Multiple sequence alignment - TraesCS2D01G589400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G589400 chr2D 100.000 3737 0 0 1 3737 645931559 645935295 0.000000e+00 6902.0
1 TraesCS2D01G589400 chr2D 86.555 238 32 0 1831 2068 645947875 645948112 2.860000e-66 263.0
2 TraesCS2D01G589400 chr2D 89.683 126 12 1 386 510 645893139 645893264 3.860000e-35 159.0
3 TraesCS2D01G589400 chr2A 93.386 2147 127 7 1597 3737 771679128 771681265 0.000000e+00 3164.0
4 TraesCS2D01G589400 chr2A 85.464 571 68 11 294 852 771676783 771677350 6.960000e-162 580.0
5 TraesCS2D01G589400 chr2A 88.798 366 36 4 714 1076 771551007 771551370 9.520000e-121 444.0
6 TraesCS2D01G589400 chr2A 82.153 353 50 9 1817 2167 771547108 771547449 1.310000e-74 291.0
7 TraesCS2D01G589400 chr2A 86.192 239 33 0 1830 2068 771712927 771713165 3.700000e-65 259.0
8 TraesCS2D01G589400 chr2A 86.404 228 26 5 3513 3737 139921734 139921959 1.040000e-60 244.0
9 TraesCS2D01G589400 chr2A 87.379 103 12 1 423 524 771609290 771609392 2.360000e-22 117.0
10 TraesCS2D01G589400 chr2B 93.256 1542 76 11 1569 3102 789609933 789608412 0.000000e+00 2246.0
11 TraesCS2D01G589400 chr2B 90.825 1297 91 16 2190 3466 789616500 789615212 0.000000e+00 1711.0
12 TraesCS2D01G589400 chr2B 87.824 1002 93 16 294 1281 789611584 789610598 0.000000e+00 1147.0
13 TraesCS2D01G589400 chr2B 84.420 1104 133 18 7 1079 789620941 789619846 0.000000e+00 1050.0
14 TraesCS2D01G589400 chr2B 91.441 479 31 6 1713 2183 789618136 789617660 0.000000e+00 649.0
15 TraesCS2D01G589400 chr2B 91.489 282 19 3 1292 1572 789610511 789610234 2.110000e-102 383.0
16 TraesCS2D01G589400 chr2B 87.137 241 31 0 1831 2071 789602085 789601845 1.320000e-69 274.0
17 TraesCS2D01G589400 chr2B 80.000 90 18 0 2993 3082 59257738 59257827 2.410000e-07 67.6
18 TraesCS2D01G589400 chr5D 83.696 368 50 10 3141 3505 240506930 240506570 4.620000e-89 339.0
19 TraesCS2D01G589400 chr5D 85.841 226 29 3 3514 3737 67572370 67572146 1.730000e-58 237.0
20 TraesCS2D01G589400 chr5B 82.143 364 55 10 3142 3503 263218742 263219097 1.690000e-78 303.0
21 TraesCS2D01G589400 chr5B 86.937 222 24 5 3519 3737 45552792 45553011 1.040000e-60 244.0
22 TraesCS2D01G589400 chr5B 86.283 226 27 4 3514 3737 635258641 635258864 3.730000e-60 243.0
23 TraesCS2D01G589400 chr5A 83.540 322 43 9 3141 3458 313310130 313310445 3.650000e-75 292.0
24 TraesCS2D01G589400 chr5A 85.965 228 26 6 3514 3737 45751457 45751232 4.820000e-59 239.0
25 TraesCS2D01G589400 chr4A 87.665 227 23 5 3514 3737 601790531 601790307 3.700000e-65 259.0
26 TraesCS2D01G589400 chr7D 85.965 228 26 6 3513 3737 73143482 73143706 4.820000e-59 239.0
27 TraesCS2D01G589400 chr4D 85.841 226 29 3 3514 3737 101499097 101498873 1.730000e-58 237.0
28 TraesCS2D01G589400 chr3A 81.172 239 32 9 2854 3087 710868731 710868961 2.970000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G589400 chr2D 645931559 645935295 3736 False 6902.000000 6902 100.000000 1 3737 1 chr2D.!!$F2 3736
1 TraesCS2D01G589400 chr2A 771676783 771681265 4482 False 1872.000000 3164 89.425000 294 3737 2 chr2A.!!$F5 3443
2 TraesCS2D01G589400 chr2A 771547108 771551370 4262 False 367.500000 444 85.475500 714 2167 2 chr2A.!!$F4 1453
3 TraesCS2D01G589400 chr2B 789608412 789620941 12529 True 1197.666667 2246 89.875833 7 3466 6 chr2B.!!$R2 3459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 677 0.296642 CGTTTTTCCGCGATCTACCG 59.703 55.0 8.23 0.0 0.00 4.02 F
1666 3077 0.036105 TGTCAGGCTGGCATACACAG 60.036 55.0 19.55 0.0 38.95 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 3212 0.180406 GTTGTCGGCCATGGAGGTAT 59.82 55.0 18.4 0.0 40.61 2.73 R
3660 14531 0.600255 AAGTCACCAAAGGCGTCTCG 60.60 55.0 0.0 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.425162 AGGATCAACTTTCCACCTGTC 57.575 47.619 0.00 0.00 35.59 3.51
72 73 2.076863 GGATCAACTTTCCACCTGTCG 58.923 52.381 0.00 0.00 33.21 4.35
111 117 6.793505 ACCGGTCTAATCAAGTCTCTAATT 57.206 37.500 0.00 0.00 0.00 1.40
117 123 7.142680 GTCTAATCAAGTCTCTAATTCCTCCG 58.857 42.308 0.00 0.00 0.00 4.63
139 145 7.367285 TCCGTTTCCAAATATTTGAAGTTCTG 58.633 34.615 26.32 10.16 40.55 3.02
142 148 7.647715 CGTTTCCAAATATTTGAAGTTCTGTGT 59.352 33.333 26.32 0.00 40.55 3.72
146 152 8.474025 TCCAAATATTTGAAGTTCTGTGTTTGT 58.526 29.630 26.32 0.00 40.55 2.83
157 173 7.816945 AGTTCTGTGTTTGTCAAATTTCTTG 57.183 32.000 0.40 0.00 0.00 3.02
189 212 7.784176 AGAATATACAACATATTGAACGACGC 58.216 34.615 0.00 0.00 39.30 5.19
197 220 2.634982 ATTGAACGACGCATGCATTT 57.365 40.000 19.57 4.08 0.00 2.32
206 229 1.811965 ACGCATGCATTTGCTACTTGA 59.188 42.857 19.57 0.00 40.54 3.02
220 243 7.618502 TTGCTACTTGAAACTGTGAAGTTAA 57.381 32.000 5.70 0.00 32.27 2.01
221 244 7.011828 TGCTACTTGAAACTGTGAAGTTAAC 57.988 36.000 0.00 0.00 32.27 2.01
223 246 7.119992 TGCTACTTGAAACTGTGAAGTTAACAA 59.880 33.333 8.61 9.25 32.27 2.83
227 250 9.705290 ACTTGAAACTGTGAAGTTAACAATTTT 57.295 25.926 8.61 1.15 27.99 1.82
271 294 7.133513 CCAAACAGATACTATCTACGTCTGTC 58.866 42.308 6.77 0.00 46.24 3.51
338 361 4.046286 TCCAAGGGAACAAGCACATAAT 57.954 40.909 0.00 0.00 0.00 1.28
363 386 0.515127 TGCACGGCACAAGTATTTCG 59.485 50.000 0.00 0.00 31.71 3.46
425 448 8.015185 AGAATATTAAGCGTTAGACTGGGTAA 57.985 34.615 0.00 0.00 0.00 2.85
441 464 3.113260 GGTAACCTTCCCTGATCGATG 57.887 52.381 0.54 0.00 0.00 3.84
442 465 2.434702 GGTAACCTTCCCTGATCGATGT 59.565 50.000 0.54 0.00 0.00 3.06
445 468 4.837093 AACCTTCCCTGATCGATGTTTA 57.163 40.909 0.54 0.00 0.00 2.01
446 469 4.138487 ACCTTCCCTGATCGATGTTTAC 57.862 45.455 0.54 0.00 0.00 2.01
447 470 3.775316 ACCTTCCCTGATCGATGTTTACT 59.225 43.478 0.54 0.00 0.00 2.24
466 492 7.754924 TGTTTACTTTTCTCTGCTTGTTGAAAG 59.245 33.333 0.00 0.00 31.37 2.62
511 537 0.521735 CAGCCATGATGCCATCGATG 59.478 55.000 18.76 18.76 0.00 3.84
512 538 0.399075 AGCCATGATGCCATCGATGA 59.601 50.000 26.86 8.19 0.00 2.92
576 603 6.038356 CCTCTCATCTGCGCAAAAATTAAAT 58.962 36.000 13.05 0.00 0.00 1.40
579 606 6.251163 TCTCATCTGCGCAAAAATTAAATTCG 59.749 34.615 13.05 0.00 0.00 3.34
614 645 3.082165 TCGACTAGAGAGCCTTCCG 57.918 57.895 0.00 0.00 0.00 4.30
618 649 1.673920 GACTAGAGAGCCTTCCGTGAG 59.326 57.143 0.00 0.00 0.00 3.51
619 650 1.282447 ACTAGAGAGCCTTCCGTGAGA 59.718 52.381 0.00 0.00 0.00 3.27
626 659 1.213013 CCTTCCGTGAGACTGTCCG 59.787 63.158 3.76 1.04 0.00 4.79
634 667 1.525619 GTGAGACTGTCCGTTTTTCCG 59.474 52.381 3.76 0.00 0.00 4.30
644 677 0.296642 CGTTTTTCCGCGATCTACCG 59.703 55.000 8.23 0.00 0.00 4.02
658 691 1.977854 TCTACCGCTATGGCCATGATT 59.022 47.619 29.04 4.91 43.94 2.57
661 694 0.538057 CCGCTATGGCCATGATTGGT 60.538 55.000 29.04 2.72 45.57 3.67
674 707 3.687321 ATTGGTGCGCGAGATGGCT 62.687 57.895 12.10 0.00 0.00 4.75
694 727 2.676632 TTAAATGGCTTAGCGGTCGA 57.323 45.000 0.00 0.00 0.00 4.20
700 733 3.048941 GCTTAGCGGTCGAGGTCGT 62.049 63.158 0.00 0.00 40.80 4.34
702 735 0.522915 CTTAGCGGTCGAGGTCGTTC 60.523 60.000 0.00 0.00 40.80 3.95
710 743 1.730612 GTCGAGGTCGTTCCAATTTCC 59.269 52.381 0.00 0.00 40.80 3.13
711 744 1.084289 CGAGGTCGTTCCAATTTCCC 58.916 55.000 0.00 0.00 39.02 3.97
717 750 1.004979 TCGTTCCAATTTCCCGGGAAT 59.995 47.619 35.93 20.35 42.25 3.01
729 762 0.740737 CCGGGAATGGCTCATTTCAC 59.259 55.000 0.00 0.00 33.90 3.18
730 763 0.378257 CGGGAATGGCTCATTTCACG 59.622 55.000 8.05 4.31 33.90 4.35
738 772 1.982073 GCTCATTTCACGGGCCGAAG 61.982 60.000 35.78 23.99 0.00 3.79
756 790 2.054453 GCAGGGGGCCAGACAAATC 61.054 63.158 4.39 0.00 36.11 2.17
806 840 3.138468 ACTGGTCAAGGAAACCTAGCTTT 59.862 43.478 0.00 0.00 37.69 3.51
835 869 1.344906 CCCATTCCCTTCTCTCCCTCT 60.345 57.143 0.00 0.00 0.00 3.69
852 886 1.061711 CTCTCATCCGAAAAGCTTGCG 59.938 52.381 13.33 13.33 0.00 4.85
855 889 1.971167 ATCCGAAAAGCTTGCGGCA 60.971 52.632 27.26 19.23 44.45 5.69
875 909 4.724602 TCGACGGCTCAGCACAGC 62.725 66.667 0.00 0.00 38.84 4.40
902 936 4.038080 CAGGCCGGCGGTTGTTTC 62.038 66.667 28.82 9.28 0.00 2.78
980 1014 3.357079 CAGGCTGCGACCCACAAC 61.357 66.667 0.00 0.00 0.00 3.32
981 1015 3.872603 AGGCTGCGACCCACAACA 61.873 61.111 0.00 0.00 0.00 3.33
1028 1062 2.359975 GCCGGTTCCAACTCCCAG 60.360 66.667 1.90 0.00 0.00 4.45
1036 1070 1.741028 TCCAACTCCCAGTCCATCAA 58.259 50.000 0.00 0.00 0.00 2.57
1043 1077 0.679002 CCCAGTCCATCAACAGCAGG 60.679 60.000 0.00 0.00 0.00 4.85
1052 1086 1.604604 TCAACAGCAGGTAAAGGCAC 58.395 50.000 0.00 0.00 0.00 5.01
1061 1095 1.275573 AGGTAAAGGCACGTTCCTCTC 59.724 52.381 7.36 1.14 34.82 3.20
1068 1102 1.444553 CACGTTCCTCTCTGTCCGC 60.445 63.158 0.00 0.00 0.00 5.54
1071 1105 0.456995 CGTTCCTCTCTGTCCGCTTC 60.457 60.000 0.00 0.00 0.00 3.86
1072 1106 0.108567 GTTCCTCTCTGTCCGCTTCC 60.109 60.000 0.00 0.00 0.00 3.46
1073 1107 0.251832 TTCCTCTCTGTCCGCTTCCT 60.252 55.000 0.00 0.00 0.00 3.36
1074 1108 0.967887 TCCTCTCTGTCCGCTTCCTG 60.968 60.000 0.00 0.00 0.00 3.86
1075 1109 0.967887 CCTCTCTGTCCGCTTCCTGA 60.968 60.000 0.00 0.00 0.00 3.86
1076 1110 0.891373 CTCTCTGTCCGCTTCCTGAA 59.109 55.000 0.00 0.00 0.00 3.02
1077 1111 1.480137 CTCTCTGTCCGCTTCCTGAAT 59.520 52.381 0.00 0.00 0.00 2.57
1078 1112 1.478510 TCTCTGTCCGCTTCCTGAATC 59.521 52.381 0.00 0.00 0.00 2.52
1102 1136 7.782049 TCCTGATTCAGTAACAATAGTACTGG 58.218 38.462 12.54 0.00 40.97 4.00
1107 1141 7.770366 TTCAGTAACAATAGTACTGGACTCA 57.230 36.000 5.39 0.00 40.97 3.41
1108 1142 7.770366 TCAGTAACAATAGTACTGGACTCAA 57.230 36.000 5.39 0.00 40.97 3.02
1109 1143 7.600065 TCAGTAACAATAGTACTGGACTCAAC 58.400 38.462 5.39 0.00 40.97 3.18
1110 1144 7.231925 TCAGTAACAATAGTACTGGACTCAACA 59.768 37.037 5.39 0.00 40.97 3.33
1111 1145 8.035394 CAGTAACAATAGTACTGGACTCAACAT 58.965 37.037 5.39 0.00 39.81 2.71
1113 1147 9.216117 GTAACAATAGTACTGGACTCAACATTT 57.784 33.333 5.39 0.00 39.81 2.32
1114 1148 8.691661 AACAATAGTACTGGACTCAACATTTT 57.308 30.769 5.39 0.00 39.81 1.82
1115 1149 8.324163 ACAATAGTACTGGACTCAACATTTTC 57.676 34.615 5.39 0.00 39.81 2.29
1116 1150 7.390718 ACAATAGTACTGGACTCAACATTTTCC 59.609 37.037 5.39 0.00 39.81 3.13
1117 1151 5.568620 AGTACTGGACTCAACATTTTCCT 57.431 39.130 0.00 0.00 29.95 3.36
1118 1152 5.308825 AGTACTGGACTCAACATTTTCCTG 58.691 41.667 0.00 0.00 29.95 3.86
1119 1153 4.170468 ACTGGACTCAACATTTTCCTGT 57.830 40.909 0.00 0.00 35.96 4.00
1121 1155 5.880901 ACTGGACTCAACATTTTCCTGTAT 58.119 37.500 0.00 0.00 38.23 2.29
1123 1157 5.009631 TGGACTCAACATTTTCCTGTATGG 58.990 41.667 0.00 0.00 37.10 2.74
1126 1160 5.630121 ACTCAACATTTTCCTGTATGGACA 58.370 37.500 0.00 0.00 46.14 4.02
1127 1161 6.068010 ACTCAACATTTTCCTGTATGGACAA 58.932 36.000 0.00 0.00 46.14 3.18
1130 1164 7.432869 TCAACATTTTCCTGTATGGACAAAAG 58.567 34.615 0.00 0.00 46.14 2.27
1131 1165 6.345096 ACATTTTCCTGTATGGACAAAAGG 57.655 37.500 0.00 0.00 46.14 3.11
1132 1166 5.838521 ACATTTTCCTGTATGGACAAAAGGT 59.161 36.000 0.00 0.00 46.14 3.50
1134 1168 7.507616 ACATTTTCCTGTATGGACAAAAGGTTA 59.492 33.333 0.00 0.00 46.14 2.85
1135 1169 8.531146 CATTTTCCTGTATGGACAAAAGGTTAT 58.469 33.333 0.00 0.00 46.14 1.89
1136 1170 8.485578 TTTTCCTGTATGGACAAAAGGTTATT 57.514 30.769 0.00 0.00 46.14 1.40
1137 1171 7.461182 TTCCTGTATGGACAAAAGGTTATTG 57.539 36.000 0.00 0.00 46.14 1.90
1139 1173 5.418840 CCTGTATGGACAAAAGGTTATTGCT 59.581 40.000 0.00 0.00 38.35 3.91
1140 1174 6.601613 CCTGTATGGACAAAAGGTTATTGCTA 59.398 38.462 0.00 0.00 38.35 3.49
1141 1175 7.285401 CCTGTATGGACAAAAGGTTATTGCTAT 59.715 37.037 0.00 0.00 38.35 2.97
1149 1793 0.109723 GGTTATTGCTATCGGGGCCA 59.890 55.000 4.39 0.00 0.00 5.36
1150 1794 1.271926 GGTTATTGCTATCGGGGCCAT 60.272 52.381 4.39 0.00 0.00 4.40
1153 1797 1.719063 ATTGCTATCGGGGCCATGGT 61.719 55.000 14.67 0.00 0.00 3.55
1155 1799 2.431683 CTATCGGGGCCATGGTGG 59.568 66.667 14.67 0.24 41.55 4.61
1162 1806 1.984026 GGGCCATGGTGGGTTTGAG 60.984 63.158 14.67 0.00 38.19 3.02
1164 1808 1.076549 GCCATGGTGGGTTTGAGGA 59.923 57.895 14.67 0.00 38.19 3.71
1169 1813 2.053747 TGGTGGGTTTGAGGAGGTAT 57.946 50.000 0.00 0.00 0.00 2.73
1170 1814 2.354328 TGGTGGGTTTGAGGAGGTATT 58.646 47.619 0.00 0.00 0.00 1.89
1173 1817 1.638589 TGGGTTTGAGGAGGTATTGGG 59.361 52.381 0.00 0.00 0.00 4.12
1175 1819 1.639108 GGTTTGAGGAGGTATTGGGGT 59.361 52.381 0.00 0.00 0.00 4.95
1176 1820 2.620627 GGTTTGAGGAGGTATTGGGGTG 60.621 54.545 0.00 0.00 0.00 4.61
1179 1823 1.203376 TGAGGAGGTATTGGGGTGACA 60.203 52.381 0.00 0.00 0.00 3.58
1180 1824 1.486726 GAGGAGGTATTGGGGTGACAG 59.513 57.143 0.00 0.00 0.00 3.51
1181 1825 1.080498 AGGAGGTATTGGGGTGACAGA 59.920 52.381 0.00 0.00 0.00 3.41
1182 1826 1.913419 GGAGGTATTGGGGTGACAGAA 59.087 52.381 0.00 0.00 0.00 3.02
1184 1828 1.282157 AGGTATTGGGGTGACAGAAGC 59.718 52.381 0.00 0.00 0.00 3.86
1185 1829 1.282157 GGTATTGGGGTGACAGAAGCT 59.718 52.381 0.00 0.00 0.00 3.74
1186 1830 2.504175 GGTATTGGGGTGACAGAAGCTA 59.496 50.000 0.00 0.00 0.00 3.32
1187 1831 3.136626 GGTATTGGGGTGACAGAAGCTAT 59.863 47.826 0.00 0.00 0.00 2.97
1190 1834 2.551270 TGGGGTGACAGAAGCTATCTT 58.449 47.619 0.00 0.00 35.73 2.40
1199 1843 2.900716 GAAGCTATCTTCCGCCTTCT 57.099 50.000 0.00 0.00 42.18 2.85
1200 1844 2.749776 GAAGCTATCTTCCGCCTTCTC 58.250 52.381 0.00 0.00 42.18 2.87
1201 1845 2.080654 AGCTATCTTCCGCCTTCTCT 57.919 50.000 0.00 0.00 0.00 3.10
1203 1847 1.683917 GCTATCTTCCGCCTTCTCTGA 59.316 52.381 0.00 0.00 0.00 3.27
1204 1848 2.544903 GCTATCTTCCGCCTTCTCTGAC 60.545 54.545 0.00 0.00 0.00 3.51
1205 1849 1.561643 ATCTTCCGCCTTCTCTGACA 58.438 50.000 0.00 0.00 0.00 3.58
1206 1850 1.561643 TCTTCCGCCTTCTCTGACAT 58.438 50.000 0.00 0.00 0.00 3.06
1207 1851 1.478510 TCTTCCGCCTTCTCTGACATC 59.521 52.381 0.00 0.00 0.00 3.06
1208 1852 1.480137 CTTCCGCCTTCTCTGACATCT 59.520 52.381 0.00 0.00 0.00 2.90
1209 1853 1.561643 TCCGCCTTCTCTGACATCTT 58.438 50.000 0.00 0.00 0.00 2.40
1210 1854 1.205655 TCCGCCTTCTCTGACATCTTG 59.794 52.381 0.00 0.00 0.00 3.02
1211 1855 1.205655 CCGCCTTCTCTGACATCTTGA 59.794 52.381 0.00 0.00 0.00 3.02
1212 1856 2.158986 CCGCCTTCTCTGACATCTTGAT 60.159 50.000 0.00 0.00 0.00 2.57
1213 1857 3.068732 CCGCCTTCTCTGACATCTTGATA 59.931 47.826 0.00 0.00 0.00 2.15
1214 1858 4.297510 CGCCTTCTCTGACATCTTGATAG 58.702 47.826 0.00 0.00 0.00 2.08
1215 1859 4.630111 GCCTTCTCTGACATCTTGATAGG 58.370 47.826 0.00 0.00 0.00 2.57
1217 1861 4.040217 CCTTCTCTGACATCTTGATAGGGG 59.960 50.000 0.00 0.00 0.00 4.79
1218 1862 4.542906 TCTCTGACATCTTGATAGGGGA 57.457 45.455 0.00 0.00 0.00 4.81
1219 1863 5.085275 TCTCTGACATCTTGATAGGGGAT 57.915 43.478 0.00 0.00 0.00 3.85
1220 1864 5.471424 TCTCTGACATCTTGATAGGGGATT 58.529 41.667 0.00 0.00 0.00 3.01
1222 1866 6.495181 TCTCTGACATCTTGATAGGGGATTAC 59.505 42.308 0.00 0.00 0.00 1.89
1223 1867 5.544176 TCTGACATCTTGATAGGGGATTACC 59.456 44.000 0.00 0.00 39.11 2.85
1224 1868 4.283467 TGACATCTTGATAGGGGATTACCG 59.717 45.833 0.00 0.00 41.60 4.02
1225 1869 3.583086 ACATCTTGATAGGGGATTACCGG 59.417 47.826 0.00 0.00 41.60 5.28
1226 1870 3.623466 TCTTGATAGGGGATTACCGGA 57.377 47.619 9.46 0.00 41.60 5.14
1227 1871 3.507411 TCTTGATAGGGGATTACCGGAG 58.493 50.000 9.46 0.00 41.60 4.63
1228 1872 3.141460 TCTTGATAGGGGATTACCGGAGA 59.859 47.826 9.46 0.00 41.60 3.71
1229 1873 2.885616 TGATAGGGGATTACCGGAGAC 58.114 52.381 9.46 0.00 41.60 3.36
1230 1874 2.177734 GATAGGGGATTACCGGAGACC 58.822 57.143 9.46 5.78 41.60 3.85
1232 1876 1.759692 GGGGATTACCGGAGACCGT 60.760 63.158 9.46 0.00 46.80 4.83
1233 1877 1.738432 GGGATTACCGGAGACCGTC 59.262 63.158 9.46 0.00 46.80 4.79
1234 1878 0.754587 GGGATTACCGGAGACCGTCT 60.755 60.000 9.46 0.00 46.80 4.18
1235 1879 1.109609 GGATTACCGGAGACCGTCTT 58.890 55.000 9.46 0.00 46.80 3.01
1237 1881 2.689983 GGATTACCGGAGACCGTCTTTA 59.310 50.000 9.46 0.00 46.80 1.85
1238 1882 3.320256 GGATTACCGGAGACCGTCTTTAT 59.680 47.826 9.46 0.00 46.80 1.40
1240 1884 2.140839 ACCGGAGACCGTCTTTATCT 57.859 50.000 9.46 0.00 46.80 1.98
1241 1885 3.287867 ACCGGAGACCGTCTTTATCTA 57.712 47.619 9.46 0.00 46.80 1.98
1243 1887 2.032204 CCGGAGACCGTCTTTATCTACG 60.032 54.545 1.71 0.00 46.80 3.51
1244 1888 2.611292 CGGAGACCGTCTTTATCTACGT 59.389 50.000 1.71 0.00 41.08 3.57
1245 1889 3.064545 CGGAGACCGTCTTTATCTACGTT 59.935 47.826 1.71 0.00 41.08 3.99
1246 1890 4.596097 GGAGACCGTCTTTATCTACGTTC 58.404 47.826 1.71 0.00 37.40 3.95
1247 1891 4.095483 GGAGACCGTCTTTATCTACGTTCA 59.905 45.833 1.71 0.00 37.40 3.18
1248 1892 4.979388 AGACCGTCTTTATCTACGTTCAC 58.021 43.478 0.00 0.00 37.40 3.18
1250 1894 3.103738 CCGTCTTTATCTACGTTCACGG 58.896 50.000 4.07 0.00 44.95 4.94
1253 2397 3.129287 GTCTTTATCTACGTTCACGGGGA 59.871 47.826 4.07 1.96 44.95 4.81
1274 2418 3.463944 AGACCCTTAATTATCGTTGCCG 58.536 45.455 0.00 0.00 0.00 5.69
1283 2427 4.859400 TCGTTGCCGAAACCTGAA 57.141 50.000 0.00 0.00 40.86 3.02
1287 2431 1.662876 CGTTGCCGAAACCTGAATGTG 60.663 52.381 0.00 0.00 35.13 3.21
1289 2433 0.893270 TGCCGAAACCTGAATGTGGG 60.893 55.000 0.00 0.00 0.00 4.61
1290 2434 1.595093 GCCGAAACCTGAATGTGGGG 61.595 60.000 0.00 0.00 0.00 4.96
1291 2435 0.037590 CCGAAACCTGAATGTGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
1292 2436 1.453155 CGAAACCTGAATGTGGGGAG 58.547 55.000 0.00 0.00 0.00 4.30
1293 2437 1.177401 GAAACCTGAATGTGGGGAGC 58.823 55.000 0.00 0.00 0.00 4.70
1294 2438 0.482446 AAACCTGAATGTGGGGAGCA 59.518 50.000 0.00 0.00 0.00 4.26
1296 2440 0.251341 ACCTGAATGTGGGGAGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
1297 2441 0.038744 CCTGAATGTGGGGAGCAACT 59.961 55.000 0.00 0.00 0.00 3.16
1298 2442 1.171308 CTGAATGTGGGGAGCAACTG 58.829 55.000 0.00 0.00 0.00 3.16
1299 2443 0.478072 TGAATGTGGGGAGCAACTGT 59.522 50.000 0.00 0.00 0.00 3.55
1300 2444 0.883833 GAATGTGGGGAGCAACTGTG 59.116 55.000 0.00 0.00 0.00 3.66
1301 2445 0.478072 AATGTGGGGAGCAACTGTGA 59.522 50.000 0.00 0.00 0.00 3.58
1302 2446 0.700564 ATGTGGGGAGCAACTGTGAT 59.299 50.000 0.00 0.00 0.00 3.06
1303 2447 0.250858 TGTGGGGAGCAACTGTGATG 60.251 55.000 0.00 0.00 0.00 3.07
1304 2448 0.036732 GTGGGGAGCAACTGTGATGA 59.963 55.000 0.00 0.00 0.00 2.92
1305 2449 0.036732 TGGGGAGCAACTGTGATGAC 59.963 55.000 0.00 0.00 0.00 3.06
1307 2451 1.271597 GGGGAGCAACTGTGATGACTT 60.272 52.381 0.00 0.00 0.00 3.01
1308 2452 2.027192 GGGGAGCAACTGTGATGACTTA 60.027 50.000 0.00 0.00 0.00 2.24
1310 2454 3.624861 GGGAGCAACTGTGATGACTTATG 59.375 47.826 0.00 0.00 0.00 1.90
1311 2455 4.256920 GGAGCAACTGTGATGACTTATGT 58.743 43.478 0.00 0.00 0.00 2.29
1313 2457 4.898320 AGCAACTGTGATGACTTATGTGA 58.102 39.130 0.00 0.00 0.00 3.58
1314 2458 5.494724 AGCAACTGTGATGACTTATGTGAT 58.505 37.500 0.00 0.00 0.00 3.06
1315 2459 6.643388 AGCAACTGTGATGACTTATGTGATA 58.357 36.000 0.00 0.00 0.00 2.15
1317 2461 7.226128 AGCAACTGTGATGACTTATGTGATATG 59.774 37.037 0.00 0.00 0.00 1.78
1319 2463 8.333186 CAACTGTGATGACTTATGTGATATGTG 58.667 37.037 0.00 0.00 0.00 3.21
1320 2464 6.988580 ACTGTGATGACTTATGTGATATGTGG 59.011 38.462 0.00 0.00 0.00 4.17
1321 2465 5.759763 TGTGATGACTTATGTGATATGTGGC 59.240 40.000 0.00 0.00 0.00 5.01
1322 2466 5.180117 GTGATGACTTATGTGATATGTGGCC 59.820 44.000 0.00 0.00 0.00 5.36
1323 2467 3.727726 TGACTTATGTGATATGTGGCCG 58.272 45.455 0.00 0.00 0.00 6.13
1324 2468 2.480419 GACTTATGTGATATGTGGCCGC 59.520 50.000 10.11 10.11 0.00 6.53
1325 2469 2.104792 ACTTATGTGATATGTGGCCGCT 59.895 45.455 18.96 5.67 0.00 5.52
1326 2470 2.168326 TATGTGATATGTGGCCGCTG 57.832 50.000 18.96 0.00 0.00 5.18
1327 2471 1.168407 ATGTGATATGTGGCCGCTGC 61.168 55.000 18.96 4.66 0.00 5.25
1328 2472 1.819208 GTGATATGTGGCCGCTGCA 60.819 57.895 18.96 7.33 40.13 4.41
1330 2474 1.167781 TGATATGTGGCCGCTGCATG 61.168 55.000 18.96 0.00 40.13 4.06
1331 2475 1.152902 ATATGTGGCCGCTGCATGT 60.153 52.632 18.96 5.42 40.13 3.21
1332 2476 0.108396 ATATGTGGCCGCTGCATGTA 59.892 50.000 18.96 0.00 40.13 2.29
1334 2478 1.168407 ATGTGGCCGCTGCATGTATC 61.168 55.000 18.96 0.00 40.13 2.24
1337 2481 2.546494 GGCCGCTGCATGTATCCAC 61.546 63.158 1.55 0.00 40.13 4.02
1338 2482 2.885676 GCCGCTGCATGTATCCACG 61.886 63.158 0.00 0.00 37.47 4.94
1342 2486 1.721389 CGCTGCATGTATCCACGTATC 59.279 52.381 0.00 0.00 0.00 2.24
1343 2487 2.608016 CGCTGCATGTATCCACGTATCT 60.608 50.000 0.00 0.00 0.00 1.98
1344 2488 3.365969 CGCTGCATGTATCCACGTATCTA 60.366 47.826 0.00 0.00 0.00 1.98
1345 2489 4.675408 CGCTGCATGTATCCACGTATCTAT 60.675 45.833 0.00 0.00 0.00 1.98
1347 2491 5.744345 GCTGCATGTATCCACGTATCTATAC 59.256 44.000 0.00 0.00 0.00 1.47
1349 2493 7.462571 TGCATGTATCCACGTATCTATACTT 57.537 36.000 0.00 0.00 0.00 2.24
1350 2494 7.312899 TGCATGTATCCACGTATCTATACTTG 58.687 38.462 14.02 14.02 35.07 3.16
1352 2496 6.263516 TGTATCCACGTATCTATACTTGGC 57.736 41.667 16.83 7.43 46.47 4.52
1353 2497 6.008331 TGTATCCACGTATCTATACTTGGCT 58.992 40.000 16.83 11.93 46.47 4.75
1354 2498 6.492429 TGTATCCACGTATCTATACTTGGCTT 59.508 38.462 16.83 11.12 46.47 4.35
1355 2499 5.449107 TCCACGTATCTATACTTGGCTTC 57.551 43.478 16.83 0.00 46.47 3.86
1357 2501 5.241064 TCCACGTATCTATACTTGGCTTCTC 59.759 44.000 16.83 0.00 46.47 2.87
1358 2502 5.462405 CACGTATCTATACTTGGCTTCTCC 58.538 45.833 0.00 0.00 31.24 3.71
1359 2503 4.523558 ACGTATCTATACTTGGCTTCTCCC 59.476 45.833 0.00 0.00 0.00 4.30
1360 2504 4.523173 CGTATCTATACTTGGCTTCTCCCA 59.477 45.833 0.00 0.00 0.00 4.37
1361 2505 4.965200 ATCTATACTTGGCTTCTCCCAC 57.035 45.455 0.00 0.00 33.82 4.61
1362 2506 3.995636 TCTATACTTGGCTTCTCCCACT 58.004 45.455 0.00 0.00 33.82 4.00
1364 2508 2.859165 TACTTGGCTTCTCCCACTTG 57.141 50.000 0.00 0.00 33.82 3.16
1365 2509 0.846693 ACTTGGCTTCTCCCACTTGT 59.153 50.000 0.00 0.00 33.82 3.16
1366 2510 2.054799 ACTTGGCTTCTCCCACTTGTA 58.945 47.619 0.00 0.00 33.82 2.41
1367 2511 2.441750 ACTTGGCTTCTCCCACTTGTAA 59.558 45.455 0.00 0.00 33.82 2.41
1368 2512 3.117663 ACTTGGCTTCTCCCACTTGTAAA 60.118 43.478 0.00 0.00 33.82 2.01
1369 2513 3.586470 TGGCTTCTCCCACTTGTAAAA 57.414 42.857 0.00 0.00 0.00 1.52
1370 2514 3.904717 TGGCTTCTCCCACTTGTAAAAA 58.095 40.909 0.00 0.00 0.00 1.94
1394 2538 9.553064 AAAACATATAAAGTGCCTAGAGATCTG 57.447 33.333 0.00 0.00 0.00 2.90
1395 2539 7.238486 ACATATAAAGTGCCTAGAGATCTGG 57.762 40.000 0.00 0.00 0.00 3.86
1396 2540 7.013220 ACATATAAAGTGCCTAGAGATCTGGA 58.987 38.462 0.00 0.00 0.00 3.86
1397 2541 5.799827 ATAAAGTGCCTAGAGATCTGGAC 57.200 43.478 0.00 0.00 0.00 4.02
1398 2542 2.080654 AGTGCCTAGAGATCTGGACC 57.919 55.000 0.00 0.00 0.00 4.46
1399 2543 1.573376 AGTGCCTAGAGATCTGGACCT 59.427 52.381 0.00 0.00 0.00 3.85
1400 2544 2.786445 AGTGCCTAGAGATCTGGACCTA 59.214 50.000 0.00 0.00 0.00 3.08
1401 2545 3.153919 GTGCCTAGAGATCTGGACCTAG 58.846 54.545 0.00 4.55 0.00 3.02
1402 2546 3.056832 TGCCTAGAGATCTGGACCTAGA 58.943 50.000 14.74 0.00 32.49 2.43
1403 2547 3.463704 TGCCTAGAGATCTGGACCTAGAA 59.536 47.826 14.74 3.76 32.49 2.10
1404 2548 3.824443 GCCTAGAGATCTGGACCTAGAAC 59.176 52.174 14.74 5.90 32.49 3.01
1405 2549 4.447180 GCCTAGAGATCTGGACCTAGAACT 60.447 50.000 14.74 0.00 33.17 3.01
1406 2550 5.221966 GCCTAGAGATCTGGACCTAGAACTA 60.222 48.000 14.74 0.54 30.98 2.24
1407 2551 6.523497 GCCTAGAGATCTGGACCTAGAACTAT 60.523 46.154 14.74 0.00 30.98 2.12
1408 2552 6.884295 CCTAGAGATCTGGACCTAGAACTATG 59.116 46.154 14.74 0.00 30.98 2.23
1409 2553 5.076873 AGAGATCTGGACCTAGAACTATGC 58.923 45.833 0.00 0.00 30.98 3.14
1410 2554 4.809193 AGATCTGGACCTAGAACTATGCA 58.191 43.478 0.00 0.00 29.28 3.96
1411 2555 5.401750 AGATCTGGACCTAGAACTATGCAT 58.598 41.667 3.79 3.79 29.28 3.96
1412 2556 5.843421 AGATCTGGACCTAGAACTATGCATT 59.157 40.000 3.54 0.00 29.28 3.56
1413 2557 7.013220 AGATCTGGACCTAGAACTATGCATTA 58.987 38.462 3.54 0.00 29.28 1.90
1414 2558 6.656632 TCTGGACCTAGAACTATGCATTAG 57.343 41.667 3.54 0.00 0.00 1.73
1415 2559 5.011125 TCTGGACCTAGAACTATGCATTAGC 59.989 44.000 3.54 0.00 42.57 3.09
1432 2576 7.012959 GCATTAGCATATGTCACCATAGATG 57.987 40.000 4.29 0.00 41.58 2.90
1433 2577 6.457934 GCATTAGCATATGTCACCATAGATGC 60.458 42.308 4.29 0.00 40.80 3.91
1434 2578 4.628963 AGCATATGTCACCATAGATGCA 57.371 40.909 4.29 0.00 42.02 3.96
1435 2579 5.175388 AGCATATGTCACCATAGATGCAT 57.825 39.130 0.00 0.00 42.02 3.96
1436 2580 6.303903 AGCATATGTCACCATAGATGCATA 57.696 37.500 0.00 0.00 42.02 3.14
1437 2581 6.111382 AGCATATGTCACCATAGATGCATAC 58.889 40.000 0.00 0.00 42.02 2.39
1438 2582 6.070366 AGCATATGTCACCATAGATGCATACT 60.070 38.462 0.00 1.27 42.02 2.12
1439 2583 7.124750 AGCATATGTCACCATAGATGCATACTA 59.875 37.037 0.00 3.73 42.02 1.82
1440 2584 7.930325 GCATATGTCACCATAGATGCATACTAT 59.070 37.037 0.00 6.04 40.46 2.12
1441 2585 9.828039 CATATGTCACCATAGATGCATACTATT 57.172 33.333 0.00 0.00 36.99 1.73
1443 2587 6.701340 TGTCACCATAGATGCATACTATTCC 58.299 40.000 0.00 0.00 0.00 3.01
1444 2588 6.109359 GTCACCATAGATGCATACTATTCCC 58.891 44.000 0.00 0.00 0.00 3.97
1445 2589 6.025539 TCACCATAGATGCATACTATTCCCT 58.974 40.000 0.00 0.00 0.00 4.20
1446 2590 6.070596 TCACCATAGATGCATACTATTCCCTG 60.071 42.308 0.00 0.00 0.00 4.45
1447 2591 6.025539 ACCATAGATGCATACTATTCCCTGA 58.974 40.000 0.00 0.00 0.00 3.86
1448 2592 6.155910 ACCATAGATGCATACTATTCCCTGAG 59.844 42.308 0.00 0.00 0.00 3.35
1449 2593 6.382282 CCATAGATGCATACTATTCCCTGAGA 59.618 42.308 0.00 0.00 0.00 3.27
1450 2594 7.093156 CCATAGATGCATACTATTCCCTGAGAA 60.093 40.741 0.00 0.00 39.32 2.87
1454 2598 4.006319 GCATACTATTCCCTGAGAATGCC 58.994 47.826 0.00 0.00 45.11 4.40
1456 2600 5.486526 CATACTATTCCCTGAGAATGCCTC 58.513 45.833 0.00 0.00 45.11 4.70
1475 2619 7.701539 TGCCTCTCTAGCATTTTTATTTTCA 57.298 32.000 0.00 0.00 34.69 2.69
1477 2621 8.584157 TGCCTCTCTAGCATTTTTATTTTCAAA 58.416 29.630 0.00 0.00 34.69 2.69
1478 2622 9.423061 GCCTCTCTAGCATTTTTATTTTCAAAA 57.577 29.630 0.00 0.00 0.00 2.44
1570 2714 8.948145 TGCTTTAATTAAAACTTCCGTATGCTA 58.052 29.630 11.62 0.00 0.00 3.49
1571 2715 9.434559 GCTTTAATTAAAACTTCCGTATGCTAG 57.565 33.333 11.62 0.00 0.00 3.42
1578 2722 4.915158 ACTTCCGTATGCTAGAAGTACC 57.085 45.455 12.32 0.00 46.32 3.34
1579 2723 4.534797 ACTTCCGTATGCTAGAAGTACCT 58.465 43.478 12.32 0.00 46.32 3.08
1580 2724 5.688807 ACTTCCGTATGCTAGAAGTACCTA 58.311 41.667 12.32 0.00 46.32 3.08
1582 2726 4.649692 TCCGTATGCTAGAAGTACCTAGG 58.350 47.826 7.41 7.41 37.27 3.02
1583 2727 3.190953 CCGTATGCTAGAAGTACCTAGGC 59.809 52.174 9.30 0.00 37.27 3.93
1585 2729 5.243981 CGTATGCTAGAAGTACCTAGGCTA 58.756 45.833 9.30 0.55 37.27 3.93
1586 2730 5.881443 CGTATGCTAGAAGTACCTAGGCTAT 59.119 44.000 9.30 0.00 37.27 2.97
1588 2732 7.551974 CGTATGCTAGAAGTACCTAGGCTATAA 59.448 40.741 9.30 0.00 37.27 0.98
1592 2736 7.232941 TGCTAGAAGTACCTAGGCTATAAAAGG 59.767 40.741 9.30 0.00 37.27 3.11
1594 2738 9.804977 CTAGAAGTACCTAGGCTATAAAAGGTA 57.195 37.037 9.30 8.70 42.34 3.08
1607 3018 9.343539 GGCTATAAAAGGTAGAAATGAGAATGT 57.656 33.333 0.00 0.00 0.00 2.71
1634 3045 4.927425 GCAAGCTGTCATTGTCAAAATCAT 59.073 37.500 0.00 0.00 0.00 2.45
1651 3062 7.231115 TCAAAATCATCAACTTTCCATCTGTCA 59.769 33.333 0.00 0.00 0.00 3.58
1666 3077 0.036105 TGTCAGGCTGGCATACACAG 60.036 55.000 19.55 0.00 38.95 3.66
1676 3087 1.406069 GGCATACACAGCACTAGCACT 60.406 52.381 0.00 0.00 45.49 4.40
1707 3118 5.391736 CCGGTCTAAGTGTCTAACTAGTGTG 60.392 48.000 0.00 0.00 38.56 3.82
1797 3212 3.466836 CTTGTCTTGCAGGTAGAACACA 58.533 45.455 0.00 0.00 0.00 3.72
1823 3238 0.677731 CATGGCCGACAACATGGTCT 60.678 55.000 0.00 0.00 40.50 3.85
2073 3496 2.283966 CGAGGTCTGGGGTCACCT 60.284 66.667 0.00 0.00 46.35 4.00
2167 3590 2.289547 CGATTTCGTTGACCACAAGGTT 59.710 45.455 0.00 0.00 40.79 3.50
2192 4767 3.323243 GACTAAACGCACTTTCTGCCTA 58.677 45.455 0.00 0.00 43.84 3.93
2229 4804 0.166597 TTTCTTTCATGCTCGCTGCG 59.833 50.000 17.25 17.25 46.63 5.18
2237 4812 3.854459 GCTCGCTGCGTTGGCTAC 61.854 66.667 22.48 1.32 40.82 3.58
2253 4828 7.376072 GCGTTGGCTACAAATATTTACTTGATC 59.624 37.037 0.00 0.00 38.54 2.92
2323 4898 4.335082 TTCTTGAACTTTGACACACACG 57.665 40.909 0.00 0.00 0.00 4.49
2335 4910 8.832521 ACTTTGACACACACGAAAAATATCTAA 58.167 29.630 0.00 0.00 0.00 2.10
2436 5011 1.985473 TGCTGTTCAAGAGCAATGGT 58.015 45.000 6.79 0.00 43.47 3.55
2443 5018 4.397103 TGTTCAAGAGCAATGGTGATGATC 59.603 41.667 0.00 0.00 33.51 2.92
2527 5102 1.416401 ACAAGAACTTCTTCTCCGGCA 59.584 47.619 0.00 0.00 35.52 5.69
2553 5128 3.000727 GTTCGGATTTCTGGACATCGTT 58.999 45.455 0.00 0.00 30.92 3.85
2743 13605 2.171840 ACGGCATAGAGTGAAGTGAGT 58.828 47.619 0.00 0.00 0.00 3.41
2929 13798 7.466805 TCTCATCGAGCAAACAAAATTAGATG 58.533 34.615 0.00 0.00 35.59 2.90
3004 13873 3.242739 GCGAATGTGTGTTCTTGTTCACT 60.243 43.478 0.00 0.00 35.82 3.41
3102 13973 9.743057 CAATGGTAGTCATGTTCAACTTTTAAA 57.257 29.630 0.00 0.00 35.99 1.52
3140 14011 2.125106 GTGGGAGGGCATCGTGTC 60.125 66.667 0.00 0.00 0.00 3.67
3360 14231 5.195001 TGTTGAGATGTAAGCCAAAAACC 57.805 39.130 0.00 0.00 0.00 3.27
3363 14234 4.211125 TGAGATGTAAGCCAAAAACCACA 58.789 39.130 0.00 0.00 0.00 4.17
3367 14238 3.571590 TGTAAGCCAAAAACCACATCCT 58.428 40.909 0.00 0.00 0.00 3.24
3368 14239 3.572255 TGTAAGCCAAAAACCACATCCTC 59.428 43.478 0.00 0.00 0.00 3.71
3370 14241 1.147817 AGCCAAAAACCACATCCTCCT 59.852 47.619 0.00 0.00 0.00 3.69
3391 14262 8.401894 CCTCCTATTTATTTCCCCCATTCTAAT 58.598 37.037 0.00 0.00 0.00 1.73
3444 14315 9.801714 CAAAATCTCAAAATATGCAACTTTGAC 57.198 29.630 13.98 0.00 34.88 3.18
3450 14321 7.375053 TCAAAATATGCAACTTTGACCCTTAC 58.625 34.615 13.98 0.00 34.88 2.34
3455 14326 8.823220 ATATGCAACTTTGACCCTTACTATTT 57.177 30.769 0.00 0.00 0.00 1.40
3456 14327 6.969993 TGCAACTTTGACCCTTACTATTTT 57.030 33.333 0.00 0.00 0.00 1.82
3525 14396 1.388547 AAAAGCAGCGAACCAACTGA 58.611 45.000 0.00 0.00 35.90 3.41
3543 14414 2.231964 CTGATGGTTGGATGGTTGGTTG 59.768 50.000 0.00 0.00 0.00 3.77
3558 14429 1.375326 GTTGGACAGTGGTCTCCCC 59.625 63.158 0.00 0.00 43.77 4.81
3572 14443 3.914713 CCCCAGCCCACCAGGTTT 61.915 66.667 0.00 0.00 38.26 3.27
3578 14449 1.145571 AGCCCACCAGGTTTAAGTCA 58.854 50.000 0.00 0.00 38.26 3.41
3585 14456 2.108250 ACCAGGTTTAAGTCATGGTGCT 59.892 45.455 14.92 0.00 46.03 4.40
3586 14457 2.749621 CCAGGTTTAAGTCATGGTGCTC 59.250 50.000 0.00 0.00 32.92 4.26
3596 14467 3.313526 AGTCATGGTGCTCGCATTTATTC 59.686 43.478 0.00 0.00 0.00 1.75
3641 14512 1.204704 TGATGCACGTTCAGTAGGAGG 59.795 52.381 0.00 0.00 0.00 4.30
3648 14519 3.193691 CACGTTCAGTAGGAGGAGACATT 59.806 47.826 0.00 0.00 0.00 2.71
3663 14534 3.338249 AGACATTCCCATTGACAACGAG 58.662 45.455 0.00 0.00 0.00 4.18
3664 14535 3.007940 AGACATTCCCATTGACAACGAGA 59.992 43.478 0.00 0.00 0.00 4.04
3680 14551 1.149148 GAGACGCCTTTGGTGACTTC 58.851 55.000 4.02 0.00 38.20 3.01
3709 14580 2.743664 TCAAAATGACATGTCGGCTCAG 59.256 45.455 20.54 9.11 0.00 3.35
3720 14591 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
3722 14593 1.381165 GGCTCAGTCTCTCGGAGGTC 61.381 65.000 4.96 0.00 38.48 3.85
3732 14603 0.540830 CTCGGAGGTCCTCATAGGGG 60.541 65.000 20.72 2.83 35.59 4.79
3733 14604 1.233369 CGGAGGTCCTCATAGGGGT 59.767 63.158 20.72 0.00 35.59 4.95
3734 14605 0.481567 CGGAGGTCCTCATAGGGGTA 59.518 60.000 20.72 0.00 35.59 3.69
3736 14607 1.203199 GGAGGTCCTCATAGGGGTAGG 60.203 61.905 20.72 0.00 35.59 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.401058 CCTTGTCAGGTGATCTAATTAAAAGAT 57.599 33.333 3.92 3.92 34.39 2.40
28 29 8.602424 TCCTTGTCAGGTGATCTAATTAAAAGA 58.398 33.333 0.00 0.00 41.69 2.52
49 50 3.490348 ACAGGTGGAAAGTTGATCCTTG 58.510 45.455 0.00 0.00 37.85 3.61
104 110 8.451908 AATATTTGGAAACGGAGGAATTAGAG 57.548 34.615 0.00 0.00 0.00 2.43
111 117 6.007703 ACTTCAAATATTTGGAAACGGAGGA 58.992 36.000 24.40 2.15 38.66 3.71
117 123 8.871686 ACACAGAACTTCAAATATTTGGAAAC 57.128 30.769 24.40 11.98 38.66 2.78
139 145 7.810766 TGACTTCAAGAAATTTGACAAACAC 57.189 32.000 1.94 0.00 0.00 3.32
166 182 7.471657 TGCGTCGTTCAATATGTTGTATATT 57.528 32.000 1.86 0.00 36.69 1.28
167 183 7.509797 CATGCGTCGTTCAATATGTTGTATAT 58.490 34.615 1.86 0.00 36.69 0.86
168 184 6.563196 GCATGCGTCGTTCAATATGTTGTATA 60.563 38.462 0.00 0.00 36.69 1.47
169 185 5.737353 CATGCGTCGTTCAATATGTTGTAT 58.263 37.500 1.86 0.00 36.69 2.29
170 186 4.493382 GCATGCGTCGTTCAATATGTTGTA 60.493 41.667 0.00 0.00 36.69 2.41
172 188 2.777845 GCATGCGTCGTTCAATATGTTG 59.222 45.455 0.00 0.00 36.65 3.33
174 190 2.006169 TGCATGCGTCGTTCAATATGT 58.994 42.857 14.09 0.00 0.00 2.29
175 191 2.735643 TGCATGCGTCGTTCAATATG 57.264 45.000 14.09 0.00 0.00 1.78
189 212 5.118050 CACAGTTTCAAGTAGCAAATGCATG 59.882 40.000 0.00 0.00 45.16 4.06
197 220 6.596106 TGTTAACTTCACAGTTTCAAGTAGCA 59.404 34.615 7.22 0.00 40.66 3.49
252 275 4.567971 CCCGACAGACGTAGATAGTATCT 58.432 47.826 16.75 16.75 40.08 1.98
257 280 1.264557 CAGCCCGACAGACGTAGATAG 59.735 57.143 0.00 0.00 40.78 2.08
271 294 3.424300 CATGTGTATGCCAGCCCG 58.576 61.111 0.00 0.00 0.00 6.13
425 448 3.775316 AGTAAACATCGATCAGGGAAGGT 59.225 43.478 0.00 0.00 0.00 3.50
437 460 5.990408 ACAAGCAGAGAAAAGTAAACATCG 58.010 37.500 0.00 0.00 0.00 3.84
438 461 7.417612 TCAACAAGCAGAGAAAAGTAAACATC 58.582 34.615 0.00 0.00 0.00 3.06
439 462 7.333528 TCAACAAGCAGAGAAAAGTAAACAT 57.666 32.000 0.00 0.00 0.00 2.71
441 464 7.755373 ACTTTCAACAAGCAGAGAAAAGTAAAC 59.245 33.333 0.00 0.00 30.49 2.01
442 465 7.826690 ACTTTCAACAAGCAGAGAAAAGTAAA 58.173 30.769 0.00 0.00 30.49 2.01
445 468 5.904362 ACTTTCAACAAGCAGAGAAAAGT 57.096 34.783 0.00 0.00 30.49 2.66
446 469 8.778358 AGTATACTTTCAACAAGCAGAGAAAAG 58.222 33.333 0.00 0.00 30.49 2.27
447 470 8.559536 CAGTATACTTTCAACAAGCAGAGAAAA 58.440 33.333 1.56 0.00 30.49 2.29
466 492 4.900054 ACCTACATCAAGGACCCAGTATAC 59.100 45.833 0.00 0.00 39.15 1.47
511 537 1.522580 GGTGATCCAGCTCCGCTTC 60.523 63.158 0.00 0.00 36.40 3.86
512 538 0.687757 TAGGTGATCCAGCTCCGCTT 60.688 55.000 1.66 0.00 41.50 4.68
547 574 2.960659 CGCAGATGAGAGGCAGCG 60.961 66.667 0.00 0.00 38.13 5.18
590 617 2.385237 GCTCTCTAGTCGAGCGTCA 58.615 57.895 16.81 0.00 43.69 4.35
599 630 1.282447 TCTCACGGAAGGCTCTCTAGT 59.718 52.381 0.00 0.00 0.00 2.57
611 642 0.748450 AAAACGGACAGTCTCACGGA 59.252 50.000 0.00 0.00 0.00 4.69
614 645 1.525619 CGGAAAAACGGACAGTCTCAC 59.474 52.381 0.00 0.00 0.00 3.51
618 649 1.203313 CGCGGAAAAACGGACAGTC 59.797 57.895 0.00 0.00 0.00 3.51
619 650 0.601841 ATCGCGGAAAAACGGACAGT 60.602 50.000 6.13 0.00 0.00 3.55
626 659 0.025898 GCGGTAGATCGCGGAAAAAC 59.974 55.000 6.13 0.00 46.23 2.43
658 691 2.514510 TAAAGCCATCTCGCGCACCA 62.515 55.000 8.75 0.00 0.00 4.17
661 694 1.063912 CATTTAAAGCCATCTCGCGCA 59.936 47.619 8.75 0.00 0.00 6.09
674 707 2.933906 CTCGACCGCTAAGCCATTTAAA 59.066 45.455 0.00 0.00 0.00 1.52
694 727 0.322187 CCGGGAAATTGGAACGACCT 60.322 55.000 0.00 0.00 39.86 3.85
700 733 1.859302 CCATTCCCGGGAAATTGGAA 58.141 50.000 37.51 19.14 42.05 3.53
702 735 0.687427 AGCCATTCCCGGGAAATTGG 60.687 55.000 36.73 36.73 37.35 3.16
710 743 0.740737 GTGAAATGAGCCATTCCCGG 59.259 55.000 0.00 0.00 32.43 5.73
711 744 0.378257 CGTGAAATGAGCCATTCCCG 59.622 55.000 1.57 1.93 32.43 5.14
717 750 2.361104 GGCCCGTGAAATGAGCCA 60.361 61.111 0.00 0.00 43.32 4.75
738 772 2.037847 ATTTGTCTGGCCCCCTGC 59.962 61.111 0.00 0.00 40.16 4.85
745 779 1.909700 TGGGTTGAGATTTGTCTGGC 58.090 50.000 0.00 0.00 0.00 4.85
750 784 5.294734 AGCAAATTTGGGTTGAGATTTGT 57.705 34.783 19.47 0.00 40.08 2.83
756 790 1.885887 TCGGAGCAAATTTGGGTTGAG 59.114 47.619 19.47 0.00 0.00 3.02
780 814 0.673985 GGTTTCCTTGACCAGTTGGC 59.326 55.000 0.00 0.00 39.32 4.52
787 821 3.487372 ACAAAGCTAGGTTTCCTTGACC 58.513 45.455 16.80 0.00 34.61 4.02
806 840 3.716872 GAGAAGGGAATGGGGATAGAACA 59.283 47.826 0.00 0.00 0.00 3.18
835 869 1.922135 GCCGCAAGCTTTTCGGATGA 61.922 55.000 30.41 0.00 45.53 2.92
859 893 4.731612 AGCTGTGCTGAGCCGTCG 62.732 66.667 0.23 0.00 40.08 5.12
884 918 4.887190 AAACAACCGCCGGCCTGT 62.887 61.111 23.46 18.88 0.00 4.00
893 927 2.010817 GCTTGCAGCGAAACAACCG 61.011 57.895 0.00 0.00 0.00 4.44
894 928 1.661509 GGCTTGCAGCGAAACAACC 60.662 57.895 0.00 0.00 43.62 3.77
896 930 1.719725 TTCGGCTTGCAGCGAAACAA 61.720 50.000 4.70 0.00 43.62 2.83
899 933 2.616330 CCTTCGGCTTGCAGCGAAA 61.616 57.895 7.75 5.78 43.62 3.46
975 1009 2.270986 GCAGAGGCCCCTTGTTGTG 61.271 63.158 0.00 0.00 0.00 3.33
980 1014 3.970410 TGGTGCAGAGGCCCCTTG 61.970 66.667 0.00 0.00 38.53 3.61
981 1015 3.971702 GTGGTGCAGAGGCCCCTT 61.972 66.667 0.00 0.00 38.53 3.95
987 1021 1.807165 CGACATCGTGGTGCAGAGG 60.807 63.158 0.00 0.00 34.11 3.69
1014 1048 0.698818 ATGGACTGGGAGTTGGAACC 59.301 55.000 0.00 0.00 0.00 3.62
1028 1062 2.749621 CCTTTACCTGCTGTTGATGGAC 59.250 50.000 0.00 0.00 0.00 4.02
1036 1070 0.179029 AACGTGCCTTTACCTGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
1043 1077 2.288886 ACAGAGAGGAACGTGCCTTTAC 60.289 50.000 18.65 11.27 38.73 2.01
1052 1086 0.456995 GAAGCGGACAGAGAGGAACG 60.457 60.000 0.00 0.00 0.00 3.95
1061 1095 0.539051 AGGATTCAGGAAGCGGACAG 59.461 55.000 0.00 0.00 0.00 3.51
1075 1109 9.823647 CAGTACTATTGTTACTGAATCAGGATT 57.176 33.333 15.38 0.00 42.65 3.01
1076 1110 8.424918 CCAGTACTATTGTTACTGAATCAGGAT 58.575 37.037 15.38 0.00 42.65 3.24
1077 1111 7.618117 TCCAGTACTATTGTTACTGAATCAGGA 59.382 37.037 15.38 2.37 42.65 3.86
1078 1112 7.707035 GTCCAGTACTATTGTTACTGAATCAGG 59.293 40.741 15.38 0.00 42.65 3.86
1090 1124 7.390718 GGAAAATGTTGAGTCCAGTACTATTGT 59.609 37.037 0.00 0.00 39.07 2.71
1093 1127 7.106239 CAGGAAAATGTTGAGTCCAGTACTAT 58.894 38.462 0.00 0.00 39.07 2.12
1114 1148 5.417580 GCAATAACCTTTTGTCCATACAGGA 59.582 40.000 0.00 0.00 46.75 3.86
1115 1149 5.418840 AGCAATAACCTTTTGTCCATACAGG 59.581 40.000 0.00 0.00 36.83 4.00
1116 1150 6.515272 AGCAATAACCTTTTGTCCATACAG 57.485 37.500 0.00 0.00 36.83 2.74
1117 1151 7.011950 CGATAGCAATAACCTTTTGTCCATACA 59.988 37.037 0.00 0.00 0.00 2.29
1118 1152 7.352739 CGATAGCAATAACCTTTTGTCCATAC 58.647 38.462 0.00 0.00 0.00 2.39
1119 1153 6.485313 CCGATAGCAATAACCTTTTGTCCATA 59.515 38.462 0.00 0.00 0.00 2.74
1121 1155 4.638421 CCGATAGCAATAACCTTTTGTCCA 59.362 41.667 0.00 0.00 0.00 4.02
1123 1157 4.036380 CCCCGATAGCAATAACCTTTTGTC 59.964 45.833 0.00 0.00 0.00 3.18
1126 1160 2.956333 GCCCCGATAGCAATAACCTTTT 59.044 45.455 0.00 0.00 0.00 2.27
1127 1161 2.583143 GCCCCGATAGCAATAACCTTT 58.417 47.619 0.00 0.00 0.00 3.11
1130 1164 0.109723 TGGCCCCGATAGCAATAACC 59.890 55.000 0.00 0.00 0.00 2.85
1131 1165 1.812571 CATGGCCCCGATAGCAATAAC 59.187 52.381 0.00 0.00 0.00 1.89
1132 1166 1.271871 CCATGGCCCCGATAGCAATAA 60.272 52.381 0.00 0.00 0.00 1.40
1134 1168 1.075482 CCATGGCCCCGATAGCAAT 59.925 57.895 0.00 0.00 0.00 3.56
1135 1169 2.382770 ACCATGGCCCCGATAGCAA 61.383 57.895 13.04 0.00 0.00 3.91
1136 1170 2.772191 ACCATGGCCCCGATAGCA 60.772 61.111 13.04 0.00 0.00 3.49
1137 1171 2.281761 CACCATGGCCCCGATAGC 60.282 66.667 13.04 0.00 0.00 2.97
1139 1173 3.174987 CCCACCATGGCCCCGATA 61.175 66.667 13.04 0.00 35.79 2.92
1149 1793 2.053747 TACCTCCTCAAACCCACCAT 57.946 50.000 0.00 0.00 0.00 3.55
1150 1794 2.041081 CAATACCTCCTCAAACCCACCA 59.959 50.000 0.00 0.00 0.00 4.17
1153 1797 1.638589 CCCAATACCTCCTCAAACCCA 59.361 52.381 0.00 0.00 0.00 4.51
1155 1799 1.639108 ACCCCAATACCTCCTCAAACC 59.361 52.381 0.00 0.00 0.00 3.27
1157 1801 2.307686 GTCACCCCAATACCTCCTCAAA 59.692 50.000 0.00 0.00 0.00 2.69
1162 1806 1.580059 TCTGTCACCCCAATACCTCC 58.420 55.000 0.00 0.00 0.00 4.30
1164 1808 1.282157 GCTTCTGTCACCCCAATACCT 59.718 52.381 0.00 0.00 0.00 3.08
1169 1813 2.551270 AGATAGCTTCTGTCACCCCAA 58.449 47.619 0.00 0.00 31.79 4.12
1170 1814 2.254152 AGATAGCTTCTGTCACCCCA 57.746 50.000 0.00 0.00 31.79 4.96
1181 1825 2.102252 CAGAGAAGGCGGAAGATAGCTT 59.898 50.000 0.00 0.00 36.96 3.74
1182 1826 1.686052 CAGAGAAGGCGGAAGATAGCT 59.314 52.381 0.00 0.00 0.00 3.32
1184 1828 2.690497 TGTCAGAGAAGGCGGAAGATAG 59.310 50.000 0.00 0.00 0.00 2.08
1185 1829 2.735151 TGTCAGAGAAGGCGGAAGATA 58.265 47.619 0.00 0.00 0.00 1.98
1186 1830 1.561643 TGTCAGAGAAGGCGGAAGAT 58.438 50.000 0.00 0.00 0.00 2.40
1187 1831 1.478510 GATGTCAGAGAAGGCGGAAGA 59.521 52.381 0.00 0.00 0.00 2.87
1190 1834 1.205655 CAAGATGTCAGAGAAGGCGGA 59.794 52.381 0.00 0.00 0.00 5.54
1192 1836 2.662006 TCAAGATGTCAGAGAAGGCG 57.338 50.000 0.00 0.00 0.00 5.52
1195 1839 4.898265 TCCCCTATCAAGATGTCAGAGAAG 59.102 45.833 0.00 0.00 0.00 2.85
1196 1840 4.883759 TCCCCTATCAAGATGTCAGAGAA 58.116 43.478 0.00 0.00 0.00 2.87
1197 1841 4.542906 TCCCCTATCAAGATGTCAGAGA 57.457 45.455 0.00 0.00 0.00 3.10
1198 1842 5.822132 AATCCCCTATCAAGATGTCAGAG 57.178 43.478 0.00 0.00 0.00 3.35
1199 1843 5.544176 GGTAATCCCCTATCAAGATGTCAGA 59.456 44.000 0.00 0.00 0.00 3.27
1200 1844 5.567623 CGGTAATCCCCTATCAAGATGTCAG 60.568 48.000 0.00 0.00 0.00 3.51
1201 1845 4.283467 CGGTAATCCCCTATCAAGATGTCA 59.717 45.833 0.00 0.00 0.00 3.58
1203 1847 3.583086 CCGGTAATCCCCTATCAAGATGT 59.417 47.826 0.00 0.00 0.00 3.06
1204 1848 3.838317 TCCGGTAATCCCCTATCAAGATG 59.162 47.826 0.00 0.00 0.00 2.90
1205 1849 4.097418 CTCCGGTAATCCCCTATCAAGAT 58.903 47.826 0.00 0.00 0.00 2.40
1206 1850 3.141460 TCTCCGGTAATCCCCTATCAAGA 59.859 47.826 0.00 0.00 0.00 3.02
1207 1851 3.258622 GTCTCCGGTAATCCCCTATCAAG 59.741 52.174 0.00 0.00 0.00 3.02
1208 1852 3.236896 GTCTCCGGTAATCCCCTATCAA 58.763 50.000 0.00 0.00 0.00 2.57
1209 1853 2.492196 GGTCTCCGGTAATCCCCTATCA 60.492 54.545 0.00 0.00 0.00 2.15
1210 1854 2.177734 GGTCTCCGGTAATCCCCTATC 58.822 57.143 0.00 0.00 0.00 2.08
1211 1855 1.549493 CGGTCTCCGGTAATCCCCTAT 60.549 57.143 0.00 0.00 44.15 2.57
1212 1856 0.178981 CGGTCTCCGGTAATCCCCTA 60.179 60.000 0.00 0.00 44.15 3.53
1213 1857 1.457079 CGGTCTCCGGTAATCCCCT 60.457 63.158 0.00 0.00 44.15 4.79
1214 1858 3.135814 CGGTCTCCGGTAATCCCC 58.864 66.667 0.00 0.00 44.15 4.81
1224 1868 4.629251 AACGTAGATAAAGACGGTCTCC 57.371 45.455 11.71 1.80 43.32 3.71
1228 1872 3.426695 CCGTGAACGTAGATAAAGACGGT 60.427 47.826 0.00 0.00 42.85 4.83
1229 1873 3.103738 CCGTGAACGTAGATAAAGACGG 58.896 50.000 1.75 0.00 43.32 4.79
1230 1874 3.103738 CCCGTGAACGTAGATAAAGACG 58.896 50.000 1.75 0.00 44.57 4.18
1231 1875 3.129287 TCCCCGTGAACGTAGATAAAGAC 59.871 47.826 1.75 0.00 37.74 3.01
1232 1876 3.355378 TCCCCGTGAACGTAGATAAAGA 58.645 45.455 1.75 0.00 37.74 2.52
1233 1877 3.379372 TCTCCCCGTGAACGTAGATAAAG 59.621 47.826 1.75 0.00 37.74 1.85
1234 1878 3.129287 GTCTCCCCGTGAACGTAGATAAA 59.871 47.826 1.75 0.00 37.74 1.40
1235 1879 2.684881 GTCTCCCCGTGAACGTAGATAA 59.315 50.000 1.75 0.00 37.74 1.75
1237 1881 1.101331 GTCTCCCCGTGAACGTAGAT 58.899 55.000 1.75 0.00 37.74 1.98
1238 1882 0.962356 GGTCTCCCCGTGAACGTAGA 60.962 60.000 1.75 0.00 37.74 2.59
1240 1884 1.978617 GGGTCTCCCCGTGAACGTA 60.979 63.158 1.75 0.00 42.41 3.57
1241 1885 3.308705 GGGTCTCCCCGTGAACGT 61.309 66.667 1.75 0.00 42.41 3.99
1250 1894 3.813724 GCAACGATAATTAAGGGTCTCCC 59.186 47.826 0.00 0.00 45.90 4.30
1271 2415 1.595093 CCCCACATTCAGGTTTCGGC 61.595 60.000 0.00 0.00 0.00 5.54
1274 2418 1.177401 GCTCCCCACATTCAGGTTTC 58.823 55.000 0.00 0.00 0.00 2.78
1275 2419 0.482446 TGCTCCCCACATTCAGGTTT 59.518 50.000 0.00 0.00 0.00 3.27
1276 2420 0.482446 TTGCTCCCCACATTCAGGTT 59.518 50.000 0.00 0.00 0.00 3.50
1278 2422 0.038744 AGTTGCTCCCCACATTCAGG 59.961 55.000 0.00 0.00 0.00 3.86
1279 2423 1.171308 CAGTTGCTCCCCACATTCAG 58.829 55.000 0.00 0.00 0.00 3.02
1280 2424 0.478072 ACAGTTGCTCCCCACATTCA 59.522 50.000 0.00 0.00 0.00 2.57
1281 2425 0.883833 CACAGTTGCTCCCCACATTC 59.116 55.000 0.00 0.00 0.00 2.67
1283 2427 0.700564 ATCACAGTTGCTCCCCACAT 59.299 50.000 0.00 0.00 0.00 3.21
1287 2431 0.326264 AGTCATCACAGTTGCTCCCC 59.674 55.000 0.00 0.00 0.00 4.81
1289 2433 4.093998 CACATAAGTCATCACAGTTGCTCC 59.906 45.833 0.00 0.00 0.00 4.70
1290 2434 4.931601 TCACATAAGTCATCACAGTTGCTC 59.068 41.667 0.00 0.00 0.00 4.26
1291 2435 4.898320 TCACATAAGTCATCACAGTTGCT 58.102 39.130 0.00 0.00 0.00 3.91
1292 2436 5.808042 ATCACATAAGTCATCACAGTTGC 57.192 39.130 0.00 0.00 0.00 4.17
1293 2437 8.333186 CACATATCACATAAGTCATCACAGTTG 58.667 37.037 0.00 0.00 0.00 3.16
1294 2438 7.496920 CCACATATCACATAAGTCATCACAGTT 59.503 37.037 0.00 0.00 0.00 3.16
1296 2440 6.073385 GCCACATATCACATAAGTCATCACAG 60.073 42.308 0.00 0.00 0.00 3.66
1297 2441 5.759763 GCCACATATCACATAAGTCATCACA 59.240 40.000 0.00 0.00 0.00 3.58
1298 2442 5.180117 GGCCACATATCACATAAGTCATCAC 59.820 44.000 0.00 0.00 0.00 3.06
1299 2443 5.308014 GGCCACATATCACATAAGTCATCA 58.692 41.667 0.00 0.00 0.00 3.07
1300 2444 4.389992 CGGCCACATATCACATAAGTCATC 59.610 45.833 2.24 0.00 0.00 2.92
1301 2445 4.318332 CGGCCACATATCACATAAGTCAT 58.682 43.478 2.24 0.00 0.00 3.06
1302 2446 3.727726 CGGCCACATATCACATAAGTCA 58.272 45.455 2.24 0.00 0.00 3.41
1303 2447 2.480419 GCGGCCACATATCACATAAGTC 59.520 50.000 2.24 0.00 0.00 3.01
1304 2448 2.104792 AGCGGCCACATATCACATAAGT 59.895 45.455 2.24 0.00 0.00 2.24
1305 2449 2.481568 CAGCGGCCACATATCACATAAG 59.518 50.000 2.24 0.00 0.00 1.73
1307 2451 1.877680 GCAGCGGCCACATATCACATA 60.878 52.381 2.24 0.00 0.00 2.29
1308 2452 1.168407 GCAGCGGCCACATATCACAT 61.168 55.000 2.24 0.00 0.00 3.21
1310 2454 1.168407 ATGCAGCGGCCACATATCAC 61.168 55.000 6.32 0.00 40.13 3.06
1311 2455 1.148949 ATGCAGCGGCCACATATCA 59.851 52.632 6.32 0.00 40.13 2.15
1313 2457 0.108396 TACATGCAGCGGCCACATAT 59.892 50.000 6.32 0.00 40.13 1.78
1314 2458 0.108396 ATACATGCAGCGGCCACATA 59.892 50.000 6.32 0.00 40.13 2.29
1315 2459 1.152902 ATACATGCAGCGGCCACAT 60.153 52.632 6.32 0.00 40.13 3.21
1317 2461 2.546494 GGATACATGCAGCGGCCAC 61.546 63.158 6.32 0.00 40.13 5.01
1319 2463 2.203195 TGGATACATGCAGCGGCC 60.203 61.111 6.32 0.00 46.17 6.13
1337 2481 4.523173 TGGGAGAAGCCAAGTATAGATACG 59.477 45.833 0.00 0.00 37.03 3.06
1338 2482 5.540719 AGTGGGAGAAGCCAAGTATAGATAC 59.459 44.000 0.00 0.00 38.95 2.24
1342 2486 4.080863 ACAAGTGGGAGAAGCCAAGTATAG 60.081 45.833 0.00 0.00 38.95 1.31
1343 2487 3.844211 ACAAGTGGGAGAAGCCAAGTATA 59.156 43.478 0.00 0.00 38.95 1.47
1344 2488 2.644798 ACAAGTGGGAGAAGCCAAGTAT 59.355 45.455 0.00 0.00 38.95 2.12
1345 2489 2.054799 ACAAGTGGGAGAAGCCAAGTA 58.945 47.619 0.00 0.00 38.95 2.24
1347 2491 2.859165 TACAAGTGGGAGAAGCCAAG 57.141 50.000 0.00 0.00 38.95 3.61
1349 2493 3.586470 TTTTACAAGTGGGAGAAGCCA 57.414 42.857 0.00 0.00 38.95 4.75
1368 2512 9.553064 CAGATCTCTAGGCACTTTATATGTTTT 57.447 33.333 0.00 0.00 41.75 2.43
1369 2513 8.153550 CCAGATCTCTAGGCACTTTATATGTTT 58.846 37.037 0.00 0.00 41.75 2.83
1370 2514 7.510685 TCCAGATCTCTAGGCACTTTATATGTT 59.489 37.037 0.00 0.00 41.75 2.71
1371 2515 7.013220 TCCAGATCTCTAGGCACTTTATATGT 58.987 38.462 0.00 0.00 41.75 2.29
1372 2516 7.319646 GTCCAGATCTCTAGGCACTTTATATG 58.680 42.308 0.00 0.00 41.75 1.78
1373 2517 6.439058 GGTCCAGATCTCTAGGCACTTTATAT 59.561 42.308 0.00 0.00 41.75 0.86
1374 2518 5.775701 GGTCCAGATCTCTAGGCACTTTATA 59.224 44.000 0.00 0.00 41.75 0.98
1375 2519 4.591072 GGTCCAGATCTCTAGGCACTTTAT 59.409 45.833 0.00 0.00 41.75 1.40
1376 2520 3.961408 GGTCCAGATCTCTAGGCACTTTA 59.039 47.826 0.00 0.00 41.75 1.85
1377 2521 2.769095 GGTCCAGATCTCTAGGCACTTT 59.231 50.000 0.00 0.00 41.75 2.66
1378 2522 2.023501 AGGTCCAGATCTCTAGGCACTT 60.024 50.000 0.00 0.00 41.75 3.16
1379 2523 1.573376 AGGTCCAGATCTCTAGGCACT 59.427 52.381 0.00 0.00 46.37 4.40
1380 2524 2.080654 AGGTCCAGATCTCTAGGCAC 57.919 55.000 0.00 0.00 0.00 5.01
1381 2525 3.056832 TCTAGGTCCAGATCTCTAGGCA 58.943 50.000 13.47 0.00 32.41 4.75
1382 2526 3.799432 TCTAGGTCCAGATCTCTAGGC 57.201 52.381 13.47 0.00 32.41 3.93
1383 2527 5.319043 AGTTCTAGGTCCAGATCTCTAGG 57.681 47.826 13.47 4.22 32.41 3.02
1384 2528 6.374333 GCATAGTTCTAGGTCCAGATCTCTAG 59.626 46.154 9.06 9.06 0.00 2.43
1385 2529 6.183361 TGCATAGTTCTAGGTCCAGATCTCTA 60.183 42.308 0.00 0.00 0.00 2.43
1386 2530 5.076873 GCATAGTTCTAGGTCCAGATCTCT 58.923 45.833 0.00 0.00 0.00 3.10
1387 2531 4.830046 TGCATAGTTCTAGGTCCAGATCTC 59.170 45.833 0.00 0.00 0.00 2.75
1388 2532 4.809193 TGCATAGTTCTAGGTCCAGATCT 58.191 43.478 0.00 0.00 0.00 2.75
1389 2533 5.736951 ATGCATAGTTCTAGGTCCAGATC 57.263 43.478 0.00 0.00 0.00 2.75
1390 2534 6.295575 GCTAATGCATAGTTCTAGGTCCAGAT 60.296 42.308 0.00 0.00 39.41 2.90
1391 2535 5.011125 GCTAATGCATAGTTCTAGGTCCAGA 59.989 44.000 0.00 0.00 39.41 3.86
1392 2536 5.221521 TGCTAATGCATAGTTCTAGGTCCAG 60.222 44.000 0.00 0.00 45.31 3.86
1393 2537 4.653801 TGCTAATGCATAGTTCTAGGTCCA 59.346 41.667 0.00 0.00 45.31 4.02
1394 2538 5.215252 TGCTAATGCATAGTTCTAGGTCC 57.785 43.478 0.00 0.00 45.31 4.46
1420 2564 6.070538 AGGGAATAGTATGCATCTATGGTGAC 60.071 42.308 0.19 0.00 0.00 3.67
1421 2565 6.025539 AGGGAATAGTATGCATCTATGGTGA 58.974 40.000 0.19 0.00 0.00 4.02
1422 2566 6.070596 TCAGGGAATAGTATGCATCTATGGTG 60.071 42.308 0.19 6.69 0.00 4.17
1423 2567 6.025539 TCAGGGAATAGTATGCATCTATGGT 58.974 40.000 0.19 0.00 0.00 3.55
1424 2568 6.382282 TCTCAGGGAATAGTATGCATCTATGG 59.618 42.308 0.19 0.68 0.00 2.74
1425 2569 7.415592 TCTCAGGGAATAGTATGCATCTATG 57.584 40.000 0.19 0.66 0.00 2.23
1426 2570 8.484575 CATTCTCAGGGAATAGTATGCATCTAT 58.515 37.037 0.19 7.61 42.20 1.98
1427 2571 7.580302 GCATTCTCAGGGAATAGTATGCATCTA 60.580 40.741 0.19 5.39 42.63 1.98
1428 2572 6.709281 CATTCTCAGGGAATAGTATGCATCT 58.291 40.000 0.19 3.00 42.20 2.90
1429 2573 5.353678 GCATTCTCAGGGAATAGTATGCATC 59.646 44.000 0.19 0.00 42.63 3.91
1430 2574 5.251764 GCATTCTCAGGGAATAGTATGCAT 58.748 41.667 3.79 3.79 42.63 3.96
1431 2575 4.505566 GGCATTCTCAGGGAATAGTATGCA 60.506 45.833 13.48 0.00 43.99 3.96
1432 2576 4.006319 GGCATTCTCAGGGAATAGTATGC 58.994 47.826 0.00 0.00 42.20 3.14
1433 2577 5.248020 AGAGGCATTCTCAGGGAATAGTATG 59.752 44.000 0.00 0.00 44.81 2.39
1434 2578 5.410602 AGAGGCATTCTCAGGGAATAGTAT 58.589 41.667 0.00 0.00 44.81 2.12
1435 2579 4.820775 AGAGGCATTCTCAGGGAATAGTA 58.179 43.478 0.00 0.00 44.81 1.82
1436 2580 3.663198 AGAGGCATTCTCAGGGAATAGT 58.337 45.455 0.00 0.00 44.81 2.12
1541 2685 9.620660 CATACGGAAGTTTTAATTAAAGCAAGT 57.379 29.630 22.01 17.36 46.40 3.16
1542 2686 8.583765 GCATACGGAAGTTTTAATTAAAGCAAG 58.416 33.333 22.01 13.80 46.40 4.01
1543 2687 8.301002 AGCATACGGAAGTTTTAATTAAAGCAA 58.699 29.630 22.01 2.74 46.40 3.91
1544 2688 7.822658 AGCATACGGAAGTTTTAATTAAAGCA 58.177 30.769 22.01 3.39 46.40 3.91
1545 2689 9.434559 CTAGCATACGGAAGTTTTAATTAAAGC 57.565 33.333 14.86 14.86 46.40 3.51
1549 2693 9.880157 ACTTCTAGCATACGGAAGTTTTAATTA 57.120 29.630 0.00 0.00 46.40 1.40
1550 2694 8.788325 ACTTCTAGCATACGGAAGTTTTAATT 57.212 30.769 0.00 0.00 46.40 1.40
1551 2695 9.310716 GTACTTCTAGCATACGGAAGTTTTAAT 57.689 33.333 11.81 0.00 46.40 1.40
1552 2696 7.761249 GGTACTTCTAGCATACGGAAGTTTTAA 59.239 37.037 11.81 0.00 46.40 1.52
1553 2697 7.123247 AGGTACTTCTAGCATACGGAAGTTTTA 59.877 37.037 11.81 0.00 44.63 1.52
1554 2698 6.070938 AGGTACTTCTAGCATACGGAAGTTTT 60.071 38.462 11.81 0.00 44.63 2.43
1555 2699 5.421374 AGGTACTTCTAGCATACGGAAGTTT 59.579 40.000 11.81 0.00 44.63 2.66
1556 2700 4.954826 AGGTACTTCTAGCATACGGAAGTT 59.045 41.667 11.81 0.00 44.63 2.66
1558 2702 5.181622 CCTAGGTACTTCTAGCATACGGAAG 59.818 48.000 0.00 0.00 41.75 3.46
1570 2714 8.509441 TCTACCTTTTATAGCCTAGGTACTTCT 58.491 37.037 11.31 0.49 41.16 2.85
1571 2715 8.703378 TCTACCTTTTATAGCCTAGGTACTTC 57.297 38.462 11.31 0.00 41.16 3.01
1572 2716 9.498039 TTTCTACCTTTTATAGCCTAGGTACTT 57.502 33.333 11.31 0.00 41.16 2.24
1573 2717 9.671862 ATTTCTACCTTTTATAGCCTAGGTACT 57.328 33.333 11.31 2.09 41.16 2.73
1574 2718 9.708092 CATTTCTACCTTTTATAGCCTAGGTAC 57.292 37.037 11.31 0.00 41.16 3.34
1575 2719 9.664777 TCATTTCTACCTTTTATAGCCTAGGTA 57.335 33.333 11.31 2.05 41.16 3.08
1577 2721 8.871125 TCTCATTTCTACCTTTTATAGCCTAGG 58.129 37.037 3.67 3.67 0.00 3.02
1580 2724 9.566432 CATTCTCATTTCTACCTTTTATAGCCT 57.434 33.333 0.00 0.00 0.00 4.58
1588 2732 8.635765 TGCTTAACATTCTCATTTCTACCTTT 57.364 30.769 0.00 0.00 0.00 3.11
1592 2736 7.695618 CAGCTTGCTTAACATTCTCATTTCTAC 59.304 37.037 0.00 0.00 0.00 2.59
1594 2738 6.208204 ACAGCTTGCTTAACATTCTCATTTCT 59.792 34.615 0.00 0.00 0.00 2.52
1605 3016 3.882288 TGACAATGACAGCTTGCTTAACA 59.118 39.130 0.00 0.00 0.00 2.41
1607 3018 5.512753 TTTGACAATGACAGCTTGCTTAA 57.487 34.783 0.00 0.00 0.00 1.85
1634 3045 2.373169 AGCCTGACAGATGGAAAGTTGA 59.627 45.455 3.32 0.00 0.00 3.18
1666 3077 1.683790 CGGCGTTGTAGTGCTAGTGC 61.684 60.000 0.00 0.00 40.20 4.40
1667 3078 1.076533 CCGGCGTTGTAGTGCTAGTG 61.077 60.000 6.01 0.00 0.00 2.74
1668 3079 1.214589 CCGGCGTTGTAGTGCTAGT 59.785 57.895 6.01 0.00 0.00 2.57
1669 3080 0.801067 GACCGGCGTTGTAGTGCTAG 60.801 60.000 6.01 0.00 0.00 3.42
1670 3081 1.213537 GACCGGCGTTGTAGTGCTA 59.786 57.895 6.01 0.00 0.00 3.49
1671 3082 1.246056 TAGACCGGCGTTGTAGTGCT 61.246 55.000 6.01 0.00 0.00 4.40
1672 3083 0.388907 TTAGACCGGCGTTGTAGTGC 60.389 55.000 6.01 0.00 0.00 4.40
1676 3087 0.961019 ACACTTAGACCGGCGTTGTA 59.039 50.000 6.01 0.00 0.00 2.41
1797 3212 0.180406 GTTGTCGGCCATGGAGGTAT 59.820 55.000 18.40 0.00 40.61 2.73
1823 3238 2.438614 CACCTCGCTCTCTCCGGA 60.439 66.667 2.93 2.93 0.00 5.14
1941 3364 4.500116 GGTCGCTCCTCTCACGGC 62.500 72.222 0.00 0.00 0.00 5.68
2183 3606 6.872920 AGACAAAATTGTTGTTAGGCAGAAA 58.127 32.000 0.00 0.00 42.43 2.52
2185 3608 6.127479 ACAAGACAAAATTGTTGTTAGGCAGA 60.127 34.615 0.00 0.00 42.43 4.26
2335 4910 4.595762 AACAAGCATGTTCATTTCAGCT 57.404 36.364 0.51 0.00 46.78 4.24
2417 4992 1.610038 CACCATTGCTCTTGAACAGCA 59.390 47.619 0.00 0.00 45.32 4.41
2436 5011 2.283298 GCGGCTTCTTTCTGATCATCA 58.717 47.619 0.00 0.00 0.00 3.07
2443 5018 0.242017 CCCTTTGCGGCTTCTTTCTG 59.758 55.000 0.00 0.00 0.00 3.02
2499 5074 5.454045 GGAGAAGAAGTTCTTGTCTCCAAGT 60.454 44.000 31.62 7.26 43.76 3.16
2527 5102 4.286297 TGTCCAGAAATCCGAACTCATT 57.714 40.909 0.00 0.00 0.00 2.57
2553 5128 1.107945 TGCTCGATAACGGGATGACA 58.892 50.000 0.00 0.00 43.41 3.58
2583 5158 6.497785 TCAAACTTTCCTTGTTGTTCGTAA 57.502 33.333 0.00 0.00 0.00 3.18
2743 13605 4.471904 AGGTTTCGAGCACAATCTATGA 57.528 40.909 0.00 0.00 0.00 2.15
2789 13652 8.607459 GTGTGTCAAACAATAATAGATGGAGAG 58.393 37.037 0.00 0.00 41.57 3.20
2790 13653 8.100164 TGTGTGTCAAACAATAATAGATGGAGA 58.900 33.333 0.00 0.00 41.57 3.71
2929 13798 6.512415 GCACAGAGCACATATGTAAAAGGATC 60.512 42.308 8.32 4.19 44.79 3.36
3004 13873 2.272146 GGAGCTTTCCGATGCCCA 59.728 61.111 0.00 0.00 0.00 5.36
3102 13973 6.317893 CCCACCGTGCTAGTTTAAATAGAAAT 59.682 38.462 3.48 0.00 0.00 2.17
3106 13977 4.761975 TCCCACCGTGCTAGTTTAAATAG 58.238 43.478 0.00 0.00 0.00 1.73
3133 14004 5.487433 TGGACATCACAAAATAGACACGAT 58.513 37.500 0.00 0.00 0.00 3.73
3140 14011 9.865321 AGAATTGATTTGGACATCACAAAATAG 57.135 29.630 0.00 0.00 40.74 1.73
3248 14119 9.512435 GGCATATATTCATATGAAGTTTCATGC 57.488 33.333 25.98 25.98 46.68 4.06
3257 14128 6.724351 AGCACCAGGCATATATTCATATGAA 58.276 36.000 20.07 20.07 44.70 2.57
3273 14144 9.736023 GATCTTTATAACAAATTAAGCACCAGG 57.264 33.333 0.00 0.00 0.00 4.45
3331 14202 4.042311 TGGCTTACATCTCAACAAGGGTAA 59.958 41.667 0.00 0.00 0.00 2.85
3335 14206 5.452078 TTTTGGCTTACATCTCAACAAGG 57.548 39.130 0.00 0.00 0.00 3.61
3360 14231 5.162991 TGGGGGAAATAAATAGGAGGATGTG 60.163 44.000 0.00 0.00 0.00 3.21
3363 14234 6.571970 AGAATGGGGGAAATAAATAGGAGGAT 59.428 38.462 0.00 0.00 0.00 3.24
3368 14239 9.174166 CGTATTAGAATGGGGGAAATAAATAGG 57.826 37.037 0.00 0.00 0.00 2.57
3391 14262 7.422878 TGTTGCATGTCTAAAACATTACGTA 57.577 32.000 0.00 0.00 46.73 3.57
3419 14290 8.992073 GGTCAAAGTTGCATATTTTGAGATTTT 58.008 29.630 16.40 0.00 40.36 1.82
3510 14381 1.503542 CCATCAGTTGGTTCGCTGC 59.496 57.895 0.00 0.00 40.99 5.25
3523 14394 2.246469 CAACCAACCATCCAACCATCA 58.754 47.619 0.00 0.00 0.00 3.07
3525 14396 1.148867 TCCAACCAACCATCCAACCAT 59.851 47.619 0.00 0.00 0.00 3.55
3558 14429 1.202879 TGACTTAAACCTGGTGGGCTG 60.203 52.381 0.00 0.00 39.10 4.85
3572 14443 2.401583 AATGCGAGCACCATGACTTA 57.598 45.000 0.00 0.00 0.00 2.24
3578 14449 2.620115 CAGGAATAAATGCGAGCACCAT 59.380 45.455 0.00 0.00 0.00 3.55
3641 14512 3.334691 TCGTTGTCAATGGGAATGTCTC 58.665 45.455 4.95 0.00 0.00 3.36
3648 14519 0.669318 GCGTCTCGTTGTCAATGGGA 60.669 55.000 3.04 3.04 0.00 4.37
3652 14523 1.531149 CAAAGGCGTCTCGTTGTCAAT 59.469 47.619 0.00 0.00 0.00 2.57
3658 14529 0.878961 GTCACCAAAGGCGTCTCGTT 60.879 55.000 0.00 0.00 0.00 3.85
3660 14531 0.600255 AAGTCACCAAAGGCGTCTCG 60.600 55.000 0.00 0.00 0.00 4.04
3663 14534 0.878961 ACGAAGTCACCAAAGGCGTC 60.879 55.000 0.00 0.00 29.74 5.19
3664 14535 1.145377 ACGAAGTCACCAAAGGCGT 59.855 52.632 0.00 0.00 29.74 5.68
3680 14551 5.017612 CGACATGTCATTTTGAGATTGACG 58.982 41.667 24.93 2.49 40.07 4.35
3709 14580 2.500229 CTATGAGGACCTCCGAGAGAC 58.500 57.143 19.11 0.00 42.08 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.