Multiple sequence alignment - TraesCS2D01G590300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G590300 chr2D 100.000 3019 0 0 1 3019 646450449 646447431 0.000000e+00 5576.0
1 TraesCS2D01G590300 chr2D 86.188 1296 160 9 658 1950 646434753 646436032 0.000000e+00 1384.0
2 TraesCS2D01G590300 chr2D 78.125 96 16 4 2842 2936 638323315 638323224 4.200000e-04 56.5
3 TraesCS2D01G590300 chr2B 94.371 2203 95 8 572 2763 788872842 788875026 0.000000e+00 3354.0
4 TraesCS2D01G590300 chr2B 82.019 1129 165 25 555 1665 788998680 788999788 0.000000e+00 926.0
5 TraesCS2D01G590300 chr2B 88.333 540 44 8 1139 1673 789019311 789019836 5.490000e-177 630.0
6 TraesCS2D01G590300 chr2B 85.882 510 58 9 1684 2188 789042723 789043223 5.730000e-147 531.0
7 TraesCS2D01G590300 chr2B 96.250 240 9 0 2780 3019 788875331 788875570 7.840000e-106 394.0
8 TraesCS2D01G590300 chr2B 84.706 170 25 1 88 257 556207541 556207373 5.180000e-38 169.0
9 TraesCS2D01G590300 chr2A 85.736 1935 231 31 508 2426 773271004 773269099 0.000000e+00 2002.0
10 TraesCS2D01G590300 chr2A 88.235 255 24 4 4 258 459363811 459363563 1.760000e-77 300.0
11 TraesCS2D01G590300 chr2A 87.549 257 26 6 4 258 459471769 459471517 2.940000e-75 292.0
12 TraesCS2D01G590300 chr2A 85.490 255 33 4 4 258 459524595 459524345 2.310000e-66 263.0
13 TraesCS2D01G590300 chr2A 100.000 45 0 0 393 437 773271072 773271028 1.930000e-12 84.2
14 TraesCS2D01G590300 chr6D 89.474 209 18 2 4 212 19315056 19315260 8.300000e-66 261.0
15 TraesCS2D01G590300 chr6B 82.625 259 27 8 4 258 622752947 622752703 2.360000e-51 213.0
16 TraesCS2D01G590300 chr5A 80.833 120 16 7 37 151 2366811 2366928 1.490000e-13 87.9
17 TraesCS2D01G590300 chr4D 79.464 112 19 3 59 167 36587874 36587984 3.230000e-10 76.8
18 TraesCS2D01G590300 chr3B 73.106 264 40 23 36 273 670169803 670169545 6.990000e-07 65.8
19 TraesCS2D01G590300 chr1B 76.744 129 13 10 37 151 8632262 8632137 4.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G590300 chr2D 646447431 646450449 3018 True 5576.0 5576 100.0000 1 3019 1 chr2D.!!$R2 3018
1 TraesCS2D01G590300 chr2D 646434753 646436032 1279 False 1384.0 1384 86.1880 658 1950 1 chr2D.!!$F1 1292
2 TraesCS2D01G590300 chr2B 788872842 788875570 2728 False 1874.0 3354 95.3105 572 3019 2 chr2B.!!$F4 2447
3 TraesCS2D01G590300 chr2B 788998680 788999788 1108 False 926.0 926 82.0190 555 1665 1 chr2B.!!$F1 1110
4 TraesCS2D01G590300 chr2B 789019311 789019836 525 False 630.0 630 88.3330 1139 1673 1 chr2B.!!$F2 534
5 TraesCS2D01G590300 chr2B 789042723 789043223 500 False 531.0 531 85.8820 1684 2188 1 chr2B.!!$F3 504
6 TraesCS2D01G590300 chr2A 773269099 773271072 1973 True 1043.1 2002 92.8680 393 2426 2 chr2A.!!$R4 2033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.028242 CAAACGCACGCAACCAAGTA 59.972 50.0 0.00 0.0 0.00 2.24 F
470 471 0.162082 TATTTCGTGACGCGTTGTGC 59.838 50.0 15.53 0.0 42.13 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 1971 1.519408 TTACCGCCTTCAGCAAACTC 58.481 50.0 0.0 0.0 44.04 3.01 R
2335 2376 0.309302 TTTGCACGGGACACATTTCG 59.691 50.0 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.673626 ACAAAGTACATTTTTCATCTTATGCG 57.326 30.769 0.00 0.00 0.00 4.73
36 37 7.754924 ACAAAGTACATTTTTCATCTTATGCGG 59.245 33.333 0.00 0.00 0.00 5.69
37 38 7.624360 AAGTACATTTTTCATCTTATGCGGA 57.376 32.000 0.00 0.00 0.00 5.54
38 39 7.251704 AGTACATTTTTCATCTTATGCGGAG 57.748 36.000 0.00 0.00 0.00 4.63
39 40 7.047891 AGTACATTTTTCATCTTATGCGGAGA 58.952 34.615 0.00 0.00 0.00 3.71
40 41 6.369059 ACATTTTTCATCTTATGCGGAGAG 57.631 37.500 0.00 0.00 0.00 3.20
41 42 6.115446 ACATTTTTCATCTTATGCGGAGAGA 58.885 36.000 0.00 0.00 0.00 3.10
42 43 6.259608 ACATTTTTCATCTTATGCGGAGAGAG 59.740 38.462 0.00 0.00 0.00 3.20
43 44 5.598416 TTTTCATCTTATGCGGAGAGAGA 57.402 39.130 0.00 0.00 0.00 3.10
44 45 4.844998 TTCATCTTATGCGGAGAGAGAG 57.155 45.455 0.00 0.00 0.00 3.20
45 46 4.092116 TCATCTTATGCGGAGAGAGAGA 57.908 45.455 0.00 0.00 0.00 3.10
46 47 4.071423 TCATCTTATGCGGAGAGAGAGAG 58.929 47.826 0.00 0.00 0.00 3.20
47 48 3.847671 TCTTATGCGGAGAGAGAGAGA 57.152 47.619 0.00 0.00 0.00 3.10
48 49 3.738982 TCTTATGCGGAGAGAGAGAGAG 58.261 50.000 0.00 0.00 0.00 3.20
49 50 3.389656 TCTTATGCGGAGAGAGAGAGAGA 59.610 47.826 0.00 0.00 0.00 3.10
50 51 2.260844 ATGCGGAGAGAGAGAGAGAG 57.739 55.000 0.00 0.00 0.00 3.20
51 52 0.180171 TGCGGAGAGAGAGAGAGAGG 59.820 60.000 0.00 0.00 0.00 3.69
52 53 0.535102 GCGGAGAGAGAGAGAGAGGG 60.535 65.000 0.00 0.00 0.00 4.30
53 54 1.128200 CGGAGAGAGAGAGAGAGGGA 58.872 60.000 0.00 0.00 0.00 4.20
54 55 1.070758 CGGAGAGAGAGAGAGAGGGAG 59.929 61.905 0.00 0.00 0.00 4.30
55 56 2.408565 GGAGAGAGAGAGAGAGGGAGA 58.591 57.143 0.00 0.00 0.00 3.71
56 57 2.777692 GGAGAGAGAGAGAGAGGGAGAA 59.222 54.545 0.00 0.00 0.00 2.87
57 58 3.202151 GGAGAGAGAGAGAGAGGGAGAAA 59.798 52.174 0.00 0.00 0.00 2.52
58 59 4.325030 GGAGAGAGAGAGAGAGGGAGAAAA 60.325 50.000 0.00 0.00 0.00 2.29
59 60 4.600062 AGAGAGAGAGAGAGGGAGAAAAC 58.400 47.826 0.00 0.00 0.00 2.43
60 61 3.352648 AGAGAGAGAGAGGGAGAAAACG 58.647 50.000 0.00 0.00 0.00 3.60
61 62 1.822371 AGAGAGAGAGGGAGAAAACGC 59.178 52.381 0.00 0.00 0.00 4.84
62 63 0.899019 AGAGAGAGGGAGAAAACGCC 59.101 55.000 0.00 0.00 0.00 5.68
63 64 0.899019 GAGAGAGGGAGAAAACGCCT 59.101 55.000 0.00 0.00 0.00 5.52
64 65 1.276705 GAGAGAGGGAGAAAACGCCTT 59.723 52.381 0.00 0.00 0.00 4.35
65 66 2.496470 GAGAGAGGGAGAAAACGCCTTA 59.504 50.000 0.00 0.00 0.00 2.69
66 67 2.498078 AGAGAGGGAGAAAACGCCTTAG 59.502 50.000 0.00 0.00 0.00 2.18
67 68 2.496470 GAGAGGGAGAAAACGCCTTAGA 59.504 50.000 0.00 0.00 0.00 2.10
68 69 2.904434 AGAGGGAGAAAACGCCTTAGAA 59.096 45.455 0.00 0.00 0.00 2.10
69 70 3.519913 AGAGGGAGAAAACGCCTTAGAAT 59.480 43.478 0.00 0.00 0.00 2.40
70 71 4.019231 AGAGGGAGAAAACGCCTTAGAATT 60.019 41.667 0.00 0.00 0.00 2.17
71 72 4.010349 AGGGAGAAAACGCCTTAGAATTG 58.990 43.478 0.00 0.00 0.00 2.32
72 73 4.007659 GGGAGAAAACGCCTTAGAATTGA 58.992 43.478 0.00 0.00 0.00 2.57
73 74 4.457949 GGGAGAAAACGCCTTAGAATTGAA 59.542 41.667 0.00 0.00 0.00 2.69
74 75 5.125578 GGGAGAAAACGCCTTAGAATTGAAT 59.874 40.000 0.00 0.00 0.00 2.57
75 76 6.317893 GGGAGAAAACGCCTTAGAATTGAATA 59.682 38.462 0.00 0.00 0.00 1.75
76 77 7.187480 GGAGAAAACGCCTTAGAATTGAATAC 58.813 38.462 0.00 0.00 0.00 1.89
77 78 7.148306 GGAGAAAACGCCTTAGAATTGAATACA 60.148 37.037 0.00 0.00 0.00 2.29
78 79 8.281212 AGAAAACGCCTTAGAATTGAATACAT 57.719 30.769 0.00 0.00 0.00 2.29
79 80 8.739972 AGAAAACGCCTTAGAATTGAATACATT 58.260 29.630 0.00 0.00 0.00 2.71
80 81 8.911247 AAAACGCCTTAGAATTGAATACATTC 57.089 30.769 0.00 0.00 37.31 2.67
81 82 7.624360 AACGCCTTAGAATTGAATACATTCA 57.376 32.000 0.45 0.45 44.42 2.57
93 94 6.364945 TGAATACATTCAAACACGTTGTGA 57.635 33.333 3.61 0.00 43.26 3.58
94 95 6.964908 TGAATACATTCAAACACGTTGTGAT 58.035 32.000 3.61 0.00 43.26 3.06
95 96 7.421599 TGAATACATTCAAACACGTTGTGATT 58.578 30.769 3.61 0.00 43.26 2.57
96 97 8.560374 TGAATACATTCAAACACGTTGTGATTA 58.440 29.630 3.61 0.00 43.26 1.75
97 98 9.554724 GAATACATTCAAACACGTTGTGATTAT 57.445 29.630 3.61 0.00 38.47 1.28
98 99 8.894409 ATACATTCAAACACGTTGTGATTATG 57.106 30.769 3.61 3.16 38.47 1.90
99 100 6.734137 ACATTCAAACACGTTGTGATTATGT 58.266 32.000 3.61 3.73 38.47 2.29
100 101 6.636447 ACATTCAAACACGTTGTGATTATGTG 59.364 34.615 3.61 0.00 38.47 3.21
101 102 5.993106 TCAAACACGTTGTGATTATGTGA 57.007 34.783 3.61 0.00 38.47 3.58
102 103 5.984627 TCAAACACGTTGTGATTATGTGAG 58.015 37.500 3.61 0.00 38.47 3.51
103 104 4.404507 AACACGTTGTGATTATGTGAGC 57.595 40.909 3.61 0.00 36.96 4.26
104 105 3.398406 ACACGTTGTGATTATGTGAGCA 58.602 40.909 3.61 0.00 36.96 4.26
105 106 3.186409 ACACGTTGTGATTATGTGAGCAC 59.814 43.478 3.61 0.00 36.96 4.40
106 107 2.742053 ACGTTGTGATTATGTGAGCACC 59.258 45.455 0.00 0.00 0.00 5.01
107 108 2.222796 CGTTGTGATTATGTGAGCACCG 60.223 50.000 0.00 0.00 0.00 4.94
108 109 3.000041 GTTGTGATTATGTGAGCACCGA 59.000 45.455 0.00 0.00 0.00 4.69
109 110 2.892374 TGTGATTATGTGAGCACCGAG 58.108 47.619 0.00 0.00 0.00 4.63
110 111 2.495669 TGTGATTATGTGAGCACCGAGA 59.504 45.455 0.00 0.00 0.00 4.04
111 112 2.860735 GTGATTATGTGAGCACCGAGAC 59.139 50.000 0.00 0.00 0.00 3.36
112 113 2.159099 TGATTATGTGAGCACCGAGACC 60.159 50.000 0.00 0.00 0.00 3.85
113 114 1.262417 TTATGTGAGCACCGAGACCA 58.738 50.000 0.00 0.00 0.00 4.02
114 115 0.530744 TATGTGAGCACCGAGACCAC 59.469 55.000 0.00 0.00 0.00 4.16
115 116 2.048127 GTGAGCACCGAGACCACC 60.048 66.667 0.00 0.00 0.00 4.61
116 117 3.680786 TGAGCACCGAGACCACCG 61.681 66.667 0.00 0.00 0.00 4.94
117 118 3.681835 GAGCACCGAGACCACCGT 61.682 66.667 0.00 0.00 0.00 4.83
118 119 3.222354 GAGCACCGAGACCACCGTT 62.222 63.158 0.00 0.00 0.00 4.44
119 120 1.870055 GAGCACCGAGACCACCGTTA 61.870 60.000 0.00 0.00 0.00 3.18
120 121 1.005867 GCACCGAGACCACCGTTAA 60.006 57.895 0.00 0.00 0.00 2.01
121 122 0.600782 GCACCGAGACCACCGTTAAA 60.601 55.000 0.00 0.00 0.00 1.52
122 123 1.425412 CACCGAGACCACCGTTAAAG 58.575 55.000 0.00 0.00 0.00 1.85
123 124 1.000060 CACCGAGACCACCGTTAAAGA 60.000 52.381 0.00 0.00 0.00 2.52
124 125 1.271656 ACCGAGACCACCGTTAAAGAG 59.728 52.381 0.00 0.00 0.00 2.85
125 126 1.403780 CCGAGACCACCGTTAAAGAGG 60.404 57.143 0.00 0.00 0.00 3.69
126 127 1.403780 CGAGACCACCGTTAAAGAGGG 60.404 57.143 5.24 2.03 39.25 4.30
130 131 4.687464 ACCGTTAAAGAGGGTGCG 57.313 55.556 0.00 0.00 44.58 5.34
131 132 2.051941 ACCGTTAAAGAGGGTGCGA 58.948 52.632 0.00 0.00 44.58 5.10
132 133 0.393820 ACCGTTAAAGAGGGTGCGAA 59.606 50.000 0.00 0.00 44.58 4.70
133 134 1.076332 CCGTTAAAGAGGGTGCGAAG 58.924 55.000 0.00 0.00 0.00 3.79
134 135 1.076332 CGTTAAAGAGGGTGCGAAGG 58.924 55.000 0.00 0.00 0.00 3.46
135 136 1.337447 CGTTAAAGAGGGTGCGAAGGA 60.337 52.381 0.00 0.00 0.00 3.36
136 137 2.347731 GTTAAAGAGGGTGCGAAGGAG 58.652 52.381 0.00 0.00 0.00 3.69
137 138 0.902531 TAAAGAGGGTGCGAAGGAGG 59.097 55.000 0.00 0.00 0.00 4.30
138 139 0.836400 AAAGAGGGTGCGAAGGAGGA 60.836 55.000 0.00 0.00 0.00 3.71
139 140 0.618968 AAGAGGGTGCGAAGGAGGAT 60.619 55.000 0.00 0.00 0.00 3.24
140 141 0.261991 AGAGGGTGCGAAGGAGGATA 59.738 55.000 0.00 0.00 0.00 2.59
141 142 1.120530 GAGGGTGCGAAGGAGGATAA 58.879 55.000 0.00 0.00 0.00 1.75
142 143 1.069358 GAGGGTGCGAAGGAGGATAAG 59.931 57.143 0.00 0.00 0.00 1.73
143 144 0.533085 GGGTGCGAAGGAGGATAAGC 60.533 60.000 0.00 0.00 0.00 3.09
144 145 0.876342 GGTGCGAAGGAGGATAAGCG 60.876 60.000 0.00 0.00 0.00 4.68
145 146 0.876342 GTGCGAAGGAGGATAAGCGG 60.876 60.000 0.00 0.00 0.00 5.52
146 147 1.956678 GCGAAGGAGGATAAGCGGC 60.957 63.158 0.00 0.00 0.00 6.53
147 148 1.441729 CGAAGGAGGATAAGCGGCA 59.558 57.895 1.45 0.00 0.00 5.69
148 149 0.179084 CGAAGGAGGATAAGCGGCAA 60.179 55.000 1.45 0.00 0.00 4.52
149 150 1.300481 GAAGGAGGATAAGCGGCAAC 58.700 55.000 1.45 0.00 0.00 4.17
150 151 0.618458 AAGGAGGATAAGCGGCAACA 59.382 50.000 1.45 0.00 0.00 3.33
151 152 0.179000 AGGAGGATAAGCGGCAACAG 59.821 55.000 1.45 0.00 0.00 3.16
152 153 0.178068 GGAGGATAAGCGGCAACAGA 59.822 55.000 1.45 0.00 0.00 3.41
153 154 1.202698 GGAGGATAAGCGGCAACAGAT 60.203 52.381 1.45 0.00 0.00 2.90
154 155 2.037251 GGAGGATAAGCGGCAACAGATA 59.963 50.000 1.45 0.00 0.00 1.98
155 156 3.307059 GGAGGATAAGCGGCAACAGATAT 60.307 47.826 1.45 0.00 0.00 1.63
156 157 3.668447 AGGATAAGCGGCAACAGATATG 58.332 45.455 1.45 0.00 0.00 1.78
157 158 2.744202 GGATAAGCGGCAACAGATATGG 59.256 50.000 1.45 0.00 0.00 2.74
158 159 2.254546 TAAGCGGCAACAGATATGGG 57.745 50.000 1.45 0.00 0.00 4.00
159 160 0.255890 AAGCGGCAACAGATATGGGT 59.744 50.000 1.45 0.00 0.00 4.51
160 161 0.255890 AGCGGCAACAGATATGGGTT 59.744 50.000 1.45 0.00 0.00 4.11
161 162 0.381801 GCGGCAACAGATATGGGTTG 59.618 55.000 10.36 10.36 45.44 3.77
167 168 4.036567 CAACAGATATGGGTTGCATGTG 57.963 45.455 0.00 0.00 38.08 3.21
168 169 2.658285 ACAGATATGGGTTGCATGTGG 58.342 47.619 0.00 0.00 0.00 4.17
169 170 2.241941 ACAGATATGGGTTGCATGTGGA 59.758 45.455 0.00 0.00 0.00 4.02
170 171 2.620115 CAGATATGGGTTGCATGTGGAC 59.380 50.000 0.00 0.00 0.00 4.02
171 172 2.241941 AGATATGGGTTGCATGTGGACA 59.758 45.455 0.00 0.00 0.00 4.02
172 173 2.824689 TATGGGTTGCATGTGGACAT 57.175 45.000 0.00 0.00 36.96 3.06
181 182 2.205022 CATGTGGACATGTTGGGTCT 57.795 50.000 11.01 0.00 46.40 3.85
182 183 2.517959 CATGTGGACATGTTGGGTCTT 58.482 47.619 11.01 0.00 46.40 3.01
183 184 2.270352 TGTGGACATGTTGGGTCTTC 57.730 50.000 0.00 0.00 35.61 2.87
184 185 1.492599 TGTGGACATGTTGGGTCTTCA 59.507 47.619 0.00 0.00 35.61 3.02
185 186 2.154462 GTGGACATGTTGGGTCTTCAG 58.846 52.381 0.00 0.00 35.61 3.02
186 187 1.774254 TGGACATGTTGGGTCTTCAGT 59.226 47.619 0.00 0.00 35.61 3.41
187 188 2.174639 TGGACATGTTGGGTCTTCAGTT 59.825 45.455 0.00 0.00 35.61 3.16
188 189 3.392947 TGGACATGTTGGGTCTTCAGTTA 59.607 43.478 0.00 0.00 35.61 2.24
189 190 4.042809 TGGACATGTTGGGTCTTCAGTTAT 59.957 41.667 0.00 0.00 35.61 1.89
190 191 4.396166 GGACATGTTGGGTCTTCAGTTATG 59.604 45.833 0.00 0.00 35.61 1.90
191 192 4.335416 ACATGTTGGGTCTTCAGTTATGG 58.665 43.478 0.00 0.00 0.00 2.74
192 193 4.202567 ACATGTTGGGTCTTCAGTTATGGT 60.203 41.667 0.00 0.00 0.00 3.55
193 194 4.447138 TGTTGGGTCTTCAGTTATGGTT 57.553 40.909 0.00 0.00 0.00 3.67
194 195 4.798882 TGTTGGGTCTTCAGTTATGGTTT 58.201 39.130 0.00 0.00 0.00 3.27
195 196 5.205056 TGTTGGGTCTTCAGTTATGGTTTT 58.795 37.500 0.00 0.00 0.00 2.43
196 197 5.659079 TGTTGGGTCTTCAGTTATGGTTTTT 59.341 36.000 0.00 0.00 0.00 1.94
197 198 5.782893 TGGGTCTTCAGTTATGGTTTTTG 57.217 39.130 0.00 0.00 0.00 2.44
198 199 5.205056 TGGGTCTTCAGTTATGGTTTTTGT 58.795 37.500 0.00 0.00 0.00 2.83
199 200 5.068460 TGGGTCTTCAGTTATGGTTTTTGTG 59.932 40.000 0.00 0.00 0.00 3.33
200 201 5.068591 GGGTCTTCAGTTATGGTTTTTGTGT 59.931 40.000 0.00 0.00 0.00 3.72
201 202 6.263617 GGGTCTTCAGTTATGGTTTTTGTGTA 59.736 38.462 0.00 0.00 0.00 2.90
202 203 7.360361 GGTCTTCAGTTATGGTTTTTGTGTAG 58.640 38.462 0.00 0.00 0.00 2.74
203 204 7.227910 GGTCTTCAGTTATGGTTTTTGTGTAGA 59.772 37.037 0.00 0.00 0.00 2.59
204 205 8.283291 GTCTTCAGTTATGGTTTTTGTGTAGAG 58.717 37.037 0.00 0.00 0.00 2.43
205 206 8.208224 TCTTCAGTTATGGTTTTTGTGTAGAGA 58.792 33.333 0.00 0.00 0.00 3.10
206 207 7.724305 TCAGTTATGGTTTTTGTGTAGAGAC 57.276 36.000 0.00 0.00 0.00 3.36
207 208 6.422701 TCAGTTATGGTTTTTGTGTAGAGACG 59.577 38.462 0.00 0.00 0.00 4.18
208 209 6.202188 CAGTTATGGTTTTTGTGTAGAGACGT 59.798 38.462 0.00 0.00 0.00 4.34
209 210 6.202188 AGTTATGGTTTTTGTGTAGAGACGTG 59.798 38.462 0.00 0.00 0.00 4.49
210 211 3.864243 TGGTTTTTGTGTAGAGACGTGT 58.136 40.909 0.00 0.00 0.00 4.49
211 212 3.619483 TGGTTTTTGTGTAGAGACGTGTG 59.381 43.478 0.00 0.00 0.00 3.82
212 213 3.001939 GGTTTTTGTGTAGAGACGTGTGG 59.998 47.826 0.00 0.00 0.00 4.17
213 214 2.519377 TTTGTGTAGAGACGTGTGGG 57.481 50.000 0.00 0.00 0.00 4.61
214 215 1.694844 TTGTGTAGAGACGTGTGGGA 58.305 50.000 0.00 0.00 0.00 4.37
215 216 1.919240 TGTGTAGAGACGTGTGGGAT 58.081 50.000 0.00 0.00 0.00 3.85
216 217 2.244695 TGTGTAGAGACGTGTGGGATT 58.755 47.619 0.00 0.00 0.00 3.01
217 218 2.631062 TGTGTAGAGACGTGTGGGATTT 59.369 45.455 0.00 0.00 0.00 2.17
218 219 3.070446 TGTGTAGAGACGTGTGGGATTTT 59.930 43.478 0.00 0.00 0.00 1.82
219 220 4.062991 GTGTAGAGACGTGTGGGATTTTT 58.937 43.478 0.00 0.00 0.00 1.94
238 239 4.799419 TTTTGTTACCTCGTTACAGTGC 57.201 40.909 0.00 0.00 0.00 4.40
239 240 3.455990 TTGTTACCTCGTTACAGTGCA 57.544 42.857 0.00 0.00 0.00 4.57
240 241 2.746269 TGTTACCTCGTTACAGTGCAC 58.254 47.619 9.40 9.40 0.00 4.57
241 242 1.717645 GTTACCTCGTTACAGTGCACG 59.282 52.381 12.01 9.15 37.77 5.34
242 243 0.241749 TACCTCGTTACAGTGCACGG 59.758 55.000 15.82 15.82 37.02 4.94
243 244 1.736645 CCTCGTTACAGTGCACGGG 60.737 63.158 21.15 15.16 37.02 5.28
244 245 2.356553 TCGTTACAGTGCACGGGC 60.357 61.111 21.15 0.34 37.02 6.13
245 246 2.357034 CGTTACAGTGCACGGGCT 60.357 61.111 21.15 3.64 41.91 5.19
246 247 2.380410 CGTTACAGTGCACGGGCTC 61.380 63.158 21.15 7.64 41.91 4.70
247 248 1.004918 GTTACAGTGCACGGGCTCT 60.005 57.895 21.15 10.63 44.21 4.09
248 249 0.602905 GTTACAGTGCACGGGCTCTT 60.603 55.000 21.15 6.57 41.64 2.85
249 250 0.107831 TTACAGTGCACGGGCTCTTT 59.892 50.000 21.15 8.70 41.64 2.52
250 251 0.107831 TACAGTGCACGGGCTCTTTT 59.892 50.000 21.15 4.66 41.64 2.27
251 252 1.283793 CAGTGCACGGGCTCTTTTG 59.716 57.895 12.35 0.00 41.64 2.44
252 253 2.050077 GTGCACGGGCTCTTTTGC 60.050 61.111 12.74 0.00 41.91 3.68
253 254 2.203337 TGCACGGGCTCTTTTGCT 60.203 55.556 12.74 0.00 41.91 3.91
254 255 1.072332 TGCACGGGCTCTTTTGCTA 59.928 52.632 12.74 0.00 41.91 3.49
255 256 0.955428 TGCACGGGCTCTTTTGCTAG 60.955 55.000 12.74 0.00 41.91 3.42
256 257 0.955919 GCACGGGCTCTTTTGCTAGT 60.956 55.000 0.00 0.00 36.96 2.57
257 258 1.079503 CACGGGCTCTTTTGCTAGTC 58.920 55.000 0.00 0.00 0.00 2.59
258 259 0.389948 ACGGGCTCTTTTGCTAGTCG 60.390 55.000 0.00 0.00 0.00 4.18
259 260 0.108804 CGGGCTCTTTTGCTAGTCGA 60.109 55.000 0.00 0.00 0.00 4.20
260 261 1.646189 GGGCTCTTTTGCTAGTCGAG 58.354 55.000 0.00 0.00 0.00 4.04
261 262 1.204941 GGGCTCTTTTGCTAGTCGAGA 59.795 52.381 0.00 0.00 0.00 4.04
262 263 2.159028 GGGCTCTTTTGCTAGTCGAGAT 60.159 50.000 0.00 0.00 0.00 2.75
263 264 3.068307 GGGCTCTTTTGCTAGTCGAGATA 59.932 47.826 0.00 0.00 0.00 1.98
264 265 4.441634 GGGCTCTTTTGCTAGTCGAGATAA 60.442 45.833 0.00 0.00 0.00 1.75
265 266 5.109903 GGCTCTTTTGCTAGTCGAGATAAA 58.890 41.667 0.00 0.00 0.00 1.40
266 267 5.581085 GGCTCTTTTGCTAGTCGAGATAAAA 59.419 40.000 0.00 0.00 0.00 1.52
267 268 6.092259 GGCTCTTTTGCTAGTCGAGATAAAAA 59.908 38.462 0.00 0.00 0.00 1.94
268 269 7.176741 GCTCTTTTGCTAGTCGAGATAAAAAG 58.823 38.462 11.30 11.30 35.27 2.27
269 270 7.063544 GCTCTTTTGCTAGTCGAGATAAAAAGA 59.936 37.037 16.05 16.05 37.79 2.52
270 271 8.827177 TCTTTTGCTAGTCGAGATAAAAAGAA 57.173 30.769 15.22 5.28 37.51 2.52
271 272 9.268268 TCTTTTGCTAGTCGAGATAAAAAGAAA 57.732 29.630 15.22 1.64 37.51 2.52
274 275 7.451281 TGCTAGTCGAGATAAAAAGAAATCG 57.549 36.000 0.00 0.00 0.00 3.34
275 276 7.255569 TGCTAGTCGAGATAAAAAGAAATCGA 58.744 34.615 0.00 0.00 36.90 3.59
276 277 7.432545 TGCTAGTCGAGATAAAAAGAAATCGAG 59.567 37.037 0.00 0.00 39.57 4.04
277 278 7.644551 GCTAGTCGAGATAAAAAGAAATCGAGA 59.355 37.037 0.00 0.00 39.57 4.04
278 279 7.743520 AGTCGAGATAAAAAGAAATCGAGAC 57.256 36.000 0.00 0.00 39.57 3.36
279 280 7.540299 AGTCGAGATAAAAAGAAATCGAGACT 58.460 34.615 0.00 0.00 39.57 3.24
280 281 7.698970 AGTCGAGATAAAAAGAAATCGAGACTC 59.301 37.037 0.00 0.00 38.30 3.36
281 282 6.973474 TCGAGATAAAAAGAAATCGAGACTCC 59.027 38.462 0.00 0.00 34.57 3.85
282 283 6.975772 CGAGATAAAAAGAAATCGAGACTCCT 59.024 38.462 0.00 0.00 32.13 3.69
283 284 7.043722 CGAGATAAAAAGAAATCGAGACTCCTG 60.044 40.741 0.00 0.00 32.13 3.86
284 285 6.536941 AGATAAAAAGAAATCGAGACTCCTGC 59.463 38.462 0.00 0.00 0.00 4.85
285 286 2.285827 AAGAAATCGAGACTCCTGCG 57.714 50.000 0.00 0.00 0.00 5.18
286 287 1.464734 AGAAATCGAGACTCCTGCGA 58.535 50.000 0.00 0.00 38.51 5.10
287 288 1.133407 AGAAATCGAGACTCCTGCGAC 59.867 52.381 0.00 0.00 36.83 5.19
288 289 0.888619 AAATCGAGACTCCTGCGACA 59.111 50.000 0.00 0.00 36.83 4.35
289 290 0.171455 AATCGAGACTCCTGCGACAC 59.829 55.000 0.00 0.00 36.83 3.67
290 291 1.983196 ATCGAGACTCCTGCGACACG 61.983 60.000 0.00 0.00 36.83 4.49
301 302 2.717190 CGACACGCACAAACGCAC 60.717 61.111 0.00 0.00 36.19 5.34
302 303 2.717190 GACACGCACAAACGCACG 60.717 61.111 0.00 0.00 36.19 5.34
303 304 4.879686 ACACGCACAAACGCACGC 62.880 61.111 0.00 0.00 36.19 5.34
304 305 4.877882 CACGCACAAACGCACGCA 62.878 61.111 0.00 0.00 36.19 5.24
305 306 4.167359 ACGCACAAACGCACGCAA 62.167 55.556 0.00 0.00 36.19 4.85
306 307 3.667486 CGCACAAACGCACGCAAC 61.667 61.111 0.00 0.00 0.00 4.17
307 308 3.319316 GCACAAACGCACGCAACC 61.319 61.111 0.00 0.00 0.00 3.77
308 309 2.101185 CACAAACGCACGCAACCA 59.899 55.556 0.00 0.00 0.00 3.67
309 310 1.515088 CACAAACGCACGCAACCAA 60.515 52.632 0.00 0.00 0.00 3.67
310 311 1.226547 ACAAACGCACGCAACCAAG 60.227 52.632 0.00 0.00 0.00 3.61
311 312 1.226547 CAAACGCACGCAACCAAGT 60.227 52.632 0.00 0.00 0.00 3.16
312 313 0.028242 CAAACGCACGCAACCAAGTA 59.972 50.000 0.00 0.00 0.00 2.24
313 314 0.948678 AAACGCACGCAACCAAGTAT 59.051 45.000 0.00 0.00 0.00 2.12
314 315 0.948678 AACGCACGCAACCAAGTATT 59.051 45.000 0.00 0.00 0.00 1.89
336 337 2.301577 GGACTGATCCGTCTCTTTGG 57.698 55.000 15.73 0.00 34.48 3.28
337 338 1.550976 GGACTGATCCGTCTCTTTGGT 59.449 52.381 15.73 0.00 34.48 3.67
338 339 2.028020 GGACTGATCCGTCTCTTTGGTT 60.028 50.000 15.73 0.00 34.48 3.67
339 340 3.557264 GGACTGATCCGTCTCTTTGGTTT 60.557 47.826 15.73 0.00 34.48 3.27
340 341 3.665190 ACTGATCCGTCTCTTTGGTTTC 58.335 45.455 0.00 0.00 0.00 2.78
341 342 3.071023 ACTGATCCGTCTCTTTGGTTTCA 59.929 43.478 0.00 0.00 0.00 2.69
342 343 4.256920 CTGATCCGTCTCTTTGGTTTCAT 58.743 43.478 0.00 0.00 0.00 2.57
343 344 4.253685 TGATCCGTCTCTTTGGTTTCATC 58.746 43.478 0.00 0.00 0.00 2.92
344 345 2.683968 TCCGTCTCTTTGGTTTCATCG 58.316 47.619 0.00 0.00 0.00 3.84
345 346 2.297880 TCCGTCTCTTTGGTTTCATCGA 59.702 45.455 0.00 0.00 0.00 3.59
346 347 3.064207 CCGTCTCTTTGGTTTCATCGAA 58.936 45.455 0.00 0.00 0.00 3.71
347 348 3.684788 CCGTCTCTTTGGTTTCATCGAAT 59.315 43.478 0.00 0.00 0.00 3.34
348 349 4.201724 CCGTCTCTTTGGTTTCATCGAATC 60.202 45.833 0.00 0.00 0.00 2.52
349 350 4.627467 CGTCTCTTTGGTTTCATCGAATCT 59.373 41.667 0.00 0.00 0.00 2.40
350 351 5.120830 CGTCTCTTTGGTTTCATCGAATCTT 59.879 40.000 0.00 0.00 0.00 2.40
351 352 6.538444 GTCTCTTTGGTTTCATCGAATCTTC 58.462 40.000 0.00 0.00 0.00 2.87
352 353 6.370166 GTCTCTTTGGTTTCATCGAATCTTCT 59.630 38.462 0.00 0.00 0.00 2.85
353 354 6.936900 TCTCTTTGGTTTCATCGAATCTTCTT 59.063 34.615 0.00 0.00 0.00 2.52
354 355 7.445402 TCTCTTTGGTTTCATCGAATCTTCTTT 59.555 33.333 0.00 0.00 0.00 2.52
355 356 7.940850 TCTTTGGTTTCATCGAATCTTCTTTT 58.059 30.769 0.00 0.00 0.00 2.27
356 357 8.413229 TCTTTGGTTTCATCGAATCTTCTTTTT 58.587 29.630 0.00 0.00 0.00 1.94
357 358 8.574196 TTTGGTTTCATCGAATCTTCTTTTTC 57.426 30.769 0.00 0.00 0.00 2.29
358 359 7.510549 TGGTTTCATCGAATCTTCTTTTTCT 57.489 32.000 0.00 0.00 0.00 2.52
359 360 7.940850 TGGTTTCATCGAATCTTCTTTTTCTT 58.059 30.769 0.00 0.00 0.00 2.52
360 361 8.413229 TGGTTTCATCGAATCTTCTTTTTCTTT 58.587 29.630 0.00 0.00 0.00 2.52
361 362 9.249457 GGTTTCATCGAATCTTCTTTTTCTTTT 57.751 29.630 0.00 0.00 0.00 2.27
363 364 9.463443 TTTCATCGAATCTTCTTTTTCTTTTCC 57.537 29.630 0.00 0.00 0.00 3.13
364 365 8.396272 TCATCGAATCTTCTTTTTCTTTTCCT 57.604 30.769 0.00 0.00 0.00 3.36
365 366 8.850156 TCATCGAATCTTCTTTTTCTTTTCCTT 58.150 29.630 0.00 0.00 0.00 3.36
366 367 9.468532 CATCGAATCTTCTTTTTCTTTTCCTTT 57.531 29.630 0.00 0.00 0.00 3.11
367 368 8.856490 TCGAATCTTCTTTTTCTTTTCCTTTG 57.144 30.769 0.00 0.00 0.00 2.77
368 369 7.920682 TCGAATCTTCTTTTTCTTTTCCTTTGG 59.079 33.333 0.00 0.00 0.00 3.28
369 370 7.706607 CGAATCTTCTTTTTCTTTTCCTTTGGT 59.293 33.333 0.00 0.00 0.00 3.67
371 372 9.817809 AATCTTCTTTTTCTTTTCCTTTGGTAC 57.182 29.630 0.00 0.00 0.00 3.34
372 373 8.589701 TCTTCTTTTTCTTTTCCTTTGGTACT 57.410 30.769 0.00 0.00 0.00 2.73
373 374 8.466798 TCTTCTTTTTCTTTTCCTTTGGTACTG 58.533 33.333 0.00 0.00 0.00 2.74
374 375 7.712204 TCTTTTTCTTTTCCTTTGGTACTGT 57.288 32.000 0.00 0.00 0.00 3.55
375 376 7.768240 TCTTTTTCTTTTCCTTTGGTACTGTC 58.232 34.615 0.00 0.00 0.00 3.51
376 377 6.459670 TTTTCTTTTCCTTTGGTACTGTCC 57.540 37.500 0.00 0.00 0.00 4.02
377 378 3.735591 TCTTTTCCTTTGGTACTGTCCG 58.264 45.455 0.00 0.00 0.00 4.79
378 379 2.554370 TTTCCTTTGGTACTGTCCGG 57.446 50.000 0.00 0.00 0.00 5.14
379 380 1.426751 TTCCTTTGGTACTGTCCGGT 58.573 50.000 0.00 0.00 0.00 5.28
380 381 0.971386 TCCTTTGGTACTGTCCGGTC 59.029 55.000 0.00 0.00 0.00 4.79
381 382 0.974383 CCTTTGGTACTGTCCGGTCT 59.026 55.000 0.00 0.00 0.00 3.85
382 383 1.067071 CCTTTGGTACTGTCCGGTCTC 60.067 57.143 0.00 0.00 0.00 3.36
383 384 1.616865 CTTTGGTACTGTCCGGTCTCA 59.383 52.381 0.00 0.00 0.00 3.27
384 385 1.707106 TTGGTACTGTCCGGTCTCAA 58.293 50.000 0.00 0.00 0.00 3.02
385 386 1.933021 TGGTACTGTCCGGTCTCAAT 58.067 50.000 0.00 0.00 0.00 2.57
386 387 2.253610 TGGTACTGTCCGGTCTCAATT 58.746 47.619 0.00 0.00 0.00 2.32
387 388 3.433343 TGGTACTGTCCGGTCTCAATTA 58.567 45.455 0.00 0.00 0.00 1.40
388 389 3.446161 TGGTACTGTCCGGTCTCAATTAG 59.554 47.826 0.00 0.00 0.00 1.73
389 390 3.446516 GGTACTGTCCGGTCTCAATTAGT 59.553 47.826 0.00 0.00 0.00 2.24
390 391 4.641989 GGTACTGTCCGGTCTCAATTAGTA 59.358 45.833 0.00 0.00 0.00 1.82
391 392 4.715527 ACTGTCCGGTCTCAATTAGTAC 57.284 45.455 0.00 0.00 0.00 2.73
435 436 2.036475 CAGGTCCGATCCGATCTCAATT 59.964 50.000 6.81 0.00 0.00 2.32
436 437 3.255888 CAGGTCCGATCCGATCTCAATTA 59.744 47.826 6.81 0.00 0.00 1.40
437 438 3.256136 AGGTCCGATCCGATCTCAATTAC 59.744 47.826 6.81 0.00 0.00 1.89
438 439 3.235195 GTCCGATCCGATCTCAATTACG 58.765 50.000 6.81 0.00 0.00 3.18
439 440 3.058432 GTCCGATCCGATCTCAATTACGA 60.058 47.826 6.81 0.00 0.00 3.43
440 441 3.188667 TCCGATCCGATCTCAATTACGAG 59.811 47.826 6.81 0.00 0.00 4.18
461 462 6.183360 ACGAGTAGTAAGGAGTATTTCGTGAC 60.183 42.308 0.00 0.00 34.78 3.67
462 463 6.116680 AGTAGTAAGGAGTATTTCGTGACG 57.883 41.667 0.00 0.00 31.50 4.35
463 464 3.767278 AGTAAGGAGTATTTCGTGACGC 58.233 45.455 0.00 0.00 31.50 5.19
464 465 1.625616 AAGGAGTATTTCGTGACGCG 58.374 50.000 3.53 3.53 43.01 6.01
465 466 0.524862 AGGAGTATTTCGTGACGCGT 59.475 50.000 13.85 13.85 42.13 6.01
466 467 1.068055 AGGAGTATTTCGTGACGCGTT 60.068 47.619 15.53 0.00 42.13 4.84
467 468 1.058695 GGAGTATTTCGTGACGCGTTG 59.941 52.381 15.53 7.01 42.13 4.10
468 469 1.717645 GAGTATTTCGTGACGCGTTGT 59.282 47.619 15.53 0.00 42.13 3.32
469 470 1.454276 AGTATTTCGTGACGCGTTGTG 59.546 47.619 15.53 6.17 42.13 3.33
470 471 0.162082 TATTTCGTGACGCGTTGTGC 59.838 50.000 15.53 0.00 42.13 4.57
471 472 1.767127 ATTTCGTGACGCGTTGTGCA 61.767 50.000 15.53 3.08 46.97 4.57
472 473 1.767127 TTTCGTGACGCGTTGTGCAT 61.767 50.000 15.53 0.00 46.97 3.96
473 474 2.153219 TTCGTGACGCGTTGTGCATC 62.153 55.000 15.53 0.00 46.97 3.91
474 475 2.173382 GTGACGCGTTGTGCATCC 59.827 61.111 15.53 0.00 46.97 3.51
475 476 2.280457 TGACGCGTTGTGCATCCA 60.280 55.556 15.53 0.00 46.97 3.41
476 477 2.316867 TGACGCGTTGTGCATCCAG 61.317 57.895 15.53 0.00 46.97 3.86
477 478 2.027073 GACGCGTTGTGCATCCAGA 61.027 57.895 15.53 0.00 46.97 3.86
478 479 1.959899 GACGCGTTGTGCATCCAGAG 61.960 60.000 15.53 0.00 46.97 3.35
479 480 2.029288 CGCGTTGTGCATCCAGAGT 61.029 57.895 0.00 0.00 46.97 3.24
480 481 1.790387 GCGTTGTGCATCCAGAGTC 59.210 57.895 0.00 0.00 45.45 3.36
481 482 1.639298 GCGTTGTGCATCCAGAGTCC 61.639 60.000 0.00 0.00 45.45 3.85
482 483 1.354337 CGTTGTGCATCCAGAGTCCG 61.354 60.000 0.00 0.00 0.00 4.79
483 484 1.021390 GTTGTGCATCCAGAGTCCGG 61.021 60.000 0.00 0.00 0.00 5.14
484 485 1.480212 TTGTGCATCCAGAGTCCGGT 61.480 55.000 0.00 0.00 0.00 5.28
485 486 1.296715 GTGCATCCAGAGTCCGGTT 59.703 57.895 0.00 0.00 0.00 4.44
486 487 0.741221 GTGCATCCAGAGTCCGGTTC 60.741 60.000 0.00 0.27 0.00 3.62
487 488 1.519455 GCATCCAGAGTCCGGTTCG 60.519 63.158 0.00 0.00 0.00 3.95
488 489 1.890894 CATCCAGAGTCCGGTTCGT 59.109 57.895 0.00 0.00 0.00 3.85
489 490 1.100510 CATCCAGAGTCCGGTTCGTA 58.899 55.000 0.00 0.00 0.00 3.43
490 491 1.475280 CATCCAGAGTCCGGTTCGTAA 59.525 52.381 0.00 0.00 0.00 3.18
491 492 1.843368 TCCAGAGTCCGGTTCGTAAT 58.157 50.000 0.00 0.00 0.00 1.89
492 493 1.475280 TCCAGAGTCCGGTTCGTAATG 59.525 52.381 0.00 0.00 0.00 1.90
493 494 1.278238 CAGAGTCCGGTTCGTAATGC 58.722 55.000 0.00 0.00 0.00 3.56
494 495 0.892755 AGAGTCCGGTTCGTAATGCA 59.107 50.000 0.00 0.00 0.00 3.96
495 496 1.480954 AGAGTCCGGTTCGTAATGCAT 59.519 47.619 0.00 0.00 0.00 3.96
496 497 1.593006 GAGTCCGGTTCGTAATGCATG 59.407 52.381 0.00 0.00 0.00 4.06
497 498 1.206132 AGTCCGGTTCGTAATGCATGA 59.794 47.619 0.00 0.00 0.00 3.07
498 499 2.158957 AGTCCGGTTCGTAATGCATGAT 60.159 45.455 0.00 0.00 0.00 2.45
499 500 2.221055 GTCCGGTTCGTAATGCATGATC 59.779 50.000 0.00 0.00 0.00 2.92
500 501 2.102420 TCCGGTTCGTAATGCATGATCT 59.898 45.455 0.00 0.00 0.00 2.75
501 502 3.319689 TCCGGTTCGTAATGCATGATCTA 59.680 43.478 0.00 0.00 0.00 1.98
502 503 3.428870 CCGGTTCGTAATGCATGATCTAC 59.571 47.826 0.00 0.00 0.00 2.59
503 504 4.299155 CGGTTCGTAATGCATGATCTACT 58.701 43.478 0.00 0.00 0.00 2.57
506 507 6.129168 CGGTTCGTAATGCATGATCTACTTAC 60.129 42.308 0.00 0.00 0.00 2.34
524 525 5.675538 ACTTACCTAGCCAGCTCAATAAAG 58.324 41.667 0.00 0.00 0.00 1.85
527 528 5.693769 ACCTAGCCAGCTCAATAAAGTAA 57.306 39.130 0.00 0.00 0.00 2.24
533 534 2.030457 CAGCTCAATAAAGTAACCGGCG 59.970 50.000 0.00 0.00 0.00 6.46
540 541 0.604511 AAAGTAACCGGCGGACCAAG 60.605 55.000 35.78 4.70 34.57 3.61
541 542 1.474332 AAGTAACCGGCGGACCAAGA 61.474 55.000 35.78 7.53 34.57 3.02
542 543 1.004679 GTAACCGGCGGACCAAGAA 60.005 57.895 35.78 6.21 34.57 2.52
551 552 1.301293 GGACCAAGAAGCCAGGGAG 59.699 63.158 0.00 0.00 0.00 4.30
569 570 1.265635 GAGACAGATCGATCGACCCAG 59.734 57.143 22.06 14.22 0.00 4.45
580 583 1.524621 CGACCCAGCATCATGGTCC 60.525 63.158 0.00 0.00 44.61 4.46
624 627 1.671328 CTGCTCGTCGATGTCCTTAGA 59.329 52.381 4.21 0.00 0.00 2.10
754 760 1.816074 TATCAACTTCAACGGCCACC 58.184 50.000 2.24 0.00 0.00 4.61
776 782 4.069232 CACGGAGCTCTTCGCCCA 62.069 66.667 14.64 0.00 40.39 5.36
996 1010 2.415625 GCACTTCTGGTACCACGAGTAG 60.416 54.545 19.81 12.78 30.09 2.57
1310 1339 0.249322 GCCTGCATGCACCATCATTC 60.249 55.000 18.46 0.00 0.00 2.67
1792 1828 4.510167 AAGATAAGGTTGATGGGGAGTG 57.490 45.455 0.00 0.00 0.00 3.51
1935 1971 5.614308 ACATGTATCCCACACAGTATGATG 58.386 41.667 0.00 0.00 40.86 3.07
1936 1972 5.366477 ACATGTATCCCACACAGTATGATGA 59.634 40.000 0.00 0.00 40.86 2.92
2013 2049 2.039879 ACCGCAGAGTTCCCTACAAATT 59.960 45.455 0.00 0.00 0.00 1.82
2348 2390 1.475280 TCTAGGTCGAAATGTGTCCCG 59.525 52.381 0.00 0.00 0.00 5.14
2351 2393 1.495951 GTCGAAATGTGTCCCGTGC 59.504 57.895 0.00 0.00 0.00 5.34
2358 2400 0.321210 ATGTGTCCCGTGCAAATCGA 60.321 50.000 0.00 0.00 0.00 3.59
2414 2459 4.398044 TCAAATTAAGGGCCGAGAAACATC 59.602 41.667 0.00 0.00 0.00 3.06
2425 2470 5.390991 GGCCGAGAAACATCTACTGAAAAAG 60.391 44.000 0.00 0.00 0.00 2.27
2448 2493 1.089920 CTCCATGGAAAACTGGCGAG 58.910 55.000 17.00 0.00 32.30 5.03
2452 2497 0.537143 ATGGAAAACTGGCGAGTGCA 60.537 50.000 0.71 0.00 45.35 4.57
2479 2524 3.231501 GACAGCAACGTCGACCAC 58.768 61.111 10.58 0.00 0.00 4.16
2582 2627 4.087892 CCACTGGCTACGGCTGCT 62.088 66.667 0.00 0.00 38.73 4.24
2583 2628 2.816958 CACTGGCTACGGCTGCTG 60.817 66.667 6.98 6.98 38.73 4.41
2609 2654 2.123982 GCCAAGGCCCTCTCCATG 60.124 66.667 0.00 0.00 34.56 3.66
2610 2655 2.123982 CCAAGGCCCTCTCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
2611 2656 2.679092 CAAGGCCCTCTCCATGCA 59.321 61.111 0.00 0.00 0.00 3.96
2612 2657 1.229359 CAAGGCCCTCTCCATGCAT 59.771 57.895 0.00 0.00 0.00 3.96
2630 2675 3.801997 CCAGGAAGGAGGCGCCAT 61.802 66.667 31.54 14.28 41.22 4.40
2631 2676 2.443394 CCAGGAAGGAGGCGCCATA 61.443 63.158 31.54 0.00 41.22 2.74
2634 2679 0.764369 AGGAAGGAGGCGCCATATCA 60.764 55.000 31.54 0.00 40.02 2.15
2641 2686 4.626081 GCGCCATATCACCGCCCT 62.626 66.667 0.00 0.00 41.72 5.19
2653 2698 2.892425 CGCCCTCACCTTCATCGC 60.892 66.667 0.00 0.00 0.00 4.58
2658 2703 3.664025 CTCACCTTCATCGCGGCCA 62.664 63.158 6.13 0.00 0.00 5.36
2717 2762 2.191846 AAGGGAGAGGGAGGGGGAA 61.192 63.158 0.00 0.00 0.00 3.97
2763 2808 1.521681 CCCCGAATCGGCTCAGAAC 60.522 63.158 17.50 0.00 46.86 3.01
2764 2809 1.218047 CCCGAATCGGCTCAGAACA 59.782 57.895 17.50 0.00 46.86 3.18
2767 2812 0.933097 CGAATCGGCTCAGAACATGG 59.067 55.000 0.00 0.00 0.00 3.66
2768 2813 1.471501 CGAATCGGCTCAGAACATGGA 60.472 52.381 0.00 0.00 0.00 3.41
2771 2816 1.266178 TCGGCTCAGAACATGGAGAA 58.734 50.000 0.00 0.00 32.87 2.87
2772 2817 1.623311 TCGGCTCAGAACATGGAGAAA 59.377 47.619 0.00 0.00 32.87 2.52
2773 2818 2.237143 TCGGCTCAGAACATGGAGAAAT 59.763 45.455 0.00 0.00 32.87 2.17
2774 2819 2.611292 CGGCTCAGAACATGGAGAAATC 59.389 50.000 0.00 0.00 32.87 2.17
2775 2820 2.948315 GGCTCAGAACATGGAGAAATCC 59.052 50.000 0.00 0.00 32.87 3.01
2776 2821 3.371380 GGCTCAGAACATGGAGAAATCCT 60.371 47.826 0.00 0.00 32.87 3.24
2777 2822 3.876320 GCTCAGAACATGGAGAAATCCTC 59.124 47.826 0.00 0.00 41.22 3.71
2778 2823 4.624843 GCTCAGAACATGGAGAAATCCTCA 60.625 45.833 0.00 0.00 43.76 3.86
2788 3121 7.824779 ACATGGAGAAATCCTCACTAGTTAAAC 59.175 37.037 0.00 0.00 43.76 2.01
2817 3150 6.279882 TCATCCGCAAATTTCTTTTGAAGTT 58.720 32.000 2.42 0.00 46.36 2.66
2887 3220 7.956943 GCAGTTTGGCATGATAAATAAACAAAC 59.043 33.333 0.00 0.00 43.85 2.93
2909 3242 6.743575 ACATAGCCATTGTTCTGTTTAGTC 57.256 37.500 0.00 0.00 0.00 2.59
2979 3312 7.734924 TCTTGGTTACAATCAGCATATCATC 57.265 36.000 0.00 0.00 35.73 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.128107 CGCATAAGATGAAAAATGTACTTTGTT 57.872 29.630 0.00 0.00 0.00 2.83
10 11 7.754924 CCGCATAAGATGAAAAATGTACTTTGT 59.245 33.333 0.00 0.00 0.00 2.83
11 12 7.967854 TCCGCATAAGATGAAAAATGTACTTTG 59.032 33.333 0.00 0.00 0.00 2.77
12 13 8.050778 TCCGCATAAGATGAAAAATGTACTTT 57.949 30.769 0.00 0.00 0.00 2.66
13 14 7.552687 TCTCCGCATAAGATGAAAAATGTACTT 59.447 33.333 0.00 0.00 0.00 2.24
14 15 7.047891 TCTCCGCATAAGATGAAAAATGTACT 58.952 34.615 0.00 0.00 0.00 2.73
15 16 7.224753 TCTCTCCGCATAAGATGAAAAATGTAC 59.775 37.037 0.00 0.00 0.00 2.90
16 17 7.272244 TCTCTCCGCATAAGATGAAAAATGTA 58.728 34.615 0.00 0.00 0.00 2.29
17 18 6.115446 TCTCTCCGCATAAGATGAAAAATGT 58.885 36.000 0.00 0.00 0.00 2.71
18 19 6.481313 TCTCTCTCCGCATAAGATGAAAAATG 59.519 38.462 0.00 0.00 0.00 2.32
19 20 6.586344 TCTCTCTCCGCATAAGATGAAAAAT 58.414 36.000 0.00 0.00 0.00 1.82
20 21 5.977635 TCTCTCTCCGCATAAGATGAAAAA 58.022 37.500 0.00 0.00 0.00 1.94
21 22 5.360999 TCTCTCTCTCCGCATAAGATGAAAA 59.639 40.000 0.00 0.00 0.00 2.29
22 23 4.889995 TCTCTCTCTCCGCATAAGATGAAA 59.110 41.667 0.00 0.00 0.00 2.69
23 24 4.464947 TCTCTCTCTCCGCATAAGATGAA 58.535 43.478 0.00 0.00 0.00 2.57
24 25 4.071423 CTCTCTCTCTCCGCATAAGATGA 58.929 47.826 0.00 0.00 0.00 2.92
25 26 4.071423 TCTCTCTCTCTCCGCATAAGATG 58.929 47.826 0.00 0.00 0.00 2.90
26 27 4.041567 TCTCTCTCTCTCTCCGCATAAGAT 59.958 45.833 0.00 0.00 0.00 2.40
27 28 3.389656 TCTCTCTCTCTCTCCGCATAAGA 59.610 47.826 0.00 0.00 0.00 2.10
28 29 3.738982 TCTCTCTCTCTCTCCGCATAAG 58.261 50.000 0.00 0.00 0.00 1.73
29 30 3.495983 CCTCTCTCTCTCTCTCCGCATAA 60.496 52.174 0.00 0.00 0.00 1.90
30 31 2.038426 CCTCTCTCTCTCTCTCCGCATA 59.962 54.545 0.00 0.00 0.00 3.14
31 32 1.202806 CCTCTCTCTCTCTCTCCGCAT 60.203 57.143 0.00 0.00 0.00 4.73
32 33 0.180171 CCTCTCTCTCTCTCTCCGCA 59.820 60.000 0.00 0.00 0.00 5.69
33 34 0.535102 CCCTCTCTCTCTCTCTCCGC 60.535 65.000 0.00 0.00 0.00 5.54
34 35 1.070758 CTCCCTCTCTCTCTCTCTCCG 59.929 61.905 0.00 0.00 0.00 4.63
35 36 2.408565 TCTCCCTCTCTCTCTCTCTCC 58.591 57.143 0.00 0.00 0.00 3.71
36 37 4.503714 TTTCTCCCTCTCTCTCTCTCTC 57.496 50.000 0.00 0.00 0.00 3.20
37 38 4.600062 GTTTTCTCCCTCTCTCTCTCTCT 58.400 47.826 0.00 0.00 0.00 3.10
38 39 3.377172 CGTTTTCTCCCTCTCTCTCTCTC 59.623 52.174 0.00 0.00 0.00 3.20
39 40 3.352648 CGTTTTCTCCCTCTCTCTCTCT 58.647 50.000 0.00 0.00 0.00 3.10
40 41 2.159296 GCGTTTTCTCCCTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
41 42 1.822371 GCGTTTTCTCCCTCTCTCTCT 59.178 52.381 0.00 0.00 0.00 3.10
42 43 1.134936 GGCGTTTTCTCCCTCTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
43 44 0.899019 GGCGTTTTCTCCCTCTCTCT 59.101 55.000 0.00 0.00 0.00 3.10
44 45 0.899019 AGGCGTTTTCTCCCTCTCTC 59.101 55.000 0.00 0.00 0.00 3.20
45 46 1.353091 AAGGCGTTTTCTCCCTCTCT 58.647 50.000 0.00 0.00 0.00 3.10
46 47 2.496470 TCTAAGGCGTTTTCTCCCTCTC 59.504 50.000 0.00 0.00 0.00 3.20
47 48 2.537143 TCTAAGGCGTTTTCTCCCTCT 58.463 47.619 0.00 0.00 0.00 3.69
48 49 3.329929 TTCTAAGGCGTTTTCTCCCTC 57.670 47.619 0.00 0.00 0.00 4.30
49 50 4.010349 CAATTCTAAGGCGTTTTCTCCCT 58.990 43.478 0.00 0.00 0.00 4.20
50 51 4.007659 TCAATTCTAAGGCGTTTTCTCCC 58.992 43.478 0.00 0.00 0.00 4.30
51 52 5.622770 TTCAATTCTAAGGCGTTTTCTCC 57.377 39.130 0.00 0.00 0.00 3.71
52 53 7.748847 TGTATTCAATTCTAAGGCGTTTTCTC 58.251 34.615 0.00 0.00 0.00 2.87
53 54 7.681939 TGTATTCAATTCTAAGGCGTTTTCT 57.318 32.000 0.00 0.00 0.00 2.52
54 55 8.911247 AATGTATTCAATTCTAAGGCGTTTTC 57.089 30.769 0.00 0.00 0.00 2.29
55 56 8.519526 TGAATGTATTCAATTCTAAGGCGTTTT 58.480 29.630 4.89 0.00 43.26 2.43
56 57 8.050778 TGAATGTATTCAATTCTAAGGCGTTT 57.949 30.769 4.89 0.00 43.26 3.60
57 58 7.624360 TGAATGTATTCAATTCTAAGGCGTT 57.376 32.000 4.89 0.00 43.26 4.84
67 68 7.918033 TCACAACGTGTTTGAATGTATTCAATT 59.082 29.630 17.81 8.47 42.38 2.32
68 69 7.421599 TCACAACGTGTTTGAATGTATTCAAT 58.578 30.769 17.81 3.46 42.38 2.57
69 70 6.786207 TCACAACGTGTTTGAATGTATTCAA 58.214 32.000 14.27 14.27 42.44 2.69
70 71 6.364945 TCACAACGTGTTTGAATGTATTCA 57.635 33.333 3.28 3.28 38.58 2.57
71 72 7.851822 AATCACAACGTGTTTGAATGTATTC 57.148 32.000 0.00 0.00 38.73 1.75
72 73 9.340695 CATAATCACAACGTGTTTGAATGTATT 57.659 29.630 0.00 0.00 38.73 1.89
73 74 8.511321 ACATAATCACAACGTGTTTGAATGTAT 58.489 29.630 8.68 2.28 38.73 2.29
74 75 7.800847 CACATAATCACAACGTGTTTGAATGTA 59.199 33.333 9.54 1.19 38.73 2.29
75 76 6.636447 CACATAATCACAACGTGTTTGAATGT 59.364 34.615 0.00 0.00 38.73 2.71
76 77 6.855403 TCACATAATCACAACGTGTTTGAATG 59.145 34.615 0.00 0.00 38.73 2.67
77 78 6.964908 TCACATAATCACAACGTGTTTGAAT 58.035 32.000 0.00 0.00 38.73 2.57
78 79 6.364945 TCACATAATCACAACGTGTTTGAA 57.635 33.333 0.00 0.00 38.73 2.69
79 80 5.559991 GCTCACATAATCACAACGTGTTTGA 60.560 40.000 0.00 0.00 38.73 2.69
80 81 4.612614 GCTCACATAATCACAACGTGTTTG 59.387 41.667 0.00 0.00 41.49 2.93
81 82 4.274705 TGCTCACATAATCACAACGTGTTT 59.725 37.500 0.00 0.00 34.79 2.83
82 83 3.812609 TGCTCACATAATCACAACGTGTT 59.187 39.130 0.00 0.00 34.79 3.32
83 84 3.186409 GTGCTCACATAATCACAACGTGT 59.814 43.478 0.00 0.00 34.79 4.49
84 85 3.424829 GGTGCTCACATAATCACAACGTG 60.425 47.826 2.21 0.00 34.45 4.49
85 86 2.742053 GGTGCTCACATAATCACAACGT 59.258 45.455 2.21 0.00 0.00 3.99
86 87 2.222796 CGGTGCTCACATAATCACAACG 60.223 50.000 2.21 0.00 0.00 4.10
87 88 3.000041 TCGGTGCTCACATAATCACAAC 59.000 45.455 2.21 0.00 0.00 3.32
88 89 3.056179 TCTCGGTGCTCACATAATCACAA 60.056 43.478 2.21 0.00 0.00 3.33
89 90 2.495669 TCTCGGTGCTCACATAATCACA 59.504 45.455 2.21 0.00 0.00 3.58
90 91 2.860735 GTCTCGGTGCTCACATAATCAC 59.139 50.000 2.21 0.00 0.00 3.06
91 92 2.159099 GGTCTCGGTGCTCACATAATCA 60.159 50.000 2.21 0.00 0.00 2.57
92 93 2.159099 TGGTCTCGGTGCTCACATAATC 60.159 50.000 2.21 0.00 0.00 1.75
93 94 1.831106 TGGTCTCGGTGCTCACATAAT 59.169 47.619 2.21 0.00 0.00 1.28
94 95 1.067142 GTGGTCTCGGTGCTCACATAA 60.067 52.381 2.21 0.00 0.00 1.90
95 96 0.530744 GTGGTCTCGGTGCTCACATA 59.469 55.000 2.21 0.00 0.00 2.29
96 97 1.293498 GTGGTCTCGGTGCTCACAT 59.707 57.895 2.21 0.00 0.00 3.21
97 98 2.734591 GTGGTCTCGGTGCTCACA 59.265 61.111 2.21 0.00 0.00 3.58
98 99 2.048127 GGTGGTCTCGGTGCTCAC 60.048 66.667 0.00 0.00 0.00 3.51
99 100 3.680786 CGGTGGTCTCGGTGCTCA 61.681 66.667 0.00 0.00 0.00 4.26
100 101 1.870055 TAACGGTGGTCTCGGTGCTC 61.870 60.000 0.00 0.00 0.00 4.26
101 102 1.466025 TTAACGGTGGTCTCGGTGCT 61.466 55.000 0.00 0.00 0.00 4.40
102 103 0.600782 TTTAACGGTGGTCTCGGTGC 60.601 55.000 0.00 0.00 0.00 5.01
103 104 1.000060 TCTTTAACGGTGGTCTCGGTG 60.000 52.381 0.00 0.00 0.00 4.94
104 105 1.271656 CTCTTTAACGGTGGTCTCGGT 59.728 52.381 0.00 0.00 0.00 4.69
105 106 1.403780 CCTCTTTAACGGTGGTCTCGG 60.404 57.143 0.00 0.00 0.00 4.63
106 107 1.403780 CCCTCTTTAACGGTGGTCTCG 60.404 57.143 0.00 0.00 0.00 4.04
107 108 1.622312 ACCCTCTTTAACGGTGGTCTC 59.378 52.381 0.00 0.00 0.00 3.36
108 109 1.346722 CACCCTCTTTAACGGTGGTCT 59.653 52.381 0.00 0.00 42.81 3.85
109 110 1.804601 CACCCTCTTTAACGGTGGTC 58.195 55.000 0.00 0.00 42.81 4.02
110 111 0.250597 GCACCCTCTTTAACGGTGGT 60.251 55.000 7.51 1.42 45.95 4.16
111 112 1.296056 CGCACCCTCTTTAACGGTGG 61.296 60.000 7.51 2.07 45.95 4.61
113 114 0.393820 TTCGCACCCTCTTTAACGGT 59.606 50.000 0.00 0.00 0.00 4.83
114 115 1.076332 CTTCGCACCCTCTTTAACGG 58.924 55.000 0.00 0.00 0.00 4.44
115 116 1.076332 CCTTCGCACCCTCTTTAACG 58.924 55.000 0.00 0.00 0.00 3.18
116 117 2.347731 CTCCTTCGCACCCTCTTTAAC 58.652 52.381 0.00 0.00 0.00 2.01
117 118 1.278127 CCTCCTTCGCACCCTCTTTAA 59.722 52.381 0.00 0.00 0.00 1.52
118 119 0.902531 CCTCCTTCGCACCCTCTTTA 59.097 55.000 0.00 0.00 0.00 1.85
119 120 0.836400 TCCTCCTTCGCACCCTCTTT 60.836 55.000 0.00 0.00 0.00 2.52
120 121 0.618968 ATCCTCCTTCGCACCCTCTT 60.619 55.000 0.00 0.00 0.00 2.85
121 122 0.261991 TATCCTCCTTCGCACCCTCT 59.738 55.000 0.00 0.00 0.00 3.69
122 123 1.069358 CTTATCCTCCTTCGCACCCTC 59.931 57.143 0.00 0.00 0.00 4.30
123 124 1.123928 CTTATCCTCCTTCGCACCCT 58.876 55.000 0.00 0.00 0.00 4.34
124 125 0.533085 GCTTATCCTCCTTCGCACCC 60.533 60.000 0.00 0.00 0.00 4.61
125 126 0.876342 CGCTTATCCTCCTTCGCACC 60.876 60.000 0.00 0.00 0.00 5.01
126 127 0.876342 CCGCTTATCCTCCTTCGCAC 60.876 60.000 0.00 0.00 0.00 5.34
127 128 1.441729 CCGCTTATCCTCCTTCGCA 59.558 57.895 0.00 0.00 0.00 5.10
128 129 1.956678 GCCGCTTATCCTCCTTCGC 60.957 63.158 0.00 0.00 0.00 4.70
129 130 0.179084 TTGCCGCTTATCCTCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
130 131 1.300481 GTTGCCGCTTATCCTCCTTC 58.700 55.000 0.00 0.00 0.00 3.46
131 132 0.618458 TGTTGCCGCTTATCCTCCTT 59.382 50.000 0.00 0.00 0.00 3.36
132 133 0.179000 CTGTTGCCGCTTATCCTCCT 59.821 55.000 0.00 0.00 0.00 3.69
133 134 0.178068 TCTGTTGCCGCTTATCCTCC 59.822 55.000 0.00 0.00 0.00 4.30
134 135 2.246719 ATCTGTTGCCGCTTATCCTC 57.753 50.000 0.00 0.00 0.00 3.71
135 136 3.557898 CCATATCTGTTGCCGCTTATCCT 60.558 47.826 0.00 0.00 0.00 3.24
136 137 2.744202 CCATATCTGTTGCCGCTTATCC 59.256 50.000 0.00 0.00 0.00 2.59
137 138 2.744202 CCCATATCTGTTGCCGCTTATC 59.256 50.000 0.00 0.00 0.00 1.75
138 139 2.106511 ACCCATATCTGTTGCCGCTTAT 59.893 45.455 0.00 0.00 0.00 1.73
139 140 1.488812 ACCCATATCTGTTGCCGCTTA 59.511 47.619 0.00 0.00 0.00 3.09
140 141 0.255890 ACCCATATCTGTTGCCGCTT 59.744 50.000 0.00 0.00 0.00 4.68
141 142 0.255890 AACCCATATCTGTTGCCGCT 59.744 50.000 0.00 0.00 0.00 5.52
142 143 0.381801 CAACCCATATCTGTTGCCGC 59.618 55.000 1.96 0.00 35.87 6.53
146 147 3.181484 CCACATGCAACCCATATCTGTTG 60.181 47.826 8.78 8.78 43.62 3.33
147 148 3.025978 CCACATGCAACCCATATCTGTT 58.974 45.455 0.00 0.00 31.47 3.16
148 149 2.241941 TCCACATGCAACCCATATCTGT 59.758 45.455 0.00 0.00 31.47 3.41
149 150 2.620115 GTCCACATGCAACCCATATCTG 59.380 50.000 0.00 0.00 31.47 2.90
150 151 2.241941 TGTCCACATGCAACCCATATCT 59.758 45.455 0.00 0.00 31.47 1.98
151 152 2.653726 TGTCCACATGCAACCCATATC 58.346 47.619 0.00 0.00 31.47 1.63
152 153 2.824689 TGTCCACATGCAACCCATAT 57.175 45.000 0.00 0.00 31.47 1.78
153 154 2.377073 CATGTCCACATGCAACCCATA 58.623 47.619 6.75 0.00 45.92 2.74
154 155 1.187974 CATGTCCACATGCAACCCAT 58.812 50.000 6.75 0.00 45.92 4.00
155 156 2.656049 CATGTCCACATGCAACCCA 58.344 52.632 6.75 0.00 45.92 4.51
163 164 2.108075 TGAAGACCCAACATGTCCACAT 59.892 45.455 0.00 0.00 36.96 3.21
164 165 1.492599 TGAAGACCCAACATGTCCACA 59.507 47.619 0.00 0.00 33.09 4.17
165 166 2.154462 CTGAAGACCCAACATGTCCAC 58.846 52.381 0.00 0.00 33.09 4.02
166 167 1.774254 ACTGAAGACCCAACATGTCCA 59.226 47.619 0.00 0.00 33.09 4.02
167 168 2.568623 ACTGAAGACCCAACATGTCC 57.431 50.000 0.00 0.00 33.09 4.02
168 169 4.396166 CCATAACTGAAGACCCAACATGTC 59.604 45.833 0.00 0.00 0.00 3.06
169 170 4.202567 ACCATAACTGAAGACCCAACATGT 60.203 41.667 0.00 0.00 0.00 3.21
170 171 4.335416 ACCATAACTGAAGACCCAACATG 58.665 43.478 0.00 0.00 0.00 3.21
171 172 4.657814 ACCATAACTGAAGACCCAACAT 57.342 40.909 0.00 0.00 0.00 2.71
172 173 4.447138 AACCATAACTGAAGACCCAACA 57.553 40.909 0.00 0.00 0.00 3.33
173 174 5.784578 AAAACCATAACTGAAGACCCAAC 57.215 39.130 0.00 0.00 0.00 3.77
174 175 5.659079 ACAAAAACCATAACTGAAGACCCAA 59.341 36.000 0.00 0.00 0.00 4.12
175 176 5.068460 CACAAAAACCATAACTGAAGACCCA 59.932 40.000 0.00 0.00 0.00 4.51
176 177 5.068591 ACACAAAAACCATAACTGAAGACCC 59.931 40.000 0.00 0.00 0.00 4.46
177 178 6.144078 ACACAAAAACCATAACTGAAGACC 57.856 37.500 0.00 0.00 0.00 3.85
178 179 8.149973 TCTACACAAAAACCATAACTGAAGAC 57.850 34.615 0.00 0.00 0.00 3.01
179 180 8.208224 TCTCTACACAAAAACCATAACTGAAGA 58.792 33.333 0.00 0.00 0.00 2.87
180 181 8.283291 GTCTCTACACAAAAACCATAACTGAAG 58.717 37.037 0.00 0.00 0.00 3.02
181 182 7.042321 CGTCTCTACACAAAAACCATAACTGAA 60.042 37.037 0.00 0.00 0.00 3.02
182 183 6.422701 CGTCTCTACACAAAAACCATAACTGA 59.577 38.462 0.00 0.00 0.00 3.41
183 184 6.202188 ACGTCTCTACACAAAAACCATAACTG 59.798 38.462 0.00 0.00 0.00 3.16
184 185 6.202188 CACGTCTCTACACAAAAACCATAACT 59.798 38.462 0.00 0.00 0.00 2.24
185 186 6.018507 ACACGTCTCTACACAAAAACCATAAC 60.019 38.462 0.00 0.00 0.00 1.89
186 187 6.018588 CACACGTCTCTACACAAAAACCATAA 60.019 38.462 0.00 0.00 0.00 1.90
187 188 5.464057 CACACGTCTCTACACAAAAACCATA 59.536 40.000 0.00 0.00 0.00 2.74
188 189 4.272504 CACACGTCTCTACACAAAAACCAT 59.727 41.667 0.00 0.00 0.00 3.55
189 190 3.619483 CACACGTCTCTACACAAAAACCA 59.381 43.478 0.00 0.00 0.00 3.67
190 191 3.001939 CCACACGTCTCTACACAAAAACC 59.998 47.826 0.00 0.00 0.00 3.27
191 192 3.001939 CCCACACGTCTCTACACAAAAAC 59.998 47.826 0.00 0.00 0.00 2.43
192 193 3.118702 TCCCACACGTCTCTACACAAAAA 60.119 43.478 0.00 0.00 0.00 1.94
193 194 2.431419 TCCCACACGTCTCTACACAAAA 59.569 45.455 0.00 0.00 0.00 2.44
194 195 2.033372 TCCCACACGTCTCTACACAAA 58.967 47.619 0.00 0.00 0.00 2.83
195 196 1.694844 TCCCACACGTCTCTACACAA 58.305 50.000 0.00 0.00 0.00 3.33
196 197 1.919240 ATCCCACACGTCTCTACACA 58.081 50.000 0.00 0.00 0.00 3.72
197 198 3.314541 AAATCCCACACGTCTCTACAC 57.685 47.619 0.00 0.00 0.00 2.90
198 199 4.345859 AAAAATCCCACACGTCTCTACA 57.654 40.909 0.00 0.00 0.00 2.74
216 217 4.634883 TGCACTGTAACGAGGTAACAAAAA 59.365 37.500 0.00 0.00 41.41 1.94
217 218 4.034279 GTGCACTGTAACGAGGTAACAAAA 59.966 41.667 10.32 0.00 41.41 2.44
218 219 3.556775 GTGCACTGTAACGAGGTAACAAA 59.443 43.478 10.32 0.00 41.41 2.83
219 220 3.125316 GTGCACTGTAACGAGGTAACAA 58.875 45.455 10.32 0.00 41.41 2.83
220 221 2.746269 GTGCACTGTAACGAGGTAACA 58.254 47.619 10.32 0.00 41.41 2.41
221 222 1.717645 CGTGCACTGTAACGAGGTAAC 59.282 52.381 16.19 0.00 42.32 2.50
222 223 1.336148 CCGTGCACTGTAACGAGGTAA 60.336 52.381 16.19 0.00 42.32 2.85
223 224 0.241749 CCGTGCACTGTAACGAGGTA 59.758 55.000 16.19 0.00 42.32 3.08
224 225 1.006571 CCGTGCACTGTAACGAGGT 60.007 57.895 16.19 0.00 42.32 3.85
225 226 1.736645 CCCGTGCACTGTAACGAGG 60.737 63.158 16.19 5.71 42.32 4.63
226 227 2.380410 GCCCGTGCACTGTAACGAG 61.380 63.158 16.19 4.92 42.32 4.18
227 228 2.356553 GCCCGTGCACTGTAACGA 60.357 61.111 16.19 0.00 42.32 3.85
228 229 2.357034 AGCCCGTGCACTGTAACG 60.357 61.111 16.19 0.00 41.13 3.18
229 230 0.602905 AAGAGCCCGTGCACTGTAAC 60.603 55.000 16.19 3.81 38.50 2.50
230 231 0.107831 AAAGAGCCCGTGCACTGTAA 59.892 50.000 16.19 0.00 38.50 2.41
231 232 0.107831 AAAAGAGCCCGTGCACTGTA 59.892 50.000 16.19 0.00 38.50 2.74
232 233 1.152963 AAAAGAGCCCGTGCACTGT 60.153 52.632 16.19 0.00 38.50 3.55
233 234 1.283793 CAAAAGAGCCCGTGCACTG 59.716 57.895 16.19 8.49 38.50 3.66
234 235 2.555547 GCAAAAGAGCCCGTGCACT 61.556 57.895 16.19 0.00 40.36 4.40
235 236 1.234615 TAGCAAAAGAGCCCGTGCAC 61.235 55.000 6.82 6.82 41.13 4.57
236 237 0.955428 CTAGCAAAAGAGCCCGTGCA 60.955 55.000 0.00 0.00 41.13 4.57
237 238 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
238 239 1.079503 GACTAGCAAAAGAGCCCGTG 58.920 55.000 0.00 0.00 34.23 4.94
239 240 0.389948 CGACTAGCAAAAGAGCCCGT 60.390 55.000 0.00 0.00 34.23 5.28
240 241 0.108804 TCGACTAGCAAAAGAGCCCG 60.109 55.000 0.00 0.00 34.23 6.13
241 242 1.204941 TCTCGACTAGCAAAAGAGCCC 59.795 52.381 0.00 0.00 34.23 5.19
242 243 2.656560 TCTCGACTAGCAAAAGAGCC 57.343 50.000 0.00 0.00 34.23 4.70
243 244 6.648725 TTTTATCTCGACTAGCAAAAGAGC 57.351 37.500 0.00 0.00 0.00 4.09
244 245 8.467402 TCTTTTTATCTCGACTAGCAAAAGAG 57.533 34.615 9.24 0.00 34.22 2.85
245 246 8.827177 TTCTTTTTATCTCGACTAGCAAAAGA 57.173 30.769 9.24 9.24 35.66 2.52
248 249 8.380644 CGATTTCTTTTTATCTCGACTAGCAAA 58.619 33.333 0.00 0.00 0.00 3.68
249 250 7.758076 TCGATTTCTTTTTATCTCGACTAGCAA 59.242 33.333 0.00 0.00 30.94 3.91
250 251 7.255569 TCGATTTCTTTTTATCTCGACTAGCA 58.744 34.615 0.00 0.00 30.94 3.49
251 252 7.644551 TCTCGATTTCTTTTTATCTCGACTAGC 59.355 37.037 0.00 0.00 32.38 3.42
252 253 8.949953 GTCTCGATTTCTTTTTATCTCGACTAG 58.050 37.037 0.00 0.00 32.38 2.57
253 254 8.675504 AGTCTCGATTTCTTTTTATCTCGACTA 58.324 33.333 0.00 0.00 31.82 2.59
254 255 7.540299 AGTCTCGATTTCTTTTTATCTCGACT 58.460 34.615 0.00 0.00 32.38 4.18
255 256 7.043920 GGAGTCTCGATTTCTTTTTATCTCGAC 60.044 40.741 0.00 0.00 32.38 4.20
256 257 6.973474 GGAGTCTCGATTTCTTTTTATCTCGA 59.027 38.462 0.00 0.00 34.39 4.04
257 258 6.975772 AGGAGTCTCGATTTCTTTTTATCTCG 59.024 38.462 0.00 0.00 0.00 4.04
258 259 7.254286 GCAGGAGTCTCGATTTCTTTTTATCTC 60.254 40.741 0.00 0.00 0.00 2.75
259 260 6.536941 GCAGGAGTCTCGATTTCTTTTTATCT 59.463 38.462 0.00 0.00 0.00 1.98
260 261 6.508721 CGCAGGAGTCTCGATTTCTTTTTATC 60.509 42.308 0.00 0.00 0.00 1.75
261 262 5.292101 CGCAGGAGTCTCGATTTCTTTTTAT 59.708 40.000 0.00 0.00 0.00 1.40
262 263 4.625742 CGCAGGAGTCTCGATTTCTTTTTA 59.374 41.667 0.00 0.00 0.00 1.52
263 264 3.433615 CGCAGGAGTCTCGATTTCTTTTT 59.566 43.478 0.00 0.00 0.00 1.94
264 265 2.996621 CGCAGGAGTCTCGATTTCTTTT 59.003 45.455 0.00 0.00 0.00 2.27
265 266 2.231478 TCGCAGGAGTCTCGATTTCTTT 59.769 45.455 0.00 0.00 0.00 2.52
266 267 1.819288 TCGCAGGAGTCTCGATTTCTT 59.181 47.619 0.00 0.00 0.00 2.52
267 268 1.133407 GTCGCAGGAGTCTCGATTTCT 59.867 52.381 6.11 0.00 34.61 2.52
268 269 1.135373 TGTCGCAGGAGTCTCGATTTC 60.135 52.381 6.11 0.00 34.61 2.17
269 270 0.888619 TGTCGCAGGAGTCTCGATTT 59.111 50.000 6.11 0.00 34.61 2.17
270 271 0.171455 GTGTCGCAGGAGTCTCGATT 59.829 55.000 6.11 0.00 34.61 3.34
271 272 1.803943 GTGTCGCAGGAGTCTCGAT 59.196 57.895 6.11 0.00 34.61 3.59
272 273 2.677979 CGTGTCGCAGGAGTCTCGA 61.678 63.158 0.00 0.00 0.00 4.04
273 274 2.202362 CGTGTCGCAGGAGTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
284 285 2.717190 GTGCGTTTGTGCGTGTCG 60.717 61.111 0.00 0.00 37.81 4.35
285 286 2.717190 CGTGCGTTTGTGCGTGTC 60.717 61.111 0.00 0.00 37.81 3.67
286 287 4.879686 GCGTGCGTTTGTGCGTGT 62.880 61.111 0.00 0.00 37.81 4.49
287 288 4.877882 TGCGTGCGTTTGTGCGTG 62.878 61.111 0.00 0.00 37.81 5.34
288 289 4.167359 TTGCGTGCGTTTGTGCGT 62.167 55.556 0.00 0.00 37.81 5.24
289 290 3.667486 GTTGCGTGCGTTTGTGCG 61.667 61.111 0.00 0.00 37.81 5.34
290 291 3.319316 GGTTGCGTGCGTTTGTGC 61.319 61.111 0.00 0.00 0.00 4.57
291 292 1.470699 CTTGGTTGCGTGCGTTTGTG 61.471 55.000 0.00 0.00 0.00 3.33
292 293 1.226547 CTTGGTTGCGTGCGTTTGT 60.227 52.632 0.00 0.00 0.00 2.83
293 294 0.028242 TACTTGGTTGCGTGCGTTTG 59.972 50.000 0.00 0.00 0.00 2.93
294 295 0.948678 ATACTTGGTTGCGTGCGTTT 59.051 45.000 0.00 0.00 0.00 3.60
295 296 0.948678 AATACTTGGTTGCGTGCGTT 59.051 45.000 0.00 0.00 0.00 4.84
296 297 0.237235 CAATACTTGGTTGCGTGCGT 59.763 50.000 0.00 0.00 0.00 5.24
297 298 0.515127 TCAATACTTGGTTGCGTGCG 59.485 50.000 0.00 0.00 0.00 5.34
298 299 1.135689 CCTCAATACTTGGTTGCGTGC 60.136 52.381 0.00 0.00 0.00 5.34
299 300 2.159627 GTCCTCAATACTTGGTTGCGTG 59.840 50.000 0.00 0.00 0.00 5.34
300 301 2.038557 AGTCCTCAATACTTGGTTGCGT 59.961 45.455 0.00 0.00 0.00 5.24
301 302 2.416547 CAGTCCTCAATACTTGGTTGCG 59.583 50.000 0.00 0.00 0.00 4.85
302 303 3.674997 TCAGTCCTCAATACTTGGTTGC 58.325 45.455 0.00 0.00 0.00 4.17
303 304 4.878397 GGATCAGTCCTCAATACTTGGTTG 59.122 45.833 0.00 0.00 41.60 3.77
304 305 4.383118 CGGATCAGTCCTCAATACTTGGTT 60.383 45.833 0.00 0.00 42.73 3.67
305 306 3.133003 CGGATCAGTCCTCAATACTTGGT 59.867 47.826 0.00 0.00 42.73 3.67
306 307 3.133003 ACGGATCAGTCCTCAATACTTGG 59.867 47.826 0.00 0.00 42.73 3.61
307 308 4.098654 AGACGGATCAGTCCTCAATACTTG 59.901 45.833 20.51 0.00 42.73 3.16
308 309 4.282496 AGACGGATCAGTCCTCAATACTT 58.718 43.478 20.51 0.00 42.73 2.24
309 310 3.886505 GAGACGGATCAGTCCTCAATACT 59.113 47.826 20.51 1.43 42.73 2.12
310 311 3.886505 AGAGACGGATCAGTCCTCAATAC 59.113 47.826 20.51 5.90 42.73 1.89
311 312 4.171878 AGAGACGGATCAGTCCTCAATA 57.828 45.455 20.51 0.00 42.73 1.90
312 313 3.025322 AGAGACGGATCAGTCCTCAAT 57.975 47.619 20.51 3.56 42.73 2.57
313 314 2.516227 AGAGACGGATCAGTCCTCAA 57.484 50.000 20.51 0.00 42.73 3.02
314 315 2.493675 CAAAGAGACGGATCAGTCCTCA 59.506 50.000 20.51 0.00 42.73 3.86
315 316 2.159170 CCAAAGAGACGGATCAGTCCTC 60.159 54.545 20.51 16.45 42.73 3.71
316 317 1.827969 CCAAAGAGACGGATCAGTCCT 59.172 52.381 20.51 14.65 42.73 3.85
317 318 1.550976 ACCAAAGAGACGGATCAGTCC 59.449 52.381 20.51 12.85 41.83 3.85
318 319 3.320673 AACCAAAGAGACGGATCAGTC 57.679 47.619 17.14 17.14 41.23 3.51
319 320 3.071023 TGAAACCAAAGAGACGGATCAGT 59.929 43.478 0.00 0.00 0.00 3.41
320 321 3.664107 TGAAACCAAAGAGACGGATCAG 58.336 45.455 0.00 0.00 0.00 2.90
321 322 3.762407 TGAAACCAAAGAGACGGATCA 57.238 42.857 0.00 0.00 0.00 2.92
322 323 3.307242 CGATGAAACCAAAGAGACGGATC 59.693 47.826 0.00 0.00 0.00 3.36
323 324 3.056107 TCGATGAAACCAAAGAGACGGAT 60.056 43.478 0.00 0.00 0.00 4.18
324 325 2.297880 TCGATGAAACCAAAGAGACGGA 59.702 45.455 0.00 0.00 0.00 4.69
325 326 2.683968 TCGATGAAACCAAAGAGACGG 58.316 47.619 0.00 0.00 0.00 4.79
326 327 4.627467 AGATTCGATGAAACCAAAGAGACG 59.373 41.667 0.00 0.00 0.00 4.18
327 328 6.370166 AGAAGATTCGATGAAACCAAAGAGAC 59.630 38.462 0.00 0.00 0.00 3.36
328 329 6.467677 AGAAGATTCGATGAAACCAAAGAGA 58.532 36.000 0.00 0.00 0.00 3.10
329 330 6.734104 AGAAGATTCGATGAAACCAAAGAG 57.266 37.500 0.00 0.00 0.00 2.85
330 331 7.510549 AAAGAAGATTCGATGAAACCAAAGA 57.489 32.000 0.00 0.00 0.00 2.52
331 332 8.579682 AAAAAGAAGATTCGATGAAACCAAAG 57.420 30.769 0.00 0.00 0.00 2.77
332 333 8.413229 AGAAAAAGAAGATTCGATGAAACCAAA 58.587 29.630 0.00 0.00 0.00 3.28
333 334 7.940850 AGAAAAAGAAGATTCGATGAAACCAA 58.059 30.769 0.00 0.00 0.00 3.67
334 335 7.510549 AGAAAAAGAAGATTCGATGAAACCA 57.489 32.000 0.00 0.00 0.00 3.67
335 336 8.803201 AAAGAAAAAGAAGATTCGATGAAACC 57.197 30.769 0.00 0.00 0.00 3.27
337 338 9.463443 GGAAAAGAAAAAGAAGATTCGATGAAA 57.537 29.630 0.00 0.00 0.00 2.69
338 339 8.850156 AGGAAAAGAAAAAGAAGATTCGATGAA 58.150 29.630 0.00 0.00 0.00 2.57
339 340 8.396272 AGGAAAAGAAAAAGAAGATTCGATGA 57.604 30.769 0.00 0.00 0.00 2.92
340 341 9.468532 AAAGGAAAAGAAAAAGAAGATTCGATG 57.531 29.630 0.00 0.00 0.00 3.84
341 342 9.468532 CAAAGGAAAAGAAAAAGAAGATTCGAT 57.531 29.630 0.00 0.00 0.00 3.59
342 343 7.920682 CCAAAGGAAAAGAAAAAGAAGATTCGA 59.079 33.333 0.00 0.00 0.00 3.71
343 344 7.706607 ACCAAAGGAAAAGAAAAAGAAGATTCG 59.293 33.333 0.00 0.00 0.00 3.34
344 345 8.948631 ACCAAAGGAAAAGAAAAAGAAGATTC 57.051 30.769 0.00 0.00 0.00 2.52
345 346 9.817809 GTACCAAAGGAAAAGAAAAAGAAGATT 57.182 29.630 0.00 0.00 0.00 2.40
346 347 9.201989 AGTACCAAAGGAAAAGAAAAAGAAGAT 57.798 29.630 0.00 0.00 0.00 2.40
347 348 8.466798 CAGTACCAAAGGAAAAGAAAAAGAAGA 58.533 33.333 0.00 0.00 0.00 2.87
348 349 8.251026 ACAGTACCAAAGGAAAAGAAAAAGAAG 58.749 33.333 0.00 0.00 0.00 2.85
349 350 8.129496 ACAGTACCAAAGGAAAAGAAAAAGAA 57.871 30.769 0.00 0.00 0.00 2.52
350 351 7.147966 GGACAGTACCAAAGGAAAAGAAAAAGA 60.148 37.037 0.00 0.00 0.00 2.52
351 352 6.978659 GGACAGTACCAAAGGAAAAGAAAAAG 59.021 38.462 0.00 0.00 0.00 2.27
352 353 6.404954 CGGACAGTACCAAAGGAAAAGAAAAA 60.405 38.462 0.00 0.00 0.00 1.94
353 354 5.066764 CGGACAGTACCAAAGGAAAAGAAAA 59.933 40.000 0.00 0.00 0.00 2.29
354 355 4.577283 CGGACAGTACCAAAGGAAAAGAAA 59.423 41.667 0.00 0.00 0.00 2.52
355 356 4.131596 CGGACAGTACCAAAGGAAAAGAA 58.868 43.478 0.00 0.00 0.00 2.52
356 357 3.495453 CCGGACAGTACCAAAGGAAAAGA 60.495 47.826 0.00 0.00 0.00 2.52
357 358 2.812011 CCGGACAGTACCAAAGGAAAAG 59.188 50.000 0.00 0.00 0.00 2.27
358 359 2.173143 ACCGGACAGTACCAAAGGAAAA 59.827 45.455 9.46 0.00 0.00 2.29
359 360 1.770061 ACCGGACAGTACCAAAGGAAA 59.230 47.619 9.46 0.00 0.00 3.13
360 361 1.345415 GACCGGACAGTACCAAAGGAA 59.655 52.381 9.46 0.00 0.00 3.36
361 362 0.971386 GACCGGACAGTACCAAAGGA 59.029 55.000 9.46 0.00 0.00 3.36
362 363 0.974383 AGACCGGACAGTACCAAAGG 59.026 55.000 9.46 0.00 0.00 3.11
363 364 1.616865 TGAGACCGGACAGTACCAAAG 59.383 52.381 9.46 0.00 0.00 2.77
364 365 1.707106 TGAGACCGGACAGTACCAAA 58.293 50.000 9.46 0.00 0.00 3.28
365 366 1.707106 TTGAGACCGGACAGTACCAA 58.293 50.000 9.46 0.00 0.00 3.67
366 367 1.933021 ATTGAGACCGGACAGTACCA 58.067 50.000 9.46 0.00 0.00 3.25
367 368 3.446516 ACTAATTGAGACCGGACAGTACC 59.553 47.826 9.46 0.00 0.00 3.34
368 369 4.715527 ACTAATTGAGACCGGACAGTAC 57.284 45.455 9.46 0.00 0.00 2.73
369 370 4.333649 CGTACTAATTGAGACCGGACAGTA 59.666 45.833 9.46 1.55 0.00 2.74
370 371 3.128242 CGTACTAATTGAGACCGGACAGT 59.872 47.826 9.46 2.66 0.00 3.55
371 372 3.488721 CCGTACTAATTGAGACCGGACAG 60.489 52.174 9.46 0.00 41.48 3.51
372 373 2.424601 CCGTACTAATTGAGACCGGACA 59.575 50.000 9.46 2.00 41.48 4.02
373 374 2.797439 GCCGTACTAATTGAGACCGGAC 60.797 54.545 9.46 0.10 41.48 4.79
374 375 1.406539 GCCGTACTAATTGAGACCGGA 59.593 52.381 9.46 0.00 41.48 5.14
375 376 1.537562 GGCCGTACTAATTGAGACCGG 60.538 57.143 0.00 0.00 41.70 5.28
376 377 1.407979 AGGCCGTACTAATTGAGACCG 59.592 52.381 0.00 0.00 0.00 4.79
377 378 3.538634 AAGGCCGTACTAATTGAGACC 57.461 47.619 0.00 0.00 0.00 3.85
378 379 3.063588 GCAAAGGCCGTACTAATTGAGAC 59.936 47.826 0.00 0.00 0.00 3.36
379 380 3.267483 GCAAAGGCCGTACTAATTGAGA 58.733 45.455 0.00 0.00 0.00 3.27
380 381 3.006940 TGCAAAGGCCGTACTAATTGAG 58.993 45.455 0.00 0.00 40.13 3.02
381 382 3.060736 TGCAAAGGCCGTACTAATTGA 57.939 42.857 0.00 0.00 40.13 2.57
382 383 3.694734 CATGCAAAGGCCGTACTAATTG 58.305 45.455 0.00 0.00 40.13 2.32
383 384 2.099098 GCATGCAAAGGCCGTACTAATT 59.901 45.455 14.21 0.00 40.13 1.40
384 385 1.676006 GCATGCAAAGGCCGTACTAAT 59.324 47.619 14.21 0.00 40.13 1.73
385 386 1.091537 GCATGCAAAGGCCGTACTAA 58.908 50.000 14.21 0.00 40.13 2.24
386 387 0.746563 GGCATGCAAAGGCCGTACTA 60.747 55.000 21.36 0.00 40.93 1.82
387 388 2.046285 GGCATGCAAAGGCCGTACT 61.046 57.895 21.36 0.00 40.93 2.73
388 389 2.489751 GGCATGCAAAGGCCGTAC 59.510 61.111 21.36 0.00 40.93 3.67
435 436 7.010552 GTCACGAAATACTCCTTACTACTCGTA 59.989 40.741 0.00 0.00 35.44 3.43
436 437 5.877012 TCACGAAATACTCCTTACTACTCGT 59.123 40.000 0.00 0.00 37.48 4.18
437 438 6.190962 GTCACGAAATACTCCTTACTACTCG 58.809 44.000 0.00 0.00 0.00 4.18
438 439 6.190962 CGTCACGAAATACTCCTTACTACTC 58.809 44.000 0.00 0.00 0.00 2.59
439 440 5.448360 GCGTCACGAAATACTCCTTACTACT 60.448 44.000 0.00 0.00 0.00 2.57
440 441 4.732442 GCGTCACGAAATACTCCTTACTAC 59.268 45.833 0.00 0.00 0.00 2.73
461 462 1.959899 GACTCTGGATGCACAACGCG 61.960 60.000 3.53 3.53 46.97 6.01
462 463 1.639298 GGACTCTGGATGCACAACGC 61.639 60.000 0.00 0.00 42.89 4.84
463 464 1.354337 CGGACTCTGGATGCACAACG 61.354 60.000 0.00 0.00 0.00 4.10
464 465 1.021390 CCGGACTCTGGATGCACAAC 61.021 60.000 0.00 0.00 0.00 3.32
465 466 1.296392 CCGGACTCTGGATGCACAA 59.704 57.895 0.00 0.00 0.00 3.33
466 467 1.480212 AACCGGACTCTGGATGCACA 61.480 55.000 9.46 0.00 0.00 4.57
467 468 0.741221 GAACCGGACTCTGGATGCAC 60.741 60.000 9.46 0.00 0.00 4.57
468 469 1.596934 GAACCGGACTCTGGATGCA 59.403 57.895 9.46 0.00 0.00 3.96
469 470 1.519455 CGAACCGGACTCTGGATGC 60.519 63.158 9.46 0.00 0.00 3.91
470 471 1.100510 TACGAACCGGACTCTGGATG 58.899 55.000 9.46 2.54 0.00 3.51
471 472 1.843368 TTACGAACCGGACTCTGGAT 58.157 50.000 9.46 0.00 0.00 3.41
472 473 1.475280 CATTACGAACCGGACTCTGGA 59.525 52.381 9.46 0.00 0.00 3.86
473 474 1.922570 CATTACGAACCGGACTCTGG 58.077 55.000 9.46 1.90 0.00 3.86
474 475 1.278238 GCATTACGAACCGGACTCTG 58.722 55.000 9.46 3.72 0.00 3.35
475 476 0.892755 TGCATTACGAACCGGACTCT 59.107 50.000 9.46 0.00 0.00 3.24
476 477 1.593006 CATGCATTACGAACCGGACTC 59.407 52.381 9.46 2.86 0.00 3.36
477 478 1.206132 TCATGCATTACGAACCGGACT 59.794 47.619 9.46 0.00 0.00 3.85
478 479 1.647346 TCATGCATTACGAACCGGAC 58.353 50.000 9.46 0.00 0.00 4.79
479 480 2.102420 AGATCATGCATTACGAACCGGA 59.898 45.455 9.46 0.00 0.00 5.14
480 481 2.483876 AGATCATGCATTACGAACCGG 58.516 47.619 0.00 0.00 0.00 5.28
481 482 4.299155 AGTAGATCATGCATTACGAACCG 58.701 43.478 0.00 0.00 0.00 4.44
482 483 6.145696 GGTAAGTAGATCATGCATTACGAACC 59.854 42.308 0.00 6.86 0.00 3.62
483 484 6.924060 AGGTAAGTAGATCATGCATTACGAAC 59.076 38.462 0.00 1.50 0.00 3.95
484 485 7.050970 AGGTAAGTAGATCATGCATTACGAA 57.949 36.000 0.00 0.00 0.00 3.85
485 486 6.650427 AGGTAAGTAGATCATGCATTACGA 57.350 37.500 0.00 0.00 0.00 3.43
486 487 6.528423 GCTAGGTAAGTAGATCATGCATTACG 59.472 42.308 0.00 0.00 0.00 3.18
487 488 6.814146 GGCTAGGTAAGTAGATCATGCATTAC 59.186 42.308 0.00 0.00 0.00 1.89
488 489 6.496911 TGGCTAGGTAAGTAGATCATGCATTA 59.503 38.462 0.00 0.00 0.00 1.90
489 490 5.307976 TGGCTAGGTAAGTAGATCATGCATT 59.692 40.000 0.00 0.00 0.00 3.56
490 491 4.840680 TGGCTAGGTAAGTAGATCATGCAT 59.159 41.667 0.00 0.00 0.00 3.96
491 492 4.223144 TGGCTAGGTAAGTAGATCATGCA 58.777 43.478 0.00 0.00 0.00 3.96
492 493 4.815269 CTGGCTAGGTAAGTAGATCATGC 58.185 47.826 0.00 0.00 0.00 4.06
493 494 4.526262 AGCTGGCTAGGTAAGTAGATCATG 59.474 45.833 0.00 0.00 31.69 3.07
494 495 4.746466 AGCTGGCTAGGTAAGTAGATCAT 58.254 43.478 0.00 0.00 31.69 2.45
495 496 4.145807 GAGCTGGCTAGGTAAGTAGATCA 58.854 47.826 0.21 0.00 34.13 2.92
496 497 4.145807 TGAGCTGGCTAGGTAAGTAGATC 58.854 47.826 0.21 0.00 34.13 2.75
497 498 4.186077 TGAGCTGGCTAGGTAAGTAGAT 57.814 45.455 0.21 0.00 34.13 1.98
498 499 3.664551 TGAGCTGGCTAGGTAAGTAGA 57.335 47.619 0.21 0.00 34.13 2.59
499 500 4.946478 ATTGAGCTGGCTAGGTAAGTAG 57.054 45.455 0.21 0.00 34.13 2.57
500 501 6.383147 ACTTTATTGAGCTGGCTAGGTAAGTA 59.617 38.462 11.30 0.00 34.13 2.24
501 502 5.189934 ACTTTATTGAGCTGGCTAGGTAAGT 59.810 40.000 0.21 5.18 34.13 2.24
502 503 5.675538 ACTTTATTGAGCTGGCTAGGTAAG 58.324 41.667 0.21 4.51 34.13 2.34
503 504 5.693769 ACTTTATTGAGCTGGCTAGGTAA 57.306 39.130 0.21 0.00 34.13 2.85
506 507 4.816925 GGTTACTTTATTGAGCTGGCTAGG 59.183 45.833 0.00 0.00 0.00 3.02
524 525 1.004679 TTCTTGGTCCGCCGGTTAC 60.005 57.895 1.63 0.00 37.67 2.50
527 528 4.699522 GCTTCTTGGTCCGCCGGT 62.700 66.667 1.63 0.00 37.67 5.28
533 534 1.201429 TCTCCCTGGCTTCTTGGTCC 61.201 60.000 0.00 0.00 0.00 4.46
540 541 0.103937 CGATCTGTCTCCCTGGCTTC 59.896 60.000 0.00 0.00 0.00 3.86
541 542 0.324738 TCGATCTGTCTCCCTGGCTT 60.325 55.000 0.00 0.00 0.00 4.35
542 543 0.105760 ATCGATCTGTCTCCCTGGCT 60.106 55.000 0.00 0.00 0.00 4.75
545 546 1.265635 GTCGATCGATCTGTCTCCCTG 59.734 57.143 22.50 4.50 0.00 4.45
551 552 0.318275 GCTGGGTCGATCGATCTGTC 60.318 60.000 26.40 11.78 0.00 3.51
569 570 1.315690 CATCACCAGGACCATGATGC 58.684 55.000 16.17 0.00 42.27 3.91
580 583 1.043116 TCGGGTAGCTCCATCACCAG 61.043 60.000 5.02 0.94 38.11 4.00
735 741 1.816074 GGTGGCCGTTGAAGTTGATA 58.184 50.000 0.00 0.00 0.00 2.15
754 760 1.226156 CGAAGAGCTCCGTGAGACG 60.226 63.158 10.93 2.49 42.11 4.18
996 1010 0.734889 CGGCAGGGTCAAACATGATC 59.265 55.000 0.00 0.00 0.00 2.92
1055 1069 1.600023 CAGTGTTTCCCGCCTGTAAA 58.400 50.000 0.00 0.00 0.00 2.01
1792 1828 8.158169 TCCAATAATGTCAACATATTCTCTGC 57.842 34.615 0.00 0.00 35.10 4.26
1935 1971 1.519408 TTACCGCCTTCAGCAAACTC 58.481 50.000 0.00 0.00 44.04 3.01
1936 1972 1.975660 TTTACCGCCTTCAGCAAACT 58.024 45.000 0.00 0.00 44.04 2.66
2013 2049 4.571984 CCATGACACGCTTCTGAATCAATA 59.428 41.667 0.00 0.00 0.00 1.90
2197 2236 6.149308 TGTCGAGATTTGTGAAGCAATATTGT 59.851 34.615 16.61 0.00 36.89 2.71
2325 2366 4.320870 GGGACACATTTCGACCTAGAAAA 58.679 43.478 0.00 0.00 42.52 2.29
2335 2376 0.309302 TTTGCACGGGACACATTTCG 59.691 50.000 0.00 0.00 0.00 3.46
2348 2390 6.201615 TGAATACTCTCATCATCGATTTGCAC 59.798 38.462 0.00 0.00 0.00 4.57
2351 2393 6.927936 AGGTGAATACTCTCATCATCGATTTG 59.072 38.462 0.00 0.00 29.52 2.32
2358 2400 9.722184 CAAATGATAGGTGAATACTCTCATCAT 57.278 33.333 0.00 0.00 0.00 2.45
2414 2459 5.248640 TCCATGGAGAAGCTTTTTCAGTAG 58.751 41.667 11.44 0.00 0.00 2.57
2425 2470 1.203287 GCCAGTTTTCCATGGAGAAGC 59.797 52.381 17.64 13.75 39.02 3.86
2452 2497 4.927782 TTGCTGTCGTGGCGCCTT 62.928 61.111 29.70 0.00 0.00 4.35
2456 2501 4.059459 GACGTTGCTGTCGTGGCG 62.059 66.667 6.19 0.00 41.64 5.69
2462 2507 1.149361 TTGTGGTCGACGTTGCTGTC 61.149 55.000 9.92 0.00 35.49 3.51
2466 2511 1.828331 GAGGTTGTGGTCGACGTTGC 61.828 60.000 9.92 0.00 0.00 4.17
2471 2516 1.663702 CGTGGAGGTTGTGGTCGAC 60.664 63.158 7.13 7.13 0.00 4.20
2565 2610 4.087892 AGCAGCCGTAGCCAGTGG 62.088 66.667 4.20 4.20 41.25 4.00
2588 2633 3.803162 GAGAGGGCCTTGGCTCCC 61.803 72.222 7.89 3.36 42.94 4.30
2603 2648 0.841961 TCCTTCCTGGATGCATGGAG 59.158 55.000 2.46 0.00 40.56 3.86
2610 2655 2.203126 GCGCCTCCTTCCTGGATG 60.203 66.667 0.00 0.00 45.16 3.51
2611 2656 3.483869 GGCGCCTCCTTCCTGGAT 61.484 66.667 22.15 0.00 45.16 3.41
2612 2657 2.889521 TATGGCGCCTCCTTCCTGGA 62.890 60.000 29.70 2.45 43.86 3.86
2630 2675 0.616395 TGAAGGTGAGGGCGGTGATA 60.616 55.000 0.00 0.00 0.00 2.15
2631 2676 1.274703 ATGAAGGTGAGGGCGGTGAT 61.275 55.000 0.00 0.00 0.00 3.06
2634 2679 2.990479 GATGAAGGTGAGGGCGGT 59.010 61.111 0.00 0.00 0.00 5.68
2641 2686 3.030168 ATGGCCGCGATGAAGGTGA 62.030 57.895 8.23 0.00 0.00 4.02
2658 2703 0.957395 CTTCTTCAGCGTGGGTGCAT 60.957 55.000 0.00 0.00 37.31 3.96
2688 2733 2.203549 CTCTCCCTTCCCCTTGCCAC 62.204 65.000 0.00 0.00 0.00 5.01
2693 2738 1.398234 CTCCCTCTCCCTTCCCCTT 59.602 63.158 0.00 0.00 0.00 3.95
2694 2739 2.652113 CCTCCCTCTCCCTTCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
2717 2762 4.539083 TGGCACCGTCACAGCGTT 62.539 61.111 0.00 0.00 0.00 4.84
2763 2808 8.043710 AGTTTAACTAGTGAGGATTTCTCCATG 58.956 37.037 0.00 0.00 44.79 3.66
2764 2809 8.043710 CAGTTTAACTAGTGAGGATTTCTCCAT 58.956 37.037 0.00 0.00 44.79 3.41
2767 2812 8.834749 AACAGTTTAACTAGTGAGGATTTCTC 57.165 34.615 0.00 0.00 42.74 2.87
2768 2813 9.274206 GAAACAGTTTAACTAGTGAGGATTTCT 57.726 33.333 0.00 0.00 0.00 2.52
2771 2816 9.220767 GATGAAACAGTTTAACTAGTGAGGATT 57.779 33.333 0.00 0.00 0.00 3.01
2772 2817 7.824779 GGATGAAACAGTTTAACTAGTGAGGAT 59.175 37.037 0.00 0.00 0.00 3.24
2773 2818 7.159372 GGATGAAACAGTTTAACTAGTGAGGA 58.841 38.462 0.00 0.00 0.00 3.71
2774 2819 6.090898 CGGATGAAACAGTTTAACTAGTGAGG 59.909 42.308 0.00 0.00 0.00 3.86
2775 2820 6.401153 GCGGATGAAACAGTTTAACTAGTGAG 60.401 42.308 0.00 0.00 0.00 3.51
2776 2821 5.407387 GCGGATGAAACAGTTTAACTAGTGA 59.593 40.000 0.00 0.00 0.00 3.41
2777 2822 5.178623 TGCGGATGAAACAGTTTAACTAGTG 59.821 40.000 0.00 0.00 0.00 2.74
2778 2823 5.302360 TGCGGATGAAACAGTTTAACTAGT 58.698 37.500 0.00 0.00 0.00 2.57
2788 3121 6.200665 TCAAAAGAAATTTGCGGATGAAACAG 59.799 34.615 0.00 0.00 46.53 3.16
2840 3173 1.691196 ACCAAGCTAACAAGCTGCAA 58.309 45.000 1.02 0.00 45.54 4.08
2850 3183 1.068434 GCCAAACTGCAACCAAGCTAA 59.932 47.619 0.00 0.00 34.99 3.09
2887 3220 5.647658 TGGACTAAACAGAACAATGGCTATG 59.352 40.000 0.00 0.00 0.00 2.23
2909 3242 5.452078 TGCTTTGTGAGGTTTAATTCTGG 57.548 39.130 0.00 0.00 0.00 3.86
2970 3303 7.868775 TGCTCAGAGTAAATTTGATGATATGC 58.131 34.615 0.00 1.48 0.00 3.14
2979 3312 6.492007 ACACAGATGCTCAGAGTAAATTTG 57.508 37.500 0.00 0.03 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.