.503 34.615 0.00 0.00 0.00 3.02
3495 3833 5.762825 AACATCAATATGCTCAAGCGAAT 57.237 34.783 0.00 0.00 45.83 3.34
3499 3837 6.259608 AGACTGTAACATCAATATGCTCAAGC 59.740 38.462 0.00 0.00 36.50 4.01
3615 3953 3.074412 ACTTCGTAGCCAAGTTCCAATG 58.926 45.455 0.00 0.00 29.29 2.82
3845 4184 6.753107 ACTTTCCTTTACATGGATAAACCG 57.247 37.500 0.00 0.00 42.61 4.44
3881 4220 1.689813 TCCAACGCTACTCAACTTCCA 59.310 47.619 0.00 0.00 0.00 3.53
4291 4630 4.724279 ACCAACAGATAAAGGGTGAAGT 57.276 40.909 0.00 0.00 0.00 3.01
4292 4631 6.405278 AAAACCAACAGATAAAGGGTGAAG 57.595 37.500 0.00 0.00 30.91 3.02
4293 4632 6.155393 ACAAAAACCAACAGATAAAGGGTGAA 59.845 34.615 0.00 0.00 30.91 3.18
4294 4633 5.659079 ACAAAAACCAACAGATAAAGGGTGA 59.341 36.000 0.00 0.00 30.91 4.02
4295 4634 5.912892 ACAAAAACCAACAGATAAAGGGTG 58.087 37.500 0.00 0.00 30.91 4.61
4386 4996 4.377635 CCCACACAGTAAACGGTTAATTCG 60.378 45.833 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.