Multiple sequence alignment - TraesCS2D01G589300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G589300 chr2D 100.000 2874 0 0 1 2874 645892324 645895197 0.000000e+00 5308.0
1 TraesCS2D01G589300 chr2D 82.392 1045 126 26 816 1831 645947610 645948625 0.000000e+00 857.0
2 TraesCS2D01G589300 chr2D 82.073 357 56 4 1504 1853 645853086 645853441 6.020000e-77 298.0
3 TraesCS2D01G589300 chr2D 89.683 126 12 1 816 941 645931944 645932068 2.960000e-35 159.0
4 TraesCS2D01G589300 chr2A 93.211 1694 61 20 853 2517 771609290 771610958 0.000000e+00 2442.0
5 TraesCS2D01G589300 chr2A 81.130 1044 127 25 816 1831 771712675 771713676 0.000000e+00 773.0
6 TraesCS2D01G589300 chr2A 97.853 326 7 0 2549 2874 771618517 771618842 5.380000e-157 564.0
7 TraesCS2D01G589300 chr2A 96.748 246 1 2 1 246 586916413 586916175 1.240000e-108 403.0
8 TraesCS2D01G589300 chr2A 95.726 234 7 2 272 503 586916175 586915943 9.720000e-100 374.0
9 TraesCS2D01G589300 chr2A 90.377 239 14 6 572 805 771712390 771712624 3.600000e-79 305.0
10 TraesCS2D01G589300 chr2A 93.714 175 5 5 640 812 771598888 771599058 1.020000e-64 257.0
11 TraesCS2D01G589300 chr2A 81.955 133 16 7 816 943 771676874 771677003 3.920000e-19 106.0
12 TraesCS2D01G589300 chr2A 85.263 95 10 4 431 525 315764934 315764844 8.480000e-16 95.3
13 TraesCS2D01G589300 chr2A 80.916 131 11 13 431 549 1604745 1604617 1.100000e-14 91.6
14 TraesCS2D01G589300 chr2B 91.022 802 42 9 1099 1888 789670346 789669563 0.000000e+00 1055.0
15 TraesCS2D01G589300 chr2B 91.321 530 18 10 1883 2408 789669454 789668949 0.000000e+00 699.0
16 TraesCS2D01G589300 chr2B 82.397 801 101 17 1052 1831 789602117 789601336 0.000000e+00 662.0
17 TraesCS2D01G589300 chr2B 87.395 238 30 0 1091 1328 789609676 789609439 1.010000e-69 274.0
18 TraesCS2D01G589300 chr2B 84.028 144 14 4 816 959 789620543 789620409 2.320000e-26 130.0
19 TraesCS2D01G589300 chr2B 85.714 84 10 2 570 651 789611793 789611710 1.420000e-13 87.9
20 TraesCS2D01G589300 chr6D 97.238 543 13 2 1 542 291696821 291696280 0.000000e+00 918.0
21 TraesCS2D01G589300 chr6D 97.082 514 7 3 1 506 86720267 86720780 0.000000e+00 859.0
22 TraesCS2D01G589300 chr3D 98.608 503 7 0 1 503 313815184 313814682 0.000000e+00 891.0
23 TraesCS2D01G589300 chr3D 93.058 533 7 5 1 503 141352404 141351872 0.000000e+00 752.0
24 TraesCS2D01G589300 chr7D 97.614 503 12 0 1 503 340231399 340230897 0.000000e+00 863.0
25 TraesCS2D01G589300 chr7D 96.457 508 13 2 1 503 488086554 488087061 0.000000e+00 833.0
26 TraesCS2D01G589300 chr1D 99.267 273 2 0 1 273 26201124 26200852 7.150000e-136 494.0
27 TraesCS2D01G589300 chr1D 98.165 218 4 0 259 476 26200838 26200621 5.810000e-102 381.0
28 TraesCS2D01G589300 chr5D 98.134 268 5 0 1 268 435245441 435245708 4.340000e-128 468.0
29 TraesCS2D01G589300 chr5D 98.776 245 3 0 259 503 435245728 435245972 1.220000e-118 436.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G589300 chr2D 645892324 645895197 2873 False 5308.0 5308 100.0000 1 2874 1 chr2D.!!$F2 2873
1 TraesCS2D01G589300 chr2D 645947610 645948625 1015 False 857.0 857 82.3920 816 1831 1 chr2D.!!$F4 1015
2 TraesCS2D01G589300 chr2A 771609290 771610958 1668 False 2442.0 2442 93.2110 853 2517 1 chr2A.!!$F2 1664
3 TraesCS2D01G589300 chr2A 771712390 771713676 1286 False 539.0 773 85.7535 572 1831 2 chr2A.!!$F5 1259
4 TraesCS2D01G589300 chr2B 789668949 789670346 1397 True 877.0 1055 91.1715 1099 2408 2 chr2B.!!$R4 1309
5 TraesCS2D01G589300 chr2B 789601336 789602117 781 True 662.0 662 82.3970 1052 1831 1 chr2B.!!$R1 779
6 TraesCS2D01G589300 chr6D 291696280 291696821 541 True 918.0 918 97.2380 1 542 1 chr6D.!!$R1 541
7 TraesCS2D01G589300 chr6D 86720267 86720780 513 False 859.0 859 97.0820 1 506 1 chr6D.!!$F1 505
8 TraesCS2D01G589300 chr3D 313814682 313815184 502 True 891.0 891 98.6080 1 503 1 chr3D.!!$R2 502
9 TraesCS2D01G589300 chr3D 141351872 141352404 532 True 752.0 752 93.0580 1 503 1 chr3D.!!$R1 502
10 TraesCS2D01G589300 chr7D 340230897 340231399 502 True 863.0 863 97.6140 1 503 1 chr7D.!!$R1 502
11 TraesCS2D01G589300 chr7D 488086554 488087061 507 False 833.0 833 96.4570 1 503 1 chr7D.!!$F1 502
12 TraesCS2D01G589300 chr1D 26200621 26201124 503 True 437.5 494 98.7160 1 476 2 chr1D.!!$R1 475
13 TraesCS2D01G589300 chr5D 435245441 435245972 531 False 452.0 468 98.4550 1 503 2 chr5D.!!$F1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 907 0.035739 TGGAGAAAAGTACCGGTGCC 59.964 55.0 19.93 7.78 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2638 2894 0.038166 TCCTGTGCCCCAAGTCATTC 59.962 55.0 0.0 0.0 0.0 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 309 4.854291 CGTGCTTTTCTACAACAAACACAA 59.146 37.500 0.00 0.00 0.00 3.33
503 543 8.942338 ACAAAGTCGATCTGTGCTTTATTATA 57.058 30.769 5.43 0.00 34.88 0.98
504 544 9.547753 ACAAAGTCGATCTGTGCTTTATTATAT 57.452 29.630 5.43 0.00 34.88 0.86
590 630 5.853936 AGATATTCAACTAGGCATGCGTTA 58.146 37.500 19.28 9.18 0.00 3.18
603 643 3.262420 CATGCGTTAGCTACTTGGAACT 58.738 45.455 0.00 0.00 45.42 3.01
681 721 1.138464 GATAGGGACCGACTTTCCACC 59.862 57.143 0.00 0.00 34.45 4.61
682 722 0.115745 TAGGGACCGACTTTCCACCT 59.884 55.000 0.00 0.00 34.45 4.00
683 723 1.003718 GGGACCGACTTTCCACCTG 60.004 63.158 0.00 0.00 34.45 4.00
703 743 3.266636 TGTCGGGCATATACAACAACAG 58.733 45.455 0.00 0.00 0.00 3.16
706 746 1.333619 GGGCATATACAACAACAGCGG 59.666 52.381 0.00 0.00 0.00 5.52
753 793 0.883153 GTGTGTCAGCCATGATGCAA 59.117 50.000 0.00 0.00 37.87 4.08
754 794 1.475280 GTGTGTCAGCCATGATGCAAT 59.525 47.619 0.00 0.00 37.87 3.56
755 795 1.474879 TGTGTCAGCCATGATGCAATG 59.525 47.619 0.00 0.00 37.87 2.82
775 819 1.474855 GGAAAGCAGCAGGATCTCCTC 60.475 57.143 0.00 0.00 46.65 3.71
782 826 3.860378 GCAGCAGGATCTCCTCTAAATCG 60.860 52.174 0.00 0.00 46.65 3.34
785 829 3.648009 CAGGATCTCCTCTAAATCGCAC 58.352 50.000 0.00 0.00 46.65 5.34
805 849 0.530744 ATGTGCTGCCTTCTTGCATG 59.469 50.000 0.00 0.00 41.16 4.06
806 850 1.214589 GTGCTGCCTTCTTGCATGG 59.785 57.895 0.00 0.00 41.16 3.66
808 852 0.963856 TGCTGCCTTCTTGCATGGAG 60.964 55.000 0.71 0.71 41.16 3.86
811 855 2.165167 CTGCCTTCTTGCATGGAGAAA 58.835 47.619 9.47 0.00 41.16 2.52
812 856 2.559668 CTGCCTTCTTGCATGGAGAAAA 59.440 45.455 9.47 0.00 41.16 2.29
813 857 2.559668 TGCCTTCTTGCATGGAGAAAAG 59.440 45.455 9.47 0.90 36.04 2.27
814 858 2.560105 GCCTTCTTGCATGGAGAAAAGT 59.440 45.455 9.47 0.00 33.10 2.66
819 903 2.107950 TGCATGGAGAAAAGTACCGG 57.892 50.000 0.00 0.00 0.00 5.28
823 907 0.035739 TGGAGAAAAGTACCGGTGCC 59.964 55.000 19.93 7.78 0.00 5.01
826 910 0.763035 AGAAAAGTACCGGTGCCTGT 59.237 50.000 19.93 0.00 0.00 4.00
830 914 0.690762 AAGTACCGGTGCCTGTCAAT 59.309 50.000 19.93 0.00 0.00 2.57
840 924 5.277974 CCGGTGCCTGTCAATGAATATTAAG 60.278 44.000 0.00 0.00 0.00 1.85
842 926 5.207768 GTGCCTGTCAATGAATATTAAGCG 58.792 41.667 0.00 0.00 0.00 4.68
941 1026 2.554142 GTCAGACATGATGCCATCGAA 58.446 47.619 0.00 0.00 37.87 3.71
942 1027 2.286294 GTCAGACATGATGCCATCGAAC 59.714 50.000 0.00 0.00 37.87 3.95
943 1028 1.600957 CAGACATGATGCCATCGAACC 59.399 52.381 0.00 0.00 0.00 3.62
944 1029 0.947244 GACATGATGCCATCGAACCC 59.053 55.000 0.00 0.00 0.00 4.11
966 1051 1.071471 AGTGGAGCTGGTTGGTTCG 59.929 57.895 0.00 0.00 0.00 3.95
994 1084 9.283768 CTATATATAAATCCCAGTTGTGTGCAA 57.716 33.333 0.00 0.00 0.00 4.08
1006 1103 1.948834 TGTGTGCAATGACCAGAGTTG 59.051 47.619 0.00 0.00 0.00 3.16
1054 1161 1.694150 CACCTTGAAGACAGGACAGGA 59.306 52.381 0.00 0.00 0.00 3.86
1075 1182 2.725221 ATGGAGAAAGCCATGGAGAC 57.275 50.000 18.40 3.13 46.62 3.36
1076 1183 0.250234 TGGAGAAAGCCATGGAGACG 59.750 55.000 18.40 0.00 31.66 4.18
1077 1184 0.462759 GGAGAAAGCCATGGAGACGG 60.463 60.000 18.40 0.00 0.00 4.79
1078 1185 0.537188 GAGAAAGCCATGGAGACGGA 59.463 55.000 18.40 0.00 0.00 4.69
1079 1186 0.539051 AGAAAGCCATGGAGACGGAG 59.461 55.000 18.40 0.00 0.00 4.63
1184 1291 2.423031 CGTGGCGTTCGAGTACGTG 61.423 63.158 10.99 0.00 43.22 4.49
1468 1582 0.094558 TTGTTTCGTCGATGCGATGC 59.905 50.000 0.00 0.00 41.89 3.91
1472 1586 0.523757 TTCGTCGATGCGATGCGTTA 60.524 50.000 0.00 0.00 41.89 3.18
1479 1593 5.442260 CGTCGATGCGATGCGTTAATTTATA 60.442 40.000 0.00 0.00 38.42 0.98
1480 1594 6.466812 GTCGATGCGATGCGTTAATTTATAT 58.533 36.000 0.00 0.00 38.42 0.86
1481 1595 6.405191 GTCGATGCGATGCGTTAATTTATATG 59.595 38.462 0.00 0.00 38.42 1.78
1483 1597 6.621017 CGATGCGATGCGTTAATTTATATGAG 59.379 38.462 0.00 0.00 0.00 2.90
1484 1598 6.779115 TGCGATGCGTTAATTTATATGAGT 57.221 33.333 0.00 0.00 0.00 3.41
1535 1651 0.521735 GCGCCCAAGTAAGGTTTCTG 59.478 55.000 0.00 0.00 0.00 3.02
1701 1829 1.869690 GAGCAGCTTGGACGGTTTC 59.130 57.895 0.00 0.00 0.00 2.78
1834 1962 4.110482 CACTTGTACGGTATTGAGTAGCC 58.890 47.826 0.00 0.00 0.00 3.93
1995 2242 8.372459 AGACACCGGCATATATACTTATTTTCA 58.628 33.333 0.00 0.00 0.00 2.69
2057 2304 6.655930 AGTGACTCTTTCCTACTAGTAGAGG 58.344 44.000 28.07 17.22 37.30 3.69
2059 2306 5.491800 TGACTCTTTCCTACTAGTAGAGGGT 59.508 44.000 28.07 22.66 37.30 4.34
2060 2307 6.011805 TGACTCTTTCCTACTAGTAGAGGGTT 60.012 42.308 28.07 10.41 37.30 4.11
2061 2308 6.425735 ACTCTTTCCTACTAGTAGAGGGTTC 58.574 44.000 28.07 0.00 37.30 3.62
2105 2354 6.398918 TCCTCTGCTGTTTAATCTTGTAGTC 58.601 40.000 0.00 0.00 0.00 2.59
2154 2403 3.502211 AGCTACAAGTTTTGGATTGGTCG 59.498 43.478 0.00 0.00 34.12 4.79
2169 2418 2.462723 TGGTCGAAGGTCCATGTCATA 58.537 47.619 0.00 0.00 0.00 2.15
2302 2551 2.349886 GCAAGTGTCCGTGATGAAGATC 59.650 50.000 0.00 0.00 0.00 2.75
2348 2597 2.357050 CCATTGAATCTAGCACCCCACA 60.357 50.000 0.00 0.00 0.00 4.17
2437 2689 5.643379 TTGCTCTTCACTTTGACAAGTTT 57.357 34.783 0.00 0.00 40.66 2.66
2504 2760 0.628668 AGCTGGATGGAGGGGGAAAT 60.629 55.000 0.00 0.00 0.00 2.17
2510 2766 2.470990 GATGGAGGGGGAAATTGCTTT 58.529 47.619 0.00 0.00 0.00 3.51
2512 2768 1.432807 TGGAGGGGGAAATTGCTTTCT 59.567 47.619 0.00 0.00 40.55 2.52
2517 2773 5.897250 GGAGGGGGAAATTGCTTTCTTATAA 59.103 40.000 0.00 0.00 40.55 0.98
2518 2774 6.040955 GGAGGGGGAAATTGCTTTCTTATAAG 59.959 42.308 6.11 6.11 40.55 1.73
2519 2775 5.899547 AGGGGGAAATTGCTTTCTTATAAGG 59.100 40.000 12.54 0.00 40.55 2.69
2520 2776 5.070446 GGGGGAAATTGCTTTCTTATAAGGG 59.930 44.000 12.54 4.96 40.55 3.95
2521 2777 5.453339 GGGGAAATTGCTTTCTTATAAGGGC 60.453 44.000 12.54 13.74 40.55 5.19
2522 2778 5.128663 GGGAAATTGCTTTCTTATAAGGGCA 59.871 40.000 12.54 15.80 40.55 5.36
2523 2779 6.276091 GGAAATTGCTTTCTTATAAGGGCAG 58.724 40.000 19.58 12.30 40.55 4.85
2524 2780 5.859205 AATTGCTTTCTTATAAGGGCAGG 57.141 39.130 19.58 6.80 32.05 4.85
2525 2781 4.584638 TTGCTTTCTTATAAGGGCAGGA 57.415 40.909 19.58 10.61 32.05 3.86
2526 2782 4.796110 TGCTTTCTTATAAGGGCAGGAT 57.204 40.909 12.54 0.00 0.00 3.24
2527 2783 4.718961 TGCTTTCTTATAAGGGCAGGATC 58.281 43.478 12.54 0.00 0.00 3.36
2528 2784 4.165950 TGCTTTCTTATAAGGGCAGGATCA 59.834 41.667 12.54 0.00 0.00 2.92
2529 2785 5.163055 TGCTTTCTTATAAGGGCAGGATCAT 60.163 40.000 12.54 0.00 0.00 2.45
2530 2786 5.772169 GCTTTCTTATAAGGGCAGGATCATT 59.228 40.000 12.54 0.00 0.00 2.57
2531 2787 6.266330 GCTTTCTTATAAGGGCAGGATCATTT 59.734 38.462 12.54 0.00 0.00 2.32
2532 2788 7.201947 GCTTTCTTATAAGGGCAGGATCATTTT 60.202 37.037 12.54 0.00 0.00 1.82
2533 2789 9.354673 CTTTCTTATAAGGGCAGGATCATTTTA 57.645 33.333 12.54 0.00 0.00 1.52
2534 2790 9.707957 TTTCTTATAAGGGCAGGATCATTTTAA 57.292 29.630 12.54 0.00 0.00 1.52
2535 2791 9.881773 TTCTTATAAGGGCAGGATCATTTTAAT 57.118 29.630 12.54 0.00 0.00 1.40
2536 2792 9.881773 TCTTATAAGGGCAGGATCATTTTAATT 57.118 29.630 12.54 0.00 0.00 1.40
2542 2798 7.966812 AGGGCAGGATCATTTTAATTAAATCC 58.033 34.615 15.90 15.90 34.19 3.01
2543 2799 7.016563 AGGGCAGGATCATTTTAATTAAATCCC 59.983 37.037 18.46 13.47 34.19 3.85
2544 2800 7.202084 GGGCAGGATCATTTTAATTAAATCCCA 60.202 37.037 18.46 4.24 34.19 4.37
2545 2801 8.377799 GGCAGGATCATTTTAATTAAATCCCAT 58.622 33.333 18.46 6.04 34.19 4.00
2546 2802 9.783081 GCAGGATCATTTTAATTAAATCCCATT 57.217 29.630 18.46 4.59 34.19 3.16
2555 2811 9.950496 TTTTAATTAAATCCCATTTAGCAAGCA 57.050 25.926 11.33 0.00 36.23 3.91
2557 2813 9.762933 TTAATTAAATCCCATTTAGCAAGCATC 57.237 29.630 0.00 0.00 36.23 3.91
2558 2814 4.677673 AAATCCCATTTAGCAAGCATCC 57.322 40.909 0.00 0.00 0.00 3.51
2559 2815 2.071778 TCCCATTTAGCAAGCATCCC 57.928 50.000 0.00 0.00 0.00 3.85
2560 2816 1.043022 CCCATTTAGCAAGCATCCCC 58.957 55.000 0.00 0.00 0.00 4.81
2561 2817 1.688942 CCCATTTAGCAAGCATCCCCA 60.689 52.381 0.00 0.00 0.00 4.96
2562 2818 2.322658 CCATTTAGCAAGCATCCCCAT 58.677 47.619 0.00 0.00 0.00 4.00
2563 2819 2.298163 CCATTTAGCAAGCATCCCCATC 59.702 50.000 0.00 0.00 0.00 3.51
2564 2820 3.228453 CATTTAGCAAGCATCCCCATCT 58.772 45.455 0.00 0.00 0.00 2.90
2565 2821 4.401022 CATTTAGCAAGCATCCCCATCTA 58.599 43.478 0.00 0.00 0.00 1.98
2566 2822 3.492102 TTAGCAAGCATCCCCATCTAC 57.508 47.619 0.00 0.00 0.00 2.59
2567 2823 1.516110 AGCAAGCATCCCCATCTACT 58.484 50.000 0.00 0.00 0.00 2.57
2568 2824 1.849039 AGCAAGCATCCCCATCTACTT 59.151 47.619 0.00 0.00 0.00 2.24
2569 2825 1.952296 GCAAGCATCCCCATCTACTTG 59.048 52.381 0.00 0.00 38.00 3.16
2570 2826 2.421952 GCAAGCATCCCCATCTACTTGA 60.422 50.000 4.83 0.00 37.32 3.02
2571 2827 3.749954 GCAAGCATCCCCATCTACTTGAT 60.750 47.826 4.83 0.00 37.32 2.57
2572 2828 4.070716 CAAGCATCCCCATCTACTTGATC 58.929 47.826 0.00 0.00 37.32 2.92
2573 2829 3.596101 AGCATCCCCATCTACTTGATCT 58.404 45.455 0.00 0.00 32.05 2.75
2574 2830 3.582208 AGCATCCCCATCTACTTGATCTC 59.418 47.826 0.00 0.00 32.05 2.75
2575 2831 3.307339 GCATCCCCATCTACTTGATCTCC 60.307 52.174 0.00 0.00 32.05 3.71
2576 2832 4.166539 CATCCCCATCTACTTGATCTCCT 58.833 47.826 0.00 0.00 32.05 3.69
2577 2833 4.286813 TCCCCATCTACTTGATCTCCTT 57.713 45.455 0.00 0.00 32.05 3.36
2578 2834 4.635473 TCCCCATCTACTTGATCTCCTTT 58.365 43.478 0.00 0.00 32.05 3.11
2579 2835 5.039645 TCCCCATCTACTTGATCTCCTTTT 58.960 41.667 0.00 0.00 32.05 2.27
2580 2836 5.492524 TCCCCATCTACTTGATCTCCTTTTT 59.507 40.000 0.00 0.00 32.05 1.94
2581 2837 5.825151 CCCCATCTACTTGATCTCCTTTTTC 59.175 44.000 0.00 0.00 32.05 2.29
2582 2838 6.418101 CCCATCTACTTGATCTCCTTTTTCA 58.582 40.000 0.00 0.00 32.05 2.69
2583 2839 6.886459 CCCATCTACTTGATCTCCTTTTTCAA 59.114 38.462 0.00 0.00 32.05 2.69
2589 2845 6.018589 CTTGATCTCCTTTTTCAAGTTCCC 57.981 41.667 0.00 0.00 40.80 3.97
2590 2846 4.407365 TGATCTCCTTTTTCAAGTTCCCC 58.593 43.478 0.00 0.00 0.00 4.81
2591 2847 3.963476 TCTCCTTTTTCAAGTTCCCCA 57.037 42.857 0.00 0.00 0.00 4.96
2592 2848 4.258457 TCTCCTTTTTCAAGTTCCCCAA 57.742 40.909 0.00 0.00 0.00 4.12
2593 2849 4.215109 TCTCCTTTTTCAAGTTCCCCAAG 58.785 43.478 0.00 0.00 0.00 3.61
2594 2850 3.960755 CTCCTTTTTCAAGTTCCCCAAGT 59.039 43.478 0.00 0.00 0.00 3.16
2595 2851 3.704061 TCCTTTTTCAAGTTCCCCAAGTG 59.296 43.478 0.00 0.00 0.00 3.16
2596 2852 3.181466 CCTTTTTCAAGTTCCCCAAGTGG 60.181 47.826 0.00 0.00 0.00 4.00
2608 2864 2.514458 CCAAGTGGGCTATTGACCTT 57.486 50.000 0.00 0.00 43.49 3.50
2609 2865 3.644966 CCAAGTGGGCTATTGACCTTA 57.355 47.619 0.00 0.00 43.49 2.69
2610 2866 3.545703 CCAAGTGGGCTATTGACCTTAG 58.454 50.000 0.00 0.00 43.49 2.18
2611 2867 3.054361 CCAAGTGGGCTATTGACCTTAGT 60.054 47.826 0.00 0.00 43.49 2.24
2612 2868 4.163458 CCAAGTGGGCTATTGACCTTAGTA 59.837 45.833 0.00 0.00 43.49 1.82
2613 2869 5.338871 CCAAGTGGGCTATTGACCTTAGTAA 60.339 44.000 0.00 0.00 43.49 2.24
2614 2870 6.357367 CAAGTGGGCTATTGACCTTAGTAAT 58.643 40.000 0.00 0.00 43.49 1.89
2615 2871 6.576778 AGTGGGCTATTGACCTTAGTAATT 57.423 37.500 0.00 0.00 43.49 1.40
2616 2872 6.592870 AGTGGGCTATTGACCTTAGTAATTC 58.407 40.000 0.00 0.00 43.49 2.17
2617 2873 6.387220 AGTGGGCTATTGACCTTAGTAATTCT 59.613 38.462 0.00 0.00 43.49 2.40
2618 2874 6.706716 GTGGGCTATTGACCTTAGTAATTCTC 59.293 42.308 0.00 0.00 43.49 2.87
2619 2875 6.385759 TGGGCTATTGACCTTAGTAATTCTCA 59.614 38.462 0.00 0.00 43.49 3.27
2620 2876 7.092623 TGGGCTATTGACCTTAGTAATTCTCAA 60.093 37.037 0.00 0.00 43.49 3.02
2621 2877 7.773690 GGGCTATTGACCTTAGTAATTCTCAAA 59.226 37.037 0.00 0.00 38.69 2.69
2622 2878 9.343539 GGCTATTGACCTTAGTAATTCTCAAAT 57.656 33.333 0.00 0.00 0.00 2.32
2626 2882 9.965902 ATTGACCTTAGTAATTCTCAAATGACT 57.034 29.630 0.00 0.00 39.51 3.41
2633 2889 9.944376 TTAGTAATTCTCAAATGACTAACTGCT 57.056 29.630 4.63 0.00 41.17 4.24
2634 2890 8.854614 AGTAATTCTCAAATGACTAACTGCTT 57.145 30.769 0.00 0.00 35.17 3.91
2635 2891 8.725148 AGTAATTCTCAAATGACTAACTGCTTG 58.275 33.333 0.00 0.00 35.17 4.01
2636 2892 7.516198 AATTCTCAAATGACTAACTGCTTGT 57.484 32.000 0.00 0.00 0.00 3.16
2637 2893 5.929697 TCTCAAATGACTAACTGCTTGTG 57.070 39.130 0.00 0.00 0.00 3.33
2638 2894 4.756642 TCTCAAATGACTAACTGCTTGTGG 59.243 41.667 0.00 0.00 0.00 4.17
2639 2895 4.713553 TCAAATGACTAACTGCTTGTGGA 58.286 39.130 0.00 0.00 0.00 4.02
2640 2896 5.129634 TCAAATGACTAACTGCTTGTGGAA 58.870 37.500 0.00 0.00 0.00 3.53
2641 2897 5.769662 TCAAATGACTAACTGCTTGTGGAAT 59.230 36.000 0.00 0.00 0.00 3.01
2642 2898 5.633830 AATGACTAACTGCTTGTGGAATG 57.366 39.130 0.00 0.00 0.00 2.67
2643 2899 4.350368 TGACTAACTGCTTGTGGAATGA 57.650 40.909 0.00 0.00 0.00 2.57
2644 2900 4.065088 TGACTAACTGCTTGTGGAATGAC 58.935 43.478 0.00 0.00 0.00 3.06
2645 2901 4.202357 TGACTAACTGCTTGTGGAATGACT 60.202 41.667 0.00 0.00 0.00 3.41
2646 2902 4.718961 ACTAACTGCTTGTGGAATGACTT 58.281 39.130 0.00 0.00 0.00 3.01
2647 2903 3.996150 AACTGCTTGTGGAATGACTTG 57.004 42.857 0.00 0.00 0.00 3.16
2648 2904 2.233271 ACTGCTTGTGGAATGACTTGG 58.767 47.619 0.00 0.00 0.00 3.61
2649 2905 1.542915 CTGCTTGTGGAATGACTTGGG 59.457 52.381 0.00 0.00 0.00 4.12
2650 2906 0.890683 GCTTGTGGAATGACTTGGGG 59.109 55.000 0.00 0.00 0.00 4.96
2651 2907 0.890683 CTTGTGGAATGACTTGGGGC 59.109 55.000 0.00 0.00 0.00 5.80
2652 2908 0.187117 TTGTGGAATGACTTGGGGCA 59.813 50.000 0.00 0.00 0.00 5.36
2653 2909 0.539438 TGTGGAATGACTTGGGGCAC 60.539 55.000 0.00 0.00 0.00 5.01
2654 2910 0.539438 GTGGAATGACTTGGGGCACA 60.539 55.000 0.00 0.00 0.00 4.57
2655 2911 0.251297 TGGAATGACTTGGGGCACAG 60.251 55.000 0.00 0.00 0.00 3.66
2656 2912 0.967380 GGAATGACTTGGGGCACAGG 60.967 60.000 0.00 0.00 0.00 4.00
2657 2913 0.038166 GAATGACTTGGGGCACAGGA 59.962 55.000 5.62 0.00 0.00 3.86
2658 2914 0.482446 AATGACTTGGGGCACAGGAA 59.518 50.000 5.62 0.00 0.00 3.36
2659 2915 0.482446 ATGACTTGGGGCACAGGAAA 59.518 50.000 5.62 0.00 0.00 3.13
2660 2916 0.260230 TGACTTGGGGCACAGGAAAA 59.740 50.000 5.62 0.00 0.00 2.29
2661 2917 1.133199 TGACTTGGGGCACAGGAAAAT 60.133 47.619 5.62 0.00 0.00 1.82
2662 2918 1.970640 GACTTGGGGCACAGGAAAATT 59.029 47.619 5.62 0.00 0.00 1.82
2663 2919 1.970640 ACTTGGGGCACAGGAAAATTC 59.029 47.619 5.62 0.00 0.00 2.17
2664 2920 1.969923 CTTGGGGCACAGGAAAATTCA 59.030 47.619 0.00 0.00 0.00 2.57
2665 2921 2.323999 TGGGGCACAGGAAAATTCAT 57.676 45.000 0.00 0.00 0.00 2.57
2666 2922 2.178580 TGGGGCACAGGAAAATTCATC 58.821 47.619 0.00 0.00 0.00 2.92
2667 2923 2.225343 TGGGGCACAGGAAAATTCATCT 60.225 45.455 0.00 0.00 0.00 2.90
2668 2924 3.011144 TGGGGCACAGGAAAATTCATCTA 59.989 43.478 0.00 0.00 0.00 1.98
2669 2925 3.633986 GGGGCACAGGAAAATTCATCTAG 59.366 47.826 0.00 0.00 0.00 2.43
2670 2926 3.067320 GGGCACAGGAAAATTCATCTAGC 59.933 47.826 0.00 0.00 0.00 3.42
2671 2927 3.950395 GGCACAGGAAAATTCATCTAGCT 59.050 43.478 0.00 0.00 0.00 3.32
2672 2928 5.126067 GGCACAGGAAAATTCATCTAGCTA 58.874 41.667 0.00 0.00 0.00 3.32
2673 2929 5.590259 GGCACAGGAAAATTCATCTAGCTAA 59.410 40.000 0.00 0.00 0.00 3.09
2674 2930 6.458888 GGCACAGGAAAATTCATCTAGCTAAC 60.459 42.308 0.00 0.00 0.00 2.34
2675 2931 6.317391 GCACAGGAAAATTCATCTAGCTAACT 59.683 38.462 0.00 0.00 0.00 2.24
2676 2932 7.678218 GCACAGGAAAATTCATCTAGCTAACTG 60.678 40.741 0.00 0.00 0.00 3.16
2677 2933 6.825721 ACAGGAAAATTCATCTAGCTAACTGG 59.174 38.462 0.00 0.00 0.00 4.00
2678 2934 5.825151 AGGAAAATTCATCTAGCTAACTGGC 59.175 40.000 0.00 0.00 0.00 4.85
2679 2935 5.590259 GGAAAATTCATCTAGCTAACTGGCA 59.410 40.000 0.00 0.00 34.17 4.92
2680 2936 6.095440 GGAAAATTCATCTAGCTAACTGGCAA 59.905 38.462 0.00 0.00 34.17 4.52
2681 2937 6.442513 AAATTCATCTAGCTAACTGGCAAC 57.557 37.500 0.00 0.00 34.17 4.17
2682 2938 4.826274 TTCATCTAGCTAACTGGCAACT 57.174 40.909 0.00 0.00 37.61 3.16
2683 2939 4.826274 TCATCTAGCTAACTGGCAACTT 57.174 40.909 0.00 0.00 37.61 2.66
2684 2940 4.507710 TCATCTAGCTAACTGGCAACTTG 58.492 43.478 0.00 0.00 37.61 3.16
2685 2941 4.020218 TCATCTAGCTAACTGGCAACTTGT 60.020 41.667 0.00 0.00 37.61 3.16
2686 2942 3.664107 TCTAGCTAACTGGCAACTTGTG 58.336 45.455 0.00 0.00 37.61 3.33
2687 2943 2.348411 AGCTAACTGGCAACTTGTGT 57.652 45.000 0.00 0.00 37.61 3.72
2688 2944 1.949525 AGCTAACTGGCAACTTGTGTG 59.050 47.619 0.00 0.00 37.61 3.82
2689 2945 1.676006 GCTAACTGGCAACTTGTGTGT 59.324 47.619 0.00 0.00 37.61 3.72
2690 2946 2.875933 GCTAACTGGCAACTTGTGTGTA 59.124 45.455 0.00 0.00 37.61 2.90
2691 2947 3.502211 GCTAACTGGCAACTTGTGTGTAT 59.498 43.478 0.00 0.00 37.61 2.29
2692 2948 3.988379 AACTGGCAACTTGTGTGTATG 57.012 42.857 0.00 0.00 37.61 2.39
2693 2949 3.207265 ACTGGCAACTTGTGTGTATGA 57.793 42.857 0.00 0.00 37.61 2.15
2694 2950 3.141398 ACTGGCAACTTGTGTGTATGAG 58.859 45.455 0.00 0.00 37.61 2.90
2695 2951 3.181455 ACTGGCAACTTGTGTGTATGAGA 60.181 43.478 0.00 0.00 37.61 3.27
2696 2952 3.138304 TGGCAACTTGTGTGTATGAGAC 58.862 45.455 0.00 0.00 37.61 3.36
2697 2953 3.138304 GGCAACTTGTGTGTATGAGACA 58.862 45.455 0.00 0.00 34.94 3.41
2698 2954 3.563808 GGCAACTTGTGTGTATGAGACAA 59.436 43.478 0.00 0.00 40.66 3.18
2705 2961 6.603237 TTGTGTGTATGAGACAAGAGTTTG 57.397 37.500 0.00 0.00 40.66 2.93
2706 2962 5.056480 TGTGTGTATGAGACAAGAGTTTGG 58.944 41.667 0.00 0.00 40.66 3.28
2707 2963 4.452455 GTGTGTATGAGACAAGAGTTTGGG 59.548 45.833 0.00 0.00 40.66 4.12
2708 2964 4.003648 GTGTATGAGACAAGAGTTTGGGG 58.996 47.826 0.00 0.00 40.66 4.96
2709 2965 2.887151 ATGAGACAAGAGTTTGGGGG 57.113 50.000 0.00 0.00 38.66 5.40
2710 2966 1.518367 TGAGACAAGAGTTTGGGGGT 58.482 50.000 0.00 0.00 38.66 4.95
2711 2967 1.420138 TGAGACAAGAGTTTGGGGGTC 59.580 52.381 0.00 0.00 38.66 4.46
2712 2968 1.700186 GAGACAAGAGTTTGGGGGTCT 59.300 52.381 0.00 0.00 38.66 3.85
2713 2969 2.106684 GAGACAAGAGTTTGGGGGTCTT 59.893 50.000 0.00 0.00 38.66 3.01
2715 2971 1.620822 CAAGAGTTTGGGGGTCTTGG 58.379 55.000 3.81 0.00 42.30 3.61
2716 2972 0.482887 AAGAGTTTGGGGGTCTTGGG 59.517 55.000 0.00 0.00 0.00 4.12
2717 2973 0.402861 AGAGTTTGGGGGTCTTGGGA 60.403 55.000 0.00 0.00 0.00 4.37
2718 2974 0.704664 GAGTTTGGGGGTCTTGGGAT 59.295 55.000 0.00 0.00 0.00 3.85
2719 2975 0.704664 AGTTTGGGGGTCTTGGGATC 59.295 55.000 0.00 0.00 0.00 3.36
2720 2976 0.324368 GTTTGGGGGTCTTGGGATCC 60.324 60.000 1.92 1.92 41.89 3.36
2731 2987 3.018901 GGGATCCCCAACCTGCAT 58.981 61.111 21.42 0.00 44.65 3.96
2732 2988 1.456331 GGGATCCCCAACCTGCATG 60.456 63.158 21.42 0.00 44.65 4.06
2733 2989 1.614711 GGATCCCCAACCTGCATGA 59.385 57.895 0.00 0.00 0.00 3.07
2734 2990 0.186873 GGATCCCCAACCTGCATGAT 59.813 55.000 0.00 0.00 0.00 2.45
2735 2991 1.613836 GATCCCCAACCTGCATGATC 58.386 55.000 0.00 0.00 0.00 2.92
2736 2992 1.144503 GATCCCCAACCTGCATGATCT 59.855 52.381 0.00 0.00 0.00 2.75
2737 2993 1.891933 TCCCCAACCTGCATGATCTA 58.108 50.000 0.00 0.00 0.00 1.98
2738 2994 2.204463 TCCCCAACCTGCATGATCTAA 58.796 47.619 0.00 0.00 0.00 2.10
2739 2995 2.580322 TCCCCAACCTGCATGATCTAAA 59.420 45.455 0.00 0.00 0.00 1.85
2740 2996 3.205056 TCCCCAACCTGCATGATCTAAAT 59.795 43.478 0.00 0.00 0.00 1.40
2741 2997 4.415179 TCCCCAACCTGCATGATCTAAATA 59.585 41.667 0.00 0.00 0.00 1.40
2742 2998 5.074929 TCCCCAACCTGCATGATCTAAATAT 59.925 40.000 0.00 0.00 0.00 1.28
2743 2999 5.416952 CCCCAACCTGCATGATCTAAATATC 59.583 44.000 0.00 0.00 0.00 1.63
2744 3000 6.243900 CCCAACCTGCATGATCTAAATATCT 58.756 40.000 0.00 0.00 0.00 1.98
2745 3001 6.150641 CCCAACCTGCATGATCTAAATATCTG 59.849 42.308 0.00 0.00 0.00 2.90
2746 3002 6.713903 CCAACCTGCATGATCTAAATATCTGT 59.286 38.462 0.00 0.00 0.00 3.41
2747 3003 7.230108 CCAACCTGCATGATCTAAATATCTGTT 59.770 37.037 0.00 0.00 0.00 3.16
2748 3004 8.627403 CAACCTGCATGATCTAAATATCTGTTT 58.373 33.333 0.00 0.00 0.00 2.83
2749 3005 9.851686 AACCTGCATGATCTAAATATCTGTTTA 57.148 29.630 0.00 0.00 0.00 2.01
2760 3016 9.976511 TCTAAATATCTGTTTATTAGGGTCGTG 57.023 33.333 0.00 0.00 0.00 4.35
2761 3017 9.204570 CTAAATATCTGTTTATTAGGGTCGTGG 57.795 37.037 0.00 0.00 0.00 4.94
2762 3018 3.899052 TCTGTTTATTAGGGTCGTGGG 57.101 47.619 0.00 0.00 0.00 4.61
2763 3019 3.175594 TCTGTTTATTAGGGTCGTGGGT 58.824 45.455 0.00 0.00 0.00 4.51
2764 3020 3.583966 TCTGTTTATTAGGGTCGTGGGTT 59.416 43.478 0.00 0.00 0.00 4.11
2765 3021 4.776837 TCTGTTTATTAGGGTCGTGGGTTA 59.223 41.667 0.00 0.00 0.00 2.85
2766 3022 5.248020 TCTGTTTATTAGGGTCGTGGGTTAA 59.752 40.000 0.00 0.00 0.00 2.01
2767 3023 5.874093 TGTTTATTAGGGTCGTGGGTTAAA 58.126 37.500 0.00 0.00 0.00 1.52
2768 3024 6.302269 TGTTTATTAGGGTCGTGGGTTAAAA 58.698 36.000 0.00 0.00 0.00 1.52
2769 3025 6.430616 TGTTTATTAGGGTCGTGGGTTAAAAG 59.569 38.462 0.00 0.00 0.00 2.27
2770 3026 4.914177 ATTAGGGTCGTGGGTTAAAAGA 57.086 40.909 0.00 0.00 0.00 2.52
2771 3027 4.914177 TTAGGGTCGTGGGTTAAAAGAT 57.086 40.909 0.00 0.00 0.00 2.40
2772 3028 6.564557 ATTAGGGTCGTGGGTTAAAAGATA 57.435 37.500 0.00 0.00 0.00 1.98
2773 3029 4.212143 AGGGTCGTGGGTTAAAAGATAC 57.788 45.455 0.00 0.00 0.00 2.24
2774 3030 3.583966 AGGGTCGTGGGTTAAAAGATACA 59.416 43.478 0.00 0.00 0.00 2.29
2775 3031 4.226620 AGGGTCGTGGGTTAAAAGATACAT 59.773 41.667 0.00 0.00 0.00 2.29
2776 3032 4.945543 GGGTCGTGGGTTAAAAGATACATT 59.054 41.667 0.00 0.00 0.00 2.71
2777 3033 6.070078 AGGGTCGTGGGTTAAAAGATACATTA 60.070 38.462 0.00 0.00 0.00 1.90
2778 3034 6.598850 GGGTCGTGGGTTAAAAGATACATTAA 59.401 38.462 0.00 0.00 0.00 1.40
2779 3035 7.283807 GGGTCGTGGGTTAAAAGATACATTAAT 59.716 37.037 0.00 0.00 0.00 1.40
2780 3036 8.126700 GGTCGTGGGTTAAAAGATACATTAATG 58.873 37.037 14.01 14.01 0.00 1.90
2781 3037 8.126700 GTCGTGGGTTAAAAGATACATTAATGG 58.873 37.037 19.37 2.26 0.00 3.16
2782 3038 8.047911 TCGTGGGTTAAAAGATACATTAATGGA 58.952 33.333 19.37 11.88 0.00 3.41
2783 3039 8.846211 CGTGGGTTAAAAGATACATTAATGGAT 58.154 33.333 13.22 13.22 32.95 3.41
2797 3053 8.021898 ACATTAATGGATAAGGGAAAACATGG 57.978 34.615 19.37 0.00 29.59 3.66
2798 3054 7.843760 ACATTAATGGATAAGGGAAAACATGGA 59.156 33.333 19.37 0.00 29.59 3.41
2799 3055 7.896383 TTAATGGATAAGGGAAAACATGGAG 57.104 36.000 0.00 0.00 0.00 3.86
2800 3056 4.249638 TGGATAAGGGAAAACATGGAGG 57.750 45.455 0.00 0.00 0.00 4.30
2801 3057 3.855599 TGGATAAGGGAAAACATGGAGGA 59.144 43.478 0.00 0.00 0.00 3.71
2802 3058 4.293634 TGGATAAGGGAAAACATGGAGGAA 59.706 41.667 0.00 0.00 0.00 3.36
2803 3059 5.043432 TGGATAAGGGAAAACATGGAGGAAT 60.043 40.000 0.00 0.00 0.00 3.01
2804 3060 5.899547 GGATAAGGGAAAACATGGAGGAATT 59.100 40.000 0.00 0.00 0.00 2.17
2805 3061 6.384015 GGATAAGGGAAAACATGGAGGAATTT 59.616 38.462 0.00 0.00 0.00 1.82
2806 3062 7.092891 GGATAAGGGAAAACATGGAGGAATTTT 60.093 37.037 0.00 0.00 0.00 1.82
2807 3063 5.488262 AGGGAAAACATGGAGGAATTTTG 57.512 39.130 0.00 0.00 0.00 2.44
2808 3064 4.907269 AGGGAAAACATGGAGGAATTTTGT 59.093 37.500 0.00 0.00 0.00 2.83
2809 3065 6.081356 AGGGAAAACATGGAGGAATTTTGTA 58.919 36.000 0.00 0.00 0.00 2.41
2810 3066 6.211384 AGGGAAAACATGGAGGAATTTTGTAG 59.789 38.462 0.00 0.00 0.00 2.74
2811 3067 6.210584 GGGAAAACATGGAGGAATTTTGTAGA 59.789 38.462 0.00 0.00 0.00 2.59
2812 3068 7.093333 GGGAAAACATGGAGGAATTTTGTAGAT 60.093 37.037 0.00 0.00 0.00 1.98
2813 3069 7.761249 GGAAAACATGGAGGAATTTTGTAGATG 59.239 37.037 0.00 0.00 0.00 2.90
2814 3070 5.841957 ACATGGAGGAATTTTGTAGATGC 57.158 39.130 0.00 0.00 0.00 3.91
2815 3071 4.646492 ACATGGAGGAATTTTGTAGATGCC 59.354 41.667 0.00 0.00 0.00 4.40
2816 3072 4.314522 TGGAGGAATTTTGTAGATGCCA 57.685 40.909 0.00 0.00 0.00 4.92
2817 3073 4.671831 TGGAGGAATTTTGTAGATGCCAA 58.328 39.130 0.00 0.00 0.00 4.52
2818 3074 5.083122 TGGAGGAATTTTGTAGATGCCAAA 58.917 37.500 0.00 0.00 0.00 3.28
2819 3075 5.721000 TGGAGGAATTTTGTAGATGCCAAAT 59.279 36.000 0.00 0.00 32.28 2.32
2820 3076 6.894654 TGGAGGAATTTTGTAGATGCCAAATA 59.105 34.615 0.00 0.00 32.28 1.40
2821 3077 7.564660 TGGAGGAATTTTGTAGATGCCAAATAT 59.435 33.333 0.00 0.00 32.28 1.28
2822 3078 9.077885 GGAGGAATTTTGTAGATGCCAAATATA 57.922 33.333 0.00 0.00 32.28 0.86
2832 3088 9.929180 TGTAGATGCCAAATATATGTCTAACTC 57.071 33.333 0.00 0.00 0.00 3.01
2833 3089 9.372369 GTAGATGCCAAATATATGTCTAACTCC 57.628 37.037 0.00 0.00 0.00 3.85
2834 3090 7.398024 AGATGCCAAATATATGTCTAACTCCC 58.602 38.462 0.00 0.00 0.00 4.30
2835 3091 5.876357 TGCCAAATATATGTCTAACTCCCC 58.124 41.667 0.00 0.00 0.00 4.81
2836 3092 5.371176 TGCCAAATATATGTCTAACTCCCCA 59.629 40.000 0.00 0.00 0.00 4.96
2837 3093 6.126332 TGCCAAATATATGTCTAACTCCCCAA 60.126 38.462 0.00 0.00 0.00 4.12
2838 3094 6.775629 GCCAAATATATGTCTAACTCCCCAAA 59.224 38.462 0.00 0.00 0.00 3.28
2839 3095 7.255486 GCCAAATATATGTCTAACTCCCCAAAC 60.255 40.741 0.00 0.00 0.00 2.93
2840 3096 7.777910 CCAAATATATGTCTAACTCCCCAAACA 59.222 37.037 0.00 0.00 0.00 2.83
2841 3097 9.354673 CAAATATATGTCTAACTCCCCAAACAT 57.645 33.333 0.00 0.00 0.00 2.71
2842 3098 9.936329 AAATATATGTCTAACTCCCCAAACATT 57.064 29.630 0.00 0.00 0.00 2.71
2843 3099 9.936329 AATATATGTCTAACTCCCCAAACATTT 57.064 29.630 0.00 0.00 0.00 2.32
2844 3100 9.936329 ATATATGTCTAACTCCCCAAACATTTT 57.064 29.630 0.00 0.00 0.00 1.82
2845 3101 6.590234 ATGTCTAACTCCCCAAACATTTTC 57.410 37.500 0.00 0.00 0.00 2.29
2846 3102 5.701224 TGTCTAACTCCCCAAACATTTTCT 58.299 37.500 0.00 0.00 0.00 2.52
2847 3103 5.534654 TGTCTAACTCCCCAAACATTTTCTG 59.465 40.000 0.00 0.00 0.00 3.02
2848 3104 5.535030 GTCTAACTCCCCAAACATTTTCTGT 59.465 40.000 0.00 0.00 40.84 3.41
2849 3105 6.713450 GTCTAACTCCCCAAACATTTTCTGTA 59.287 38.462 0.00 0.00 36.98 2.74
2850 3106 6.940298 TCTAACTCCCCAAACATTTTCTGTAG 59.060 38.462 0.00 0.00 36.98 2.74
2851 3107 5.061721 ACTCCCCAAACATTTTCTGTAGT 57.938 39.130 0.00 0.00 36.98 2.73
2852 3108 4.827284 ACTCCCCAAACATTTTCTGTAGTG 59.173 41.667 0.00 0.00 36.98 2.74
2853 3109 5.055265 TCCCCAAACATTTTCTGTAGTGA 57.945 39.130 0.00 0.00 36.98 3.41
2854 3110 5.640147 TCCCCAAACATTTTCTGTAGTGAT 58.360 37.500 0.00 0.00 36.98 3.06
2855 3111 6.074648 TCCCCAAACATTTTCTGTAGTGATT 58.925 36.000 0.00 0.00 36.98 2.57
2856 3112 6.208599 TCCCCAAACATTTTCTGTAGTGATTC 59.791 38.462 0.00 0.00 36.98 2.52
2857 3113 6.209391 CCCCAAACATTTTCTGTAGTGATTCT 59.791 38.462 0.00 0.00 36.98 2.40
2858 3114 7.255942 CCCCAAACATTTTCTGTAGTGATTCTT 60.256 37.037 0.00 0.00 36.98 2.52
2859 3115 8.143835 CCCAAACATTTTCTGTAGTGATTCTTT 58.856 33.333 0.00 0.00 36.98 2.52
2860 3116 9.185192 CCAAACATTTTCTGTAGTGATTCTTTC 57.815 33.333 0.00 0.00 36.98 2.62
2861 3117 8.895845 CAAACATTTTCTGTAGTGATTCTTTCG 58.104 33.333 0.00 0.00 36.98 3.46
2862 3118 7.133891 ACATTTTCTGTAGTGATTCTTTCGG 57.866 36.000 0.00 0.00 35.91 4.30
2863 3119 6.149474 ACATTTTCTGTAGTGATTCTTTCGGG 59.851 38.462 0.00 0.00 35.91 5.14
2864 3120 3.247006 TCTGTAGTGATTCTTTCGGGC 57.753 47.619 0.00 0.00 0.00 6.13
2865 3121 2.093658 TCTGTAGTGATTCTTTCGGGCC 60.094 50.000 0.00 0.00 0.00 5.80
2866 3122 1.906574 TGTAGTGATTCTTTCGGGCCT 59.093 47.619 0.84 0.00 0.00 5.19
2867 3123 2.093658 TGTAGTGATTCTTTCGGGCCTC 60.094 50.000 0.84 0.00 0.00 4.70
2868 3124 1.280457 AGTGATTCTTTCGGGCCTCT 58.720 50.000 0.84 0.00 0.00 3.69
2869 3125 2.467880 AGTGATTCTTTCGGGCCTCTA 58.532 47.619 0.84 0.00 0.00 2.43
2870 3126 2.838202 AGTGATTCTTTCGGGCCTCTAA 59.162 45.455 0.84 0.00 0.00 2.10
2871 3127 2.937149 GTGATTCTTTCGGGCCTCTAAC 59.063 50.000 0.84 0.00 0.00 2.34
2872 3128 2.838202 TGATTCTTTCGGGCCTCTAACT 59.162 45.455 0.84 0.00 0.00 2.24
2873 3129 3.263425 TGATTCTTTCGGGCCTCTAACTT 59.737 43.478 0.84 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
270 309 1.293498 CGCAACCACCAGAGCTAGT 59.707 57.895 0.00 0.00 0.00 2.57
547 587 9.866507 AATATCTTTCCCTAATCTCTCCCTAAT 57.133 33.333 0.00 0.00 0.00 1.73
548 588 9.327731 GAATATCTTTCCCTAATCTCTCCCTAA 57.672 37.037 0.00 0.00 0.00 2.69
549 589 8.465146 TGAATATCTTTCCCTAATCTCTCCCTA 58.535 37.037 0.00 0.00 0.00 3.53
550 590 7.316841 TGAATATCTTTCCCTAATCTCTCCCT 58.683 38.462 0.00 0.00 0.00 4.20
551 591 7.560796 TGAATATCTTTCCCTAATCTCTCCC 57.439 40.000 0.00 0.00 0.00 4.30
552 592 8.655901 AGTTGAATATCTTTCCCTAATCTCTCC 58.344 37.037 0.00 0.00 0.00 3.71
555 595 9.936759 CCTAGTTGAATATCTTTCCCTAATCTC 57.063 37.037 0.00 0.00 0.00 2.75
556 596 8.379331 GCCTAGTTGAATATCTTTCCCTAATCT 58.621 37.037 0.00 0.00 0.00 2.40
557 597 8.157476 TGCCTAGTTGAATATCTTTCCCTAATC 58.843 37.037 0.00 0.00 0.00 1.75
558 598 8.045720 TGCCTAGTTGAATATCTTTCCCTAAT 57.954 34.615 0.00 0.00 0.00 1.73
559 599 7.446106 TGCCTAGTTGAATATCTTTCCCTAA 57.554 36.000 0.00 0.00 0.00 2.69
560 600 7.453393 CATGCCTAGTTGAATATCTTTCCCTA 58.547 38.462 0.00 0.00 0.00 3.53
561 601 5.975988 TGCCTAGTTGAATATCTTTCCCT 57.024 39.130 0.00 0.00 0.00 4.20
562 602 5.048434 GCATGCCTAGTTGAATATCTTTCCC 60.048 44.000 6.36 0.00 0.00 3.97
563 603 5.334414 CGCATGCCTAGTTGAATATCTTTCC 60.334 44.000 13.15 0.00 0.00 3.13
564 604 5.237344 ACGCATGCCTAGTTGAATATCTTTC 59.763 40.000 13.15 0.00 0.00 2.62
565 605 5.126067 ACGCATGCCTAGTTGAATATCTTT 58.874 37.500 13.15 0.00 0.00 2.52
566 606 4.708177 ACGCATGCCTAGTTGAATATCTT 58.292 39.130 13.15 0.00 0.00 2.40
567 607 4.342862 ACGCATGCCTAGTTGAATATCT 57.657 40.909 13.15 0.00 0.00 1.98
568 608 5.389935 GCTAACGCATGCCTAGTTGAATATC 60.390 44.000 13.15 0.00 35.78 1.63
569 609 4.452455 GCTAACGCATGCCTAGTTGAATAT 59.548 41.667 13.15 0.00 35.78 1.28
570 610 3.807622 GCTAACGCATGCCTAGTTGAATA 59.192 43.478 13.15 0.00 35.78 1.75
580 620 0.657840 CCAAGTAGCTAACGCATGCC 59.342 55.000 13.15 0.00 39.10 4.40
590 630 2.711547 ACCTTCCAAGTTCCAAGTAGCT 59.288 45.455 0.00 0.00 0.00 3.32
658 698 1.202545 GGAAAGTCGGTCCCTATCAGC 60.203 57.143 0.00 0.00 0.00 4.26
671 711 1.671379 GCCCGACAGGTGGAAAGTC 60.671 63.158 0.00 0.00 38.26 3.01
681 721 3.266636 TGTTGTTGTATATGCCCGACAG 58.733 45.455 0.00 0.00 0.00 3.51
682 722 3.266636 CTGTTGTTGTATATGCCCGACA 58.733 45.455 0.00 0.00 0.00 4.35
683 723 2.031683 GCTGTTGTTGTATATGCCCGAC 59.968 50.000 0.00 0.00 0.00 4.79
735 775 1.474879 CATTGCATCATGGCTGACACA 59.525 47.619 0.00 0.00 33.22 3.72
753 793 1.133853 GGAGATCCTGCTGCTTTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
754 794 0.254178 GGAGATCCTGCTGCTTTCCA 59.746 55.000 0.00 0.00 0.00 3.53
755 795 0.545646 AGGAGATCCTGCTGCTTTCC 59.454 55.000 0.00 0.00 46.55 3.13
785 829 1.961378 TGCAAGAAGGCAGCACATG 59.039 52.632 0.00 0.00 39.25 3.21
805 849 0.323957 AGGCACCGGTACTTTTCTCC 59.676 55.000 6.87 0.00 0.00 3.71
806 850 1.270678 ACAGGCACCGGTACTTTTCTC 60.271 52.381 6.87 0.00 0.00 2.87
808 852 1.154197 GACAGGCACCGGTACTTTTC 58.846 55.000 6.87 0.00 0.00 2.29
811 855 0.690762 ATTGACAGGCACCGGTACTT 59.309 50.000 6.87 0.00 0.00 2.24
812 856 0.036388 CATTGACAGGCACCGGTACT 60.036 55.000 6.87 5.85 0.00 2.73
813 857 0.036765 TCATTGACAGGCACCGGTAC 60.037 55.000 6.87 0.00 0.00 3.34
814 858 0.687920 TTCATTGACAGGCACCGGTA 59.312 50.000 6.87 0.00 0.00 4.02
819 903 5.207768 CGCTTAATATTCATTGACAGGCAC 58.792 41.667 0.00 0.00 0.00 5.01
823 907 9.035607 AGTCTAACGCTTAATATTCATTGACAG 57.964 33.333 0.00 0.00 0.00 3.51
826 910 7.441157 CCCAGTCTAACGCTTAATATTCATTGA 59.559 37.037 0.00 0.00 0.00 2.57
830 914 6.229936 ACCCAGTCTAACGCTTAATATTCA 57.770 37.500 0.00 0.00 0.00 2.57
926 1011 0.548031 AGGGTTCGATGGCATCATGT 59.452 50.000 25.88 2.49 32.98 3.21
966 1051 7.148239 GCACACAACTGGGATTTATATATAGGC 60.148 40.741 0.00 0.00 0.00 3.93
994 1084 1.444933 TTGGGTCCAACTCTGGTCAT 58.555 50.000 0.00 0.00 43.97 3.06
1479 1593 6.490241 TCATTCAGGTCATCACATACTCAT 57.510 37.500 0.00 0.00 0.00 2.90
1480 1594 5.937975 TCATTCAGGTCATCACATACTCA 57.062 39.130 0.00 0.00 0.00 3.41
1481 1595 7.798596 ATTTCATTCAGGTCATCACATACTC 57.201 36.000 0.00 0.00 0.00 2.59
1483 1597 8.562892 CCTAATTTCATTCAGGTCATCACATAC 58.437 37.037 0.00 0.00 0.00 2.39
1484 1598 8.274322 ACCTAATTTCATTCAGGTCATCACATA 58.726 33.333 0.00 0.00 36.69 2.29
1535 1651 3.077556 TCCTCGCCCTTGCTCTCC 61.078 66.667 0.00 0.00 34.43 3.71
1609 1737 1.508632 TTCGTCGCCAGAAAAGAAGG 58.491 50.000 0.00 0.00 0.00 3.46
1701 1829 1.961277 GGCACTCCACGTCAAGGTG 60.961 63.158 0.00 0.00 37.66 4.00
1834 1962 2.735762 GCTAGCTACTGAAGTCGGGTTG 60.736 54.545 7.70 0.00 0.00 3.77
2057 2304 1.002011 GGGTCTCCTTGCCTGAACC 60.002 63.158 0.00 0.00 0.00 3.62
2059 2306 1.151810 AGGGGTCTCCTTGCCTGAA 60.152 57.895 0.00 0.00 45.47 3.02
2060 2307 2.538760 AGGGGTCTCCTTGCCTGA 59.461 61.111 0.00 0.00 45.47 3.86
2105 2354 6.647212 TTAAGCATTCTAGTCAACACATCG 57.353 37.500 0.00 0.00 0.00 3.84
2139 2388 3.146847 GACCTTCGACCAATCCAAAACT 58.853 45.455 0.00 0.00 0.00 2.66
2154 2403 5.807011 GCAAAACATTATGACATGGACCTTC 59.193 40.000 0.00 0.00 0.00 3.46
2302 2551 5.929697 TGAGCTCACTTTTGTCATAGTTG 57.070 39.130 13.74 0.00 0.00 3.16
2348 2597 8.910351 AAAACATTAGAAAGCTCTACAGTTCT 57.090 30.769 1.94 1.94 33.47 3.01
2437 2689 6.388619 AAAGGCTGTAAATCTTCCCTAGAA 57.611 37.500 0.00 0.00 36.22 2.10
2504 2760 4.584638 TCCTGCCCTTATAAGAAAGCAA 57.415 40.909 14.28 3.80 0.00 3.91
2510 2766 9.881773 AATTAAAATGATCCTGCCCTTATAAGA 57.118 29.630 14.28 0.00 0.00 2.10
2517 2773 7.016563 GGGATTTAATTAAAATGATCCTGCCCT 59.983 37.037 20.17 1.45 37.93 5.19
2518 2774 7.161404 GGGATTTAATTAAAATGATCCTGCCC 58.839 38.462 20.17 13.33 37.93 5.36
2519 2775 7.734942 TGGGATTTAATTAAAATGATCCTGCC 58.265 34.615 20.17 14.59 37.93 4.85
2520 2776 9.783081 AATGGGATTTAATTAAAATGATCCTGC 57.217 29.630 20.17 10.60 37.93 4.85
2529 2785 9.950496 TGCTTGCTAAATGGGATTTAATTAAAA 57.050 25.926 14.35 0.00 34.59 1.52
2531 2787 9.762933 GATGCTTGCTAAATGGGATTTAATTAA 57.237 29.630 0.00 0.00 34.59 1.40
2532 2788 8.367156 GGATGCTTGCTAAATGGGATTTAATTA 58.633 33.333 0.00 0.00 34.59 1.40
2533 2789 7.219322 GGATGCTTGCTAAATGGGATTTAATT 58.781 34.615 0.00 0.00 34.59 1.40
2534 2790 6.239686 GGGATGCTTGCTAAATGGGATTTAAT 60.240 38.462 0.00 0.00 34.59 1.40
2535 2791 5.070313 GGGATGCTTGCTAAATGGGATTTAA 59.930 40.000 0.00 0.00 34.59 1.52
2536 2792 4.588528 GGGATGCTTGCTAAATGGGATTTA 59.411 41.667 0.00 0.00 33.82 1.40
2537 2793 3.389002 GGGATGCTTGCTAAATGGGATTT 59.611 43.478 0.00 0.00 36.29 2.17
2538 2794 2.967887 GGGATGCTTGCTAAATGGGATT 59.032 45.455 0.00 0.00 0.00 3.01
2539 2795 2.601905 GGGATGCTTGCTAAATGGGAT 58.398 47.619 0.00 0.00 0.00 3.85
2540 2796 1.411501 GGGGATGCTTGCTAAATGGGA 60.412 52.381 0.00 0.00 0.00 4.37
2541 2797 1.043022 GGGGATGCTTGCTAAATGGG 58.957 55.000 0.00 0.00 0.00 4.00
2542 2798 1.779221 TGGGGATGCTTGCTAAATGG 58.221 50.000 0.00 0.00 0.00 3.16
2543 2799 3.228453 AGATGGGGATGCTTGCTAAATG 58.772 45.455 0.00 0.00 0.00 2.32
2544 2800 3.607490 AGATGGGGATGCTTGCTAAAT 57.393 42.857 0.00 0.00 0.00 1.40
2545 2801 3.459598 AGTAGATGGGGATGCTTGCTAAA 59.540 43.478 0.00 0.00 0.00 1.85
2546 2802 3.048600 AGTAGATGGGGATGCTTGCTAA 58.951 45.455 0.00 0.00 0.00 3.09
2547 2803 2.694397 AGTAGATGGGGATGCTTGCTA 58.306 47.619 0.00 0.00 0.00 3.49
2548 2804 1.516110 AGTAGATGGGGATGCTTGCT 58.484 50.000 0.00 0.00 0.00 3.91
2549 2805 1.952296 CAAGTAGATGGGGATGCTTGC 59.048 52.381 0.00 0.00 0.00 4.01
2550 2806 3.565764 TCAAGTAGATGGGGATGCTTG 57.434 47.619 0.00 0.00 35.86 4.01
2551 2807 3.979347 AGATCAAGTAGATGGGGATGCTT 59.021 43.478 0.00 0.00 37.00 3.91
2552 2808 3.582208 GAGATCAAGTAGATGGGGATGCT 59.418 47.826 0.00 0.00 37.00 3.79
2553 2809 3.307339 GGAGATCAAGTAGATGGGGATGC 60.307 52.174 0.00 0.00 37.00 3.91
2554 2810 4.166539 AGGAGATCAAGTAGATGGGGATG 58.833 47.826 0.00 0.00 37.00 3.51
2555 2811 4.500389 AGGAGATCAAGTAGATGGGGAT 57.500 45.455 0.00 0.00 37.00 3.85
2556 2812 4.286813 AAGGAGATCAAGTAGATGGGGA 57.713 45.455 0.00 0.00 37.00 4.81
2557 2813 5.379706 AAAAGGAGATCAAGTAGATGGGG 57.620 43.478 0.00 0.00 37.00 4.96
2558 2814 6.418101 TGAAAAAGGAGATCAAGTAGATGGG 58.582 40.000 0.00 0.00 37.00 4.00
2559 2815 7.928307 TTGAAAAAGGAGATCAAGTAGATGG 57.072 36.000 0.00 0.00 37.00 3.51
2567 2823 4.832823 GGGGAACTTGAAAAAGGAGATCAA 59.167 41.667 0.00 0.00 0.00 2.57
2568 2824 4.141041 TGGGGAACTTGAAAAAGGAGATCA 60.141 41.667 0.00 0.00 0.00 2.92
2569 2825 4.407365 TGGGGAACTTGAAAAAGGAGATC 58.593 43.478 0.00 0.00 0.00 2.75
2570 2826 4.469469 TGGGGAACTTGAAAAAGGAGAT 57.531 40.909 0.00 0.00 0.00 2.75
2571 2827 3.963476 TGGGGAACTTGAAAAAGGAGA 57.037 42.857 0.00 0.00 0.00 3.71
2572 2828 3.960755 ACTTGGGGAACTTGAAAAAGGAG 59.039 43.478 0.00 0.00 0.00 3.69
2573 2829 3.704061 CACTTGGGGAACTTGAAAAAGGA 59.296 43.478 0.00 0.00 0.00 3.36
2574 2830 3.181466 CCACTTGGGGAACTTGAAAAAGG 60.181 47.826 0.00 0.00 0.00 3.11
2575 2831 4.058721 CCACTTGGGGAACTTGAAAAAG 57.941 45.455 0.00 0.00 0.00 2.27
2589 2845 2.514458 AAGGTCAATAGCCCACTTGG 57.486 50.000 0.00 0.00 37.09 3.61
2590 2846 4.222124 ACTAAGGTCAATAGCCCACTTG 57.778 45.455 0.00 0.00 0.00 3.16
2591 2847 6.576778 ATTACTAAGGTCAATAGCCCACTT 57.423 37.500 0.00 0.00 0.00 3.16
2592 2848 6.387220 AGAATTACTAAGGTCAATAGCCCACT 59.613 38.462 0.00 0.00 0.00 4.00
2593 2849 6.592870 AGAATTACTAAGGTCAATAGCCCAC 58.407 40.000 0.00 0.00 0.00 4.61
2594 2850 6.385759 TGAGAATTACTAAGGTCAATAGCCCA 59.614 38.462 0.00 0.00 0.00 5.36
2595 2851 6.827727 TGAGAATTACTAAGGTCAATAGCCC 58.172 40.000 0.00 0.00 0.00 5.19
2596 2852 8.732746 TTTGAGAATTACTAAGGTCAATAGCC 57.267 34.615 0.00 0.00 0.00 3.93
2600 2856 9.965902 AGTCATTTGAGAATTACTAAGGTCAAT 57.034 29.630 0.00 0.00 30.03 2.57
2607 2863 9.944376 AGCAGTTAGTCATTTGAGAATTACTAA 57.056 29.630 0.00 0.00 38.59 2.24
2608 2864 9.944376 AAGCAGTTAGTCATTTGAGAATTACTA 57.056 29.630 0.00 0.00 33.14 1.82
2609 2865 8.725148 CAAGCAGTTAGTCATTTGAGAATTACT 58.275 33.333 0.00 0.00 34.81 2.24
2610 2866 8.507249 ACAAGCAGTTAGTCATTTGAGAATTAC 58.493 33.333 0.00 0.00 0.00 1.89
2611 2867 8.506437 CACAAGCAGTTAGTCATTTGAGAATTA 58.494 33.333 0.00 0.00 0.00 1.40
2612 2868 7.365741 CACAAGCAGTTAGTCATTTGAGAATT 58.634 34.615 0.00 0.00 0.00 2.17
2613 2869 6.072286 CCACAAGCAGTTAGTCATTTGAGAAT 60.072 38.462 0.00 0.00 0.00 2.40
2614 2870 5.239306 CCACAAGCAGTTAGTCATTTGAGAA 59.761 40.000 0.00 0.00 0.00 2.87
2615 2871 4.756642 CCACAAGCAGTTAGTCATTTGAGA 59.243 41.667 0.00 0.00 0.00 3.27
2616 2872 4.756642 TCCACAAGCAGTTAGTCATTTGAG 59.243 41.667 0.00 0.00 0.00 3.02
2617 2873 4.713553 TCCACAAGCAGTTAGTCATTTGA 58.286 39.130 0.00 0.00 0.00 2.69
2618 2874 5.437289 TTCCACAAGCAGTTAGTCATTTG 57.563 39.130 0.00 0.00 0.00 2.32
2619 2875 5.769662 TCATTCCACAAGCAGTTAGTCATTT 59.230 36.000 0.00 0.00 0.00 2.32
2620 2876 5.182001 GTCATTCCACAAGCAGTTAGTCATT 59.818 40.000 0.00 0.00 0.00 2.57
2621 2877 4.697352 GTCATTCCACAAGCAGTTAGTCAT 59.303 41.667 0.00 0.00 0.00 3.06
2622 2878 4.065088 GTCATTCCACAAGCAGTTAGTCA 58.935 43.478 0.00 0.00 0.00 3.41
2623 2879 4.319177 AGTCATTCCACAAGCAGTTAGTC 58.681 43.478 0.00 0.00 0.00 2.59
2624 2880 4.357918 AGTCATTCCACAAGCAGTTAGT 57.642 40.909 0.00 0.00 0.00 2.24
2625 2881 4.083110 CCAAGTCATTCCACAAGCAGTTAG 60.083 45.833 0.00 0.00 0.00 2.34
2626 2882 3.820467 CCAAGTCATTCCACAAGCAGTTA 59.180 43.478 0.00 0.00 0.00 2.24
2627 2883 2.624838 CCAAGTCATTCCACAAGCAGTT 59.375 45.455 0.00 0.00 0.00 3.16
2628 2884 2.233271 CCAAGTCATTCCACAAGCAGT 58.767 47.619 0.00 0.00 0.00 4.40
2629 2885 1.542915 CCCAAGTCATTCCACAAGCAG 59.457 52.381 0.00 0.00 0.00 4.24
2630 2886 1.619654 CCCAAGTCATTCCACAAGCA 58.380 50.000 0.00 0.00 0.00 3.91
2631 2887 0.890683 CCCCAAGTCATTCCACAAGC 59.109 55.000 0.00 0.00 0.00 4.01
2632 2888 0.890683 GCCCCAAGTCATTCCACAAG 59.109 55.000 0.00 0.00 0.00 3.16
2633 2889 0.187117 TGCCCCAAGTCATTCCACAA 59.813 50.000 0.00 0.00 0.00 3.33
2634 2890 0.539438 GTGCCCCAAGTCATTCCACA 60.539 55.000 0.00 0.00 0.00 4.17
2635 2891 0.539438 TGTGCCCCAAGTCATTCCAC 60.539 55.000 0.00 0.00 0.00 4.02
2636 2892 0.251297 CTGTGCCCCAAGTCATTCCA 60.251 55.000 0.00 0.00 0.00 3.53
2637 2893 0.967380 CCTGTGCCCCAAGTCATTCC 60.967 60.000 0.00 0.00 0.00 3.01
2638 2894 0.038166 TCCTGTGCCCCAAGTCATTC 59.962 55.000 0.00 0.00 0.00 2.67
2639 2895 0.482446 TTCCTGTGCCCCAAGTCATT 59.518 50.000 0.00 0.00 0.00 2.57
2640 2896 0.482446 TTTCCTGTGCCCCAAGTCAT 59.518 50.000 0.00 0.00 0.00 3.06
2641 2897 0.260230 TTTTCCTGTGCCCCAAGTCA 59.740 50.000 0.00 0.00 0.00 3.41
2642 2898 1.632589 ATTTTCCTGTGCCCCAAGTC 58.367 50.000 0.00 0.00 0.00 3.01
2643 2899 1.970640 GAATTTTCCTGTGCCCCAAGT 59.029 47.619 0.00 0.00 0.00 3.16
2644 2900 1.969923 TGAATTTTCCTGTGCCCCAAG 59.030 47.619 0.00 0.00 0.00 3.61
2645 2901 2.094100 TGAATTTTCCTGTGCCCCAA 57.906 45.000 0.00 0.00 0.00 4.12
2646 2902 2.178580 GATGAATTTTCCTGTGCCCCA 58.821 47.619 0.00 0.00 0.00 4.96
2647 2903 2.460669 AGATGAATTTTCCTGTGCCCC 58.539 47.619 0.00 0.00 0.00 5.80
2648 2904 3.067320 GCTAGATGAATTTTCCTGTGCCC 59.933 47.826 0.00 0.00 0.00 5.36
2649 2905 3.950395 AGCTAGATGAATTTTCCTGTGCC 59.050 43.478 0.00 0.00 0.00 5.01
2650 2906 6.317391 AGTTAGCTAGATGAATTTTCCTGTGC 59.683 38.462 0.00 0.00 0.00 4.57
2651 2907 7.201679 CCAGTTAGCTAGATGAATTTTCCTGTG 60.202 40.741 8.44 0.00 0.00 3.66
2652 2908 6.825721 CCAGTTAGCTAGATGAATTTTCCTGT 59.174 38.462 8.44 0.00 0.00 4.00
2653 2909 6.238593 GCCAGTTAGCTAGATGAATTTTCCTG 60.239 42.308 8.44 0.00 0.00 3.86
2654 2910 5.825151 GCCAGTTAGCTAGATGAATTTTCCT 59.175 40.000 8.44 0.00 0.00 3.36
2655 2911 5.590259 TGCCAGTTAGCTAGATGAATTTTCC 59.410 40.000 8.44 0.00 0.00 3.13
2656 2912 6.683974 TGCCAGTTAGCTAGATGAATTTTC 57.316 37.500 8.44 0.00 0.00 2.29
2657 2913 6.660949 AGTTGCCAGTTAGCTAGATGAATTTT 59.339 34.615 8.44 0.00 0.00 1.82
2658 2914 6.183347 AGTTGCCAGTTAGCTAGATGAATTT 58.817 36.000 8.44 0.00 0.00 1.82
2659 2915 5.749462 AGTTGCCAGTTAGCTAGATGAATT 58.251 37.500 8.44 0.00 0.00 2.17
2660 2916 5.365021 AGTTGCCAGTTAGCTAGATGAAT 57.635 39.130 8.44 0.00 0.00 2.57
2661 2917 4.826274 AGTTGCCAGTTAGCTAGATGAA 57.174 40.909 8.44 0.00 0.00 2.57
2662 2918 4.020218 ACAAGTTGCCAGTTAGCTAGATGA 60.020 41.667 1.81 0.00 0.00 2.92
2663 2919 4.093998 CACAAGTTGCCAGTTAGCTAGATG 59.906 45.833 1.81 0.00 0.00 2.90
2664 2920 4.256920 CACAAGTTGCCAGTTAGCTAGAT 58.743 43.478 1.81 0.00 0.00 1.98
2665 2921 3.071023 ACACAAGTTGCCAGTTAGCTAGA 59.929 43.478 1.81 0.00 0.00 2.43
2666 2922 3.187227 CACACAAGTTGCCAGTTAGCTAG 59.813 47.826 1.81 0.00 0.00 3.42
2667 2923 3.138304 CACACAAGTTGCCAGTTAGCTA 58.862 45.455 1.81 0.00 0.00 3.32
2668 2924 1.949525 CACACAAGTTGCCAGTTAGCT 59.050 47.619 1.81 0.00 0.00 3.32
2669 2925 1.676006 ACACACAAGTTGCCAGTTAGC 59.324 47.619 1.81 0.00 0.00 3.09
2670 2926 4.754618 TCATACACACAAGTTGCCAGTTAG 59.245 41.667 1.81 0.00 0.00 2.34
2671 2927 4.709250 TCATACACACAAGTTGCCAGTTA 58.291 39.130 1.81 0.00 0.00 2.24
2672 2928 3.550820 TCATACACACAAGTTGCCAGTT 58.449 40.909 1.81 0.00 0.00 3.16
2673 2929 3.141398 CTCATACACACAAGTTGCCAGT 58.859 45.455 1.81 1.43 0.00 4.00
2674 2930 3.187227 GTCTCATACACACAAGTTGCCAG 59.813 47.826 1.81 0.00 0.00 4.85
2675 2931 3.138304 GTCTCATACACACAAGTTGCCA 58.862 45.455 1.81 0.00 0.00 4.92
2676 2932 3.138304 TGTCTCATACACACAAGTTGCC 58.862 45.455 1.81 0.00 31.43 4.52
2677 2933 4.511454 TCTTGTCTCATACACACAAGTTGC 59.489 41.667 1.81 0.00 44.91 4.17
2678 2934 5.755375 ACTCTTGTCTCATACACACAAGTTG 59.245 40.000 0.00 0.00 44.91 3.16
2679 2935 5.918608 ACTCTTGTCTCATACACACAAGTT 58.081 37.500 10.08 0.00 44.91 2.66
2680 2936 5.537300 ACTCTTGTCTCATACACACAAGT 57.463 39.130 10.08 0.00 44.91 3.16
2681 2937 6.293081 CCAAACTCTTGTCTCATACACACAAG 60.293 42.308 4.93 4.93 45.66 3.16
2682 2938 5.527214 CCAAACTCTTGTCTCATACACACAA 59.473 40.000 0.00 0.00 38.00 3.33
2683 2939 5.056480 CCAAACTCTTGTCTCATACACACA 58.944 41.667 0.00 0.00 38.00 3.72
2684 2940 4.452455 CCCAAACTCTTGTCTCATACACAC 59.548 45.833 0.00 0.00 38.00 3.82
2685 2941 4.504864 CCCCAAACTCTTGTCTCATACACA 60.505 45.833 0.00 0.00 38.00 3.72
2686 2942 4.003648 CCCCAAACTCTTGTCTCATACAC 58.996 47.826 0.00 0.00 38.00 2.90
2687 2943 3.009033 CCCCCAAACTCTTGTCTCATACA 59.991 47.826 0.00 0.00 35.88 2.29
2688 2944 3.009143 ACCCCCAAACTCTTGTCTCATAC 59.991 47.826 0.00 0.00 0.00 2.39
2689 2945 3.256704 ACCCCCAAACTCTTGTCTCATA 58.743 45.455 0.00 0.00 0.00 2.15
2690 2946 2.040412 GACCCCCAAACTCTTGTCTCAT 59.960 50.000 0.00 0.00 0.00 2.90
2691 2947 1.420138 GACCCCCAAACTCTTGTCTCA 59.580 52.381 0.00 0.00 0.00 3.27
2692 2948 1.700186 AGACCCCCAAACTCTTGTCTC 59.300 52.381 0.00 0.00 0.00 3.36
2693 2949 1.821088 AGACCCCCAAACTCTTGTCT 58.179 50.000 0.00 0.00 0.00 3.41
2694 2950 2.230660 CAAGACCCCCAAACTCTTGTC 58.769 52.381 0.00 0.00 37.29 3.18
2695 2951 1.133482 CCAAGACCCCCAAACTCTTGT 60.133 52.381 6.03 0.00 39.45 3.16
2696 2952 1.620822 CCAAGACCCCCAAACTCTTG 58.379 55.000 0.00 0.00 40.37 3.02
2697 2953 0.482887 CCCAAGACCCCCAAACTCTT 59.517 55.000 0.00 0.00 0.00 2.85
2698 2954 0.402861 TCCCAAGACCCCCAAACTCT 60.403 55.000 0.00 0.00 0.00 3.24
2699 2955 0.704664 ATCCCAAGACCCCCAAACTC 59.295 55.000 0.00 0.00 0.00 3.01
2700 2956 0.704664 GATCCCAAGACCCCCAAACT 59.295 55.000 0.00 0.00 0.00 2.66
2701 2957 0.324368 GGATCCCAAGACCCCCAAAC 60.324 60.000 0.00 0.00 0.00 2.93
2702 2958 1.514864 GGGATCCCAAGACCCCCAAA 61.515 60.000 26.95 0.00 37.88 3.28
2703 2959 1.933812 GGGATCCCAAGACCCCCAA 60.934 63.158 26.95 0.00 37.88 4.12
2704 2960 2.286885 GGGATCCCAAGACCCCCA 60.287 66.667 26.95 0.00 37.88 4.96
2714 2970 1.456331 CATGCAGGTTGGGGATCCC 60.456 63.158 23.95 23.95 45.71 3.85
2715 2971 0.186873 ATCATGCAGGTTGGGGATCC 59.813 55.000 1.92 1.92 0.00 3.36
2716 2972 1.144503 AGATCATGCAGGTTGGGGATC 59.855 52.381 0.00 0.00 33.18 3.36
2717 2973 1.229131 AGATCATGCAGGTTGGGGAT 58.771 50.000 0.00 0.00 0.00 3.85
2718 2974 1.891933 TAGATCATGCAGGTTGGGGA 58.108 50.000 0.00 0.00 0.00 4.81
2719 2975 2.734755 TTAGATCATGCAGGTTGGGG 57.265 50.000 0.00 0.00 0.00 4.96
2720 2976 6.150641 CAGATATTTAGATCATGCAGGTTGGG 59.849 42.308 0.00 0.00 0.00 4.12
2721 2977 6.713903 ACAGATATTTAGATCATGCAGGTTGG 59.286 38.462 0.00 0.00 0.00 3.77
2722 2978 7.741027 ACAGATATTTAGATCATGCAGGTTG 57.259 36.000 0.00 0.00 0.00 3.77
2723 2979 8.757982 AAACAGATATTTAGATCATGCAGGTT 57.242 30.769 0.00 0.00 0.00 3.50
2734 2990 9.976511 CACGACCCTAATAAACAGATATTTAGA 57.023 33.333 0.00 0.00 0.00 2.10
2735 2991 9.204570 CCACGACCCTAATAAACAGATATTTAG 57.795 37.037 0.00 0.00 0.00 1.85
2736 2992 8.152246 CCCACGACCCTAATAAACAGATATTTA 58.848 37.037 0.00 0.00 0.00 1.40
2737 2993 6.996282 CCCACGACCCTAATAAACAGATATTT 59.004 38.462 0.00 0.00 0.00 1.40
2738 2994 6.100714 ACCCACGACCCTAATAAACAGATATT 59.899 38.462 0.00 0.00 0.00 1.28
2739 2995 5.605488 ACCCACGACCCTAATAAACAGATAT 59.395 40.000 0.00 0.00 0.00 1.63
2740 2996 4.964262 ACCCACGACCCTAATAAACAGATA 59.036 41.667 0.00 0.00 0.00 1.98
2741 2997 3.778629 ACCCACGACCCTAATAAACAGAT 59.221 43.478 0.00 0.00 0.00 2.90
2742 2998 3.175594 ACCCACGACCCTAATAAACAGA 58.824 45.455 0.00 0.00 0.00 3.41
2743 2999 3.622166 ACCCACGACCCTAATAAACAG 57.378 47.619 0.00 0.00 0.00 3.16
2744 3000 5.495926 TTAACCCACGACCCTAATAAACA 57.504 39.130 0.00 0.00 0.00 2.83
2745 3001 6.654582 TCTTTTAACCCACGACCCTAATAAAC 59.345 38.462 0.00 0.00 0.00 2.01
2746 3002 6.777782 TCTTTTAACCCACGACCCTAATAAA 58.222 36.000 0.00 0.00 0.00 1.40
2747 3003 6.371595 TCTTTTAACCCACGACCCTAATAA 57.628 37.500 0.00 0.00 0.00 1.40
2748 3004 6.564557 ATCTTTTAACCCACGACCCTAATA 57.435 37.500 0.00 0.00 0.00 0.98
2749 3005 4.914177 TCTTTTAACCCACGACCCTAAT 57.086 40.909 0.00 0.00 0.00 1.73
2750 3006 4.914177 ATCTTTTAACCCACGACCCTAA 57.086 40.909 0.00 0.00 0.00 2.69
2751 3007 4.776837 TGTATCTTTTAACCCACGACCCTA 59.223 41.667 0.00 0.00 0.00 3.53
2752 3008 3.583966 TGTATCTTTTAACCCACGACCCT 59.416 43.478 0.00 0.00 0.00 4.34
2753 3009 3.941573 TGTATCTTTTAACCCACGACCC 58.058 45.455 0.00 0.00 0.00 4.46
2754 3010 7.614124 TTAATGTATCTTTTAACCCACGACC 57.386 36.000 0.00 0.00 0.00 4.79
2755 3011 8.126700 CCATTAATGTATCTTTTAACCCACGAC 58.873 37.037 14.25 0.00 0.00 4.34
2756 3012 8.047911 TCCATTAATGTATCTTTTAACCCACGA 58.952 33.333 14.25 0.00 0.00 4.35
2757 3013 8.215926 TCCATTAATGTATCTTTTAACCCACG 57.784 34.615 14.25 0.00 0.00 4.94
2771 3027 9.142014 CCATGTTTTCCCTTATCCATTAATGTA 57.858 33.333 14.25 0.00 0.00 2.29
2772 3028 7.843760 TCCATGTTTTCCCTTATCCATTAATGT 59.156 33.333 14.25 0.00 0.00 2.71
2773 3029 8.248904 TCCATGTTTTCCCTTATCCATTAATG 57.751 34.615 8.58 8.58 0.00 1.90
2774 3030 7.510343 CCTCCATGTTTTCCCTTATCCATTAAT 59.490 37.037 0.00 0.00 0.00 1.40
2775 3031 6.838612 CCTCCATGTTTTCCCTTATCCATTAA 59.161 38.462 0.00 0.00 0.00 1.40
2776 3032 6.161348 TCCTCCATGTTTTCCCTTATCCATTA 59.839 38.462 0.00 0.00 0.00 1.90
2777 3033 5.043432 TCCTCCATGTTTTCCCTTATCCATT 60.043 40.000 0.00 0.00 0.00 3.16
2778 3034 4.482025 TCCTCCATGTTTTCCCTTATCCAT 59.518 41.667 0.00 0.00 0.00 3.41
2779 3035 3.855599 TCCTCCATGTTTTCCCTTATCCA 59.144 43.478 0.00 0.00 0.00 3.41
2780 3036 4.519906 TCCTCCATGTTTTCCCTTATCC 57.480 45.455 0.00 0.00 0.00 2.59
2781 3037 7.423844 AAATTCCTCCATGTTTTCCCTTATC 57.576 36.000 0.00 0.00 0.00 1.75
2782 3038 7.237471 ACAAAATTCCTCCATGTTTTCCCTTAT 59.763 33.333 0.00 0.00 0.00 1.73
2783 3039 6.556874 ACAAAATTCCTCCATGTTTTCCCTTA 59.443 34.615 0.00 0.00 0.00 2.69
2784 3040 5.369404 ACAAAATTCCTCCATGTTTTCCCTT 59.631 36.000 0.00 0.00 0.00 3.95
2785 3041 4.907269 ACAAAATTCCTCCATGTTTTCCCT 59.093 37.500 0.00 0.00 0.00 4.20
2786 3042 5.227569 ACAAAATTCCTCCATGTTTTCCC 57.772 39.130 0.00 0.00 0.00 3.97
2787 3043 7.227049 TCTACAAAATTCCTCCATGTTTTCC 57.773 36.000 0.00 0.00 0.00 3.13
2788 3044 7.276438 GCATCTACAAAATTCCTCCATGTTTTC 59.724 37.037 0.00 0.00 0.00 2.29
2789 3045 7.099120 GCATCTACAAAATTCCTCCATGTTTT 58.901 34.615 0.00 0.00 0.00 2.43
2790 3046 6.351286 GGCATCTACAAAATTCCTCCATGTTT 60.351 38.462 0.00 0.00 0.00 2.83
2791 3047 5.127682 GGCATCTACAAAATTCCTCCATGTT 59.872 40.000 0.00 0.00 0.00 2.71
2792 3048 4.646492 GGCATCTACAAAATTCCTCCATGT 59.354 41.667 0.00 0.00 0.00 3.21
2793 3049 4.646040 TGGCATCTACAAAATTCCTCCATG 59.354 41.667 0.00 0.00 0.00 3.66
2794 3050 4.870636 TGGCATCTACAAAATTCCTCCAT 58.129 39.130 0.00 0.00 0.00 3.41
2795 3051 4.314522 TGGCATCTACAAAATTCCTCCA 57.685 40.909 0.00 0.00 0.00 3.86
2796 3052 5.659440 TTTGGCATCTACAAAATTCCTCC 57.341 39.130 0.00 0.00 35.11 4.30
2806 3062 9.929180 GAGTTAGACATATATTTGGCATCTACA 57.071 33.333 1.62 0.00 0.00 2.74
2807 3063 9.372369 GGAGTTAGACATATATTTGGCATCTAC 57.628 37.037 1.62 0.00 0.00 2.59
2808 3064 8.540388 GGGAGTTAGACATATATTTGGCATCTA 58.460 37.037 1.62 0.00 0.00 1.98
2809 3065 7.398024 GGGAGTTAGACATATATTTGGCATCT 58.602 38.462 1.62 0.00 0.00 2.90
2810 3066 6.599638 GGGGAGTTAGACATATATTTGGCATC 59.400 42.308 1.62 0.00 0.00 3.91
2811 3067 6.045459 TGGGGAGTTAGACATATATTTGGCAT 59.955 38.462 1.62 0.00 0.00 4.40
2812 3068 5.371176 TGGGGAGTTAGACATATATTTGGCA 59.629 40.000 1.62 0.00 0.00 4.92
2813 3069 5.876357 TGGGGAGTTAGACATATATTTGGC 58.124 41.667 0.00 0.00 0.00 4.52
2814 3070 7.777910 TGTTTGGGGAGTTAGACATATATTTGG 59.222 37.037 0.00 0.00 0.00 3.28
2815 3071 8.746052 TGTTTGGGGAGTTAGACATATATTTG 57.254 34.615 0.00 0.00 0.00 2.32
2816 3072 9.936329 AATGTTTGGGGAGTTAGACATATATTT 57.064 29.630 0.00 0.00 0.00 1.40
2817 3073 9.936329 AAATGTTTGGGGAGTTAGACATATATT 57.064 29.630 0.00 0.00 0.00 1.28
2818 3074 9.936329 AAAATGTTTGGGGAGTTAGACATATAT 57.064 29.630 0.00 0.00 0.00 0.86
2819 3075 9.403583 GAAAATGTTTGGGGAGTTAGACATATA 57.596 33.333 0.00 0.00 0.00 0.86
2820 3076 8.116026 AGAAAATGTTTGGGGAGTTAGACATAT 58.884 33.333 0.00 0.00 0.00 1.78
2821 3077 7.393234 CAGAAAATGTTTGGGGAGTTAGACATA 59.607 37.037 0.00 0.00 0.00 2.29
2822 3078 6.209391 CAGAAAATGTTTGGGGAGTTAGACAT 59.791 38.462 0.00 0.00 0.00 3.06
2823 3079 5.534654 CAGAAAATGTTTGGGGAGTTAGACA 59.465 40.000 0.00 0.00 0.00 3.41
2824 3080 5.535030 ACAGAAAATGTTTGGGGAGTTAGAC 59.465 40.000 0.00 0.00 39.96 2.59
2825 3081 5.701224 ACAGAAAATGTTTGGGGAGTTAGA 58.299 37.500 0.00 0.00 39.96 2.10
2826 3082 6.715264 ACTACAGAAAATGTTTGGGGAGTTAG 59.285 38.462 0.00 0.00 39.96 2.34
2827 3083 6.488683 CACTACAGAAAATGTTTGGGGAGTTA 59.511 38.462 0.00 0.00 39.96 2.24
2828 3084 5.301805 CACTACAGAAAATGTTTGGGGAGTT 59.698 40.000 0.00 0.00 39.96 3.01
2829 3085 4.827284 CACTACAGAAAATGTTTGGGGAGT 59.173 41.667 0.00 0.00 39.96 3.85
2830 3086 5.070001 TCACTACAGAAAATGTTTGGGGAG 58.930 41.667 0.00 0.00 39.96 4.30
2831 3087 5.055265 TCACTACAGAAAATGTTTGGGGA 57.945 39.130 0.00 0.00 39.96 4.81
2832 3088 5.982890 ATCACTACAGAAAATGTTTGGGG 57.017 39.130 0.00 0.00 39.96 4.96
2833 3089 7.219484 AGAATCACTACAGAAAATGTTTGGG 57.781 36.000 0.00 0.00 39.96 4.12
2834 3090 9.185192 GAAAGAATCACTACAGAAAATGTTTGG 57.815 33.333 0.00 0.00 39.96 3.28
2835 3091 8.895845 CGAAAGAATCACTACAGAAAATGTTTG 58.104 33.333 0.00 0.00 39.96 2.93
2836 3092 8.076178 CCGAAAGAATCACTACAGAAAATGTTT 58.924 33.333 0.00 0.00 39.96 2.83
2837 3093 7.308589 CCCGAAAGAATCACTACAGAAAATGTT 60.309 37.037 0.00 0.00 39.96 2.71
2838 3094 6.149474 CCCGAAAGAATCACTACAGAAAATGT 59.851 38.462 0.00 0.00 46.45 2.71
2839 3095 6.546395 CCCGAAAGAATCACTACAGAAAATG 58.454 40.000 0.00 0.00 0.00 2.32
2840 3096 5.123979 GCCCGAAAGAATCACTACAGAAAAT 59.876 40.000 0.00 0.00 0.00 1.82
2841 3097 4.454504 GCCCGAAAGAATCACTACAGAAAA 59.545 41.667 0.00 0.00 0.00 2.29
2842 3098 4.000988 GCCCGAAAGAATCACTACAGAAA 58.999 43.478 0.00 0.00 0.00 2.52
2843 3099 3.596214 GCCCGAAAGAATCACTACAGAA 58.404 45.455 0.00 0.00 0.00 3.02
2844 3100 2.093658 GGCCCGAAAGAATCACTACAGA 60.094 50.000 0.00 0.00 0.00 3.41
2845 3101 2.093447 AGGCCCGAAAGAATCACTACAG 60.093 50.000 0.00 0.00 0.00 2.74
2846 3102 1.906574 AGGCCCGAAAGAATCACTACA 59.093 47.619 0.00 0.00 0.00 2.74
2847 3103 2.168728 AGAGGCCCGAAAGAATCACTAC 59.831 50.000 0.00 0.00 0.00 2.73
2848 3104 2.467880 AGAGGCCCGAAAGAATCACTA 58.532 47.619 0.00 0.00 0.00 2.74
2849 3105 1.280457 AGAGGCCCGAAAGAATCACT 58.720 50.000 0.00 0.00 0.00 3.41
2850 3106 2.937149 GTTAGAGGCCCGAAAGAATCAC 59.063 50.000 0.00 0.00 0.00 3.06
2851 3107 2.838202 AGTTAGAGGCCCGAAAGAATCA 59.162 45.455 0.00 0.00 0.00 2.57
2852 3108 3.545366 AGTTAGAGGCCCGAAAGAATC 57.455 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.