AutoCloner

Multiple sequence alignment - TraesCS2D01G587400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G587400	chr2D	100.000	4067	0	0	1	4067	645238995	645234929	0.000000e+00	7511
1	TraesCS2D01G587400	chr2D	91.369	811	31	12	3249	4042	94085504	94084716	0.000000e+00	1074
2	TraesCS2D01G587400	chr3A	96.238	4067	133	10	1	4067	615139045	615134999	0.000000e+00	6645
3	TraesCS2D01G587400	chr3A	95.444	3161	113	8	1	3160	733882108	733878978	0.000000e+00	5011
4	TraesCS2D01G587400	chr3A	95.034	2940	131	6	1	2940	233469244	233466320	0.000000e+00	4606
5	TraesCS2D01G587400	chr3A	91.531	862	50	7	2859	3699	706571706	706570847	0.000000e+00	1166
6	TraesCS2D01G587400	chr3A	91.697	819	46	14	3251	4067	702241640	702242438	0.000000e+00	1116
7	TraesCS2D01G587400	chr4D	93.986	3741	141	23	355	4067	236674595	236670911	0.000000e+00	5585
8	TraesCS2D01G587400	chr4D	91.093	247	8	9	3821	4067	125802203	125801971	5.070000e-84	322
9	TraesCS2D01G587400	chr4D	90.283	247	10	9	3821	4067	125903839	125903607	1.100000e-80	311
10	TraesCS2D01G587400	chr2A	93.826	3725	175	26	1	3714	605784026	605787706	0.000000e+00	5553
11	TraesCS2D01G587400	chr2A	92.289	1258	69	18	2022	3262	259697662	259698908	0.000000e+00	1760
12	TraesCS2D01G587400	chr1D	93.514	3731	156	19	355	4067	463795577	463791915	0.000000e+00	5470
13	TraesCS2D01G587400	chr5D	96.567	3262	96	8	1	3262	384514445	384511200	0.000000e+00	5389
14	TraesCS2D01G587400	chr5D	96.141	3213	119	5	1	3212	401777974	401781182	0.000000e+00	5241
15	TraesCS2D01G587400	chr5D	92.926	834	35	16	3249	4067	384511160	384510336	0.000000e+00	1192
16	TraesCS2D01G587400	chr5D	92.544	845	31	15	3249	4067	140952298	140951460	0.000000e+00	1182
17	TraesCS2D01G587400	chr5D	87.550	249	12	12	3821	4067	29766113	29765882	1.860000e-68	270
18	TraesCS2D01G587400	chr6A	93.950	3537	164	25	1	3530	136658847	136662340	0.000000e+00	5301
19	TraesCS2D01G587400	chr6A	95.995	2921	108	8	1	2919	11914529	11911616	0.000000e+00	4737
20	TraesCS2D01G587400	chr7A	92.515	3567	161	40	531	4067	56072132	56075622	0.000000e+00	5011
21	TraesCS2D01G587400	chr7D	97.187	2844	79	1	1	2844	17939583	17936741	0.000000e+00	4807
22	TraesCS2D01G587400	chr7D	96.185	1232	36	3	2836	4067	17927137	17925917	0.000000e+00	2004
23	TraesCS2D01G587400	chr5A	92.942	3131	149	20	964	4066	235673729	235676815	0.000000e+00	4492
24	TraesCS2D01G587400	chr3B	88.465	3433	292	38	355	3729	318301811	318305197	0.000000e+00	4050
25	TraesCS2D01G587400	chr3B	91.187	2780	154	16	418	3160	762519715	762516990	0.000000e+00	3692
26	TraesCS2D01G587400	chr3B	88.172	837	53	16	3249	4067	753430396	753429588	0.000000e+00	955
27	TraesCS2D01G587400	chr3B	90.833	120	5	3	3731	3850	318305171	318305284	5.440000e-34	156
28	TraesCS2D01G587400	chr2B	90.979	2871	184	28	418	3262	123797090	123794269	0.000000e+00	3797
29	TraesCS2D01G587400	chr2B	90.789	76	3	3	3190	3262	316250211	316250137	9.300000e-17	99
30	TraesCS2D01G587400	chr6D	93.054	835	28	10	3249	4067	297170540	297169720	0.000000e+00	1194
31	TraesCS2D01G587400	chr6D	92.186	819	33	13	3249	4067	446363447	446362660	0.000000e+00	1129
32	TraesCS2D01G587400	chr4A	97.714	175	4	0	3893	4067	129032044	129032218	6.610000e-78	302
33	TraesCS2D01G587400	chr3D	97.714	175	4	0	3893	4067	57608787	57608961	6.610000e-78	302
34	TraesCS2D01G587400	chr4B	87.854	247	9	11	3821	4067	505001995	505001770	1.860000e-68	270

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G587400	chr2D	645234929	645238995	4066	True	7511.0	7511	100.0000	1	4067	1	chr2D.!!$R2	4066
1	TraesCS2D01G587400	chr2D	94084716	94085504	788	True	1074.0	1074	91.3690	3249	4042	1	chr2D.!!$R1	793
2	TraesCS2D01G587400	chr3A	615134999	615139045	4046	True	6645.0	6645	96.2380	1	4067	1	chr3A.!!$R2	4066
3	TraesCS2D01G587400	chr3A	733878978	733882108	3130	True	5011.0	5011	95.4440	1	3160	1	chr3A.!!$R4	3159
4	TraesCS2D01G587400	chr3A	233466320	233469244	2924	True	4606.0	4606	95.0340	1	2940	1	chr3A.!!$R1	2939
5	TraesCS2D01G587400	chr3A	706570847	706571706	859	True	1166.0	1166	91.5310	2859	3699	1	chr3A.!!$R3	840
6	TraesCS2D01G587400	chr3A	702241640	702242438	798	False	1116.0	1116	91.6970	3251	4067	1	chr3A.!!$F1	816
7	TraesCS2D01G587400	chr4D	236670911	236674595	3684	True	5585.0	5585	93.9860	355	4067	1	chr4D.!!$R3	3712
8	TraesCS2D01G587400	chr2A	605784026	605787706	3680	False	5553.0	5553	93.8260	1	3714	1	chr2A.!!$F2	3713
9	TraesCS2D01G587400	chr2A	259697662	259698908	1246	False	1760.0	1760	92.2890	2022	3262	1	chr2A.!!$F1	1240
10	TraesCS2D01G587400	chr1D	463791915	463795577	3662	True	5470.0	5470	93.5140	355	4067	1	chr1D.!!$R1	3712
11	TraesCS2D01G587400	chr5D	401777974	401781182	3208	False	5241.0	5241	96.1410	1	3212	1	chr5D.!!$F1	3211
12	TraesCS2D01G587400	chr5D	384510336	384514445	4109	True	3290.5	5389	94.7465	1	4067	2	chr5D.!!$R3	4066
13	TraesCS2D01G587400	chr5D	140951460	140952298	838	True	1182.0	1182	92.5440	3249	4067	1	chr5D.!!$R2	818
14	TraesCS2D01G587400	chr6A	136658847	136662340	3493	False	5301.0	5301	93.9500	1	3530	1	chr6A.!!$F1	3529
15	TraesCS2D01G587400	chr6A	11911616	11914529	2913	True	4737.0	4737	95.9950	1	2919	1	chr6A.!!$R1	2918
16	TraesCS2D01G587400	chr7A	56072132	56075622	3490	False	5011.0	5011	92.5150	531	4067	1	chr7A.!!$F1	3536
17	TraesCS2D01G587400	chr7D	17936741	17939583	2842	True	4807.0	4807	97.1870	1	2844	1	chr7D.!!$R2	2843
18	TraesCS2D01G587400	chr7D	17925917	17927137	1220	True	2004.0	2004	96.1850	2836	4067	1	chr7D.!!$R1	1231
19	TraesCS2D01G587400	chr5A	235673729	235676815	3086	False	4492.0	4492	92.9420	964	4066	1	chr5A.!!$F1	3102
20	TraesCS2D01G587400	chr3B	762516990	762519715	2725	True	3692.0	3692	91.1870	418	3160	1	chr3B.!!$R2	2742
21	TraesCS2D01G587400	chr3B	318301811	318305284	3473	False	2103.0	4050	89.6490	355	3850	2	chr3B.!!$F1	3495
22	TraesCS2D01G587400	chr3B	753429588	753430396	808	True	955.0	955	88.1720	3249	4067	1	chr3B.!!$R1	818
23	TraesCS2D01G587400	chr2B	123794269	123797090	2821	True	3797.0	3797	90.9790	418	3262	1	chr2B.!!$R1	2844
24	TraesCS2D01G587400	chr6D	297169720	297170540	820	True	1194.0	1194	93.0540	3249	4067	1	chr6D.!!$R1	818
25	TraesCS2D01G587400	chr6D	446362660	446363447	787	True	1129.0	1129	92.1860	3249	4067	1	chr6D.!!$R2	818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
107	108	1.073763	TGGTTAGTGGCAGTGCTGATT	59.926	47.619	16.11	1.56	0.00	2.57	F
743	744	2.683362	GCTTGCTCCTTGTGGTTATACC	59.317	50.000	0.00	0.00	39.22	2.73	F
2006	2044	0.250513	GAAGGGATGAAGCGTCCAGT	59.749	55.000	7.87	0.00	41.05	4.00	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1540	1564	1.520342	GTCTCAGAGTCCATGCGCC	60.520	63.158	4.18	0.00	0.00	6.53	R
2253	2294	0.611062	TGATGGTCTCCGAGTCCGTT	60.611	55.000	7.70	0.00	0.00	4.44	R
3566	3761	0.028505	CCGCCTTCATCTTGATTGCG	59.971	55.000	11.77	11.77	42.51	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	75	8.170730	TGATCTAGTTCCATAGCTATGTTCCTA	58.829	37.037	27.75	21.18	31.82	2.94
107	108	1.073763	TGGTTAGTGGCAGTGCTGATT	59.926	47.619	16.11	1.56	0.00	2.57
144	145	7.734865	TCCTATGGGACTCTGTTGTTCATATAT	59.265	37.037	0.00	0.00	36.57	0.86
743	744	2.683362	GCTTGCTCCTTGTGGTTATACC	59.317	50.000	0.00	0.00	39.22	2.73
918	919	3.433343	TGTCTGTCCATGCATTCCAAAT	58.567	40.909	0.00	0.00	0.00	2.32
1049	1050	2.784596	CATCGGTGCAATCGCGTT	59.215	55.556	5.77	0.00	42.97	4.84
1121	1122	6.531503	TCAAGAAGGTAGTGGAGTTATCAG	57.468	41.667	0.00	0.00	0.00	2.90
1166	1167	5.677319	AAGGAGGATGAAGTTATTGACGA	57.323	39.130	0.00	0.00	0.00	4.20
1286	1287	4.033009	TGCTCACATATTTCTCCCTCTGA	58.967	43.478	0.00	0.00	0.00	3.27
1540	1564	1.363744	GACCATCAGGAAAGTCTGCG	58.636	55.000	0.00	0.00	38.69	5.18
1728	1754	3.709653	ACCTTCTATTGACGGGAATGCTA	59.290	43.478	4.79	0.00	36.08	3.49
1954	1992	2.103941	GGGCTAGAGAGAATCACCAAGG	59.896	54.545	0.00	0.00	37.82	3.61
2006	2044	0.250513	GAAGGGATGAAGCGTCCAGT	59.749	55.000	7.87	0.00	41.05	4.00
2010	2048	1.610624	GGGATGAAGCGTCCAGTGAAA	60.611	52.381	7.87	0.00	41.05	2.69
2238	2279	1.278127	TGTTAGCTGTCTTGGTAGGCC	59.722	52.381	0.00	0.00	0.00	5.19
2253	2294	5.083122	TGGTAGGCCAATTTTGAGATGAAA	58.917	37.500	5.01	0.00	42.83	2.69
2573	2617	5.120830	ACAAGATGAATCGAGAAAAAGTCGG	59.879	40.000	0.00	0.00	38.02	4.79
2681	2725	9.973661	TTTGATCCTCCTTGAATAACATTTCTA	57.026	29.630	0.00	0.00	0.00	2.10
2779	2823	3.119495	GCGATTGACTTGTTTAAGGCCAT	60.119	43.478	5.01	0.00	41.51	4.40
2856	2929	1.272313	ACTCCATGCTTTGTCCATGCT	60.272	47.619	0.00	0.00	38.93	3.79
2884	2976	1.985473	TTCACAGCCAGCTTTGATGT	58.015	45.000	9.16	0.00	33.46	3.06
3449	3641	1.000521	CAGGAATGCTGGGCTCCAA	60.001	57.895	0.00	0.00	30.80	3.53
3562	3757	5.494724	AGCTGAAGTGATGCAAGAAGAATA	58.505	37.500	0.00	0.00	0.00	1.75
3566	3761	3.549794	AGTGATGCAAGAAGAATAGGCC	58.450	45.455	0.00	0.00	0.00	5.19
3610	3805	2.357396	TGAAGCTGCACGCGACAT	60.357	55.556	15.93	0.00	45.59	3.06
3628	3823	0.251033	ATGGAACTTGAGCTGCTGCA	60.251	50.000	18.42	0.88	42.74	4.41
3638	3833	0.179037	AGCTGCTGCACAAGAAGTCA	60.179	50.000	18.42	0.00	42.74	3.41
3919	4286	4.696877	CAGTGAACTTGTGATGGCTCATTA	59.303	41.667	0.00	0.00	32.98	1.90
3920	4287	5.356190	CAGTGAACTTGTGATGGCTCATTAT	59.644	40.000	0.00	0.00	32.98	1.28
3921	4288	5.356190	AGTGAACTTGTGATGGCTCATTATG	59.644	40.000	0.00	0.00	32.98	1.90
3922	4289	4.641541	TGAACTTGTGATGGCTCATTATGG	59.358	41.667	0.00	0.00	32.98	2.74
3923	4290	4.508551	ACTTGTGATGGCTCATTATGGA	57.491	40.909	0.00	0.00	32.98	3.41
3924	4291	4.858850	ACTTGTGATGGCTCATTATGGAA	58.141	39.130	0.00	0.00	32.98	3.53
3925	4292	4.641989	ACTTGTGATGGCTCATTATGGAAC	59.358	41.667	0.00	0.00	32.98	3.62
3926	4293	3.554934	TGTGATGGCTCATTATGGAACC	58.445	45.455	0.00	0.00	32.98	3.62
3927	4294	3.053768	TGTGATGGCTCATTATGGAACCA	60.054	43.478	0.00	0.00	37.43	3.67
3928	4295	3.567164	GTGATGGCTCATTATGGAACCAG	59.433	47.826	0.00	0.00	36.54	4.00
3929	4296	3.202818	TGATGGCTCATTATGGAACCAGT	59.797	43.478	0.00	0.00	36.54	4.00
3930	4297	3.003394	TGGCTCATTATGGAACCAGTG	57.997	47.619	0.00	0.00	29.94	3.66
3931	4298	2.575735	TGGCTCATTATGGAACCAGTGA	59.424	45.455	0.00	3.54	29.94	3.41
3932	4299	3.010027	TGGCTCATTATGGAACCAGTGAA	59.990	43.478	0.00	0.00	29.94	3.18
3933	4300	3.378427	GGCTCATTATGGAACCAGTGAAC	59.622	47.826	0.00	0.44	0.00	3.18
3934	4301	4.265073	GCTCATTATGGAACCAGTGAACT	58.735	43.478	0.00	0.00	0.00	3.01
3935	4302	4.702131	GCTCATTATGGAACCAGTGAACTT	59.298	41.667	0.00	0.00	0.00	2.66
3936	4303	5.392380	GCTCATTATGGAACCAGTGAACTTG	60.392	44.000	0.00	0.00	0.00	3.16
3937	4304	5.630121	TCATTATGGAACCAGTGAACTTGT	58.370	37.500	0.00	0.00	0.00	3.16
3938	4305	5.473162	TCATTATGGAACCAGTGAACTTGTG	59.527	40.000	0.00	0.00	0.00	3.33
3939	4306	3.576078	ATGGAACCAGTGAACTTGTGA	57.424	42.857	0.00	0.00	0.00	3.58
3940	4307	3.576078	TGGAACCAGTGAACTTGTGAT	57.424	42.857	0.00	0.00	0.00	3.06
3941	4308	3.213506	TGGAACCAGTGAACTTGTGATG	58.786	45.455	0.00	0.00	0.00	3.07
3942	4309	2.554032	GGAACCAGTGAACTTGTGATGG	59.446	50.000	0.00	0.00	0.00	3.51
3943	4310	1.609208	ACCAGTGAACTTGTGATGGC	58.391	50.000	0.00	0.00	0.00	4.40
3944	4311	1.143684	ACCAGTGAACTTGTGATGGCT	59.856	47.619	0.00	0.00	0.00	4.75
3945	4312	1.808945	CCAGTGAACTTGTGATGGCTC	59.191	52.381	0.00	0.00	0.00	4.70
3946	4313	2.497138	CAGTGAACTTGTGATGGCTCA	58.503	47.619	0.00	0.00	0.00	4.26
3947	4314	3.079578	CAGTGAACTTGTGATGGCTCAT	58.920	45.455	0.00	0.00	32.98	2.90
3948	4315	3.504906	CAGTGAACTTGTGATGGCTCATT	59.495	43.478	0.00	0.00	32.98	2.57
4061	4444	2.650778	GGACTGCAAAAAGGCCGG	59.349	61.111	0.00	0.00	35.00	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	75	4.021456	GCCACTAACCAATTTAGCAAACCT	60.021	41.667	0.00	0.00	41.03	3.50
107	108	3.782523	AGTCCCATAGGAAGCAATGAGAA	59.217	43.478	0.00	0.00	46.38	2.87
282	283	4.644685	ACAAACTAACACAGCCAGACAATT	59.355	37.500	0.00	0.00	0.00	2.32
722	723	2.683362	GGTATAACCACAAGGAGCAAGC	59.317	50.000	0.00	0.00	38.42	4.01
743	744	5.120208	AGACACGGATTTTATGAAACTGACG	59.880	40.000	0.00	0.00	0.00	4.35
951	952	3.090037	CTCGGTGAGAGGTTCCTCTTTA	58.910	50.000	20.48	11.47	42.78	1.85
1049	1050	7.537596	ACACCATTTGTTTTCCTAATCATCA	57.462	32.000	0.00	0.00	33.09	3.07
1121	1122	3.452627	AGGATTGTACTCTGGGTCATCAC	59.547	47.826	0.00	0.00	0.00	3.06
1164	1165	3.533606	ACATCATCCACTTCCTCTTCG	57.466	47.619	0.00	0.00	0.00	3.79
1166	1167	4.647564	ACAACATCATCCACTTCCTCTT	57.352	40.909	0.00	0.00	0.00	2.85
1540	1564	1.520342	GTCTCAGAGTCCATGCGCC	60.520	63.158	4.18	0.00	0.00	6.53
1728	1754	5.163642	GCTGCTGTTCTTCTTCATTGATGAT	60.164	40.000	3.36	0.00	36.56	2.45
2006	2044	1.601759	GCTGCCTGCAGAGGTTTCA	60.602	57.895	22.64	2.20	46.30	2.69
2222	2263	4.232905	TGGCCTACCAAGACAGCT	57.767	55.556	3.32	0.00	45.37	4.24
2238	2279	5.565259	CGAGTCCGTTTTCATCTCAAAATTG	59.435	40.000	0.00	0.00	0.00	2.32
2253	2294	0.611062	TGATGGTCTCCGAGTCCGTT	60.611	55.000	7.70	0.00	0.00	4.44
2539	2583	0.781787	TTCATCTTGTTCGACACGCG	59.218	50.000	3.53	3.53	42.69	6.01
2541	2585	2.914838	TCGATTCATCTTGTTCGACACG	59.085	45.455	0.00	0.00	35.85	4.49
2573	2617	4.254492	GGAACCAGTTCTCTGATTGTACC	58.746	47.826	10.19	0.00	43.76	3.34
2779	2823	2.076100	CGTGCTTCTTGCTATTGTGGA	58.924	47.619	0.00	0.00	43.37	4.02
2856	2929	1.881973	GCTGGCTGTGAATCAAACAGA	59.118	47.619	7.72	0.00	46.55	3.41
2884	2976	4.325028	AGCATCAAACAGCATCAAACAA	57.675	36.364	0.00	0.00	0.00	2.83
3183	3311	9.814899	AAGAAGATGATGACTAGTAACTTGATG	57.185	33.333	0.00	0.00	0.00	3.07
3439	3631	2.333069	TCCTAGATGATTGGAGCCCAG	58.667	52.381	0.00	0.00	33.81	4.45
3449	3641	3.776969	TGCCAGAGTTGTTCCTAGATGAT	59.223	43.478	0.00	0.00	0.00	2.45
3489	3684	2.306341	AGATCACGAACATGAGCAGG	57.694	50.000	0.00	0.00	37.47	4.85
3562	3757	1.386533	CTTCATCTTGATTGCGGCCT	58.613	50.000	0.00	0.00	0.00	5.19
3566	3761	0.028505	CCGCCTTCATCTTGATTGCG	59.971	55.000	11.77	11.77	42.51	4.85
3610	3805	1.148949	TGCAGCAGCTCAAGTTCCA	59.851	52.632	1.76	0.00	42.74	3.53
3628	3823	4.142609	TCTTGCTCTTGTGACTTCTTGT	57.857	40.909	0.00	0.00	0.00	3.16
3638	3833	4.994217	GCTAACTTCTCTTCTTGCTCTTGT	59.006	41.667	0.00	0.00	0.00	3.16
3919	4286	3.576078	TCACAAGTTCACTGGTTCCAT	57.424	42.857	0.00	0.00	0.00	3.41
3920	4287	3.213506	CATCACAAGTTCACTGGTTCCA	58.786	45.455	0.00	0.00	0.00	3.53
3921	4288	2.554032	CCATCACAAGTTCACTGGTTCC	59.446	50.000	0.00	0.00	0.00	3.62
3922	4289	2.030805	GCCATCACAAGTTCACTGGTTC	60.031	50.000	0.00	0.00	0.00	3.62
3923	4290	1.956477	GCCATCACAAGTTCACTGGTT	59.044	47.619	0.00	0.00	0.00	3.67
3924	4291	1.143684	AGCCATCACAAGTTCACTGGT	59.856	47.619	0.00	0.00	0.00	4.00
3925	4292	1.808945	GAGCCATCACAAGTTCACTGG	59.191	52.381	0.00	0.00	0.00	4.00
3926	4293	2.497138	TGAGCCATCACAAGTTCACTG	58.503	47.619	0.00	0.00	0.00	3.66
3927	4294	2.936919	TGAGCCATCACAAGTTCACT	57.063	45.000	0.00	0.00	0.00	3.41
3928	4295	4.510038	AAATGAGCCATCACAAGTTCAC	57.490	40.909	0.00	0.00	38.57	3.18
3929	4296	4.262121	CCAAAATGAGCCATCACAAGTTCA	60.262	41.667	0.00	0.00	38.57	3.18
3930	4297	4.022068	TCCAAAATGAGCCATCACAAGTTC	60.022	41.667	0.00	0.00	38.57	3.01
3931	4298	3.896888	TCCAAAATGAGCCATCACAAGTT	59.103	39.130	0.00	0.00	38.57	2.66
3932	4299	3.499338	TCCAAAATGAGCCATCACAAGT	58.501	40.909	0.00	0.00	38.57	3.16
3933	4300	4.430007	CATCCAAAATGAGCCATCACAAG	58.570	43.478	0.00	0.00	38.57	3.16
3934	4301	3.368635	GCATCCAAAATGAGCCATCACAA	60.369	43.478	0.00	0.00	38.57	3.33
3935	4302	2.166870	GCATCCAAAATGAGCCATCACA	59.833	45.455	0.00	0.00	38.57	3.58
3936	4303	2.429610	AGCATCCAAAATGAGCCATCAC	59.570	45.455	0.00	0.00	38.57	3.06
3937	4304	2.742348	AGCATCCAAAATGAGCCATCA	58.258	42.857	0.00	0.00	40.50	3.07
3938	4305	4.280174	ACATAGCATCCAAAATGAGCCATC	59.720	41.667	0.00	0.00	0.00	3.51
3939	4306	4.038763	CACATAGCATCCAAAATGAGCCAT	59.961	41.667	0.00	0.00	0.00	4.40
3940	4307	3.382227	CACATAGCATCCAAAATGAGCCA	59.618	43.478	0.00	0.00	0.00	4.75
3941	4308	3.382546	ACACATAGCATCCAAAATGAGCC	59.617	43.478	0.00	0.00	0.00	4.70
3942	4309	4.644103	ACACATAGCATCCAAAATGAGC	57.356	40.909	0.00	0.00	0.00	4.26
3943	4310	6.932356	ACTACACATAGCATCCAAAATGAG	57.068	37.500	0.00	0.00	30.75	2.90
3944	4311	8.839343	CATAACTACACATAGCATCCAAAATGA	58.161	33.333	0.00	0.00	30.75	2.57
3945	4312	7.592533	GCATAACTACACATAGCATCCAAAATG	59.407	37.037	0.00	0.00	30.75	2.32
3946	4313	7.285172	TGCATAACTACACATAGCATCCAAAAT	59.715	33.333	0.00	0.00	30.75	1.82
3947	4314	6.601217	TGCATAACTACACATAGCATCCAAAA	59.399	34.615	0.00	0.00	30.75	2.44
3948	4315	6.118852	TGCATAACTACACATAGCATCCAAA	58.881	36.000	0.00	0.00	30.75	3.28

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.