Multiple sequence alignment - TraesCS2D01G586600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G586600 chr2D 100.000 1610 0 0 628 2237 644875948 644874339 0.000000e+00 2974.0
1 TraesCS2D01G586600 chr2D 100.000 342 0 0 1 342 644876575 644876234 1.130000e-177 632.0
2 TraesCS2D01G586600 chr2D 80.942 446 47 27 1805 2235 644862552 644862974 3.580000e-83 318.0
3 TraesCS2D01G586600 chr2A 96.693 635 21 0 662 1296 770248931 770248297 0.000000e+00 1057.0
4 TraesCS2D01G586600 chr2A 94.215 363 17 4 1879 2237 770212796 770212434 3.250000e-153 551.0
5 TraesCS2D01G586600 chr2A 95.441 329 12 1 1428 1753 770248297 770247969 2.550000e-144 521.0
6 TraesCS2D01G586600 chr2A 94.091 220 11 2 1 220 770249216 770248999 1.280000e-87 333.0
7 TraesCS2D01G586600 chr2A 88.189 127 14 1 1761 1886 770247933 770247807 1.380000e-32 150.0
8 TraesCS2D01G586600 chr2A 86.400 125 8 5 222 342 709195352 709195471 6.480000e-26 128.0
9 TraesCS2D01G586600 chr7A 79.849 397 57 18 1765 2141 20184008 20184401 3.660000e-68 268.0
10 TraesCS2D01G586600 chr7A 79.397 398 58 19 1765 2141 20192067 20192461 2.200000e-65 259.0
11 TraesCS2D01G586600 chr1D 79.795 391 57 16 1769 2141 80875424 80875038 4.740000e-67 265.0
12 TraesCS2D01G586600 chr1D 77.953 127 18 7 1796 1916 470547925 470547803 1.110000e-08 71.3
13 TraesCS2D01G586600 chr3D 79.389 393 57 17 1769 2141 592963454 592963066 2.850000e-64 255.0
14 TraesCS2D01G586600 chr5A 78.880 393 62 17 1766 2140 120753900 120754289 1.720000e-61 246.0
15 TraesCS2D01G586600 chr1A 78.517 391 64 15 1769 2141 465433097 465433485 2.870000e-59 239.0
16 TraesCS2D01G586600 chr1A 78.535 396 56 22 1769 2144 569392570 569392184 1.340000e-57 233.0
17 TraesCS2D01G586600 chr6D 82.353 136 21 2 1769 1901 468926685 468926820 5.050000e-22 115.0
18 TraesCS2D01G586600 chr3A 81.416 113 18 1 1026 1138 657458814 657458705 3.060000e-14 89.8
19 TraesCS2D01G586600 chr4D 76.786 168 26 9 1863 2017 487376521 487376688 5.120000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G586600 chr2D 644874339 644876575 2236 True 1803.00 2974 100.0000 1 2237 2 chr2D.!!$R1 2236
1 TraesCS2D01G586600 chr2A 770247807 770249216 1409 True 515.25 1057 93.6035 1 1886 4 chr2A.!!$R2 1885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 651 0.033504 AATACATGTAGCTCCGCCGG 59.966 55.0 11.91 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2141 0.034616 GCTCCAGGCAGCTCGATATT 59.965 55.0 0.0 0.0 41.35 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.377193 AGAGTCTCGCCATATAGGGAGT 59.623 50.000 7.83 0.00 36.58 3.85
134 135 4.881273 TCATGTAGATTTTCCCATTGGACG 59.119 41.667 3.62 0.00 41.57 4.79
135 136 3.616219 TGTAGATTTTCCCATTGGACGG 58.384 45.455 3.62 0.00 41.57 4.79
147 148 3.128589 CCATTGGACGGTACTTGGAATTG 59.871 47.826 7.00 0.00 0.00 2.32
155 156 5.805728 ACGGTACTTGGAATTGAAATCTCT 58.194 37.500 0.00 0.00 0.00 3.10
156 157 6.238648 ACGGTACTTGGAATTGAAATCTCTT 58.761 36.000 0.00 0.00 0.00 2.85
221 222 9.849166 TTTTAGCAAATTACTGCACCTATTAAC 57.151 29.630 4.99 0.00 45.18 2.01
223 224 7.088589 AGCAAATTACTGCACCTATTAACAG 57.911 36.000 4.99 0.00 45.18 3.16
225 226 6.747280 GCAAATTACTGCACCTATTAACAGTG 59.253 38.462 4.83 0.00 43.00 3.66
226 227 7.250569 CAAATTACTGCACCTATTAACAGTGG 58.749 38.462 4.83 0.00 43.00 4.00
227 228 2.711542 ACTGCACCTATTAACAGTGGC 58.288 47.619 0.00 0.00 41.63 5.01
229 230 1.014352 GCACCTATTAACAGTGGCGG 58.986 55.000 0.00 0.00 32.05 6.13
231 232 2.550978 CACCTATTAACAGTGGCGGAG 58.449 52.381 0.00 0.00 0.00 4.63
247 248 2.898705 CGGAGCTAGACAAAGAATGCT 58.101 47.619 0.00 0.00 0.00 3.79
248 249 2.606725 CGGAGCTAGACAAAGAATGCTG 59.393 50.000 0.00 0.00 0.00 4.41
250 251 3.369892 GGAGCTAGACAAAGAATGCTGGA 60.370 47.826 0.00 0.00 0.00 3.86
253 254 2.503895 AGACAAAGAATGCTGGAGGG 57.496 50.000 0.00 0.00 0.00 4.30
255 256 0.613012 ACAAAGAATGCTGGAGGGGC 60.613 55.000 0.00 0.00 0.00 5.80
257 258 1.852157 AAAGAATGCTGGAGGGGCGA 61.852 55.000 0.00 0.00 0.00 5.54
258 259 1.852157 AAGAATGCTGGAGGGGCGAA 61.852 55.000 0.00 0.00 0.00 4.70
259 260 1.378514 GAATGCTGGAGGGGCGAAA 60.379 57.895 0.00 0.00 0.00 3.46
260 261 1.379044 AATGCTGGAGGGGCGAAAG 60.379 57.895 0.00 0.00 0.00 2.62
262 263 3.717294 GCTGGAGGGGCGAAAGGA 61.717 66.667 0.00 0.00 0.00 3.36
264 265 1.378762 CTGGAGGGGCGAAAGGAAA 59.621 57.895 0.00 0.00 0.00 3.13
265 266 0.251165 CTGGAGGGGCGAAAGGAAAA 60.251 55.000 0.00 0.00 0.00 2.29
266 267 0.407918 TGGAGGGGCGAAAGGAAAAT 59.592 50.000 0.00 0.00 0.00 1.82
268 269 2.022195 GGAGGGGCGAAAGGAAAATAC 58.978 52.381 0.00 0.00 0.00 1.89
269 270 2.619590 GGAGGGGCGAAAGGAAAATACA 60.620 50.000 0.00 0.00 0.00 2.29
271 272 2.823747 AGGGGCGAAAGGAAAATACAAC 59.176 45.455 0.00 0.00 0.00 3.32
275 276 4.321675 GGGCGAAAGGAAAATACAACACAT 60.322 41.667 0.00 0.00 0.00 3.21
276 277 5.227152 GGCGAAAGGAAAATACAACACATT 58.773 37.500 0.00 0.00 0.00 2.71
277 278 5.344933 GGCGAAAGGAAAATACAACACATTC 59.655 40.000 0.00 0.00 0.00 2.67
278 279 6.149633 GCGAAAGGAAAATACAACACATTCT 58.850 36.000 0.00 0.00 0.00 2.40
279 280 6.088085 GCGAAAGGAAAATACAACACATTCTG 59.912 38.462 0.00 0.00 0.00 3.02
281 282 7.535258 CGAAAGGAAAATACAACACATTCTGAG 59.465 37.037 0.00 0.00 0.00 3.35
282 283 6.824305 AGGAAAATACAACACATTCTGAGG 57.176 37.500 0.00 0.00 0.00 3.86
283 284 5.711976 AGGAAAATACAACACATTCTGAGGG 59.288 40.000 0.00 0.00 0.00 4.30
284 285 5.105756 GGAAAATACAACACATTCTGAGGGG 60.106 44.000 0.00 0.00 0.00 4.79
285 286 3.652057 ATACAACACATTCTGAGGGGG 57.348 47.619 0.00 0.00 0.00 5.40
286 287 0.251341 ACAACACATTCTGAGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
287 288 0.967380 CAACACATTCTGAGGGGGCC 60.967 60.000 0.00 0.00 0.00 5.80
288 289 1.434513 AACACATTCTGAGGGGGCCA 61.435 55.000 4.39 0.00 0.00 5.36
289 290 1.383799 CACATTCTGAGGGGGCCAA 59.616 57.895 4.39 0.00 0.00 4.52
290 291 0.251742 CACATTCTGAGGGGGCCAAA 60.252 55.000 4.39 0.00 0.00 3.28
291 292 0.040204 ACATTCTGAGGGGGCCAAAG 59.960 55.000 4.39 0.00 0.00 2.77
292 293 0.332632 CATTCTGAGGGGGCCAAAGA 59.667 55.000 4.39 0.00 0.00 2.52
293 294 0.332972 ATTCTGAGGGGGCCAAAGAC 59.667 55.000 4.39 0.00 0.00 3.01
294 295 0.772124 TTCTGAGGGGGCCAAAGACT 60.772 55.000 4.39 0.00 0.00 3.24
295 296 0.118346 TCTGAGGGGGCCAAAGACTA 59.882 55.000 4.39 0.00 0.00 2.59
296 297 0.253327 CTGAGGGGGCCAAAGACTAC 59.747 60.000 4.39 0.00 0.00 2.73
297 298 0.474854 TGAGGGGGCCAAAGACTACA 60.475 55.000 4.39 0.00 0.00 2.74
298 299 0.919710 GAGGGGGCCAAAGACTACAT 59.080 55.000 4.39 0.00 0.00 2.29
299 300 1.285078 GAGGGGGCCAAAGACTACATT 59.715 52.381 4.39 0.00 0.00 2.71
300 301 1.716503 AGGGGGCCAAAGACTACATTT 59.283 47.619 4.39 0.00 0.00 2.32
301 302 2.111792 AGGGGGCCAAAGACTACATTTT 59.888 45.455 4.39 0.00 0.00 1.82
302 303 2.903784 GGGGGCCAAAGACTACATTTTT 59.096 45.455 4.39 0.00 0.00 1.94
303 304 3.056107 GGGGGCCAAAGACTACATTTTTC 60.056 47.826 4.39 0.00 0.00 2.29
304 305 3.832490 GGGGCCAAAGACTACATTTTTCT 59.168 43.478 4.39 0.00 0.00 2.52
305 306 5.014202 GGGGCCAAAGACTACATTTTTCTA 58.986 41.667 4.39 0.00 0.00 2.10
306 307 5.479027 GGGGCCAAAGACTACATTTTTCTAA 59.521 40.000 4.39 0.00 0.00 2.10
307 308 6.154534 GGGGCCAAAGACTACATTTTTCTAAT 59.845 38.462 4.39 0.00 0.00 1.73
308 309 7.310423 GGGGCCAAAGACTACATTTTTCTAATT 60.310 37.037 4.39 0.00 0.00 1.40
309 310 8.745590 GGGCCAAAGACTACATTTTTCTAATTA 58.254 33.333 4.39 0.00 0.00 1.40
316 317 9.740710 AGACTACATTTTTCTAATTAAGCACCT 57.259 29.630 0.00 0.00 0.00 4.00
317 318 9.989869 GACTACATTTTTCTAATTAAGCACCTC 57.010 33.333 0.00 0.00 0.00 3.85
318 319 8.957466 ACTACATTTTTCTAATTAAGCACCTCC 58.043 33.333 0.00 0.00 0.00 4.30
319 320 9.178758 CTACATTTTTCTAATTAAGCACCTCCT 57.821 33.333 0.00 0.00 0.00 3.69
321 322 9.528489 ACATTTTTCTAATTAAGCACCTCCTAA 57.472 29.630 0.00 0.00 0.00 2.69
325 326 8.927675 TTTCTAATTAAGCACCTCCTAAAACA 57.072 30.769 0.00 0.00 0.00 2.83
326 327 8.927675 TTCTAATTAAGCACCTCCTAAAACAA 57.072 30.769 0.00 0.00 0.00 2.83
327 328 9.528489 TTCTAATTAAGCACCTCCTAAAACAAT 57.472 29.630 0.00 0.00 0.00 2.71
328 329 9.528489 TCTAATTAAGCACCTCCTAAAACAATT 57.472 29.630 0.00 0.00 0.00 2.32
331 332 7.833285 TTAAGCACCTCCTAAAACAATTTCT 57.167 32.000 0.00 0.00 0.00 2.52
332 333 6.731292 AAGCACCTCCTAAAACAATTTCTT 57.269 33.333 0.00 0.00 0.00 2.52
333 334 6.332735 AGCACCTCCTAAAACAATTTCTTC 57.667 37.500 0.00 0.00 0.00 2.87
334 335 5.833131 AGCACCTCCTAAAACAATTTCTTCA 59.167 36.000 0.00 0.00 0.00 3.02
335 336 6.015940 AGCACCTCCTAAAACAATTTCTTCAG 60.016 38.462 0.00 0.00 0.00 3.02
336 337 6.016276 GCACCTCCTAAAACAATTTCTTCAGA 60.016 38.462 0.00 0.00 0.00 3.27
337 338 7.363431 CACCTCCTAAAACAATTTCTTCAGAC 58.637 38.462 0.00 0.00 0.00 3.51
338 339 7.013274 CACCTCCTAAAACAATTTCTTCAGACA 59.987 37.037 0.00 0.00 0.00 3.41
339 340 7.725844 ACCTCCTAAAACAATTTCTTCAGACAT 59.274 33.333 0.00 0.00 0.00 3.06
340 341 8.579863 CCTCCTAAAACAATTTCTTCAGACATT 58.420 33.333 0.00 0.00 0.00 2.71
341 342 9.971922 CTCCTAAAACAATTTCTTCAGACATTT 57.028 29.630 0.00 0.00 0.00 2.32
647 648 1.528586 CAGCAATACATGTAGCTCCGC 59.471 52.381 14.83 10.46 34.61 5.54
648 649 0.868406 GCAATACATGTAGCTCCGCC 59.132 55.000 11.91 0.00 0.00 6.13
649 650 1.139989 CAATACATGTAGCTCCGCCG 58.860 55.000 11.91 0.00 0.00 6.46
650 651 0.033504 AATACATGTAGCTCCGCCGG 59.966 55.000 11.91 0.00 0.00 6.13
651 652 1.113517 ATACATGTAGCTCCGCCGGT 61.114 55.000 11.91 0.00 0.00 5.28
652 653 1.324740 TACATGTAGCTCCGCCGGTT 61.325 55.000 1.63 0.00 0.00 4.44
653 654 1.883084 CATGTAGCTCCGCCGGTTC 60.883 63.158 1.63 0.00 0.00 3.62
654 655 3.090219 ATGTAGCTCCGCCGGTTCC 62.090 63.158 1.63 0.00 0.00 3.62
655 656 3.459063 GTAGCTCCGCCGGTTCCT 61.459 66.667 1.63 0.36 0.00 3.36
656 657 2.123428 GTAGCTCCGCCGGTTCCTA 61.123 63.158 1.63 0.00 0.00 2.94
657 658 1.152610 TAGCTCCGCCGGTTCCTAT 60.153 57.895 1.63 0.00 0.00 2.57
658 659 0.757935 TAGCTCCGCCGGTTCCTATT 60.758 55.000 1.63 0.00 0.00 1.73
659 660 0.757935 AGCTCCGCCGGTTCCTATTA 60.758 55.000 1.63 0.00 0.00 0.98
660 661 0.105408 GCTCCGCCGGTTCCTATTAA 59.895 55.000 1.63 0.00 0.00 1.40
675 676 3.395941 CCTATTAAGGGGCCTGATCAGTT 59.604 47.826 21.11 10.85 39.48 3.16
720 721 3.976793 ATATTTGGCATGCGAACAGAG 57.023 42.857 15.22 0.00 0.00 3.35
751 752 2.224161 CCTAGGTGGCTATGTCTCTTGC 60.224 54.545 0.00 0.00 0.00 4.01
793 794 8.545229 TTGGCAAAATACCAATCATAACTTTG 57.455 30.769 0.00 0.00 42.23 2.77
863 864 6.931840 TGGAAAGGCAAATGTTGGTATTAAAC 59.068 34.615 0.00 0.00 0.00 2.01
924 925 3.584406 TCATCATGAACCTTGTCTCACCT 59.416 43.478 0.00 0.00 0.00 4.00
951 952 3.070018 CTCAGGTCGCAATCTTGTTCTT 58.930 45.455 0.00 0.00 0.00 2.52
1005 1006 1.701847 AGGTATGATGAGTGGATGGCC 59.298 52.381 0.00 0.00 0.00 5.36
1089 1090 0.249398 ACCATCGCACCTACAAGGAC 59.751 55.000 0.00 0.00 37.67 3.85
1155 1156 5.125417 TGCCAAGATGGTTGATAAGCTTAAC 59.875 40.000 10.85 8.63 40.46 2.01
1162 1163 5.992729 TGGTTGATAAGCTTAACGTGTTTC 58.007 37.500 10.85 2.18 0.00 2.78
1164 1165 5.049267 GGTTGATAAGCTTAACGTGTTTCCA 60.049 40.000 10.85 0.00 0.00 3.53
1206 1207 4.246458 ACTTTTGCGACTATTCTGAGGAC 58.754 43.478 0.00 0.00 0.00 3.85
1251 1252 2.153817 CGAGTAATCGTGATTGCCATCG 59.846 50.000 4.05 6.64 34.54 3.84
1295 1296 3.688049 ATGCCTAAGGTAAAATGGGCT 57.312 42.857 0.00 0.00 40.15 5.19
1296 1297 3.466395 TGCCTAAGGTAAAATGGGCTT 57.534 42.857 0.00 0.00 40.15 4.35
1297 1298 3.785364 TGCCTAAGGTAAAATGGGCTTT 58.215 40.909 0.00 0.00 40.15 3.51
1298 1299 3.767131 TGCCTAAGGTAAAATGGGCTTTC 59.233 43.478 0.00 0.00 40.15 2.62
1299 1300 3.181490 GCCTAAGGTAAAATGGGCTTTCG 60.181 47.826 0.00 0.00 36.96 3.46
1300 1301 4.014406 CCTAAGGTAAAATGGGCTTTCGT 58.986 43.478 0.00 0.00 0.00 3.85
1301 1302 4.461431 CCTAAGGTAAAATGGGCTTTCGTT 59.539 41.667 0.00 0.00 0.00 3.85
1302 1303 4.514781 AAGGTAAAATGGGCTTTCGTTC 57.485 40.909 0.00 0.00 0.00 3.95
1303 1304 2.823747 AGGTAAAATGGGCTTTCGTTCC 59.176 45.455 0.00 0.00 0.00 3.62
1304 1305 2.094390 GGTAAAATGGGCTTTCGTTCCC 60.094 50.000 0.00 0.00 42.93 3.97
1310 1311 2.640316 GGGCTTTCGTTCCCATCTAT 57.360 50.000 0.00 0.00 42.18 1.98
1311 1312 2.932261 GGGCTTTCGTTCCCATCTATT 58.068 47.619 0.00 0.00 42.18 1.73
1312 1313 3.288092 GGGCTTTCGTTCCCATCTATTT 58.712 45.455 0.00 0.00 42.18 1.40
1313 1314 3.066760 GGGCTTTCGTTCCCATCTATTTG 59.933 47.826 0.00 0.00 42.18 2.32
1314 1315 3.945285 GGCTTTCGTTCCCATCTATTTGA 59.055 43.478 0.00 0.00 0.00 2.69
1315 1316 4.580580 GGCTTTCGTTCCCATCTATTTGAT 59.419 41.667 0.00 0.00 35.40 2.57
1316 1317 5.067805 GGCTTTCGTTCCCATCTATTTGATT 59.932 40.000 0.00 0.00 32.05 2.57
1317 1318 6.262273 GGCTTTCGTTCCCATCTATTTGATTA 59.738 38.462 0.00 0.00 32.05 1.75
1318 1319 7.201785 GGCTTTCGTTCCCATCTATTTGATTAA 60.202 37.037 0.00 0.00 32.05 1.40
1319 1320 8.352942 GCTTTCGTTCCCATCTATTTGATTAAT 58.647 33.333 0.00 0.00 32.05 1.40
1320 1321 9.669353 CTTTCGTTCCCATCTATTTGATTAATG 57.331 33.333 0.00 0.00 32.05 1.90
1321 1322 8.746052 TTCGTTCCCATCTATTTGATTAATGT 57.254 30.769 0.00 0.00 32.05 2.71
1322 1323 9.839817 TTCGTTCCCATCTATTTGATTAATGTA 57.160 29.630 0.00 0.00 32.05 2.29
1354 1355 9.780413 GCTTTGATTAGAATTAGCTATAATGGC 57.220 33.333 0.00 0.00 31.81 4.40
1368 1369 8.940397 AGCTATAATGGCATAACCTTACATTT 57.060 30.769 0.00 0.00 40.22 2.32
1374 1375 7.896383 ATGGCATAACCTTACATTTATGTGT 57.104 32.000 0.00 0.00 39.58 3.72
1375 1376 7.094508 TGGCATAACCTTACATTTATGTGTG 57.905 36.000 5.64 0.00 39.58 3.82
1376 1377 5.977129 GGCATAACCTTACATTTATGTGTGC 59.023 40.000 5.64 4.87 37.79 4.57
1377 1378 6.183360 GGCATAACCTTACATTTATGTGTGCT 60.183 38.462 5.64 0.00 37.79 4.40
1378 1379 7.012894 GGCATAACCTTACATTTATGTGTGCTA 59.987 37.037 5.64 0.00 37.79 3.49
1379 1380 8.567948 GCATAACCTTACATTTATGTGTGCTAT 58.432 33.333 5.64 0.00 41.89 2.97
1380 1381 9.882996 CATAACCTTACATTTATGTGTGCTATG 57.117 33.333 5.64 3.61 41.89 2.23
1381 1382 7.938140 AACCTTACATTTATGTGTGCTATGT 57.062 32.000 5.64 0.00 41.89 2.29
1382 1383 7.938140 ACCTTACATTTATGTGTGCTATGTT 57.062 32.000 5.64 0.00 41.89 2.71
1383 1384 9.456147 AACCTTACATTTATGTGTGCTATGTTA 57.544 29.630 5.64 0.00 41.89 2.41
1384 1385 9.456147 ACCTTACATTTATGTGTGCTATGTTAA 57.544 29.630 5.64 0.00 41.89 2.01
1389 1390 9.177608 ACATTTATGTGTGCTATGTTAATCTGT 57.822 29.630 0.00 0.00 40.03 3.41
1394 1395 8.962884 ATGTGTGCTATGTTAATCTGTATGAA 57.037 30.769 0.00 0.00 0.00 2.57
1395 1396 8.196802 TGTGTGCTATGTTAATCTGTATGAAC 57.803 34.615 0.00 0.00 0.00 3.18
1396 1397 8.040727 TGTGTGCTATGTTAATCTGTATGAACT 58.959 33.333 0.00 0.00 28.84 3.01
1397 1398 8.543774 GTGTGCTATGTTAATCTGTATGAACTC 58.456 37.037 0.00 0.00 28.84 3.01
1398 1399 7.435192 TGTGCTATGTTAATCTGTATGAACTCG 59.565 37.037 0.00 0.00 28.84 4.18
1399 1400 6.923508 TGCTATGTTAATCTGTATGAACTCGG 59.076 38.462 0.00 0.00 28.84 4.63
1400 1401 6.924060 GCTATGTTAATCTGTATGAACTCGGT 59.076 38.462 0.00 0.00 28.84 4.69
1401 1402 7.115095 GCTATGTTAATCTGTATGAACTCGGTC 59.885 40.741 0.00 0.00 28.84 4.79
1402 1403 6.275494 TGTTAATCTGTATGAACTCGGTCA 57.725 37.500 0.00 0.00 28.84 4.02
1403 1404 6.330278 TGTTAATCTGTATGAACTCGGTCAG 58.670 40.000 0.00 0.00 28.84 3.51
1404 1405 4.392921 AATCTGTATGAACTCGGTCAGG 57.607 45.455 0.00 0.00 0.00 3.86
1405 1406 2.100197 TCTGTATGAACTCGGTCAGGG 58.900 52.381 0.00 0.00 0.00 4.45
1406 1407 1.825474 CTGTATGAACTCGGTCAGGGT 59.175 52.381 0.00 0.00 32.66 4.34
1407 1408 1.548719 TGTATGAACTCGGTCAGGGTG 59.451 52.381 0.00 0.00 30.92 4.61
1408 1409 0.535335 TATGAACTCGGTCAGGGTGC 59.465 55.000 0.00 0.00 30.92 5.01
1409 1410 1.480212 ATGAACTCGGTCAGGGTGCA 61.480 55.000 0.00 0.00 44.64 4.57
1410 1411 1.374758 GAACTCGGTCAGGGTGCAG 60.375 63.158 0.00 0.00 30.92 4.41
1411 1412 2.100879 GAACTCGGTCAGGGTGCAGT 62.101 60.000 0.00 0.00 30.92 4.40
1412 1413 0.830444 AACTCGGTCAGGGTGCAGTA 60.830 55.000 0.00 0.00 30.92 2.74
1413 1414 0.614979 ACTCGGTCAGGGTGCAGTAT 60.615 55.000 0.00 0.00 27.95 2.12
1414 1415 0.179100 CTCGGTCAGGGTGCAGTATG 60.179 60.000 0.00 0.00 40.87 2.39
1415 1416 0.613572 TCGGTCAGGGTGCAGTATGA 60.614 55.000 0.00 0.00 39.69 2.15
1416 1417 0.179100 CGGTCAGGGTGCAGTATGAG 60.179 60.000 0.00 0.00 39.69 2.90
1417 1418 0.462759 GGTCAGGGTGCAGTATGAGC 60.463 60.000 8.01 8.01 39.69 4.26
1418 1419 0.462759 GTCAGGGTGCAGTATGAGCC 60.463 60.000 0.00 0.00 39.69 4.70
1419 1420 0.618680 TCAGGGTGCAGTATGAGCCT 60.619 55.000 0.00 0.00 42.16 4.58
1420 1421 0.254178 CAGGGTGCAGTATGAGCCTT 59.746 55.000 0.00 0.00 40.43 4.35
1421 1422 1.486310 CAGGGTGCAGTATGAGCCTTA 59.514 52.381 0.00 0.00 40.43 2.69
1422 1423 2.105477 CAGGGTGCAGTATGAGCCTTAT 59.895 50.000 0.00 0.00 40.43 1.73
1423 1424 2.105477 AGGGTGCAGTATGAGCCTTATG 59.895 50.000 0.00 0.00 39.79 1.90
1424 1425 2.104792 GGGTGCAGTATGAGCCTTATGA 59.895 50.000 0.00 0.00 39.69 2.15
1425 1426 3.433598 GGGTGCAGTATGAGCCTTATGAA 60.434 47.826 0.00 0.00 39.69 2.57
1426 1427 4.392940 GGTGCAGTATGAGCCTTATGAAT 58.607 43.478 0.00 0.00 39.69 2.57
1478 1479 6.588373 TGTCATTGATCATCTGCACAAAAATG 59.412 34.615 0.00 0.00 0.00 2.32
1484 1485 7.751732 TGATCATCTGCACAAAAATGTAGTAC 58.248 34.615 0.00 0.00 34.27 2.73
1525 1529 7.489160 GTGTAGAATCAGTCATACACCATACA 58.511 38.462 3.53 0.00 41.25 2.29
1546 1550 6.149129 ACAACATGTAATATCTCTGCTCGA 57.851 37.500 0.00 0.00 0.00 4.04
1556 1560 1.065199 TCTCTGCTCGATGGGCATTTT 60.065 47.619 0.00 0.00 39.07 1.82
1615 1619 3.131396 ACGAAACGAACTGCAAGAGATT 58.869 40.909 0.00 0.00 37.43 2.40
1616 1620 3.184581 ACGAAACGAACTGCAAGAGATTC 59.815 43.478 0.00 0.00 37.43 2.52
1629 1633 6.175471 TGCAAGAGATTCATGTGAACTGTAT 58.825 36.000 0.00 0.00 36.80 2.29
1631 1635 6.484540 CAAGAGATTCATGTGAACTGTATGC 58.515 40.000 0.00 0.00 36.80 3.14
1644 1648 5.069119 TGAACTGTATGCCACCTCTACATAG 59.931 44.000 0.00 0.00 0.00 2.23
1662 1666 9.504708 TCTACATAGTAGTACTCCATTAAGAGC 57.495 37.037 5.96 0.00 37.39 4.09
1753 1757 9.791820 CATATACATCAAAGAAAATGACTTGCA 57.208 29.630 0.00 0.00 0.00 4.08
1810 1842 3.077484 CTCCAGGGAGCTCATTTTCAA 57.923 47.619 17.19 0.00 35.31 2.69
1824 1856 9.122779 AGCTCATTTTCAAATTTCATTTTTCCA 57.877 25.926 0.00 0.00 0.00 3.53
1833 1865 7.603404 TCAAATTTCATTTTTCCAGATTGCGAT 59.397 29.630 0.00 0.00 0.00 4.58
1834 1866 7.910441 AATTTCATTTTTCCAGATTGCGATT 57.090 28.000 0.00 0.00 0.00 3.34
1875 1908 8.148351 GTGAACACCCATACACATGTATACTAT 58.852 37.037 0.00 0.00 39.06 2.12
1880 1913 9.586435 CACCCATACACATGTATACTATGTATG 57.414 37.037 27.09 27.09 46.62 2.39
1881 1914 9.321532 ACCCATACACATGTATACTATGTATGT 57.678 33.333 28.95 21.06 46.06 2.29
1896 1929 7.469260 ACTATGTATGTGTAAAATTTGACGCC 58.531 34.615 15.26 3.07 0.00 5.68
1897 1930 5.690997 TGTATGTGTAAAATTTGACGCCA 57.309 34.783 15.26 8.22 0.00 5.69
1898 1931 6.260870 TGTATGTGTAAAATTTGACGCCAT 57.739 33.333 15.26 13.83 0.00 4.40
1899 1932 6.682746 TGTATGTGTAAAATTTGACGCCATT 58.317 32.000 15.26 4.72 0.00 3.16
1900 1933 7.817641 TGTATGTGTAAAATTTGACGCCATTA 58.182 30.769 15.26 3.90 0.00 1.90
1901 1934 7.965655 TGTATGTGTAAAATTTGACGCCATTAG 59.034 33.333 15.26 0.00 0.00 1.73
1902 1935 6.561737 TGTGTAAAATTTGACGCCATTAGA 57.438 33.333 15.26 0.00 0.00 2.10
1903 1936 6.971602 TGTGTAAAATTTGACGCCATTAGAA 58.028 32.000 15.26 0.00 0.00 2.10
1904 1937 7.598278 TGTGTAAAATTTGACGCCATTAGAAT 58.402 30.769 15.26 0.00 0.00 2.40
1905 1938 7.753132 TGTGTAAAATTTGACGCCATTAGAATC 59.247 33.333 15.26 0.00 0.00 2.52
1906 1939 7.968405 GTGTAAAATTTGACGCCATTAGAATCT 59.032 33.333 7.89 0.00 0.00 2.40
1907 1940 8.181573 TGTAAAATTTGACGCCATTAGAATCTC 58.818 33.333 1.15 0.00 0.00 2.75
1908 1941 6.757897 AAATTTGACGCCATTAGAATCTCA 57.242 33.333 0.00 0.00 0.00 3.27
1909 1942 5.741388 ATTTGACGCCATTAGAATCTCAC 57.259 39.130 0.00 0.00 0.00 3.51
1910 1943 3.885724 TGACGCCATTAGAATCTCACA 57.114 42.857 0.00 0.00 0.00 3.58
1911 1944 4.406648 TGACGCCATTAGAATCTCACAT 57.593 40.909 0.00 0.00 0.00 3.21
1912 1945 4.122046 TGACGCCATTAGAATCTCACATG 58.878 43.478 0.00 0.00 0.00 3.21
1913 1946 4.122776 GACGCCATTAGAATCTCACATGT 58.877 43.478 0.00 0.00 0.00 3.21
1914 1947 3.873361 ACGCCATTAGAATCTCACATGTG 59.127 43.478 20.18 20.18 0.00 3.21
1915 1948 3.249320 CGCCATTAGAATCTCACATGTGG 59.751 47.826 25.16 15.72 0.00 4.17
1916 1949 4.202441 GCCATTAGAATCTCACATGTGGT 58.798 43.478 25.16 9.49 0.00 4.16
1931 1964 6.707440 ACATGTGGTGAATACAAAAAGACA 57.293 33.333 0.00 0.00 0.00 3.41
1932 1965 7.106439 ACATGTGGTGAATACAAAAAGACAA 57.894 32.000 0.00 0.00 0.00 3.18
1933 1966 7.551585 ACATGTGGTGAATACAAAAAGACAAA 58.448 30.769 0.00 0.00 0.00 2.83
1934 1967 7.491048 ACATGTGGTGAATACAAAAAGACAAAC 59.509 33.333 0.00 0.00 0.00 2.93
1935 1968 6.925211 TGTGGTGAATACAAAAAGACAAACA 58.075 32.000 0.00 0.00 0.00 2.83
1936 1969 6.809196 TGTGGTGAATACAAAAAGACAAACAC 59.191 34.615 0.00 0.00 0.00 3.32
1937 1970 6.809196 GTGGTGAATACAAAAAGACAAACACA 59.191 34.615 0.00 0.00 0.00 3.72
1938 1971 7.491048 GTGGTGAATACAAAAAGACAAACACAT 59.509 33.333 0.00 0.00 0.00 3.21
1939 1972 8.037758 TGGTGAATACAAAAAGACAAACACATT 58.962 29.630 0.00 0.00 0.00 2.71
1940 1973 8.878769 GGTGAATACAAAAAGACAAACACATTT 58.121 29.630 0.00 0.00 0.00 2.32
1947 1980 9.587461 ACAAAAAGACAAACACATTTTTAAACG 57.413 25.926 0.00 0.00 34.13 3.60
1948 1981 9.045772 CAAAAAGACAAACACATTTTTAAACGG 57.954 29.630 0.00 0.00 34.13 4.44
1949 1982 5.959652 AGACAAACACATTTTTAAACGGC 57.040 34.783 0.00 0.00 0.00 5.68
1950 1983 4.806775 AGACAAACACATTTTTAAACGGCC 59.193 37.500 0.00 0.00 0.00 6.13
1951 1984 4.760878 ACAAACACATTTTTAAACGGCCT 58.239 34.783 0.00 0.00 0.00 5.19
1952 1985 5.179533 ACAAACACATTTTTAAACGGCCTT 58.820 33.333 0.00 0.00 0.00 4.35
1953 1986 5.644206 ACAAACACATTTTTAAACGGCCTTT 59.356 32.000 0.00 3.18 0.00 3.11
1954 1987 6.149640 ACAAACACATTTTTAAACGGCCTTTT 59.850 30.769 12.38 12.38 0.00 2.27
1955 1988 6.745159 AACACATTTTTAAACGGCCTTTTT 57.255 29.167 13.02 8.41 0.00 1.94
1970 2003 3.448469 TTTTTCTGTTGGGCCGGAT 57.552 47.368 5.05 0.00 0.00 4.18
1971 2004 1.710816 TTTTTCTGTTGGGCCGGATT 58.289 45.000 5.05 0.00 0.00 3.01
1972 2005 1.710816 TTTTCTGTTGGGCCGGATTT 58.289 45.000 5.05 0.00 0.00 2.17
1973 2006 1.710816 TTTCTGTTGGGCCGGATTTT 58.289 45.000 5.05 0.00 0.00 1.82
1974 2007 1.710816 TTCTGTTGGGCCGGATTTTT 58.289 45.000 5.05 0.00 0.00 1.94
2030 2063 9.798885 TTAAACAAAATTTGACACGTTCTTTTG 57.201 25.926 13.19 14.60 38.74 2.44
2031 2064 6.401955 ACAAAATTTGACACGTTCTTTTGG 57.598 33.333 13.19 9.12 37.70 3.28
2032 2065 6.159988 ACAAAATTTGACACGTTCTTTTGGA 58.840 32.000 13.19 0.00 37.70 3.53
2033 2066 6.647067 ACAAAATTTGACACGTTCTTTTGGAA 59.353 30.769 13.19 0.00 37.70 3.53
2054 2087 8.765488 TGGAACACATATATGTTTCAATGGAT 57.235 30.769 25.35 9.71 43.64 3.41
2055 2088 9.199645 TGGAACACATATATGTTTCAATGGATT 57.800 29.630 25.35 10.79 43.64 3.01
2119 2152 9.773328 TTTCTATGTTTTCAAAATATCGAGCTG 57.227 29.630 0.00 0.00 0.00 4.24
2120 2153 7.409697 TCTATGTTTTCAAAATATCGAGCTGC 58.590 34.615 0.00 0.00 0.00 5.25
2121 2154 4.732784 TGTTTTCAAAATATCGAGCTGCC 58.267 39.130 0.00 0.00 0.00 4.85
2122 2155 4.458989 TGTTTTCAAAATATCGAGCTGCCT 59.541 37.500 0.00 0.00 0.00 4.75
2123 2156 4.621068 TTTCAAAATATCGAGCTGCCTG 57.379 40.909 0.00 0.00 0.00 4.85
2124 2157 2.564771 TCAAAATATCGAGCTGCCTGG 58.435 47.619 0.00 0.00 0.00 4.45
2125 2158 2.170397 TCAAAATATCGAGCTGCCTGGA 59.830 45.455 0.00 0.00 0.00 3.86
2126 2159 2.540265 AAATATCGAGCTGCCTGGAG 57.460 50.000 0.00 0.00 0.00 3.86
2127 2160 0.034616 AATATCGAGCTGCCTGGAGC 59.965 55.000 2.02 2.02 44.14 4.70
2141 2174 3.896479 GAGCTCGGCCTCCAAAAG 58.104 61.111 0.00 0.00 0.00 2.27
2142 2175 1.003233 GAGCTCGGCCTCCAAAAGT 60.003 57.895 0.00 0.00 0.00 2.66
2143 2176 1.003233 AGCTCGGCCTCCAAAAGTC 60.003 57.895 0.00 0.00 0.00 3.01
2144 2177 2.391389 GCTCGGCCTCCAAAAGTCG 61.391 63.158 0.00 0.00 0.00 4.18
2145 2178 1.004918 CTCGGCCTCCAAAAGTCGT 60.005 57.895 0.00 0.00 0.00 4.34
2146 2179 1.005394 TCGGCCTCCAAAAGTCGTC 60.005 57.895 0.00 0.00 0.00 4.20
2147 2180 1.301401 CGGCCTCCAAAAGTCGTCA 60.301 57.895 0.00 0.00 0.00 4.35
2148 2181 0.882927 CGGCCTCCAAAAGTCGTCAA 60.883 55.000 0.00 0.00 0.00 3.18
2149 2182 1.534729 GGCCTCCAAAAGTCGTCAAT 58.465 50.000 0.00 0.00 0.00 2.57
2150 2183 1.468914 GGCCTCCAAAAGTCGTCAATC 59.531 52.381 0.00 0.00 0.00 2.67
2151 2184 1.468914 GCCTCCAAAAGTCGTCAATCC 59.531 52.381 0.00 0.00 0.00 3.01
2152 2185 2.778299 CCTCCAAAAGTCGTCAATCCA 58.222 47.619 0.00 0.00 0.00 3.41
2153 2186 3.347216 CCTCCAAAAGTCGTCAATCCAT 58.653 45.455 0.00 0.00 0.00 3.41
2154 2187 4.513442 CCTCCAAAAGTCGTCAATCCATA 58.487 43.478 0.00 0.00 0.00 2.74
2155 2188 5.126067 CCTCCAAAAGTCGTCAATCCATAT 58.874 41.667 0.00 0.00 0.00 1.78
2156 2189 6.288294 CCTCCAAAAGTCGTCAATCCATATA 58.712 40.000 0.00 0.00 0.00 0.86
2157 2190 6.936900 CCTCCAAAAGTCGTCAATCCATATAT 59.063 38.462 0.00 0.00 0.00 0.86
2158 2191 8.094548 CCTCCAAAAGTCGTCAATCCATATATA 58.905 37.037 0.00 0.00 0.00 0.86
2159 2192 9.658799 CTCCAAAAGTCGTCAATCCATATATAT 57.341 33.333 0.00 0.00 0.00 0.86
2191 2224 9.577222 ACTCCATATTAGTAGAGGAAGTACTTC 57.423 37.037 24.73 24.73 38.80 3.01
2192 2225 9.802039 CTCCATATTAGTAGAGGAAGTACTTCT 57.198 37.037 29.66 18.27 39.45 2.85
2202 2235 9.671279 GTAGAGGAAGTACTTCTATATCTACCC 57.329 40.741 30.62 20.70 38.94 3.69
2203 2236 8.290463 AGAGGAAGTACTTCTATATCTACCCA 57.710 38.462 29.66 0.00 39.45 4.51
2204 2237 8.907050 AGAGGAAGTACTTCTATATCTACCCAT 58.093 37.037 29.66 2.81 39.45 4.00
2205 2238 9.536510 GAGGAAGTACTTCTATATCTACCCATT 57.463 37.037 29.66 0.79 39.45 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.982339 ACTCCCTATATGGCGAGACT 57.018 50.000 7.66 0.00 36.92 3.24
24 25 7.390440 CCAAACAGTTCATCCAACATCTTACTA 59.610 37.037 0.00 0.00 37.48 1.82
124 125 0.616371 TCCAAGTACCGTCCAATGGG 59.384 55.000 0.00 0.00 0.00 4.00
134 135 7.886338 ACAAAGAGATTTCAATTCCAAGTACC 58.114 34.615 0.00 0.00 0.00 3.34
161 162 8.885494 ATGTGCAACTATGTTGTTGTTTAAAT 57.115 26.923 11.35 0.00 46.33 1.40
171 172 5.531634 ACTTCCAAATGTGCAACTATGTTG 58.468 37.500 6.12 6.12 38.04 3.33
179 180 5.423015 TGCTAAAAACTTCCAAATGTGCAA 58.577 33.333 0.00 0.00 0.00 4.08
220 221 1.185618 TTGTCTAGCTCCGCCACTGT 61.186 55.000 0.00 0.00 0.00 3.55
221 222 0.037326 TTTGTCTAGCTCCGCCACTG 60.037 55.000 0.00 0.00 0.00 3.66
223 224 0.246635 TCTTTGTCTAGCTCCGCCAC 59.753 55.000 0.00 0.00 0.00 5.01
225 226 1.936547 CATTCTTTGTCTAGCTCCGCC 59.063 52.381 0.00 0.00 0.00 6.13
226 227 1.328986 GCATTCTTTGTCTAGCTCCGC 59.671 52.381 0.00 0.00 0.00 5.54
227 228 2.606725 CAGCATTCTTTGTCTAGCTCCG 59.393 50.000 0.00 0.00 0.00 4.63
229 230 3.866651 TCCAGCATTCTTTGTCTAGCTC 58.133 45.455 0.00 0.00 0.00 4.09
231 232 2.941720 CCTCCAGCATTCTTTGTCTAGC 59.058 50.000 0.00 0.00 0.00 3.42
233 234 2.239654 CCCCTCCAGCATTCTTTGTCTA 59.760 50.000 0.00 0.00 0.00 2.59
234 235 1.005215 CCCCTCCAGCATTCTTTGTCT 59.995 52.381 0.00 0.00 0.00 3.41
235 236 1.467920 CCCCTCCAGCATTCTTTGTC 58.532 55.000 0.00 0.00 0.00 3.18
236 237 0.613012 GCCCCTCCAGCATTCTTTGT 60.613 55.000 0.00 0.00 0.00 2.83
241 242 1.378514 TTTCGCCCCTCCAGCATTC 60.379 57.895 0.00 0.00 0.00 2.67
242 243 1.379044 CTTTCGCCCCTCCAGCATT 60.379 57.895 0.00 0.00 0.00 3.56
243 244 2.273449 CTTTCGCCCCTCCAGCAT 59.727 61.111 0.00 0.00 0.00 3.79
244 245 4.033776 CCTTTCGCCCCTCCAGCA 62.034 66.667 0.00 0.00 0.00 4.41
246 247 0.251165 TTTTCCTTTCGCCCCTCCAG 60.251 55.000 0.00 0.00 0.00 3.86
247 248 0.407918 ATTTTCCTTTCGCCCCTCCA 59.592 50.000 0.00 0.00 0.00 3.86
248 249 2.022195 GTATTTTCCTTTCGCCCCTCC 58.978 52.381 0.00 0.00 0.00 4.30
250 251 2.823747 GTTGTATTTTCCTTTCGCCCCT 59.176 45.455 0.00 0.00 0.00 4.79
253 254 4.231718 TGTGTTGTATTTTCCTTTCGCC 57.768 40.909 0.00 0.00 0.00 5.54
255 256 7.359595 TCAGAATGTGTTGTATTTTCCTTTCG 58.640 34.615 0.00 0.00 37.40 3.46
257 258 7.255942 CCCTCAGAATGTGTTGTATTTTCCTTT 60.256 37.037 0.00 0.00 37.40 3.11
258 259 6.209391 CCCTCAGAATGTGTTGTATTTTCCTT 59.791 38.462 0.00 0.00 37.40 3.36
259 260 5.711976 CCCTCAGAATGTGTTGTATTTTCCT 59.288 40.000 0.00 0.00 37.40 3.36
260 261 5.105756 CCCCTCAGAATGTGTTGTATTTTCC 60.106 44.000 0.00 0.00 37.40 3.13
262 263 4.772100 CCCCCTCAGAATGTGTTGTATTTT 59.228 41.667 0.00 0.00 37.40 1.82
264 265 3.877735 GCCCCCTCAGAATGTGTTGTATT 60.878 47.826 0.00 0.00 37.40 1.89
265 266 2.357154 GCCCCCTCAGAATGTGTTGTAT 60.357 50.000 0.00 0.00 37.40 2.29
266 267 1.004277 GCCCCCTCAGAATGTGTTGTA 59.996 52.381 0.00 0.00 37.40 2.41
268 269 0.967380 GGCCCCCTCAGAATGTGTTG 60.967 60.000 0.00 0.00 37.40 3.33
269 270 1.384191 GGCCCCCTCAGAATGTGTT 59.616 57.895 0.00 0.00 37.40 3.32
271 272 0.251742 TTTGGCCCCCTCAGAATGTG 60.252 55.000 0.00 0.00 37.40 3.21
275 276 0.772124 AGTCTTTGGCCCCCTCAGAA 60.772 55.000 0.00 0.00 0.00 3.02
276 277 0.118346 TAGTCTTTGGCCCCCTCAGA 59.882 55.000 0.00 0.00 0.00 3.27
277 278 0.253327 GTAGTCTTTGGCCCCCTCAG 59.747 60.000 0.00 0.00 0.00 3.35
278 279 0.474854 TGTAGTCTTTGGCCCCCTCA 60.475 55.000 0.00 0.00 0.00 3.86
279 280 0.919710 ATGTAGTCTTTGGCCCCCTC 59.080 55.000 0.00 0.00 0.00 4.30
281 282 2.231716 AAATGTAGTCTTTGGCCCCC 57.768 50.000 0.00 0.00 0.00 5.40
282 283 3.832490 AGAAAAATGTAGTCTTTGGCCCC 59.168 43.478 0.00 0.00 0.00 5.80
283 284 6.584185 TTAGAAAAATGTAGTCTTTGGCCC 57.416 37.500 0.00 0.00 0.00 5.80
290 291 9.740710 AGGTGCTTAATTAGAAAAATGTAGTCT 57.259 29.630 0.00 0.00 0.00 3.24
291 292 9.989869 GAGGTGCTTAATTAGAAAAATGTAGTC 57.010 33.333 0.00 0.00 0.00 2.59
292 293 8.957466 GGAGGTGCTTAATTAGAAAAATGTAGT 58.043 33.333 0.00 0.00 0.00 2.73
293 294 9.178758 AGGAGGTGCTTAATTAGAAAAATGTAG 57.821 33.333 0.00 0.00 0.00 2.74
295 296 9.528489 TTAGGAGGTGCTTAATTAGAAAAATGT 57.472 29.630 0.00 0.00 0.00 2.71
299 300 9.357161 TGTTTTAGGAGGTGCTTAATTAGAAAA 57.643 29.630 0.00 0.00 0.00 2.29
300 301 8.927675 TGTTTTAGGAGGTGCTTAATTAGAAA 57.072 30.769 0.00 0.00 0.00 2.52
301 302 8.927675 TTGTTTTAGGAGGTGCTTAATTAGAA 57.072 30.769 0.00 0.00 0.00 2.10
302 303 9.528489 AATTGTTTTAGGAGGTGCTTAATTAGA 57.472 29.630 0.00 0.00 0.00 2.10
305 306 8.870116 AGAAATTGTTTTAGGAGGTGCTTAATT 58.130 29.630 0.00 0.00 0.00 1.40
306 307 8.422577 AGAAATTGTTTTAGGAGGTGCTTAAT 57.577 30.769 0.00 0.00 0.00 1.40
307 308 7.833285 AGAAATTGTTTTAGGAGGTGCTTAA 57.167 32.000 0.00 0.00 0.00 1.85
308 309 7.504238 TGAAGAAATTGTTTTAGGAGGTGCTTA 59.496 33.333 0.00 0.00 0.00 3.09
309 310 6.323739 TGAAGAAATTGTTTTAGGAGGTGCTT 59.676 34.615 0.00 0.00 0.00 3.91
310 311 5.833131 TGAAGAAATTGTTTTAGGAGGTGCT 59.167 36.000 0.00 0.00 0.00 4.40
311 312 6.016276 TCTGAAGAAATTGTTTTAGGAGGTGC 60.016 38.462 0.00 0.00 0.00 5.01
312 313 7.013274 TGTCTGAAGAAATTGTTTTAGGAGGTG 59.987 37.037 0.00 0.00 0.00 4.00
313 314 7.060421 TGTCTGAAGAAATTGTTTTAGGAGGT 58.940 34.615 0.00 0.00 0.00 3.85
314 315 7.510549 TGTCTGAAGAAATTGTTTTAGGAGG 57.489 36.000 0.00 0.00 0.00 4.30
315 316 9.971922 AAATGTCTGAAGAAATTGTTTTAGGAG 57.028 29.630 0.00 0.00 32.57 3.69
642 643 1.270147 CCTTAATAGGAACCGGCGGAG 60.270 57.143 35.78 15.83 45.05 4.63
643 644 0.754472 CCTTAATAGGAACCGGCGGA 59.246 55.000 35.78 10.47 45.05 5.54
644 645 0.250166 CCCTTAATAGGAACCGGCGG 60.250 60.000 27.06 27.06 45.05 6.13
645 646 0.250166 CCCCTTAATAGGAACCGGCG 60.250 60.000 0.00 0.00 45.05 6.46
646 647 0.536687 GCCCCTTAATAGGAACCGGC 60.537 60.000 0.00 0.00 45.05 6.13
647 648 0.109913 GGCCCCTTAATAGGAACCGG 59.890 60.000 0.00 0.00 45.05 5.28
648 649 1.137697 AGGCCCCTTAATAGGAACCG 58.862 55.000 0.00 0.00 45.05 4.44
649 650 2.132686 TCAGGCCCCTTAATAGGAACC 58.867 52.381 0.00 0.00 45.05 3.62
650 651 3.394606 TGATCAGGCCCCTTAATAGGAAC 59.605 47.826 0.00 0.00 45.05 3.62
651 652 3.652869 CTGATCAGGCCCCTTAATAGGAA 59.347 47.826 15.38 0.00 45.05 3.36
652 653 3.251484 CTGATCAGGCCCCTTAATAGGA 58.749 50.000 15.38 0.00 45.05 2.94
653 654 2.982488 ACTGATCAGGCCCCTTAATAGG 59.018 50.000 26.08 0.00 41.60 2.57
654 655 4.505742 GGAACTGATCAGGCCCCTTAATAG 60.506 50.000 26.08 0.00 0.00 1.73
655 656 3.394606 GGAACTGATCAGGCCCCTTAATA 59.605 47.826 26.08 0.00 0.00 0.98
656 657 2.175715 GGAACTGATCAGGCCCCTTAAT 59.824 50.000 26.08 0.00 0.00 1.40
657 658 1.564348 GGAACTGATCAGGCCCCTTAA 59.436 52.381 26.08 0.00 0.00 1.85
658 659 1.213296 GGAACTGATCAGGCCCCTTA 58.787 55.000 26.08 0.00 0.00 2.69
659 660 1.575447 GGGAACTGATCAGGCCCCTT 61.575 60.000 31.58 17.66 39.68 3.95
660 661 2.003548 GGGAACTGATCAGGCCCCT 61.004 63.158 31.58 11.16 39.68 4.79
675 676 0.988832 AGGCAACGATTTGGTAGGGA 59.011 50.000 0.00 0.00 46.39 4.20
720 721 1.153086 CCACCTAGGCATGCCAGTC 60.153 63.158 37.18 11.71 38.92 3.51
771 772 6.818142 AGCCAAAGTTATGATTGGTATTTTGC 59.182 34.615 6.43 0.00 46.29 3.68
780 781 3.872511 TGCCAGCCAAAGTTATGATTG 57.127 42.857 0.00 0.00 0.00 2.67
789 790 3.055963 TGGAAACATATTGCCAGCCAAAG 60.056 43.478 0.00 0.00 38.80 2.77
793 794 2.739609 GCTTGGAAACATATTGCCAGCC 60.740 50.000 0.00 0.00 45.03 4.85
924 925 5.245531 ACAAGATTGCGACCTGAGATAAAA 58.754 37.500 0.00 0.00 0.00 1.52
971 972 5.190528 TCATCATACCTCTTCTTGAAGGCTT 59.809 40.000 0.00 0.00 0.00 4.35
1005 1006 2.595124 TGTATGTGCGGTGATACCTG 57.405 50.000 0.00 0.00 35.66 4.00
1073 1074 1.112113 ATCGTCCTTGTAGGTGCGAT 58.888 50.000 16.07 16.07 43.56 4.58
1089 1090 2.656651 CGCGCCTTCTCCTCATCG 60.657 66.667 0.00 0.00 0.00 3.84
1155 1156 2.983592 GCCCCACCTGGAAACACG 60.984 66.667 0.00 0.00 37.39 4.49
1188 1189 2.089201 TCGTCCTCAGAATAGTCGCAA 58.911 47.619 0.00 0.00 0.00 4.85
1206 1207 0.809241 CTAAGCTGGCTTGCCTCTCG 60.809 60.000 16.87 0.59 37.47 4.04
1251 1252 1.598701 GCCACTTCCTTGCCATCACC 61.599 60.000 0.00 0.00 0.00 4.02
1295 1296 9.184523 ACATTAATCAAATAGATGGGAACGAAA 57.815 29.630 0.00 0.00 36.96 3.46
1296 1297 8.746052 ACATTAATCAAATAGATGGGAACGAA 57.254 30.769 0.00 0.00 36.96 3.85
1328 1329 9.780413 GCCATTATAGCTAATTCTAATCAAAGC 57.220 33.333 0.00 0.00 0.00 3.51
1343 1344 8.940397 AAATGTAAGGTTATGCCATTATAGCT 57.060 30.769 0.00 0.00 40.61 3.32
1348 1349 9.415008 ACACATAAATGTAAGGTTATGCCATTA 57.585 29.630 0.00 0.00 40.05 1.90
1349 1350 8.196771 CACACATAAATGTAAGGTTATGCCATT 58.803 33.333 0.00 0.00 40.05 3.16
1350 1351 7.684187 GCACACATAAATGTAAGGTTATGCCAT 60.684 37.037 0.00 0.00 40.05 4.40
1351 1352 6.405286 GCACACATAAATGTAAGGTTATGCCA 60.405 38.462 0.00 0.00 40.05 4.92
1352 1353 5.977129 GCACACATAAATGTAAGGTTATGCC 59.023 40.000 0.00 0.00 40.05 4.40
1353 1354 6.795399 AGCACACATAAATGTAAGGTTATGC 58.205 36.000 0.00 0.00 40.05 3.14
1354 1355 9.882996 CATAGCACACATAAATGTAAGGTTATG 57.117 33.333 0.00 0.00 41.48 1.90
1355 1356 9.627123 ACATAGCACACATAAATGTAAGGTTAT 57.373 29.630 0.00 0.00 39.39 1.89
1356 1357 9.456147 AACATAGCACACATAAATGTAAGGTTA 57.544 29.630 0.00 0.00 39.39 2.85
1357 1358 7.938140 ACATAGCACACATAAATGTAAGGTT 57.062 32.000 0.00 0.00 39.39 3.50
1358 1359 7.938140 AACATAGCACACATAAATGTAAGGT 57.062 32.000 0.00 0.44 39.39 3.50
1363 1364 9.177608 ACAGATTAACATAGCACACATAAATGT 57.822 29.630 0.00 0.00 42.84 2.71
1369 1370 8.830580 GTTCATACAGATTAACATAGCACACAT 58.169 33.333 0.00 0.00 0.00 3.21
1370 1371 8.040727 AGTTCATACAGATTAACATAGCACACA 58.959 33.333 0.00 0.00 0.00 3.72
1371 1372 8.425577 AGTTCATACAGATTAACATAGCACAC 57.574 34.615 0.00 0.00 0.00 3.82
1372 1373 7.435192 CGAGTTCATACAGATTAACATAGCACA 59.565 37.037 0.00 0.00 0.00 4.57
1373 1374 7.096023 CCGAGTTCATACAGATTAACATAGCAC 60.096 40.741 0.00 0.00 0.00 4.40
1374 1375 6.923508 CCGAGTTCATACAGATTAACATAGCA 59.076 38.462 0.00 0.00 0.00 3.49
1375 1376 6.924060 ACCGAGTTCATACAGATTAACATAGC 59.076 38.462 0.00 0.00 0.00 2.97
1376 1377 8.135529 TGACCGAGTTCATACAGATTAACATAG 58.864 37.037 0.00 0.00 0.00 2.23
1377 1378 8.002984 TGACCGAGTTCATACAGATTAACATA 57.997 34.615 0.00 0.00 0.00 2.29
1378 1379 6.873997 TGACCGAGTTCATACAGATTAACAT 58.126 36.000 0.00 0.00 0.00 2.71
1379 1380 6.275494 TGACCGAGTTCATACAGATTAACA 57.725 37.500 0.00 0.00 0.00 2.41
1380 1381 5.749109 CCTGACCGAGTTCATACAGATTAAC 59.251 44.000 0.00 0.00 0.00 2.01
1381 1382 5.163447 CCCTGACCGAGTTCATACAGATTAA 60.163 44.000 0.00 0.00 0.00 1.40
1382 1383 4.341235 CCCTGACCGAGTTCATACAGATTA 59.659 45.833 0.00 0.00 0.00 1.75
1383 1384 3.133003 CCCTGACCGAGTTCATACAGATT 59.867 47.826 0.00 0.00 0.00 2.40
1384 1385 2.695666 CCCTGACCGAGTTCATACAGAT 59.304 50.000 0.00 0.00 0.00 2.90
1385 1386 2.100197 CCCTGACCGAGTTCATACAGA 58.900 52.381 0.00 0.00 0.00 3.41
1386 1387 1.825474 ACCCTGACCGAGTTCATACAG 59.175 52.381 0.00 0.00 0.00 2.74
1387 1388 1.548719 CACCCTGACCGAGTTCATACA 59.451 52.381 0.00 0.00 0.00 2.29
1388 1389 1.739371 GCACCCTGACCGAGTTCATAC 60.739 57.143 0.00 0.00 0.00 2.39
1389 1390 0.535335 GCACCCTGACCGAGTTCATA 59.465 55.000 0.00 0.00 0.00 2.15
1390 1391 1.296715 GCACCCTGACCGAGTTCAT 59.703 57.895 0.00 0.00 0.00 2.57
1391 1392 2.099652 CTGCACCCTGACCGAGTTCA 62.100 60.000 0.00 0.00 0.00 3.18
1392 1393 1.374758 CTGCACCCTGACCGAGTTC 60.375 63.158 0.00 0.00 0.00 3.01
1393 1394 0.830444 TACTGCACCCTGACCGAGTT 60.830 55.000 0.00 0.00 0.00 3.01
1394 1395 0.614979 ATACTGCACCCTGACCGAGT 60.615 55.000 0.00 0.00 0.00 4.18
1395 1396 0.179100 CATACTGCACCCTGACCGAG 60.179 60.000 0.00 0.00 0.00 4.63
1396 1397 0.613572 TCATACTGCACCCTGACCGA 60.614 55.000 0.00 0.00 0.00 4.69
1397 1398 0.179100 CTCATACTGCACCCTGACCG 60.179 60.000 0.00 0.00 0.00 4.79
1398 1399 0.462759 GCTCATACTGCACCCTGACC 60.463 60.000 0.00 0.00 0.00 4.02
1399 1400 0.462759 GGCTCATACTGCACCCTGAC 60.463 60.000 0.00 0.00 0.00 3.51
1400 1401 0.618680 AGGCTCATACTGCACCCTGA 60.619 55.000 0.00 0.00 0.00 3.86
1401 1402 0.254178 AAGGCTCATACTGCACCCTG 59.746 55.000 0.00 0.00 0.00 4.45
1402 1403 1.879575 TAAGGCTCATACTGCACCCT 58.120 50.000 0.00 0.00 0.00 4.34
1403 1404 2.104792 TCATAAGGCTCATACTGCACCC 59.895 50.000 0.00 0.00 0.00 4.61
1404 1405 3.475566 TCATAAGGCTCATACTGCACC 57.524 47.619 0.00 0.00 0.00 5.01
1405 1406 5.049129 GGAATTCATAAGGCTCATACTGCAC 60.049 44.000 7.93 0.00 0.00 4.57
1406 1407 5.065914 GGAATTCATAAGGCTCATACTGCA 58.934 41.667 7.93 0.00 0.00 4.41
1407 1408 5.065914 TGGAATTCATAAGGCTCATACTGC 58.934 41.667 7.93 0.00 0.00 4.40
1408 1409 7.446319 TGATTGGAATTCATAAGGCTCATACTG 59.554 37.037 7.93 0.00 0.00 2.74
1409 1410 7.520798 TGATTGGAATTCATAAGGCTCATACT 58.479 34.615 7.93 0.00 0.00 2.12
1410 1411 7.750229 TGATTGGAATTCATAAGGCTCATAC 57.250 36.000 7.93 0.00 0.00 2.39
1411 1412 8.388589 AGATGATTGGAATTCATAAGGCTCATA 58.611 33.333 7.93 0.00 0.00 2.15
1412 1413 7.176865 CAGATGATTGGAATTCATAAGGCTCAT 59.823 37.037 7.93 8.02 0.00 2.90
1413 1414 6.489022 CAGATGATTGGAATTCATAAGGCTCA 59.511 38.462 7.93 3.87 0.00 4.26
1414 1415 6.713903 TCAGATGATTGGAATTCATAAGGCTC 59.286 38.462 7.93 0.00 0.00 4.70
1415 1416 6.607970 TCAGATGATTGGAATTCATAAGGCT 58.392 36.000 7.93 0.00 0.00 4.58
1416 1417 6.713903 TCTCAGATGATTGGAATTCATAAGGC 59.286 38.462 7.93 0.25 0.00 4.35
1417 1418 7.174599 GGTCTCAGATGATTGGAATTCATAAGG 59.825 40.741 7.93 0.00 0.00 2.69
1418 1419 7.937942 AGGTCTCAGATGATTGGAATTCATAAG 59.062 37.037 7.93 0.00 0.00 1.73
1419 1420 7.809238 AGGTCTCAGATGATTGGAATTCATAA 58.191 34.615 7.93 2.34 0.00 1.90
1420 1421 7.384524 AGGTCTCAGATGATTGGAATTCATA 57.615 36.000 7.93 0.00 0.00 2.15
1421 1422 6.263412 AGGTCTCAGATGATTGGAATTCAT 57.737 37.500 7.93 0.00 0.00 2.57
1422 1423 5.678583 GAGGTCTCAGATGATTGGAATTCA 58.321 41.667 7.93 0.00 0.00 2.57
1423 1424 4.749099 CGAGGTCTCAGATGATTGGAATTC 59.251 45.833 0.00 0.00 0.00 2.17
1424 1425 4.406972 TCGAGGTCTCAGATGATTGGAATT 59.593 41.667 0.00 0.00 0.00 2.17
1425 1426 3.963374 TCGAGGTCTCAGATGATTGGAAT 59.037 43.478 0.00 0.00 0.00 3.01
1426 1427 3.365472 TCGAGGTCTCAGATGATTGGAA 58.635 45.455 0.00 0.00 0.00 3.53
1484 1485 9.476202 TGATTCTACACCAAGATAATATGAACG 57.524 33.333 0.00 0.00 0.00 3.95
1525 1529 6.162079 CCATCGAGCAGAGATATTACATGTT 58.838 40.000 2.30 0.00 0.00 2.71
1556 1560 1.134431 TGTTGCAGTTCACAGAGCAGA 60.134 47.619 0.00 0.00 38.35 4.26
1596 1600 4.732285 TGAATCTCTTGCAGTTCGTTTC 57.268 40.909 0.00 0.00 0.00 2.78
1615 1619 2.305635 AGGTGGCATACAGTTCACATGA 59.694 45.455 0.00 0.00 32.29 3.07
1616 1620 2.679837 GAGGTGGCATACAGTTCACATG 59.320 50.000 0.00 0.00 32.29 3.21
1629 1633 5.374921 GAGTACTACTATGTAGAGGTGGCA 58.625 45.833 11.17 0.00 0.00 4.92
1631 1635 5.938279 TGGAGTACTACTATGTAGAGGTGG 58.062 45.833 6.66 0.00 0.00 4.61
1662 1666 4.761235 AGAGTTCACATGAATTGCAGTG 57.239 40.909 0.00 0.00 36.33 3.66
1757 1761 9.599866 CTCCGTTGGCATTTTCTGATATATATA 57.400 33.333 0.00 0.00 0.00 0.86
1758 1762 7.554118 CCTCCGTTGGCATTTTCTGATATATAT 59.446 37.037 0.00 0.00 0.00 0.86
1810 1842 7.910441 AATCGCAATCTGGAAAAATGAAATT 57.090 28.000 0.00 0.00 38.98 1.82
1838 1871 9.915629 GTGTATGGGTGTTCACAAATAAATTTA 57.084 29.630 0.00 0.00 0.00 1.40
1848 1881 3.500448 ACATGTGTATGGGTGTTCACA 57.500 42.857 0.00 0.00 43.30 3.58
1849 1882 6.346096 AGTATACATGTGTATGGGTGTTCAC 58.654 40.000 9.11 3.88 41.03 3.18
1875 1908 5.690997 TGGCGTCAAATTTTACACATACA 57.309 34.783 3.57 0.00 0.00 2.29
1880 1913 7.968405 AGATTCTAATGGCGTCAAATTTTACAC 59.032 33.333 0.00 0.00 0.00 2.90
1881 1914 8.050778 AGATTCTAATGGCGTCAAATTTTACA 57.949 30.769 0.00 0.00 0.00 2.41
1886 1919 5.647658 TGTGAGATTCTAATGGCGTCAAATT 59.352 36.000 0.00 0.00 0.00 1.82
1887 1920 5.185454 TGTGAGATTCTAATGGCGTCAAAT 58.815 37.500 0.00 0.00 0.00 2.32
1888 1921 4.574892 TGTGAGATTCTAATGGCGTCAAA 58.425 39.130 0.00 0.00 0.00 2.69
1889 1922 4.200838 TGTGAGATTCTAATGGCGTCAA 57.799 40.909 0.00 0.00 0.00 3.18
1890 1923 3.885724 TGTGAGATTCTAATGGCGTCA 57.114 42.857 0.00 0.00 0.00 4.35
1891 1924 4.025396 CACATGTGAGATTCTAATGGCGTC 60.025 45.833 21.64 0.00 0.00 5.19
1892 1925 3.873361 CACATGTGAGATTCTAATGGCGT 59.127 43.478 21.64 0.00 0.00 5.68
1893 1926 3.249320 CCACATGTGAGATTCTAATGGCG 59.751 47.826 27.46 0.96 0.00 5.69
1894 1927 4.202441 ACCACATGTGAGATTCTAATGGC 58.798 43.478 27.46 0.00 0.00 4.40
1907 1940 6.502652 TGTCTTTTTGTATTCACCACATGTG 58.497 36.000 19.31 19.31 46.88 3.21
1908 1941 6.707440 TGTCTTTTTGTATTCACCACATGT 57.293 33.333 0.00 0.00 0.00 3.21
1909 1942 7.490725 TGTTTGTCTTTTTGTATTCACCACATG 59.509 33.333 0.00 0.00 0.00 3.21
1910 1943 7.491048 GTGTTTGTCTTTTTGTATTCACCACAT 59.509 33.333 0.00 0.00 0.00 3.21
1911 1944 6.809196 GTGTTTGTCTTTTTGTATTCACCACA 59.191 34.615 0.00 0.00 0.00 4.17
1912 1945 6.809196 TGTGTTTGTCTTTTTGTATTCACCAC 59.191 34.615 0.00 0.00 0.00 4.16
1913 1946 6.925211 TGTGTTTGTCTTTTTGTATTCACCA 58.075 32.000 0.00 0.00 0.00 4.17
1914 1947 8.419076 AATGTGTTTGTCTTTTTGTATTCACC 57.581 30.769 0.00 0.00 0.00 4.02
1921 1954 9.587461 CGTTTAAAAATGTGTTTGTCTTTTTGT 57.413 25.926 0.00 0.00 33.95 2.83
1922 1955 9.045772 CCGTTTAAAAATGTGTTTGTCTTTTTG 57.954 29.630 0.00 0.00 33.95 2.44
1923 1956 7.746916 GCCGTTTAAAAATGTGTTTGTCTTTTT 59.253 29.630 0.00 0.00 35.58 1.94
1924 1957 7.237871 GCCGTTTAAAAATGTGTTTGTCTTTT 58.762 30.769 0.00 0.00 0.00 2.27
1925 1958 6.183360 GGCCGTTTAAAAATGTGTTTGTCTTT 60.183 34.615 0.00 0.00 0.00 2.52
1926 1959 5.292345 GGCCGTTTAAAAATGTGTTTGTCTT 59.708 36.000 0.00 0.00 0.00 3.01
1927 1960 4.806775 GGCCGTTTAAAAATGTGTTTGTCT 59.193 37.500 0.00 0.00 0.00 3.41
1928 1961 4.806775 AGGCCGTTTAAAAATGTGTTTGTC 59.193 37.500 0.00 0.00 0.00 3.18
1929 1962 4.760878 AGGCCGTTTAAAAATGTGTTTGT 58.239 34.783 0.00 0.00 0.00 2.83
1930 1963 5.726729 AAGGCCGTTTAAAAATGTGTTTG 57.273 34.783 0.00 0.00 0.00 2.93
1931 1964 6.745159 AAAAGGCCGTTTAAAAATGTGTTT 57.255 29.167 15.49 0.00 0.00 2.83
1932 1965 6.745159 AAAAAGGCCGTTTAAAAATGTGTT 57.255 29.167 17.33 0.00 0.00 3.32
1952 1985 1.710816 AATCCGGCCCAACAGAAAAA 58.289 45.000 0.00 0.00 0.00 1.94
1953 1986 1.710816 AAATCCGGCCCAACAGAAAA 58.289 45.000 0.00 0.00 0.00 2.29
1954 1987 1.710816 AAAATCCGGCCCAACAGAAA 58.289 45.000 0.00 0.00 0.00 2.52
1955 1988 1.710816 AAAAATCCGGCCCAACAGAA 58.289 45.000 0.00 0.00 0.00 3.02
1956 1989 3.448469 AAAAATCCGGCCCAACAGA 57.552 47.368 0.00 0.00 0.00 3.41
2004 2037 9.798885 CAAAAGAACGTGTCAAATTTTGTTTAA 57.201 25.926 8.89 0.00 34.52 1.52
2005 2038 8.436200 CCAAAAGAACGTGTCAAATTTTGTTTA 58.564 29.630 8.89 0.00 36.42 2.01
2006 2039 7.171678 TCCAAAAGAACGTGTCAAATTTTGTTT 59.828 29.630 8.89 0.00 36.42 2.83
2007 2040 6.647067 TCCAAAAGAACGTGTCAAATTTTGTT 59.353 30.769 8.89 0.00 36.42 2.83
2008 2041 6.159988 TCCAAAAGAACGTGTCAAATTTTGT 58.840 32.000 8.89 0.00 36.42 2.83
2009 2042 6.639671 TCCAAAAGAACGTGTCAAATTTTG 57.360 33.333 2.59 2.59 37.37 2.44
2010 2043 7.056002 GTTCCAAAAGAACGTGTCAAATTTT 57.944 32.000 0.00 0.00 45.21 1.82
2011 2044 6.641176 GTTCCAAAAGAACGTGTCAAATTT 57.359 33.333 0.00 0.00 45.21 1.82
2026 2059 9.650539 CCATTGAAACATATATGTGTTCCAAAA 57.349 29.630 18.21 13.49 41.22 2.44
2027 2060 9.029368 TCCATTGAAACATATATGTGTTCCAAA 57.971 29.630 18.21 12.89 41.22 3.28
2028 2061 8.586879 TCCATTGAAACATATATGTGTTCCAA 57.413 30.769 16.98 16.98 41.22 3.53
2029 2062 8.765488 ATCCATTGAAACATATATGTGTTCCA 57.235 30.769 18.94 9.10 41.22 3.53
2093 2126 9.773328 CAGCTCGATATTTTGAAAACATAGAAA 57.227 29.630 0.00 0.00 0.00 2.52
2094 2127 7.910162 GCAGCTCGATATTTTGAAAACATAGAA 59.090 33.333 0.00 0.00 0.00 2.10
2095 2128 7.409697 GCAGCTCGATATTTTGAAAACATAGA 58.590 34.615 0.00 0.00 0.00 1.98
2096 2129 6.634436 GGCAGCTCGATATTTTGAAAACATAG 59.366 38.462 0.00 0.00 0.00 2.23
2097 2130 6.318648 AGGCAGCTCGATATTTTGAAAACATA 59.681 34.615 0.00 0.00 0.00 2.29
2098 2131 5.126061 AGGCAGCTCGATATTTTGAAAACAT 59.874 36.000 0.00 0.00 0.00 2.71
2099 2132 4.458989 AGGCAGCTCGATATTTTGAAAACA 59.541 37.500 0.00 0.00 0.00 2.83
2100 2133 4.795278 CAGGCAGCTCGATATTTTGAAAAC 59.205 41.667 0.00 0.00 0.00 2.43
2101 2134 4.142403 CCAGGCAGCTCGATATTTTGAAAA 60.142 41.667 0.00 0.00 0.00 2.29
2102 2135 3.378112 CCAGGCAGCTCGATATTTTGAAA 59.622 43.478 0.00 0.00 0.00 2.69
2103 2136 2.945008 CCAGGCAGCTCGATATTTTGAA 59.055 45.455 0.00 0.00 0.00 2.69
2104 2137 2.170397 TCCAGGCAGCTCGATATTTTGA 59.830 45.455 0.00 0.00 0.00 2.69
2105 2138 2.547211 CTCCAGGCAGCTCGATATTTTG 59.453 50.000 0.00 0.00 0.00 2.44
2106 2139 2.843701 CTCCAGGCAGCTCGATATTTT 58.156 47.619 0.00 0.00 0.00 1.82
2107 2140 1.542108 GCTCCAGGCAGCTCGATATTT 60.542 52.381 0.00 0.00 41.35 1.40
2108 2141 0.034616 GCTCCAGGCAGCTCGATATT 59.965 55.000 0.00 0.00 41.35 1.28
2109 2142 1.670590 GCTCCAGGCAGCTCGATAT 59.329 57.895 0.00 0.00 41.35 1.63
2110 2143 3.133014 GCTCCAGGCAGCTCGATA 58.867 61.111 0.00 0.00 41.35 2.92
2122 2155 2.469465 CTTTTGGAGGCCGAGCTCCA 62.469 60.000 8.47 7.35 46.84 3.86
2123 2156 1.746991 CTTTTGGAGGCCGAGCTCC 60.747 63.158 8.47 0.00 40.05 4.70
2124 2157 1.003233 ACTTTTGGAGGCCGAGCTC 60.003 57.895 2.73 2.73 0.00 4.09
2125 2158 1.003233 GACTTTTGGAGGCCGAGCT 60.003 57.895 0.00 0.00 0.00 4.09
2126 2159 2.391389 CGACTTTTGGAGGCCGAGC 61.391 63.158 0.00 0.00 0.00 5.03
2127 2160 1.004918 ACGACTTTTGGAGGCCGAG 60.005 57.895 0.00 0.00 32.37 4.63
2128 2161 1.005394 GACGACTTTTGGAGGCCGA 60.005 57.895 0.00 0.00 32.37 5.54
2129 2162 0.882927 TTGACGACTTTTGGAGGCCG 60.883 55.000 0.00 0.00 0.00 6.13
2130 2163 1.468914 GATTGACGACTTTTGGAGGCC 59.531 52.381 0.00 0.00 0.00 5.19
2131 2164 1.468914 GGATTGACGACTTTTGGAGGC 59.531 52.381 0.00 0.00 0.00 4.70
2132 2165 2.778299 TGGATTGACGACTTTTGGAGG 58.222 47.619 0.00 0.00 0.00 4.30
2133 2166 7.969536 ATATATGGATTGACGACTTTTGGAG 57.030 36.000 0.00 0.00 0.00 3.86
2165 2198 9.577222 GAAGTACTTCCTCTACTAATATGGAGT 57.423 37.037 22.74 0.00 33.64 3.85
2166 2199 9.802039 AGAAGTACTTCCTCTACTAATATGGAG 57.198 37.037 28.05 0.00 40.33 3.86
2176 2209 9.671279 GGGTAGATATAGAAGTACTTCCTCTAC 57.329 40.741 30.11 30.11 40.33 2.59
2177 2210 9.402786 TGGGTAGATATAGAAGTACTTCCTCTA 57.597 37.037 28.05 23.28 40.33 2.43
2178 2211 8.290463 TGGGTAGATATAGAAGTACTTCCTCT 57.710 38.462 28.05 24.09 40.33 3.69
2179 2212 9.536510 AATGGGTAGATATAGAAGTACTTCCTC 57.463 37.037 28.05 19.64 40.33 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.