Multiple sequence alignment - TraesCS2D01G587300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G587300 chr2D 100.000 4791 0 0 1 4791 645049932 645045142 0.000000e+00 8848
1 TraesCS2D01G587300 chr2D 95.455 264 9 2 4289 4551 125438980 125439241 7.420000e-113 418
2 TraesCS2D01G587300 chr2A 93.308 3721 136 44 610 4292 770414857 770411212 0.000000e+00 5387
3 TraesCS2D01G587300 chr2A 88.492 1260 89 23 291 1539 770463553 770462339 0.000000e+00 1472
4 TraesCS2D01G587300 chr2A 87.975 1264 92 26 290 1539 770430419 770429202 0.000000e+00 1437
5 TraesCS2D01G587300 chr2A 87.589 1257 86 30 290 1539 770425427 770424234 0.000000e+00 1393
6 TraesCS2D01G587300 chr2A 96.484 256 6 2 4293 4548 477246135 477246387 2.060000e-113 420
7 TraesCS2D01G587300 chr2A 89.200 250 5 8 4552 4791 770411206 770410969 4.690000e-75 292
8 TraesCS2D01G587300 chr2B 92.995 2598 108 40 1743 4303 790440787 790443347 0.000000e+00 3722
9 TraesCS2D01G587300 chr2B 86.697 669 39 14 516 1165 790439567 790440204 0.000000e+00 697
10 TraesCS2D01G587300 chr2B 86.957 483 34 10 1295 1748 790440278 790440760 2.560000e-142 516
11 TraesCS2D01G587300 chr2B 91.935 124 9 1 1 124 790438869 790438991 6.370000e-39 172
12 TraesCS2D01G587300 chr5A 96.139 259 8 2 4293 4551 367962818 367963074 5.730000e-114 422
13 TraesCS2D01G587300 chr5A 94.526 274 12 2 4279 4551 665445867 665445596 2.060000e-113 420
14 TraesCS2D01G587300 chr5A 95.437 263 8 3 4290 4551 309393540 309393281 2.670000e-112 416
15 TraesCS2D01G587300 chr6A 96.471 255 7 1 4297 4551 169789411 169789159 2.060000e-113 420
16 TraesCS2D01G587300 chr3A 96.471 255 7 1 4297 4551 58274811 58275063 2.060000e-113 420
17 TraesCS2D01G587300 chr3A 95.437 263 8 3 4290 4551 503187748 503188007 2.670000e-112 416
18 TraesCS2D01G587300 chr7A 95.437 263 8 3 4290 4551 404836938 404836679 2.670000e-112 416
19 TraesCS2D01G587300 chr4B 85.393 267 17 11 1352 1596 356438533 356438799 1.710000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G587300 chr2D 645045142 645049932 4790 True 8848.00 8848 100.000 1 4791 1 chr2D.!!$R1 4790
1 TraesCS2D01G587300 chr2A 770410969 770414857 3888 True 2839.50 5387 91.254 610 4791 2 chr2A.!!$R2 4181
2 TraesCS2D01G587300 chr2A 770462339 770463553 1214 True 1472.00 1472 88.492 291 1539 1 chr2A.!!$R1 1248
3 TraesCS2D01G587300 chr2A 770424234 770430419 6185 True 1415.00 1437 87.782 290 1539 2 chr2A.!!$R3 1249
4 TraesCS2D01G587300 chr2B 790438869 790443347 4478 False 1276.75 3722 89.646 1 4303 4 chr2B.!!$F1 4302

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 437 0.033504 CCACCGGCGCATAGACTAAT 59.966 55.0 10.83 0.0 0.00 1.73 F
464 705 0.036671 CAGCTCCATGTGCAGAGACA 60.037 55.0 4.95 0.0 31.43 3.41 F
1181 6455 0.108138 AGCGAATCCTTCCTTCCACG 60.108 55.0 0.00 0.0 0.00 4.94 F
1182 6456 0.108329 GCGAATCCTTCCTTCCACGA 60.108 55.0 0.00 0.0 0.00 4.35 F
2534 7929 0.684805 AGTTGGCGGAAAACACCCAA 60.685 50.0 0.00 0.0 35.14 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 7370 1.039856 GCAAGCACCCTGAGGAAAAA 58.960 50.000 0.00 0.0 36.73 1.94 R
2248 7626 4.599241 ACCTAATCATGGTAAGGCAGCTAT 59.401 41.667 7.74 0.0 35.80 2.97 R
2937 8332 1.800586 ACACTGTCATTAAGCAGCACG 59.199 47.619 0.00 0.0 36.26 5.34 R
2995 8390 2.124612 TGGATGGCCAGCATCACG 60.125 61.111 24.75 0.0 39.92 4.35 R
3864 9271 0.518559 GAACGATTTTCACGCGCTCC 60.519 55.000 5.73 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.156343 AACTGCCTCGTGAGAAAGTC 57.844 50.000 0.00 0.00 41.32 3.01
50 51 1.040646 ACTGCCTCGTGAGAAAGTCA 58.959 50.000 0.00 0.00 41.32 3.41
51 52 1.412710 ACTGCCTCGTGAGAAAGTCAA 59.587 47.619 0.00 0.00 41.32 3.18
134 135 7.667575 AATATACATTTTAACATGGTGGCCA 57.332 32.000 0.00 0.00 38.19 5.36
135 136 3.676291 ACATTTTAACATGGTGGCCAC 57.324 42.857 28.57 28.57 35.80 5.01
136 137 3.238597 ACATTTTAACATGGTGGCCACT 58.761 40.909 33.91 17.44 35.80 4.00
137 138 3.258123 ACATTTTAACATGGTGGCCACTC 59.742 43.478 33.91 23.85 35.80 3.51
139 140 2.666272 TTAACATGGTGGCCACTCAA 57.334 45.000 33.91 20.59 35.80 3.02
140 141 2.198827 TAACATGGTGGCCACTCAAG 57.801 50.000 33.91 26.28 35.80 3.02
141 142 0.478072 AACATGGTGGCCACTCAAGA 59.522 50.000 33.91 14.18 35.80 3.02
142 143 0.037303 ACATGGTGGCCACTCAAGAG 59.963 55.000 33.91 22.85 35.80 2.85
143 144 0.325933 CATGGTGGCCACTCAAGAGA 59.674 55.000 33.91 9.46 35.80 3.10
145 146 1.298014 GGTGGCCACTCAAGAGAGG 59.702 63.158 33.91 8.92 46.44 3.69
146 147 1.298014 GTGGCCACTCAAGAGAGGG 59.702 63.158 29.12 10.75 46.44 4.30
150 151 1.079543 CCACTCAAGAGAGGGCACG 60.080 63.158 3.73 0.00 44.24 5.34
151 152 1.079543 CACTCAAGAGAGGGCACGG 60.080 63.158 3.73 0.00 46.44 4.94
152 153 2.286523 ACTCAAGAGAGGGCACGGG 61.287 63.158 3.73 0.00 46.44 5.28
153 154 1.984570 CTCAAGAGAGGGCACGGGA 60.985 63.158 0.00 0.00 38.26 5.14
154 155 1.306141 TCAAGAGAGGGCACGGGAT 60.306 57.895 0.00 0.00 0.00 3.85
155 156 1.153289 CAAGAGAGGGCACGGGATG 60.153 63.158 0.00 0.00 0.00 3.51
163 164 3.736483 GCACGGGATGCGAATGAT 58.264 55.556 0.00 0.00 46.55 2.45
164 165 2.024918 GCACGGGATGCGAATGATT 58.975 52.632 0.00 0.00 46.55 2.57
165 166 0.040958 GCACGGGATGCGAATGATTC 60.041 55.000 0.00 0.00 46.55 2.52
169 170 1.528129 GGGATGCGAATGATTCCTCC 58.472 55.000 0.00 3.93 0.00 4.30
170 171 1.151668 GGATGCGAATGATTCCTCCG 58.848 55.000 0.00 0.00 0.00 4.63
174 175 1.956170 CGAATGATTCCTCCGGCCG 60.956 63.158 21.04 21.04 0.00 6.13
181 182 2.866523 ATTCCTCCGGCCGAGTGGTA 62.867 60.000 30.73 19.70 36.82 3.25
183 184 2.652095 CCTCCGGCCGAGTGGTAAA 61.652 63.158 30.73 0.00 36.82 2.01
186 187 1.186917 TCCGGCCGAGTGGTAAAAGA 61.187 55.000 30.73 8.18 37.67 2.52
188 189 1.076332 CGGCCGAGTGGTAAAAGAAG 58.924 55.000 24.07 0.00 37.67 2.85
189 190 1.607251 CGGCCGAGTGGTAAAAGAAGT 60.607 52.381 24.07 0.00 37.67 3.01
190 191 2.074576 GGCCGAGTGGTAAAAGAAGTC 58.925 52.381 0.00 0.00 37.67 3.01
191 192 2.289506 GGCCGAGTGGTAAAAGAAGTCT 60.290 50.000 0.00 0.00 37.67 3.24
192 193 2.994578 GCCGAGTGGTAAAAGAAGTCTC 59.005 50.000 0.00 0.00 37.67 3.36
193 194 3.306156 GCCGAGTGGTAAAAGAAGTCTCT 60.306 47.826 0.00 0.00 37.67 3.10
195 196 4.686554 CCGAGTGGTAAAAGAAGTCTCTTG 59.313 45.833 0.00 0.00 41.23 3.02
196 197 5.509163 CCGAGTGGTAAAAGAAGTCTCTTGA 60.509 44.000 0.00 0.00 41.23 3.02
197 198 6.159988 CGAGTGGTAAAAGAAGTCTCTTGAT 58.840 40.000 0.00 0.00 41.23 2.57
198 199 6.090088 CGAGTGGTAAAAGAAGTCTCTTGATG 59.910 42.308 0.00 0.00 41.23 3.07
199 200 6.831976 AGTGGTAAAAGAAGTCTCTTGATGT 58.168 36.000 0.00 0.00 41.23 3.06
202 203 4.999751 AAAAGAAGTCTCTTGATGTCGC 57.000 40.909 0.00 0.00 41.23 5.19
203 204 2.663826 AGAAGTCTCTTGATGTCGCC 57.336 50.000 0.00 0.00 0.00 5.54
204 205 1.135257 AGAAGTCTCTTGATGTCGCCG 60.135 52.381 0.00 0.00 0.00 6.46
208 209 0.681887 TCTCTTGATGTCGCCGGGTA 60.682 55.000 2.18 0.00 0.00 3.69
209 210 0.174845 CTCTTGATGTCGCCGGGTAA 59.825 55.000 2.18 0.00 0.00 2.85
210 211 0.609151 TCTTGATGTCGCCGGGTAAA 59.391 50.000 2.18 0.00 0.00 2.01
211 212 1.002201 TCTTGATGTCGCCGGGTAAAA 59.998 47.619 2.18 0.00 0.00 1.52
212 213 2.014128 CTTGATGTCGCCGGGTAAAAT 58.986 47.619 2.18 0.00 0.00 1.82
213 214 1.658994 TGATGTCGCCGGGTAAAATC 58.341 50.000 2.18 0.00 0.00 2.17
214 215 1.066071 TGATGTCGCCGGGTAAAATCA 60.066 47.619 2.18 0.00 0.00 2.57
216 217 0.322322 TGTCGCCGGGTAAAATCACT 59.678 50.000 2.18 0.00 0.00 3.41
217 218 1.004595 GTCGCCGGGTAAAATCACTC 58.995 55.000 2.18 0.00 0.00 3.51
218 219 0.108041 TCGCCGGGTAAAATCACTCC 60.108 55.000 2.18 0.00 0.00 3.85
219 220 1.426041 CGCCGGGTAAAATCACTCCG 61.426 60.000 2.18 0.00 40.32 4.63
223 224 1.093496 GGGTAAAATCACTCCGGCCG 61.093 60.000 21.04 21.04 0.00 6.13
224 225 1.093496 GGTAAAATCACTCCGGCCGG 61.093 60.000 39.13 39.13 0.00 6.13
225 226 1.093496 GTAAAATCACTCCGGCCGGG 61.093 60.000 42.36 33.07 35.59 5.73
226 227 1.266160 TAAAATCACTCCGGCCGGGA 61.266 55.000 42.36 31.55 44.68 5.14
227 228 1.921869 AAAATCACTCCGGCCGGGAT 61.922 55.000 42.36 32.26 46.04 3.85
228 229 2.608970 AAATCACTCCGGCCGGGATG 62.609 60.000 42.36 36.14 46.04 3.51
238 239 3.564027 CCGGGATGCGAACGAAGC 61.564 66.667 0.00 0.00 0.00 3.86
239 240 3.564027 CGGGATGCGAACGAAGCC 61.564 66.667 0.36 0.36 0.00 4.35
240 241 2.125106 GGGATGCGAACGAAGCCT 60.125 61.111 9.34 0.00 0.00 4.58
241 242 2.174319 GGGATGCGAACGAAGCCTC 61.174 63.158 9.34 0.00 0.00 4.70
242 243 1.153549 GGATGCGAACGAAGCCTCT 60.154 57.895 1.96 0.00 31.42 3.69
243 244 1.148759 GGATGCGAACGAAGCCTCTC 61.149 60.000 1.96 0.00 31.42 3.20
245 246 0.037326 ATGCGAACGAAGCCTCTCAA 60.037 50.000 0.00 0.00 0.00 3.02
246 247 0.667487 TGCGAACGAAGCCTCTCAAG 60.667 55.000 0.00 0.00 0.00 3.02
247 248 0.388649 GCGAACGAAGCCTCTCAAGA 60.389 55.000 0.00 0.00 0.00 3.02
248 249 1.623359 CGAACGAAGCCTCTCAAGAG 58.377 55.000 0.00 0.00 41.71 2.85
250 251 2.161808 CGAACGAAGCCTCTCAAGAGTA 59.838 50.000 6.30 0.00 40.48 2.59
251 252 3.729462 CGAACGAAGCCTCTCAAGAGTAG 60.729 52.174 6.30 0.00 40.48 2.57
252 253 1.474879 ACGAAGCCTCTCAAGAGTAGC 59.525 52.381 6.30 3.66 40.48 3.58
254 255 2.094494 CGAAGCCTCTCAAGAGTAGCAA 60.094 50.000 13.59 0.00 40.48 3.91
255 256 3.258228 GAAGCCTCTCAAGAGTAGCAAC 58.742 50.000 13.59 6.10 40.48 4.17
256 257 1.552792 AGCCTCTCAAGAGTAGCAACC 59.447 52.381 13.59 0.00 40.48 3.77
257 258 1.552792 GCCTCTCAAGAGTAGCAACCT 59.447 52.381 6.30 0.00 40.48 3.50
258 259 2.027653 GCCTCTCAAGAGTAGCAACCTT 60.028 50.000 6.30 0.00 40.48 3.50
259 260 3.594134 CCTCTCAAGAGTAGCAACCTTG 58.406 50.000 6.30 0.00 40.48 3.61
260 261 2.999355 CTCTCAAGAGTAGCAACCTTGC 59.001 50.000 1.51 1.51 44.29 4.01
269 270 2.597217 CAACCTTGCTCCGCCCAA 60.597 61.111 0.00 0.00 0.00 4.12
270 271 2.197324 AACCTTGCTCCGCCCAAA 59.803 55.556 0.00 0.00 0.00 3.28
272 273 1.535204 AACCTTGCTCCGCCCAAATG 61.535 55.000 0.00 0.00 0.00 2.32
286 287 1.827344 CCAAATGGGAAAAGAGAGGGC 59.173 52.381 0.00 0.00 40.01 5.19
287 288 2.528564 CAAATGGGAAAAGAGAGGGCA 58.471 47.619 0.00 0.00 0.00 5.36
288 289 3.102204 CAAATGGGAAAAGAGAGGGCAT 58.898 45.455 0.00 0.00 0.00 4.40
302 303 2.571216 GGCATGGGCAGCATCATCC 61.571 63.158 0.00 0.00 43.71 3.51
322 405 2.480555 CGTCATGGGTGAAAGCGC 59.519 61.111 0.00 0.00 35.80 5.92
354 437 0.033504 CCACCGGCGCATAGACTAAT 59.966 55.000 10.83 0.00 0.00 1.73
365 448 4.561105 GCATAGACTAATGGTGCTAGACC 58.439 47.826 0.00 0.00 46.37 3.85
374 457 4.063967 TGCTAGACCACCGGTGCG 62.064 66.667 29.75 23.13 35.25 5.34
394 635 2.975799 CACACACCCCGAAACCGG 60.976 66.667 0.00 0.00 46.35 5.28
419 660 2.222027 GATCCAATGGGTCTAAAGCCG 58.778 52.381 5.05 0.00 46.58 5.52
423 664 3.023832 CCAATGGGTCTAAAGCCGAAAT 58.976 45.455 0.00 0.00 46.58 2.17
427 668 1.743394 GGGTCTAAAGCCGAAATGTGG 59.257 52.381 0.00 0.00 32.35 4.17
464 705 0.036671 CAGCTCCATGTGCAGAGACA 60.037 55.000 4.95 0.00 31.43 3.41
481 722 1.679944 GACAGCATGGCTTTGGAGCTA 60.680 52.381 0.00 0.00 44.72 3.32
521 762 1.068741 GGGAGGTTGCTATTCGACGAT 59.931 52.381 0.00 0.00 0.00 3.73
524 765 3.553096 GGAGGTTGCTATTCGACGATGAT 60.553 47.826 0.00 0.00 0.00 2.45
536 786 2.350772 CGACGATGATGACATGGATCGA 60.351 50.000 23.67 0.00 37.62 3.59
547 797 5.111989 TGACATGGATCGATTTCTCACTTC 58.888 41.667 0.00 0.00 0.00 3.01
552 802 7.824289 ACATGGATCGATTTCTCACTTCTTTTA 59.176 33.333 0.00 0.00 0.00 1.52
561 811 6.935240 TTCTCACTTCTTTTAGAGATGGGA 57.065 37.500 0.00 0.00 39.05 4.37
562 812 7.502060 TTCTCACTTCTTTTAGAGATGGGAT 57.498 36.000 0.00 0.00 40.15 3.85
563 813 7.118496 TCTCACTTCTTTTAGAGATGGGATC 57.882 40.000 0.00 0.00 40.15 3.36
564 814 6.669591 TCTCACTTCTTTTAGAGATGGGATCA 59.330 38.462 0.00 0.00 40.15 2.92
571 821 9.439461 TTCTTTTAGAGATGGGATCAATCTCTA 57.561 33.333 27.53 27.53 46.49 2.43
583 833 2.366590 TCAATCTCTAGCCGCATCACAT 59.633 45.455 0.00 0.00 0.00 3.21
599 849 1.061131 CACATGATTCGACTCGGCAAC 59.939 52.381 0.00 0.00 0.00 4.17
905 1191 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
929 1215 1.649271 CCCCTGCCCAGCTAAATCCT 61.649 60.000 0.00 0.00 0.00 3.24
930 1216 0.179006 CCCTGCCCAGCTAAATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
931 1217 0.533755 CCTGCCCAGCTAAATCCTCG 60.534 60.000 0.00 0.00 0.00 4.63
932 1218 0.179000 CTGCCCAGCTAAATCCTCGT 59.821 55.000 0.00 0.00 0.00 4.18
933 1219 0.178068 TGCCCAGCTAAATCCTCGTC 59.822 55.000 0.00 0.00 0.00 4.20
934 1220 0.876342 GCCCAGCTAAATCCTCGTCG 60.876 60.000 0.00 0.00 0.00 5.12
935 1221 0.460311 CCCAGCTAAATCCTCGTCGT 59.540 55.000 0.00 0.00 0.00 4.34
936 1222 1.536284 CCCAGCTAAATCCTCGTCGTC 60.536 57.143 0.00 0.00 0.00 4.20
937 1223 1.405821 CCAGCTAAATCCTCGTCGTCT 59.594 52.381 0.00 0.00 0.00 4.18
938 1224 2.541999 CCAGCTAAATCCTCGTCGTCTC 60.542 54.545 0.00 0.00 0.00 3.36
939 1225 2.356382 CAGCTAAATCCTCGTCGTCTCT 59.644 50.000 0.00 0.00 0.00 3.10
940 1226 2.614983 AGCTAAATCCTCGTCGTCTCTC 59.385 50.000 0.00 0.00 0.00 3.20
1175 6449 2.648059 CATTTCCAGCGAATCCTTCCT 58.352 47.619 0.00 0.00 0.00 3.36
1176 6450 2.879103 TTTCCAGCGAATCCTTCCTT 57.121 45.000 0.00 0.00 0.00 3.36
1177 6451 2.403252 TTCCAGCGAATCCTTCCTTC 57.597 50.000 0.00 0.00 0.00 3.46
1178 6452 0.541863 TCCAGCGAATCCTTCCTTCC 59.458 55.000 0.00 0.00 0.00 3.46
1179 6453 0.253044 CCAGCGAATCCTTCCTTCCA 59.747 55.000 0.00 0.00 0.00 3.53
1181 6455 0.108138 AGCGAATCCTTCCTTCCACG 60.108 55.000 0.00 0.00 0.00 4.94
1182 6456 0.108329 GCGAATCCTTCCTTCCACGA 60.108 55.000 0.00 0.00 0.00 4.35
1183 6457 1.641577 CGAATCCTTCCTTCCACGAC 58.358 55.000 0.00 0.00 0.00 4.34
1184 6458 1.739371 CGAATCCTTCCTTCCACGACC 60.739 57.143 0.00 0.00 0.00 4.79
1185 6459 1.555533 GAATCCTTCCTTCCACGACCT 59.444 52.381 0.00 0.00 0.00 3.85
1186 6460 2.544844 ATCCTTCCTTCCACGACCTA 57.455 50.000 0.00 0.00 0.00 3.08
1187 6461 1.848652 TCCTTCCTTCCACGACCTAG 58.151 55.000 0.00 0.00 0.00 3.02
1201 6475 3.081804 CGACCTAGTTGGATTTTGCCTT 58.918 45.455 0.00 0.00 39.71 4.35
1202 6476 3.119849 CGACCTAGTTGGATTTTGCCTTG 60.120 47.826 0.00 0.00 39.71 3.61
1207 6501 2.562738 AGTTGGATTTTGCCTTGGTAGC 59.437 45.455 0.00 0.00 0.00 3.58
1404 6714 4.865776 TCTTCCGCAACAAATAGTTTTGG 58.134 39.130 3.76 0.00 45.34 3.28
1412 6722 6.045955 GCAACAAATAGTTTTGGGTTCTGAA 58.954 36.000 3.76 0.00 45.34 3.02
1425 6735 3.596214 GGTTCTGAAACTAAGCATCCGA 58.404 45.455 0.00 0.00 35.61 4.55
1430 6740 3.734463 TGAAACTAAGCATCCGAACACA 58.266 40.909 0.00 0.00 0.00 3.72
1508 6825 1.064134 GATTGGTTTCGGCCGATGC 59.936 57.895 31.56 23.45 32.92 3.91
1509 6826 1.653094 GATTGGTTTCGGCCGATGCA 61.653 55.000 31.56 12.17 40.13 3.96
1510 6827 1.037030 ATTGGTTTCGGCCGATGCAT 61.037 50.000 31.56 13.93 40.13 3.96
1511 6828 1.932011 TTGGTTTCGGCCGATGCATG 61.932 55.000 31.56 0.00 40.13 4.06
1665 6997 7.918536 ACATGCACATTTGGCAATTAATTTA 57.081 28.000 0.00 0.00 45.60 1.40
1799 7174 1.256812 TGCCTCGACACATCTCTCAA 58.743 50.000 0.00 0.00 0.00 3.02
2113 7491 7.192852 AGATACCAGAATTTGATCTGTCAGT 57.807 36.000 0.00 0.00 44.32 3.41
2203 7581 6.527023 GCAAACTCAATGAGTCAATTCATCAG 59.473 38.462 17.02 0.00 42.59 2.90
2262 7640 6.831353 TGCTTTATTTAATAGCTGCCTTACCA 59.169 34.615 0.00 0.00 35.93 3.25
2279 7665 6.533730 CCTTACCATGATTAGGTAGCATTCA 58.466 40.000 0.00 0.00 42.22 2.57
2289 7675 7.392953 TGATTAGGTAGCATTCAACAATTGTGA 59.607 33.333 12.82 9.07 0.00 3.58
2290 7676 7.701539 TTAGGTAGCATTCAACAATTGTGAT 57.298 32.000 12.82 4.28 0.00 3.06
2419 7807 5.003160 TGTATGGAAAGTCAACACCTCATG 58.997 41.667 0.00 0.00 0.00 3.07
2443 7831 5.803020 ACAGGTGAAATTTCTATTCGAGC 57.197 39.130 18.64 7.29 0.00 5.03
2522 7910 0.804364 TGCAAGCATAAGAGTTGGCG 59.196 50.000 0.00 0.00 0.00 5.69
2534 7929 0.684805 AGTTGGCGGAAAACACCCAA 60.685 50.000 0.00 0.00 35.14 4.12
2627 8022 3.103738 CAGCTTTGCTAATTCGCATGAC 58.896 45.455 5.38 0.00 40.04 3.06
2645 8040 5.459768 CATGACATTCCACGATTCAAAACA 58.540 37.500 0.00 0.00 0.00 2.83
2656 8051 7.434897 TCCACGATTCAAAACATTCAGAAAAAG 59.565 33.333 0.00 0.00 0.00 2.27
2669 8064 4.067896 TCAGAAAAAGACAGGATCACAGC 58.932 43.478 0.00 0.00 0.00 4.40
2731 8126 5.665812 AGGGTATGGTTCTATCTTAGCACAA 59.334 40.000 0.00 0.00 0.00 3.33
2830 8225 7.946655 TTTCTGCATATCTTACATAGTTCCG 57.053 36.000 0.00 0.00 0.00 4.30
2937 8332 3.149196 TCCTTTCTGATGGCAGTGTTTC 58.851 45.455 0.00 0.00 42.84 2.78
3282 8677 5.175859 TCACGAAGACAAAGAGTTGAAAGT 58.824 37.500 0.00 0.00 38.20 2.66
3495 8893 0.830444 TACCACTCACTCCGCTGGTT 60.830 55.000 0.00 0.00 38.08 3.67
3661 9064 3.261580 TGGTCACATATCAACTTGCGAG 58.738 45.455 0.00 0.00 0.00 5.03
3671 9074 7.280876 ACATATCAACTTGCGAGAACACATATT 59.719 33.333 8.31 0.00 0.00 1.28
3710 9113 5.010617 GTCCATTCCCTACATTTGTGTTGTT 59.989 40.000 0.00 0.00 0.00 2.83
3839 9246 2.346803 TGAAGCTTGTGAACGCTATCC 58.653 47.619 2.10 0.00 34.96 2.59
3843 9250 0.924090 CTTGTGAACGCTATCCGCTC 59.076 55.000 0.00 0.00 41.76 5.03
3844 9251 0.800683 TTGTGAACGCTATCCGCTCG 60.801 55.000 0.00 0.00 41.76 5.03
3845 9252 1.226603 GTGAACGCTATCCGCTCGT 60.227 57.895 0.00 0.00 41.76 4.18
3846 9253 1.063649 TGAACGCTATCCGCTCGTC 59.936 57.895 0.00 0.00 41.76 4.20
3847 9254 2.004489 GAACGCTATCCGCTCGTCG 61.004 63.158 0.00 0.00 41.76 5.12
3888 9311 1.127766 CGCGTGAAAATCGTTCCATCA 59.872 47.619 0.00 0.00 0.00 3.07
3893 9316 4.319477 CGTGAAAATCGTTCCATCACTTGT 60.319 41.667 0.00 0.00 38.54 3.16
3894 9317 5.519722 GTGAAAATCGTTCCATCACTTGTT 58.480 37.500 0.00 0.00 37.87 2.83
3899 9322 2.158740 TCGTTCCATCACTTGTTGGGAA 60.159 45.455 6.51 0.00 35.97 3.97
3904 9327 3.164268 CCATCACTTGTTGGGAATTGGA 58.836 45.455 0.00 0.00 32.58 3.53
3915 9338 1.373570 GGAATTGGAGCTCCTGAACG 58.626 55.000 32.28 0.00 36.82 3.95
3916 9339 1.373570 GAATTGGAGCTCCTGAACGG 58.626 55.000 32.28 0.00 36.82 4.44
3917 9340 0.984230 AATTGGAGCTCCTGAACGGA 59.016 50.000 32.28 8.55 40.30 4.69
3918 9341 0.984230 ATTGGAGCTCCTGAACGGAA 59.016 50.000 32.28 17.24 42.53 4.30
3919 9342 0.321671 TTGGAGCTCCTGAACGGAAG 59.678 55.000 32.28 0.00 42.53 3.46
3920 9343 1.448717 GGAGCTCCTGAACGGAAGC 60.449 63.158 26.25 0.00 42.53 3.86
3921 9344 1.594310 GAGCTCCTGAACGGAAGCT 59.406 57.895 0.87 0.00 44.01 3.74
3922 9345 0.459411 GAGCTCCTGAACGGAAGCTC 60.459 60.000 0.87 6.16 46.19 4.09
3923 9346 1.188219 AGCTCCTGAACGGAAGCTCA 61.188 55.000 0.00 0.00 42.53 4.26
3946 9369 0.389025 GCTAGAGCTCTCTTCCCTGC 59.611 60.000 22.17 10.35 40.93 4.85
3947 9370 1.774110 CTAGAGCTCTCTTCCCTGCA 58.226 55.000 22.17 0.00 40.93 4.41
3948 9371 2.318908 CTAGAGCTCTCTTCCCTGCAT 58.681 52.381 22.17 0.00 40.93 3.96
3974 9397 5.323371 TCTGTTGTTTGTTCCTTTCTTGG 57.677 39.130 0.00 0.00 0.00 3.61
4081 9505 9.130312 GTAGAAGCAGAATCATATTTACTACCG 57.870 37.037 0.00 0.00 0.00 4.02
4084 9508 7.948278 AGCAGAATCATATTTACTACCGTTC 57.052 36.000 0.00 0.00 0.00 3.95
4089 9513 8.701895 AGAATCATATTTACTACCGTTCCAAGA 58.298 33.333 0.00 0.00 0.00 3.02
4196 9625 1.932511 CAGCGAGATGAAAGCTTCCTC 59.067 52.381 0.00 3.89 39.48 3.71
4208 9637 7.129109 TGAAAGCTTCCTCGTTAGTATTTTG 57.871 36.000 0.00 0.00 0.00 2.44
4227 9661 0.447011 GCAGTGTTGCTCTCAGATGC 59.553 55.000 0.00 0.00 46.95 3.91
4299 9736 9.303116 AGATAGTAGCACAATTATACTGCTAGT 57.697 33.333 12.91 12.91 45.18 2.57
4302 9739 8.466617 AGTAGCACAATTATACTGCTAGTACT 57.533 34.615 0.00 0.00 42.70 2.73
4303 9740 8.569641 AGTAGCACAATTATACTGCTAGTACTC 58.430 37.037 0.00 0.00 42.70 2.59
4304 9741 6.750148 AGCACAATTATACTGCTAGTACTCC 58.250 40.000 0.00 0.00 39.52 3.85
4305 9742 5.927115 GCACAATTATACTGCTAGTACTCCC 59.073 44.000 0.00 0.00 32.84 4.30
4306 9743 6.239345 GCACAATTATACTGCTAGTACTCCCT 60.239 42.308 0.00 0.00 32.84 4.20
4307 9744 7.371936 CACAATTATACTGCTAGTACTCCCTC 58.628 42.308 0.00 0.00 32.84 4.30
4308 9745 6.494146 ACAATTATACTGCTAGTACTCCCTCC 59.506 42.308 0.00 0.00 32.84 4.30
4309 9746 2.634815 TACTGCTAGTACTCCCTCCG 57.365 55.000 0.00 0.00 0.00 4.63
4310 9747 0.106619 ACTGCTAGTACTCCCTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
4311 9748 0.106619 CTGCTAGTACTCCCTCCGGT 60.107 60.000 0.00 0.00 0.00 5.28
4312 9749 0.106819 TGCTAGTACTCCCTCCGGTC 60.107 60.000 0.00 0.00 0.00 4.79
4313 9750 0.106819 GCTAGTACTCCCTCCGGTCA 60.107 60.000 0.00 0.00 0.00 4.02
4314 9751 1.479021 GCTAGTACTCCCTCCGGTCAT 60.479 57.143 0.00 0.00 0.00 3.06
4315 9752 2.946785 CTAGTACTCCCTCCGGTCATT 58.053 52.381 0.00 0.00 0.00 2.57
4316 9753 2.249309 AGTACTCCCTCCGGTCATTT 57.751 50.000 0.00 0.00 0.00 2.32
4317 9754 2.547990 AGTACTCCCTCCGGTCATTTT 58.452 47.619 0.00 0.00 0.00 1.82
4318 9755 2.910977 AGTACTCCCTCCGGTCATTTTT 59.089 45.455 0.00 0.00 0.00 1.94
4319 9756 4.098894 AGTACTCCCTCCGGTCATTTTTA 58.901 43.478 0.00 0.00 0.00 1.52
4320 9757 3.345508 ACTCCCTCCGGTCATTTTTAC 57.654 47.619 0.00 0.00 0.00 2.01
4321 9758 2.910977 ACTCCCTCCGGTCATTTTTACT 59.089 45.455 0.00 0.00 0.00 2.24
4322 9759 3.055312 ACTCCCTCCGGTCATTTTTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4323 9760 3.178865 TCCCTCCGGTCATTTTTACTCT 58.821 45.455 0.00 0.00 0.00 3.24
4324 9761 3.055385 TCCCTCCGGTCATTTTTACTCTG 60.055 47.826 0.00 0.00 0.00 3.35
4325 9762 3.270877 CCTCCGGTCATTTTTACTCTGG 58.729 50.000 0.00 0.00 0.00 3.86
4326 9763 3.055385 CCTCCGGTCATTTTTACTCTGGA 60.055 47.826 0.00 0.00 0.00 3.86
4327 9764 4.384208 CCTCCGGTCATTTTTACTCTGGAT 60.384 45.833 0.00 0.00 0.00 3.41
4328 9765 5.163343 CCTCCGGTCATTTTTACTCTGGATA 60.163 44.000 0.00 0.00 0.00 2.59
4329 9766 6.464465 CCTCCGGTCATTTTTACTCTGGATAT 60.464 42.308 0.00 0.00 0.00 1.63
4330 9767 6.895782 TCCGGTCATTTTTACTCTGGATATT 58.104 36.000 0.00 0.00 0.00 1.28
4331 9768 8.025270 TCCGGTCATTTTTACTCTGGATATTA 57.975 34.615 0.00 0.00 0.00 0.98
4332 9769 8.148351 TCCGGTCATTTTTACTCTGGATATTAG 58.852 37.037 0.00 0.00 0.00 1.73
4333 9770 7.387948 CCGGTCATTTTTACTCTGGATATTAGG 59.612 40.741 0.00 0.00 0.00 2.69
4334 9771 7.931948 CGGTCATTTTTACTCTGGATATTAGGT 59.068 37.037 0.00 0.00 0.00 3.08
4335 9772 9.628500 GGTCATTTTTACTCTGGATATTAGGTT 57.372 33.333 0.00 0.00 0.00 3.50
4344 9781 8.567285 ACTCTGGATATTAGGTTTGTTTGAAG 57.433 34.615 0.00 0.00 0.00 3.02
4345 9782 8.164070 ACTCTGGATATTAGGTTTGTTTGAAGT 58.836 33.333 0.00 0.00 0.00 3.01
4346 9783 8.561738 TCTGGATATTAGGTTTGTTTGAAGTC 57.438 34.615 0.00 0.00 0.00 3.01
4347 9784 8.160765 TCTGGATATTAGGTTTGTTTGAAGTCA 58.839 33.333 0.00 0.00 0.00 3.41
4348 9785 8.335532 TGGATATTAGGTTTGTTTGAAGTCAG 57.664 34.615 0.00 0.00 0.00 3.51
4349 9786 7.942341 TGGATATTAGGTTTGTTTGAAGTCAGT 59.058 33.333 0.00 0.00 0.00 3.41
4350 9787 8.451748 GGATATTAGGTTTGTTTGAAGTCAGTC 58.548 37.037 0.00 0.00 0.00 3.51
4351 9788 9.220767 GATATTAGGTTTGTTTGAAGTCAGTCT 57.779 33.333 0.00 0.00 0.00 3.24
4352 9789 6.920569 TTAGGTTTGTTTGAAGTCAGTCTC 57.079 37.500 0.00 0.00 0.00 3.36
4353 9790 4.843728 AGGTTTGTTTGAAGTCAGTCTCA 58.156 39.130 0.00 0.00 0.00 3.27
4354 9791 5.440610 AGGTTTGTTTGAAGTCAGTCTCAT 58.559 37.500 0.00 0.00 0.00 2.90
4355 9792 5.529060 AGGTTTGTTTGAAGTCAGTCTCATC 59.471 40.000 0.00 0.00 0.00 2.92
4356 9793 5.278022 GGTTTGTTTGAAGTCAGTCTCATCC 60.278 44.000 0.00 0.00 0.00 3.51
4357 9794 4.687901 TGTTTGAAGTCAGTCTCATCCA 57.312 40.909 0.00 0.00 0.00 3.41
4358 9795 5.034852 TGTTTGAAGTCAGTCTCATCCAA 57.965 39.130 0.00 0.00 0.00 3.53
4359 9796 4.816385 TGTTTGAAGTCAGTCTCATCCAAC 59.184 41.667 0.00 0.00 0.00 3.77
4360 9797 4.963318 TTGAAGTCAGTCTCATCCAACT 57.037 40.909 0.00 0.00 0.00 3.16
4361 9798 4.963318 TGAAGTCAGTCTCATCCAACTT 57.037 40.909 0.00 0.00 0.00 2.66
4362 9799 5.296151 TGAAGTCAGTCTCATCCAACTTT 57.704 39.130 0.00 0.00 0.00 2.66
4363 9800 5.059161 TGAAGTCAGTCTCATCCAACTTTG 58.941 41.667 0.00 0.00 0.00 2.77
4364 9801 4.963318 AGTCAGTCTCATCCAACTTTGA 57.037 40.909 0.00 0.00 0.00 2.69
4365 9802 4.636249 AGTCAGTCTCATCCAACTTTGAC 58.364 43.478 0.00 0.00 0.00 3.18
4366 9803 3.748568 GTCAGTCTCATCCAACTTTGACC 59.251 47.826 0.00 0.00 0.00 4.02
4367 9804 3.390967 TCAGTCTCATCCAACTTTGACCA 59.609 43.478 0.00 0.00 0.00 4.02
4368 9805 4.136796 CAGTCTCATCCAACTTTGACCAA 58.863 43.478 0.00 0.00 0.00 3.67
4369 9806 4.214971 CAGTCTCATCCAACTTTGACCAAG 59.785 45.833 0.00 0.00 38.64 3.61
4410 9847 6.707440 AGACATTTTCACATAACAACACCA 57.293 33.333 0.00 0.00 0.00 4.17
4411 9848 7.106439 AGACATTTTCACATAACAACACCAA 57.894 32.000 0.00 0.00 0.00 3.67
4412 9849 7.725251 AGACATTTTCACATAACAACACCAAT 58.275 30.769 0.00 0.00 0.00 3.16
4413 9850 8.855110 AGACATTTTCACATAACAACACCAATA 58.145 29.630 0.00 0.00 0.00 1.90
4414 9851 9.638239 GACATTTTCACATAACAACACCAATAT 57.362 29.630 0.00 0.00 0.00 1.28
4415 9852 9.638239 ACATTTTCACATAACAACACCAATATC 57.362 29.630 0.00 0.00 0.00 1.63
4416 9853 9.636879 CATTTTCACATAACAACACCAATATCA 57.363 29.630 0.00 0.00 0.00 2.15
4421 9858 9.898152 TCACATAACAACACCAATATCATTAGA 57.102 29.630 0.00 0.00 0.00 2.10
4428 9865 9.857656 ACAACACCAATATCATTAGATTCATCT 57.142 29.630 0.00 0.00 40.86 2.90
4522 9959 5.169836 ACTTAGCAAAGTTTGACTTTCGG 57.830 39.130 19.82 8.79 44.47 4.30
4523 9960 4.638865 ACTTAGCAAAGTTTGACTTTCGGT 59.361 37.500 19.82 9.27 44.47 4.69
4524 9961 5.818857 ACTTAGCAAAGTTTGACTTTCGGTA 59.181 36.000 19.82 6.86 44.47 4.02
4525 9962 6.316890 ACTTAGCAAAGTTTGACTTTCGGTAA 59.683 34.615 19.82 16.80 44.47 2.85
4526 9963 5.570234 AGCAAAGTTTGACTTTCGGTAAA 57.430 34.783 19.82 0.00 44.47 2.01
4527 9964 6.144078 AGCAAAGTTTGACTTTCGGTAAAT 57.856 33.333 19.82 0.00 44.47 1.40
4528 9965 6.206498 AGCAAAGTTTGACTTTCGGTAAATC 58.794 36.000 19.82 0.00 44.47 2.17
4529 9966 5.401376 GCAAAGTTTGACTTTCGGTAAATCC 59.599 40.000 19.82 0.00 44.47 3.01
4530 9967 6.500041 CAAAGTTTGACTTTCGGTAAATCCA 58.500 36.000 10.19 0.00 44.47 3.41
4531 9968 6.702716 AAGTTTGACTTTCGGTAAATCCAA 57.297 33.333 0.00 0.00 34.11 3.53
4532 9969 6.894339 AGTTTGACTTTCGGTAAATCCAAT 57.106 33.333 0.00 0.00 35.57 3.16
4533 9970 6.677913 AGTTTGACTTTCGGTAAATCCAATG 58.322 36.000 0.00 0.00 35.57 2.82
4534 9971 6.264518 AGTTTGACTTTCGGTAAATCCAATGT 59.735 34.615 0.00 0.00 35.57 2.71
4535 9972 5.621197 TGACTTTCGGTAAATCCAATGTG 57.379 39.130 0.00 0.00 35.57 3.21
4536 9973 4.083003 TGACTTTCGGTAAATCCAATGTGC 60.083 41.667 0.00 0.00 35.57 4.57
4537 9974 3.823873 ACTTTCGGTAAATCCAATGTGCA 59.176 39.130 0.00 0.00 35.57 4.57
4538 9975 4.082787 ACTTTCGGTAAATCCAATGTGCAG 60.083 41.667 0.00 0.00 35.57 4.41
4539 9976 3.342377 TCGGTAAATCCAATGTGCAGA 57.658 42.857 0.00 0.00 35.57 4.26
4540 9977 3.270027 TCGGTAAATCCAATGTGCAGAG 58.730 45.455 0.00 0.00 35.57 3.35
4541 9978 3.009723 CGGTAAATCCAATGTGCAGAGT 58.990 45.455 0.00 0.00 35.57 3.24
4542 9979 4.081365 TCGGTAAATCCAATGTGCAGAGTA 60.081 41.667 0.00 0.00 35.57 2.59
4543 9980 4.634004 CGGTAAATCCAATGTGCAGAGTAA 59.366 41.667 0.00 0.00 35.57 2.24
4544 9981 5.123186 CGGTAAATCCAATGTGCAGAGTAAA 59.877 40.000 0.00 0.00 35.57 2.01
4545 9982 6.348950 CGGTAAATCCAATGTGCAGAGTAAAA 60.349 38.462 0.00 0.00 35.57 1.52
4546 9983 7.375053 GGTAAATCCAATGTGCAGAGTAAAAA 58.625 34.615 0.00 0.00 35.97 1.94
4547 9984 7.542130 GGTAAATCCAATGTGCAGAGTAAAAAG 59.458 37.037 0.00 0.00 35.97 2.27
4548 9985 5.649782 ATCCAATGTGCAGAGTAAAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
4549 9986 4.724399 TCCAATGTGCAGAGTAAAAAGGA 58.276 39.130 0.00 0.00 0.00 3.36
4550 9987 4.518970 TCCAATGTGCAGAGTAAAAAGGAC 59.481 41.667 0.00 0.00 0.00 3.85
4608 10045 4.971939 TGATGAATTGATGATTAGGCCGA 58.028 39.130 0.00 0.00 0.00 5.54
4609 10046 4.999311 TGATGAATTGATGATTAGGCCGAG 59.001 41.667 0.00 0.00 0.00 4.63
4610 10047 4.422073 TGAATTGATGATTAGGCCGAGT 57.578 40.909 0.00 0.00 0.00 4.18
4611 10048 4.129380 TGAATTGATGATTAGGCCGAGTG 58.871 43.478 0.00 0.00 0.00 3.51
4633 10080 1.312815 AGCAAAGCAGAGTTGGTCAC 58.687 50.000 0.00 0.00 31.22 3.67
4685 10132 0.737219 GAATGTTAGCAGGCAGGCAG 59.263 55.000 0.00 0.00 35.83 4.85
4686 10133 0.682209 AATGTTAGCAGGCAGGCAGG 60.682 55.000 0.00 0.00 35.83 4.85
4694 10141 3.618750 GGCAGGCAGGCAAGCAAA 61.619 61.111 12.49 0.00 43.51 3.68
4695 10142 2.356673 GCAGGCAGGCAAGCAAAC 60.357 61.111 6.56 0.00 35.83 2.93
4696 10143 3.131155 CAGGCAGGCAAGCAAACA 58.869 55.556 0.00 0.00 35.83 2.83
4697 10144 1.006571 CAGGCAGGCAAGCAAACAG 60.007 57.895 0.00 0.00 35.83 3.16
4698 10145 1.152694 AGGCAGGCAAGCAAACAGA 60.153 52.632 0.00 0.00 35.83 3.41
4699 10146 0.541296 AGGCAGGCAAGCAAACAGAT 60.541 50.000 0.00 0.00 35.83 2.90
4700 10147 0.108945 GGCAGGCAAGCAAACAGATC 60.109 55.000 4.37 0.00 35.83 2.75
4701 10148 0.108945 GCAGGCAAGCAAACAGATCC 60.109 55.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.998106 GAGGCAGTTTTATTATAAGAGGATGTA 57.002 33.333 0.00 0.00 0.00 2.29
13 14 7.657761 CGAGGCAGTTTTATTATAAGAGGATGT 59.342 37.037 0.00 0.00 0.00 3.06
24 25 6.228258 ACTTTCTCACGAGGCAGTTTTATTA 58.772 36.000 0.00 0.00 0.00 0.98
124 125 0.325933 TCTCTTGAGTGGCCACCATG 59.674 55.000 32.29 26.55 35.28 3.66
126 127 1.483595 CCTCTCTTGAGTGGCCACCA 61.484 60.000 32.29 25.09 38.61 4.17
127 128 1.298014 CCTCTCTTGAGTGGCCACC 59.702 63.158 32.29 22.81 38.61 4.61
128 129 1.298014 CCCTCTCTTGAGTGGCCAC 59.702 63.158 29.22 29.22 38.61 5.01
129 130 2.596851 GCCCTCTCTTGAGTGGCCA 61.597 63.158 0.00 0.00 44.06 5.36
130 131 2.270527 GCCCTCTCTTGAGTGGCC 59.729 66.667 16.99 0.00 44.06 5.36
131 132 1.376553 GTGCCCTCTCTTGAGTGGC 60.377 63.158 19.34 19.34 46.98 5.01
132 133 1.079543 CGTGCCCTCTCTTGAGTGG 60.080 63.158 10.76 10.76 38.61 4.00
133 134 1.079543 CCGTGCCCTCTCTTGAGTG 60.080 63.158 0.00 0.00 38.61 3.51
134 135 2.286523 CCCGTGCCCTCTCTTGAGT 61.287 63.158 0.00 0.00 38.61 3.41
135 136 1.333636 ATCCCGTGCCCTCTCTTGAG 61.334 60.000 0.00 0.00 39.92 3.02
136 137 1.306141 ATCCCGTGCCCTCTCTTGA 60.306 57.895 0.00 0.00 0.00 3.02
137 138 1.153289 CATCCCGTGCCCTCTCTTG 60.153 63.158 0.00 0.00 0.00 3.02
147 148 0.588252 GGAATCATTCGCATCCCGTG 59.412 55.000 0.00 0.00 38.35 4.94
148 149 0.469917 AGGAATCATTCGCATCCCGT 59.530 50.000 0.00 0.00 38.35 5.28
149 150 1.151668 GAGGAATCATTCGCATCCCG 58.848 55.000 0.00 0.00 38.61 5.14
150 151 1.528129 GGAGGAATCATTCGCATCCC 58.472 55.000 4.31 0.00 32.15 3.85
151 152 1.151668 CGGAGGAATCATTCGCATCC 58.848 55.000 5.28 5.28 0.00 3.51
169 170 1.076332 CTTCTTTTACCACTCGGCCG 58.924 55.000 22.12 22.12 34.57 6.13
170 171 2.074576 GACTTCTTTTACCACTCGGCC 58.925 52.381 0.00 0.00 34.57 6.13
174 175 6.931840 ACATCAAGAGACTTCTTTTACCACTC 59.068 38.462 0.00 0.00 41.71 3.51
181 182 3.748568 GGCGACATCAAGAGACTTCTTTT 59.251 43.478 0.00 0.00 41.71 2.27
183 184 2.672478 CGGCGACATCAAGAGACTTCTT 60.672 50.000 0.00 0.00 44.45 2.52
186 187 0.108615 CCGGCGACATCAAGAGACTT 60.109 55.000 9.30 0.00 0.00 3.01
188 189 1.519455 CCCGGCGACATCAAGAGAC 60.519 63.158 9.30 0.00 0.00 3.36
189 190 0.681887 TACCCGGCGACATCAAGAGA 60.682 55.000 9.30 0.00 0.00 3.10
190 191 0.174845 TTACCCGGCGACATCAAGAG 59.825 55.000 9.30 0.00 0.00 2.85
191 192 0.609151 TTTACCCGGCGACATCAAGA 59.391 50.000 9.30 0.00 0.00 3.02
192 193 1.444836 TTTTACCCGGCGACATCAAG 58.555 50.000 9.30 0.00 0.00 3.02
193 194 2.011222 GATTTTACCCGGCGACATCAA 58.989 47.619 9.30 0.00 0.00 2.57
195 196 1.329599 GTGATTTTACCCGGCGACATC 59.670 52.381 9.30 0.00 0.00 3.06
196 197 1.065709 AGTGATTTTACCCGGCGACAT 60.066 47.619 9.30 0.00 0.00 3.06
197 198 0.322322 AGTGATTTTACCCGGCGACA 59.678 50.000 9.30 0.00 0.00 4.35
198 199 1.004595 GAGTGATTTTACCCGGCGAC 58.995 55.000 9.30 0.00 0.00 5.19
199 200 0.108041 GGAGTGATTTTACCCGGCGA 60.108 55.000 9.30 0.00 0.00 5.54
203 204 1.093496 GGCCGGAGTGATTTTACCCG 61.093 60.000 5.05 0.00 39.85 5.28
204 205 1.093496 CGGCCGGAGTGATTTTACCC 61.093 60.000 20.10 0.00 0.00 3.69
208 209 1.921869 ATCCCGGCCGGAGTGATTTT 61.922 55.000 45.44 16.36 46.60 1.82
209 210 2.375345 ATCCCGGCCGGAGTGATTT 61.375 57.895 45.44 17.12 46.60 2.17
210 211 2.768344 ATCCCGGCCGGAGTGATT 60.768 61.111 45.44 19.21 46.60 2.57
211 212 3.550431 CATCCCGGCCGGAGTGAT 61.550 66.667 45.44 33.42 46.60 3.06
220 221 3.564027 CTTCGTTCGCATCCCGGC 61.564 66.667 0.00 0.00 37.59 6.13
223 224 2.125106 AGGCTTCGTTCGCATCCC 60.125 61.111 0.00 0.00 0.00 3.85
224 225 1.148759 GAGAGGCTTCGTTCGCATCC 61.149 60.000 0.00 0.00 38.84 3.51
225 226 0.458543 TGAGAGGCTTCGTTCGCATC 60.459 55.000 0.00 0.00 38.37 3.91
226 227 0.037326 TTGAGAGGCTTCGTTCGCAT 60.037 50.000 0.00 0.00 0.00 4.73
227 228 0.667487 CTTGAGAGGCTTCGTTCGCA 60.667 55.000 0.00 0.00 0.00 5.10
228 229 0.388649 TCTTGAGAGGCTTCGTTCGC 60.389 55.000 0.00 0.00 0.00 4.70
229 230 1.068194 ACTCTTGAGAGGCTTCGTTCG 60.068 52.381 12.32 0.00 46.13 3.95
230 231 2.734276 ACTCTTGAGAGGCTTCGTTC 57.266 50.000 12.32 0.00 46.13 3.95
231 232 2.094442 GCTACTCTTGAGAGGCTTCGTT 60.094 50.000 12.32 0.00 46.13 3.85
232 233 1.474879 GCTACTCTTGAGAGGCTTCGT 59.525 52.381 12.32 0.00 46.13 3.85
235 236 2.027653 GGTTGCTACTCTTGAGAGGCTT 60.028 50.000 12.32 0.00 46.13 4.35
236 237 1.552792 GGTTGCTACTCTTGAGAGGCT 59.447 52.381 12.32 0.00 46.13 4.58
238 239 3.594134 CAAGGTTGCTACTCTTGAGAGG 58.406 50.000 17.81 0.00 46.13 3.69
266 267 1.827344 GCCCTCTCTTTTCCCATTTGG 59.173 52.381 0.00 0.00 0.00 3.28
267 268 2.528564 TGCCCTCTCTTTTCCCATTTG 58.471 47.619 0.00 0.00 0.00 2.32
269 270 2.625087 CCATGCCCTCTCTTTTCCCATT 60.625 50.000 0.00 0.00 0.00 3.16
270 271 1.063417 CCATGCCCTCTCTTTTCCCAT 60.063 52.381 0.00 0.00 0.00 4.00
272 273 0.396278 CCCATGCCCTCTCTTTTCCC 60.396 60.000 0.00 0.00 0.00 3.97
274 275 0.323725 TGCCCATGCCCTCTCTTTTC 60.324 55.000 0.00 0.00 36.33 2.29
275 276 0.324091 CTGCCCATGCCCTCTCTTTT 60.324 55.000 0.00 0.00 36.33 2.27
277 278 3.004951 CTGCCCATGCCCTCTCTT 58.995 61.111 0.00 0.00 36.33 2.85
278 279 3.806667 GCTGCCCATGCCCTCTCT 61.807 66.667 0.00 0.00 36.33 3.10
279 280 3.432445 ATGCTGCCCATGCCCTCTC 62.432 63.158 0.00 0.00 36.33 3.20
281 282 2.910994 GATGCTGCCCATGCCCTC 60.911 66.667 0.00 0.00 36.33 4.30
283 284 2.523412 ATGATGCTGCCCATGCCC 60.523 61.111 0.00 0.00 36.33 5.36
284 285 2.571216 GGATGATGCTGCCCATGCC 61.571 63.158 8.95 6.96 36.33 4.40
285 286 1.830847 TGGATGATGCTGCCCATGC 60.831 57.895 13.73 13.73 33.29 4.06
286 287 1.461091 GGTGGATGATGCTGCCCATG 61.461 60.000 8.95 0.00 33.29 3.66
287 288 1.152610 GGTGGATGATGCTGCCCAT 60.153 57.895 0.00 0.29 36.70 4.00
288 289 2.276409 GGTGGATGATGCTGCCCA 59.724 61.111 0.00 0.00 0.00 5.36
374 457 2.719354 GTTTCGGGGTGTGTGCAC 59.281 61.111 10.75 10.75 44.53 4.57
394 635 4.276926 GCTTTAGACCCATTGGATCACATC 59.723 45.833 3.62 0.00 34.81 3.06
400 641 1.843851 TCGGCTTTAGACCCATTGGAT 59.156 47.619 3.62 0.00 34.81 3.41
406 647 2.432444 CACATTTCGGCTTTAGACCCA 58.568 47.619 0.00 0.00 0.00 4.51
409 650 2.544480 GCCACATTTCGGCTTTAGAC 57.456 50.000 0.00 0.00 46.56 2.59
419 660 0.458669 CTGATGGGCTGCCACATTTC 59.541 55.000 22.05 11.46 0.00 2.17
423 664 3.654143 AGCTGATGGGCTGCCACA 61.654 61.111 22.05 16.09 41.43 4.17
453 694 1.673337 GCCATGCTGTCTCTGCACA 60.673 57.895 3.69 0.00 40.77 4.57
474 715 1.574526 ATTTGCTGGCCCTAGCTCCA 61.575 55.000 15.52 0.00 44.01 3.86
496 737 1.120530 GAATAGCAACCTCCCTCCGA 58.879 55.000 0.00 0.00 0.00 4.55
521 762 5.052481 GTGAGAAATCGATCCATGTCATCA 58.948 41.667 0.00 0.00 0.00 3.07
524 765 4.743057 AGTGAGAAATCGATCCATGTCA 57.257 40.909 0.00 0.00 0.00 3.58
536 786 7.922382 TCCCATCTCTAAAAGAAGTGAGAAAT 58.078 34.615 0.00 0.00 38.77 2.17
547 797 7.818930 GCTAGAGATTGATCCCATCTCTAAAAG 59.181 40.741 26.71 21.85 46.90 2.27
561 811 2.366590 TGTGATGCGGCTAGAGATTGAT 59.633 45.455 0.00 0.00 0.00 2.57
562 812 1.756538 TGTGATGCGGCTAGAGATTGA 59.243 47.619 0.00 0.00 0.00 2.57
563 813 2.229675 TGTGATGCGGCTAGAGATTG 57.770 50.000 0.00 0.00 0.00 2.67
564 814 2.366590 TCATGTGATGCGGCTAGAGATT 59.633 45.455 0.00 0.00 0.00 2.40
571 821 2.314256 CGAATCATGTGATGCGGCT 58.686 52.632 14.25 0.00 46.99 5.52
583 833 1.582461 TCGTTGCCGAGTCGAATCA 59.418 52.632 15.64 6.06 38.40 2.57
657 917 0.107017 GATTAGGCCCAGCTCAAGCA 60.107 55.000 0.00 0.00 45.16 3.91
886 1169 2.612251 CCTCCTCCTCCTCCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
929 1215 0.665670 AACGACGAGAGAGACGACGA 60.666 55.000 16.55 0.00 46.85 4.20
931 1217 0.246834 CGAACGACGAGAGAGACGAC 60.247 60.000 0.00 0.00 45.77 4.34
932 1218 0.665670 ACGAACGACGAGAGAGACGA 60.666 55.000 0.00 0.00 45.77 4.20
933 1219 0.246834 GACGAACGACGAGAGAGACG 60.247 60.000 0.00 0.00 45.77 4.18
934 1220 1.059549 GAGACGAACGACGAGAGAGAC 59.940 57.143 0.00 0.00 45.77 3.36
935 1221 1.348276 GAGACGAACGACGAGAGAGA 58.652 55.000 0.00 0.00 45.77 3.10
936 1222 0.370958 GGAGACGAACGACGAGAGAG 59.629 60.000 0.00 0.00 45.77 3.20
937 1223 1.018226 GGGAGACGAACGACGAGAGA 61.018 60.000 0.00 0.00 45.77 3.10
938 1224 1.424635 GGGAGACGAACGACGAGAG 59.575 63.158 0.00 0.00 45.77 3.20
939 1225 2.037136 GGGGAGACGAACGACGAGA 61.037 63.158 0.00 0.00 45.77 4.04
940 1226 2.484203 GGGGAGACGAACGACGAG 59.516 66.667 0.00 0.00 45.77 4.18
1175 6449 4.069304 CAAAATCCAACTAGGTCGTGGAA 58.931 43.478 9.82 0.00 39.02 3.53
1176 6450 3.670625 CAAAATCCAACTAGGTCGTGGA 58.329 45.455 8.59 8.59 39.02 4.02
1177 6451 2.161609 GCAAAATCCAACTAGGTCGTGG 59.838 50.000 0.00 0.00 39.02 4.94
1178 6452 2.161609 GGCAAAATCCAACTAGGTCGTG 59.838 50.000 0.00 0.00 39.02 4.35
1179 6453 2.039879 AGGCAAAATCCAACTAGGTCGT 59.960 45.455 0.00 0.00 39.02 4.34
1181 6455 3.193479 CCAAGGCAAAATCCAACTAGGTC 59.807 47.826 0.00 0.00 39.02 3.85
1182 6456 3.165071 CCAAGGCAAAATCCAACTAGGT 58.835 45.455 0.00 0.00 39.02 3.08
1183 6457 3.165071 ACCAAGGCAAAATCCAACTAGG 58.835 45.455 0.00 0.00 39.47 3.02
1184 6458 4.142381 GCTACCAAGGCAAAATCCAACTAG 60.142 45.833 0.00 0.00 0.00 2.57
1185 6459 3.761752 GCTACCAAGGCAAAATCCAACTA 59.238 43.478 0.00 0.00 0.00 2.24
1186 6460 2.562738 GCTACCAAGGCAAAATCCAACT 59.437 45.455 0.00 0.00 0.00 3.16
1187 6461 2.562738 AGCTACCAAGGCAAAATCCAAC 59.437 45.455 0.00 0.00 0.00 3.77
1207 6501 1.539929 GCATCCACAGTGGCTAGCTAG 60.540 57.143 15.64 16.84 37.47 3.42
1216 6510 1.321474 AACCACAAGCATCCACAGTG 58.679 50.000 0.00 0.00 0.00 3.66
1285 6579 4.265556 GGACACGAAAGATAACAGTGATCG 59.734 45.833 0.00 0.00 36.71 3.69
1404 6714 3.596214 TCGGATGCTTAGTTTCAGAACC 58.404 45.455 0.00 0.00 36.39 3.62
1412 6722 3.678056 TCTGTGTTCGGATGCTTAGTT 57.322 42.857 0.00 0.00 0.00 2.24
1425 6735 2.233922 CCGTCCACCTAGAATCTGTGTT 59.766 50.000 0.00 0.00 0.00 3.32
1430 6740 2.100989 GTGTCCGTCCACCTAGAATCT 58.899 52.381 0.00 0.00 0.00 2.40
1508 6825 4.780815 TGCTTATCCTACTGGAAACCATG 58.219 43.478 0.00 0.00 46.80 3.66
1509 6826 5.132648 TCATGCTTATCCTACTGGAAACCAT 59.867 40.000 0.00 0.00 46.80 3.55
1510 6827 4.473196 TCATGCTTATCCTACTGGAAACCA 59.527 41.667 0.00 0.00 46.80 3.67
1511 6828 5.036117 TCATGCTTATCCTACTGGAAACC 57.964 43.478 0.00 0.00 46.80 3.27
1665 6997 2.249309 ACCCTACCGAGACCAAGAAT 57.751 50.000 0.00 0.00 0.00 2.40
1799 7174 2.501723 CCCAGCCAGTACAGATTACAGT 59.498 50.000 0.00 0.00 0.00 3.55
1902 7280 6.145338 ACCATAGTTACTGACGTATCTTGG 57.855 41.667 0.00 0.00 34.33 3.61
1992 7370 1.039856 GCAAGCACCCTGAGGAAAAA 58.960 50.000 0.00 0.00 36.73 1.94
2113 7491 5.363868 ACAGCTAGAGGTGCTCAATTACATA 59.636 40.000 8.61 0.00 46.62 2.29
2203 7581 6.819397 ACCTATAACTGTTTTCTTTCTGCC 57.181 37.500 0.00 0.00 0.00 4.85
2248 7626 4.599241 ACCTAATCATGGTAAGGCAGCTAT 59.401 41.667 7.74 0.00 35.80 2.97
2262 7640 8.192774 CACAATTGTTGAATGCTACCTAATCAT 58.807 33.333 8.77 0.00 0.00 2.45
2313 7700 8.607459 CGCTCATATTTCTGTTGAAGAGTTAAT 58.393 33.333 0.00 0.00 35.91 1.40
2314 7701 7.817478 TCGCTCATATTTCTGTTGAAGAGTTAA 59.183 33.333 0.00 0.00 35.91 2.01
2419 7807 6.535508 AGCTCGAATAGAAATTTCACCTGTAC 59.464 38.462 19.99 3.70 0.00 2.90
2443 7831 8.186821 GGAAGGATAAGAATGTTCAAATGACAG 58.813 37.037 0.00 0.00 0.00 3.51
2522 7910 4.350368 AAATGGATGTTGGGTGTTTTCC 57.650 40.909 0.00 0.00 0.00 3.13
2534 7929 8.413229 GGTACACAAGCAATAATAAATGGATGT 58.587 33.333 0.00 0.00 0.00 3.06
2627 8022 6.380995 TCTGAATGTTTTGAATCGTGGAATG 58.619 36.000 0.00 0.00 0.00 2.67
2645 8040 5.182760 GCTGTGATCCTGTCTTTTTCTGAAT 59.817 40.000 0.00 0.00 0.00 2.57
2656 8051 2.462456 TGTTGAGCTGTGATCCTGTC 57.538 50.000 0.00 0.00 0.00 3.51
2669 8064 3.202906 TCCTTGTCGAGGTTTTGTTGAG 58.797 45.455 6.00 0.00 46.39 3.02
2731 8126 3.019564 GCAGAGCAAAACATGGACCTAT 58.980 45.455 0.00 0.00 0.00 2.57
2830 8225 8.926710 CCGTGTAAATAAATCATATCCTCAGAC 58.073 37.037 0.00 0.00 0.00 3.51
2937 8332 1.800586 ACACTGTCATTAAGCAGCACG 59.199 47.619 0.00 0.00 36.26 5.34
2995 8390 2.124612 TGGATGGCCAGCATCACG 60.125 61.111 24.75 0.00 39.92 4.35
3282 8677 0.729478 CGCTTTCGTCTTCGCTCTCA 60.729 55.000 0.00 0.00 36.96 3.27
3495 8893 3.002102 GCACGGAGTAAATCGGGTAAAA 58.998 45.455 0.00 0.00 41.61 1.52
3588 8991 4.676986 GGTTCAACTTTGAAACCACCTCAC 60.677 45.833 8.34 0.00 46.52 3.51
3661 9064 7.766278 ACATGTCCTCTGTTAGAATATGTGTTC 59.234 37.037 0.00 0.00 0.00 3.18
3849 9256 2.944954 TCCAGGGAGGTCGGGAGA 60.945 66.667 0.00 0.00 39.02 3.71
3850 9257 2.443016 CTCCAGGGAGGTCGGGAG 60.443 72.222 7.48 0.00 40.82 4.30
3851 9258 4.779733 GCTCCAGGGAGGTCGGGA 62.780 72.222 16.70 0.00 42.19 5.14
3864 9271 0.518559 GAACGATTTTCACGCGCTCC 60.519 55.000 5.73 0.00 0.00 4.70
3888 9311 2.519013 GAGCTCCAATTCCCAACAAGT 58.481 47.619 0.87 0.00 0.00 3.16
3893 9316 1.371467 TCAGGAGCTCCAATTCCCAA 58.629 50.000 33.90 7.35 38.89 4.12
3894 9317 1.004745 GTTCAGGAGCTCCAATTCCCA 59.995 52.381 33.90 8.03 38.89 4.37
3899 9322 2.683916 TCCGTTCAGGAGCTCCAAT 58.316 52.632 33.90 12.52 45.98 3.16
3944 9367 3.382855 GAACAAACAACAGATGCATGCA 58.617 40.909 25.04 25.04 0.00 3.96
3945 9368 2.733026 GGAACAAACAACAGATGCATGC 59.267 45.455 11.82 11.82 0.00 4.06
3946 9369 4.247267 AGGAACAAACAACAGATGCATG 57.753 40.909 2.46 0.00 0.00 4.06
3947 9370 4.942761 AAGGAACAAACAACAGATGCAT 57.057 36.364 0.00 0.00 0.00 3.96
3948 9371 4.402155 AGAAAGGAACAAACAACAGATGCA 59.598 37.500 0.00 0.00 0.00 3.96
3974 9397 8.705048 ATCTCTAGTGAAAGAAAACGAATACC 57.295 34.615 0.00 0.00 0.00 2.73
4064 9487 8.882415 TCTTGGAACGGTAGTAAATATGATTC 57.118 34.615 0.00 0.00 0.00 2.52
4081 9505 7.329226 CCATCATTTGTTGTTACATCTTGGAAC 59.671 37.037 0.00 0.00 41.53 3.62
4084 9508 6.690530 ACCATCATTTGTTGTTACATCTTGG 58.309 36.000 0.00 0.00 33.44 3.61
4126 9550 6.033966 CCTTTTATTTCCCCTTTCGAAATCG 58.966 40.000 11.70 4.65 39.86 3.34
4227 9661 8.151141 TGTACACTACACTAGGATAAGAATCG 57.849 38.462 0.00 0.00 32.89 3.34
4305 9742 4.202245 TCCAGAGTAAAAATGACCGGAG 57.798 45.455 9.46 0.00 0.00 4.63
4306 9743 4.837093 ATCCAGAGTAAAAATGACCGGA 57.163 40.909 9.46 0.00 0.00 5.14
4307 9744 7.387948 CCTAATATCCAGAGTAAAAATGACCGG 59.612 40.741 0.00 0.00 0.00 5.28
4308 9745 7.931948 ACCTAATATCCAGAGTAAAAATGACCG 59.068 37.037 0.00 0.00 0.00 4.79
4309 9746 9.628500 AACCTAATATCCAGAGTAAAAATGACC 57.372 33.333 0.00 0.00 0.00 4.02
4318 9755 9.667107 CTTCAAACAAACCTAATATCCAGAGTA 57.333 33.333 0.00 0.00 0.00 2.59
4319 9756 8.164070 ACTTCAAACAAACCTAATATCCAGAGT 58.836 33.333 0.00 0.00 0.00 3.24
4320 9757 8.567285 ACTTCAAACAAACCTAATATCCAGAG 57.433 34.615 0.00 0.00 0.00 3.35
4321 9758 8.160765 TGACTTCAAACAAACCTAATATCCAGA 58.839 33.333 0.00 0.00 0.00 3.86
4322 9759 8.335532 TGACTTCAAACAAACCTAATATCCAG 57.664 34.615 0.00 0.00 0.00 3.86
4323 9760 7.942341 ACTGACTTCAAACAAACCTAATATCCA 59.058 33.333 0.00 0.00 0.00 3.41
4324 9761 8.336801 ACTGACTTCAAACAAACCTAATATCC 57.663 34.615 0.00 0.00 0.00 2.59
4325 9762 9.220767 AGACTGACTTCAAACAAACCTAATATC 57.779 33.333 0.00 0.00 0.00 1.63
4326 9763 9.220767 GAGACTGACTTCAAACAAACCTAATAT 57.779 33.333 0.00 0.00 0.00 1.28
4327 9764 8.208224 TGAGACTGACTTCAAACAAACCTAATA 58.792 33.333 0.00 0.00 0.00 0.98
4328 9765 7.054124 TGAGACTGACTTCAAACAAACCTAAT 58.946 34.615 0.00 0.00 0.00 1.73
4329 9766 6.411376 TGAGACTGACTTCAAACAAACCTAA 58.589 36.000 0.00 0.00 0.00 2.69
4330 9767 5.984725 TGAGACTGACTTCAAACAAACCTA 58.015 37.500 0.00 0.00 0.00 3.08
4331 9768 4.843728 TGAGACTGACTTCAAACAAACCT 58.156 39.130 0.00 0.00 0.00 3.50
4332 9769 5.278022 GGATGAGACTGACTTCAAACAAACC 60.278 44.000 0.00 0.00 0.00 3.27
4333 9770 5.296780 TGGATGAGACTGACTTCAAACAAAC 59.703 40.000 0.00 0.00 0.00 2.93
4334 9771 5.436175 TGGATGAGACTGACTTCAAACAAA 58.564 37.500 0.00 0.00 0.00 2.83
4335 9772 5.034852 TGGATGAGACTGACTTCAAACAA 57.965 39.130 0.00 0.00 0.00 2.83
4336 9773 4.687901 TGGATGAGACTGACTTCAAACA 57.312 40.909 0.00 0.00 0.00 2.83
4337 9774 5.059833 AGTTGGATGAGACTGACTTCAAAC 58.940 41.667 0.00 0.00 0.00 2.93
4338 9775 5.296151 AGTTGGATGAGACTGACTTCAAA 57.704 39.130 0.00 0.00 0.00 2.69
4339 9776 4.963318 AGTTGGATGAGACTGACTTCAA 57.037 40.909 0.00 0.00 0.00 2.69
4340 9777 4.963318 AAGTTGGATGAGACTGACTTCA 57.037 40.909 0.00 0.00 0.00 3.02
4341 9778 5.178438 GTCAAAGTTGGATGAGACTGACTTC 59.822 44.000 0.00 0.00 0.00 3.01
4342 9779 5.059833 GTCAAAGTTGGATGAGACTGACTT 58.940 41.667 0.00 0.00 0.00 3.01
4343 9780 4.503991 GGTCAAAGTTGGATGAGACTGACT 60.504 45.833 0.00 0.00 0.00 3.41
4344 9781 3.748568 GGTCAAAGTTGGATGAGACTGAC 59.251 47.826 0.00 0.00 0.00 3.51
4345 9782 3.390967 TGGTCAAAGTTGGATGAGACTGA 59.609 43.478 0.00 0.00 0.00 3.41
4346 9783 3.743521 TGGTCAAAGTTGGATGAGACTG 58.256 45.455 0.00 0.00 0.00 3.51
4347 9784 4.392940 CTTGGTCAAAGTTGGATGAGACT 58.607 43.478 0.00 0.00 0.00 3.24
4348 9785 4.756084 CTTGGTCAAAGTTGGATGAGAC 57.244 45.455 0.00 0.00 0.00 3.36
4384 9821 9.508642 TGGTGTTGTTATGTGAAAATGTCTATA 57.491 29.630 0.00 0.00 0.00 1.31
4385 9822 8.402798 TGGTGTTGTTATGTGAAAATGTCTAT 57.597 30.769 0.00 0.00 0.00 1.98
4386 9823 7.809546 TGGTGTTGTTATGTGAAAATGTCTA 57.190 32.000 0.00 0.00 0.00 2.59
4387 9824 6.707440 TGGTGTTGTTATGTGAAAATGTCT 57.293 33.333 0.00 0.00 0.00 3.41
4388 9825 7.945033 ATTGGTGTTGTTATGTGAAAATGTC 57.055 32.000 0.00 0.00 0.00 3.06
4389 9826 9.638239 GATATTGGTGTTGTTATGTGAAAATGT 57.362 29.630 0.00 0.00 0.00 2.71
4390 9827 9.636879 TGATATTGGTGTTGTTATGTGAAAATG 57.363 29.630 0.00 0.00 0.00 2.32
4395 9832 9.898152 TCTAATGATATTGGTGTTGTTATGTGA 57.102 29.630 0.00 0.00 0.00 3.58
4402 9839 9.857656 AGATGAATCTAATGATATTGGTGTTGT 57.142 29.630 0.00 0.00 34.85 3.32
4504 9941 9.027205 TGGATTTACCGAAAGTCAAACTTTGCT 62.027 37.037 9.65 0.00 43.15 3.91
4505 9942 6.953310 TGGATTTACCGAAAGTCAAACTTTGC 60.953 38.462 9.65 2.06 43.15 3.68
4506 9943 6.500041 TGGATTTACCGAAAGTCAAACTTTG 58.500 36.000 9.65 0.00 43.15 2.77
4507 9944 6.702716 TGGATTTACCGAAAGTCAAACTTT 57.297 33.333 4.82 4.82 42.68 2.66
4508 9945 6.702716 TTGGATTTACCGAAAGTCAAACTT 57.297 33.333 0.00 0.00 40.04 2.66
4509 9946 6.264518 ACATTGGATTTACCGAAAGTCAAACT 59.735 34.615 0.00 0.00 42.61 2.66
4510 9947 6.362283 CACATTGGATTTACCGAAAGTCAAAC 59.638 38.462 0.00 0.00 42.61 2.93
4511 9948 6.442952 CACATTGGATTTACCGAAAGTCAAA 58.557 36.000 0.00 0.00 42.61 2.69
4512 9949 5.563867 GCACATTGGATTTACCGAAAGTCAA 60.564 40.000 0.00 0.00 42.61 3.18
4513 9950 4.083003 GCACATTGGATTTACCGAAAGTCA 60.083 41.667 0.00 0.00 42.61 3.41
4514 9951 4.083003 TGCACATTGGATTTACCGAAAGTC 60.083 41.667 0.00 0.00 42.61 3.01
4515 9952 3.823873 TGCACATTGGATTTACCGAAAGT 59.176 39.130 0.00 0.00 42.61 2.66
4516 9953 4.155826 TCTGCACATTGGATTTACCGAAAG 59.844 41.667 0.00 0.00 42.61 2.62
4517 9954 4.075682 TCTGCACATTGGATTTACCGAAA 58.924 39.130 0.00 0.00 42.61 3.46
4518 9955 3.680490 TCTGCACATTGGATTTACCGAA 58.320 40.909 0.00 0.00 42.61 4.30
4519 9956 3.270027 CTCTGCACATTGGATTTACCGA 58.730 45.455 0.00 0.00 42.61 4.69
4520 9957 3.009723 ACTCTGCACATTGGATTTACCG 58.990 45.455 0.00 0.00 42.61 4.02
4521 9958 6.509418 TTTACTCTGCACATTGGATTTACC 57.491 37.500 0.00 0.00 39.54 2.85
4522 9959 7.542130 CCTTTTTACTCTGCACATTGGATTTAC 59.458 37.037 0.00 0.00 0.00 2.01
4523 9960 7.450014 TCCTTTTTACTCTGCACATTGGATTTA 59.550 33.333 0.00 0.00 0.00 1.40
4524 9961 6.267471 TCCTTTTTACTCTGCACATTGGATTT 59.733 34.615 0.00 0.00 0.00 2.17
4525 9962 5.774690 TCCTTTTTACTCTGCACATTGGATT 59.225 36.000 0.00 0.00 0.00 3.01
4526 9963 5.183904 GTCCTTTTTACTCTGCACATTGGAT 59.816 40.000 0.00 0.00 0.00 3.41
4527 9964 4.518970 GTCCTTTTTACTCTGCACATTGGA 59.481 41.667 0.00 0.00 0.00 3.53
4528 9965 4.613622 CGTCCTTTTTACTCTGCACATTGG 60.614 45.833 0.00 0.00 0.00 3.16
4529 9966 4.024048 ACGTCCTTTTTACTCTGCACATTG 60.024 41.667 0.00 0.00 0.00 2.82
4530 9967 4.024048 CACGTCCTTTTTACTCTGCACATT 60.024 41.667 0.00 0.00 0.00 2.71
4531 9968 3.498397 CACGTCCTTTTTACTCTGCACAT 59.502 43.478 0.00 0.00 0.00 3.21
4532 9969 2.869801 CACGTCCTTTTTACTCTGCACA 59.130 45.455 0.00 0.00 0.00 4.57
4533 9970 3.128349 TCACGTCCTTTTTACTCTGCAC 58.872 45.455 0.00 0.00 0.00 4.57
4534 9971 3.462483 TCACGTCCTTTTTACTCTGCA 57.538 42.857 0.00 0.00 0.00 4.41
4535 9972 3.424962 GCATCACGTCCTTTTTACTCTGC 60.425 47.826 0.00 0.00 0.00 4.26
4536 9973 3.181530 CGCATCACGTCCTTTTTACTCTG 60.182 47.826 0.00 0.00 36.87 3.35
4537 9974 2.993899 CGCATCACGTCCTTTTTACTCT 59.006 45.455 0.00 0.00 36.87 3.24
4538 9975 2.991190 TCGCATCACGTCCTTTTTACTC 59.009 45.455 0.00 0.00 44.19 2.59
4539 9976 3.034721 TCGCATCACGTCCTTTTTACT 57.965 42.857 0.00 0.00 44.19 2.24
4540 9977 3.124636 ACATCGCATCACGTCCTTTTTAC 59.875 43.478 0.00 0.00 44.19 2.01
4541 9978 3.124466 CACATCGCATCACGTCCTTTTTA 59.876 43.478 0.00 0.00 44.19 1.52
4542 9979 2.095768 CACATCGCATCACGTCCTTTTT 60.096 45.455 0.00 0.00 44.19 1.94
4543 9980 1.464608 CACATCGCATCACGTCCTTTT 59.535 47.619 0.00 0.00 44.19 2.27
4544 9981 1.078709 CACATCGCATCACGTCCTTT 58.921 50.000 0.00 0.00 44.19 3.11
4545 9982 0.246360 TCACATCGCATCACGTCCTT 59.754 50.000 0.00 0.00 44.19 3.36
4546 9983 0.461548 ATCACATCGCATCACGTCCT 59.538 50.000 0.00 0.00 44.19 3.85
4547 9984 1.004610 CAATCACATCGCATCACGTCC 60.005 52.381 0.00 0.00 44.19 4.79
4548 9985 1.926510 TCAATCACATCGCATCACGTC 59.073 47.619 0.00 0.00 44.19 4.34
4549 9986 1.660607 GTCAATCACATCGCATCACGT 59.339 47.619 0.00 0.00 44.19 4.49
4550 9987 1.660104 TGTCAATCACATCGCATCACG 59.340 47.619 0.00 0.00 45.62 4.35
4608 10045 2.360165 CCAACTCTGCTTTGCTTTCACT 59.640 45.455 0.00 0.00 0.00 3.41
4609 10046 2.099756 ACCAACTCTGCTTTGCTTTCAC 59.900 45.455 0.00 0.00 0.00 3.18
4610 10047 2.358898 GACCAACTCTGCTTTGCTTTCA 59.641 45.455 0.00 0.00 0.00 2.69
4611 10048 2.358898 TGACCAACTCTGCTTTGCTTTC 59.641 45.455 0.00 0.00 0.00 2.62
4633 10080 2.033801 GGATCTTCGTTGGCCATGATTG 59.966 50.000 6.09 4.60 0.00 2.67
4685 10132 0.244721 GTGGGATCTGTTTGCTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
4686 10133 1.200948 GAGTGGGATCTGTTTGCTTGC 59.799 52.381 0.00 0.00 0.00 4.01
4689 10136 1.701847 AGTGAGTGGGATCTGTTTGCT 59.298 47.619 0.00 0.00 0.00 3.91
4690 10137 2.079925 GAGTGAGTGGGATCTGTTTGC 58.920 52.381 0.00 0.00 0.00 3.68
4691 10138 3.692257 AGAGTGAGTGGGATCTGTTTG 57.308 47.619 0.00 0.00 0.00 2.93
4692 10139 3.244700 CCAAGAGTGAGTGGGATCTGTTT 60.245 47.826 0.00 0.00 0.00 2.83
4693 10140 2.304180 CCAAGAGTGAGTGGGATCTGTT 59.696 50.000 0.00 0.00 0.00 3.16
4694 10141 1.905215 CCAAGAGTGAGTGGGATCTGT 59.095 52.381 0.00 0.00 0.00 3.41
4695 10142 1.905215 ACCAAGAGTGAGTGGGATCTG 59.095 52.381 0.00 0.00 39.39 2.90
4696 10143 2.334006 ACCAAGAGTGAGTGGGATCT 57.666 50.000 0.00 0.00 39.39 2.75
4736 10183 1.613836 AGCAGCACCCAGAAAGAAAG 58.386 50.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.