Multiple sequence alignment - TraesCS2D01G586200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G586200 chr2D 100.000 2966 0 0 1 2966 644723762 644726727 0.000000e+00 5478.0
1 TraesCS2D01G586200 chr2B 87.908 1960 110 53 812 2675 790750015 790748087 0.000000e+00 2189.0
2 TraesCS2D01G586200 chr2B 89.873 158 15 1 2805 2962 134239312 134239156 5.010000e-48 202.0
3 TraesCS2D01G586200 chr2B 88.750 160 15 3 2806 2964 88231403 88231246 3.020000e-45 193.0
4 TraesCS2D01G586200 chr2B 91.304 69 5 1 713 781 664218220 664218287 3.150000e-15 93.5
5 TraesCS2D01G586200 chr2B 89.855 69 6 1 713 781 92488883 92488816 1.460000e-13 87.9
6 TraesCS2D01G586200 chr2B 85.057 87 11 2 713 798 296067411 296067496 1.460000e-13 87.9
7 TraesCS2D01G586200 chr2A 87.445 1816 96 54 713 2477 770016818 770018552 0.000000e+00 1969.0
8 TraesCS2D01G586200 chr2A 83.424 736 74 28 1 719 770015993 770016697 8.960000e-180 640.0
9 TraesCS2D01G586200 chr2A 91.667 72 5 1 710 781 296793863 296793933 6.770000e-17 99.0
10 TraesCS2D01G586200 chr6D 98.182 165 2 1 2802 2966 472679078 472678915 1.350000e-73 287.0
11 TraesCS2D01G586200 chr6D 87.264 212 15 4 1985 2187 86128141 86128349 6.390000e-57 231.0
12 TraesCS2D01G586200 chr3D 98.148 162 3 0 2805 2966 456019491 456019330 1.740000e-72 283.0
13 TraesCS2D01G586200 chr5D 92.547 161 12 0 2806 2966 24041264 24041104 6.390000e-57 231.0
14 TraesCS2D01G586200 chr5D 88.199 161 17 2 2804 2964 113489693 113489851 1.090000e-44 191.0
15 TraesCS2D01G586200 chr5B 90.683 161 15 0 2804 2964 665188922 665189082 6.440000e-52 215.0
16 TraesCS2D01G586200 chr7A 90.000 160 14 2 2806 2964 733266702 733266860 3.880000e-49 206.0
17 TraesCS2D01G586200 chr3B 88.199 161 17 1 2806 2964 780748075 780747915 1.090000e-44 191.0
18 TraesCS2D01G586200 chr6B 89.474 76 6 2 713 787 647267601 647267675 8.750000e-16 95.3
19 TraesCS2D01G586200 chr6B 91.304 69 5 1 713 781 153395910 153395977 3.150000e-15 93.5
20 TraesCS2D01G586200 chr1B 91.304 69 5 1 713 781 491705761 491705694 3.150000e-15 93.5
21 TraesCS2D01G586200 chr1A 91.304 69 5 1 713 781 137739684 137739751 3.150000e-15 93.5
22 TraesCS2D01G586200 chr5A 87.342 79 8 2 713 791 607743302 607743378 4.070000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G586200 chr2D 644723762 644726727 2965 False 5478.0 5478 100.0000 1 2966 1 chr2D.!!$F1 2965
1 TraesCS2D01G586200 chr2B 790748087 790750015 1928 True 2189.0 2189 87.9080 812 2675 1 chr2B.!!$R4 1863
2 TraesCS2D01G586200 chr2A 770015993 770018552 2559 False 1304.5 1969 85.4345 1 2477 2 chr2A.!!$F2 2476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 566 0.328258 ACCGCTAAAATGGGTCAGCT 59.672 50.000 0.00 0.0 31.74 4.24 F
783 928 1.064166 AGTAATTCCGGACGGAGGAGA 60.064 52.381 13.64 0.0 46.06 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1865 0.608130 TGCGTGCTTACTCAGGTGAT 59.392 50.0 0.00 0.00 0.00 3.06 R
2728 3012 0.040157 CACTGTCCACGTTGGCAATG 60.040 55.0 17.61 17.61 37.47 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 194 9.753669 AAACATGATTTTTGAAAAACTTCGAAC 57.246 25.926 5.08 0.00 0.00 3.95
476 486 2.821437 TGGTTCAGGGACCTTCTAGAG 58.179 52.381 0.00 0.00 40.47 2.43
518 528 3.538634 ACCAGCCGAGGTTCTTATAAC 57.461 47.619 0.00 0.00 39.34 1.89
519 529 2.169978 ACCAGCCGAGGTTCTTATAACC 59.830 50.000 0.00 0.00 39.34 2.85
520 530 2.470821 CAGCCGAGGTTCTTATAACCG 58.529 52.381 1.46 0.00 44.82 4.44
521 531 1.411612 AGCCGAGGTTCTTATAACCGG 59.588 52.381 0.00 0.00 44.82 5.28
522 532 1.410153 GCCGAGGTTCTTATAACCGGA 59.590 52.381 9.46 0.00 44.82 5.14
523 533 2.159057 GCCGAGGTTCTTATAACCGGAA 60.159 50.000 9.46 0.00 44.82 4.30
524 534 3.679639 GCCGAGGTTCTTATAACCGGAAA 60.680 47.826 9.46 0.00 44.82 3.13
525 535 3.867493 CCGAGGTTCTTATAACCGGAAAC 59.133 47.826 9.46 0.00 44.82 2.78
528 538 5.163923 CGAGGTTCTTATAACCGGAAACAAC 60.164 44.000 9.46 1.04 44.82 3.32
550 560 0.817013 ATGCACACCGCTAAAATGGG 59.183 50.000 0.00 0.00 43.06 4.00
556 566 0.328258 ACCGCTAAAATGGGTCAGCT 59.672 50.000 0.00 0.00 31.74 4.24
584 594 4.830600 TGCTCAATATGTCGACCATACCTA 59.169 41.667 14.12 0.00 38.83 3.08
634 652 4.273318 AGCATCACATAGGGTTTTTCCTC 58.727 43.478 0.00 0.00 38.30 3.71
762 907 9.836076 CGTTTAGATATATCCATTTCTACGACA 57.164 33.333 9.18 0.00 31.37 4.35
775 920 4.361451 TCTACGACAAGTAATTCCGGAC 57.639 45.455 1.83 0.00 34.45 4.79
783 928 1.064166 AGTAATTCCGGACGGAGGAGA 60.064 52.381 13.64 0.00 46.06 3.71
801 946 4.338400 AGGAGAACAGTACAAGGCAAAAAC 59.662 41.667 0.00 0.00 0.00 2.43
806 951 3.004315 ACAGTACAAGGCAAAAACATCCG 59.996 43.478 0.00 0.00 0.00 4.18
872 1017 3.054948 CCAAATCAATCCCAGCCACAAAT 60.055 43.478 0.00 0.00 0.00 2.32
884 1029 4.946157 CCAGCCACAAATGTAGATCTTCTT 59.054 41.667 0.00 0.00 0.00 2.52
885 1030 5.163683 CCAGCCACAAATGTAGATCTTCTTG 60.164 44.000 0.00 0.04 0.00 3.02
898 1043 5.258051 AGATCTTCTTGTACCTTCTCTCGT 58.742 41.667 0.00 0.00 0.00 4.18
899 1044 5.355910 AGATCTTCTTGTACCTTCTCTCGTC 59.644 44.000 0.00 0.00 0.00 4.20
909 1054 5.786264 ACCTTCTCTCGTCAGACTTTTTA 57.214 39.130 0.00 0.00 0.00 1.52
911 1056 7.463961 ACCTTCTCTCGTCAGACTTTTTATA 57.536 36.000 0.00 0.00 0.00 0.98
917 1062 9.627395 TCTCTCGTCAGACTTTTTATAAAAGAG 57.373 33.333 16.38 12.46 0.00 2.85
1029 1174 4.364686 TTCCTCCCCCTCCCCACC 62.365 72.222 0.00 0.00 0.00 4.61
1098 1246 2.933834 ACCCTCCCCTTCCCAACG 60.934 66.667 0.00 0.00 0.00 4.10
1099 1247 2.609610 CCCTCCCCTTCCCAACGA 60.610 66.667 0.00 0.00 0.00 3.85
1175 1329 4.070552 GAGCAACGAGGAGGGCGT 62.071 66.667 0.00 0.00 44.94 5.68
1236 1396 1.152839 CGAGGAGGAGGAGGAGGAC 60.153 68.421 0.00 0.00 0.00 3.85
1456 1616 1.557443 CCTCAAGCACAACGTCCGTC 61.557 60.000 0.00 0.00 0.00 4.79
1458 1618 2.280592 AAGCACAACGTCCGTCCC 60.281 61.111 0.00 0.00 0.00 4.46
1459 1619 3.819877 AAGCACAACGTCCGTCCCC 62.820 63.158 0.00 0.00 0.00 4.81
1460 1620 4.309950 GCACAACGTCCGTCCCCT 62.310 66.667 0.00 0.00 0.00 4.79
1463 1623 4.078516 CAACGTCCGTCCCCTCCC 62.079 72.222 0.00 0.00 0.00 4.30
1662 1835 4.410400 GCCACCCGGGACAAGGAG 62.410 72.222 32.02 8.12 40.01 3.69
1692 1865 1.240641 CCGCCATTGCCAAGTACACA 61.241 55.000 0.00 0.00 0.00 3.72
1701 1874 2.289631 TGCCAAGTACACATCACCTGAG 60.290 50.000 0.00 0.00 0.00 3.35
1702 1875 2.289694 GCCAAGTACACATCACCTGAGT 60.290 50.000 0.00 0.00 33.02 3.41
1704 1877 4.562757 GCCAAGTACACATCACCTGAGTAA 60.563 45.833 0.00 0.00 33.51 2.24
1705 1878 5.171476 CCAAGTACACATCACCTGAGTAAG 58.829 45.833 0.00 0.00 33.51 2.34
1706 1879 4.457834 AGTACACATCACCTGAGTAAGC 57.542 45.455 0.00 0.00 33.51 3.09
1708 1881 3.045601 ACACATCACCTGAGTAAGCAC 57.954 47.619 0.00 0.00 0.00 4.40
1722 1904 4.741781 GCACGCATCACACGCACC 62.742 66.667 0.00 0.00 0.00 5.01
1731 1913 2.481289 TCACACGCACCAATCCATTA 57.519 45.000 0.00 0.00 0.00 1.90
1786 1968 4.273235 TGATAAATCGCCTACACATGCTTG 59.727 41.667 0.00 0.00 0.00 4.01
1864 2073 5.121811 ACACATGAATCTGCTCCTATGAAC 58.878 41.667 0.00 0.00 0.00 3.18
1922 2131 7.122715 ACAGTCTACCTGAAGATCTCTGTATT 58.877 38.462 0.00 0.00 44.49 1.89
1927 2136 4.410555 ACCTGAAGATCTCTGTATTTCCCC 59.589 45.833 0.00 0.00 0.00 4.81
2081 2338 3.181455 GCAGGAAAAACTGGGATTGGTTT 60.181 43.478 0.00 0.00 38.90 3.27
2098 2355 9.249457 GGATTGGTTTTTATAATAAAGCAGAGC 57.751 33.333 16.82 13.14 42.01 4.09
2180 2448 4.402155 GGTTGATTACTCAATGCCATTCCA 59.598 41.667 0.00 0.00 43.08 3.53
2214 2482 3.574614 CCCCGTTGCAAAATTTCAGTAG 58.425 45.455 0.00 0.00 0.00 2.57
2284 2560 9.877178 CCTAAAACAGAGTTCTATTCTATGTGT 57.123 33.333 0.00 0.00 37.42 3.72
2448 2732 0.331616 ACCCCCATGGACAAACTAGC 59.668 55.000 15.22 0.00 38.00 3.42
2477 2761 5.474578 AGAATGCTTCAACAGAGTCACTA 57.525 39.130 0.00 0.00 0.00 2.74
2533 2817 9.856162 TTAAATAACAGTTTTAGGAAGGAGTGT 57.144 29.630 0.00 0.00 0.00 3.55
2556 2840 3.876914 GGCTATTGCACATGTAGCACTAA 59.123 43.478 18.50 8.41 42.54 2.24
2575 2859 6.349611 GCACTAATGGACATGATGTTTTGAGT 60.350 38.462 0.00 0.00 0.00 3.41
2580 2864 5.072055 TGGACATGATGTTTTGAGTGACAT 58.928 37.500 0.00 0.00 39.09 3.06
2624 2908 1.517257 GTCGTGAGGATGAGCGTGG 60.517 63.158 0.00 0.00 0.00 4.94
2675 2959 0.987294 CCACCCTGACCTTGTCATCT 59.013 55.000 0.00 0.00 41.94 2.90
2676 2960 1.065854 CCACCCTGACCTTGTCATCTC 60.066 57.143 0.00 0.00 41.94 2.75
2677 2961 1.905215 CACCCTGACCTTGTCATCTCT 59.095 52.381 0.00 0.00 41.94 3.10
2678 2962 1.905215 ACCCTGACCTTGTCATCTCTG 59.095 52.381 0.00 0.00 41.94 3.35
2679 2963 1.209019 CCCTGACCTTGTCATCTCTGG 59.791 57.143 0.00 0.00 41.94 3.86
2680 2964 1.905215 CCTGACCTTGTCATCTCTGGT 59.095 52.381 0.00 0.00 41.94 4.00
2681 2965 3.099905 CCTGACCTTGTCATCTCTGGTA 58.900 50.000 0.00 0.00 41.94 3.25
2682 2966 3.131933 CCTGACCTTGTCATCTCTGGTAG 59.868 52.174 0.00 0.00 41.94 3.18
2683 2967 4.019858 CTGACCTTGTCATCTCTGGTAGA 58.980 47.826 0.00 0.00 41.94 2.59
2684 2968 4.614475 TGACCTTGTCATCTCTGGTAGAT 58.386 43.478 0.00 0.00 46.36 1.98
2685 2969 5.766590 TGACCTTGTCATCTCTGGTAGATA 58.233 41.667 0.00 0.00 43.42 1.98
2686 2970 6.377080 TGACCTTGTCATCTCTGGTAGATAT 58.623 40.000 0.00 0.00 43.42 1.63
2687 2971 7.526918 TGACCTTGTCATCTCTGGTAGATATA 58.473 38.462 0.00 0.00 43.42 0.86
2688 2972 7.448777 TGACCTTGTCATCTCTGGTAGATATAC 59.551 40.741 0.00 0.00 43.42 1.47
2689 2973 7.298374 ACCTTGTCATCTCTGGTAGATATACA 58.702 38.462 0.00 0.00 43.42 2.29
2690 2974 7.785028 ACCTTGTCATCTCTGGTAGATATACAA 59.215 37.037 0.00 11.50 43.42 2.41
2691 2975 8.085296 CCTTGTCATCTCTGGTAGATATACAAC 58.915 40.741 0.00 0.00 43.42 3.32
2692 2976 7.526142 TGTCATCTCTGGTAGATATACAACC 57.474 40.000 0.00 0.00 43.42 3.77
2693 2977 7.066781 TGTCATCTCTGGTAGATATACAACCA 58.933 38.462 0.00 3.90 43.42 3.67
2694 2978 7.231519 TGTCATCTCTGGTAGATATACAACCAG 59.768 40.741 18.32 18.32 43.42 4.00
2695 2979 6.721668 TCATCTCTGGTAGATATACAACCAGG 59.278 42.308 21.67 15.53 43.42 4.45
2696 2980 6.275692 TCTCTGGTAGATATACAACCAGGA 57.724 41.667 21.67 16.86 45.75 3.86
2697 2981 6.864421 TCTCTGGTAGATATACAACCAGGAT 58.136 40.000 21.67 0.00 45.75 3.24
2698 2982 7.306013 TCTCTGGTAGATATACAACCAGGATT 58.694 38.462 21.67 0.00 45.75 3.01
2699 2983 8.453681 TCTCTGGTAGATATACAACCAGGATTA 58.546 37.037 21.67 8.90 45.75 1.75
2700 2984 8.418597 TCTGGTAGATATACAACCAGGATTAC 57.581 38.462 21.67 0.00 45.75 1.89
2701 2985 8.232412 TCTGGTAGATATACAACCAGGATTACT 58.768 37.037 21.67 0.00 45.75 2.24
2702 2986 9.529823 CTGGTAGATATACAACCAGGATTACTA 57.470 37.037 17.27 0.00 42.97 1.82
2703 2987 9.886337 TGGTAGATATACAACCAGGATTACTAA 57.114 33.333 0.00 0.00 0.00 2.24
2706 2990 7.893658 AGATATACAACCAGGATTACTAACCG 58.106 38.462 0.00 0.00 0.00 4.44
2707 2991 3.622166 ACAACCAGGATTACTAACCGG 57.378 47.619 0.00 0.00 0.00 5.28
2708 2992 2.237893 ACAACCAGGATTACTAACCGGG 59.762 50.000 6.32 0.00 44.77 5.73
2709 2993 0.835276 ACCAGGATTACTAACCGGGC 59.165 55.000 6.32 0.00 43.45 6.13
2710 2994 0.834612 CCAGGATTACTAACCGGGCA 59.165 55.000 6.32 0.00 35.09 5.36
2711 2995 1.420138 CCAGGATTACTAACCGGGCAT 59.580 52.381 6.32 0.00 35.09 4.40
2712 2996 2.550208 CCAGGATTACTAACCGGGCATC 60.550 54.545 6.32 0.00 35.09 3.91
2713 2997 1.697982 AGGATTACTAACCGGGCATCC 59.302 52.381 6.32 7.04 0.00 3.51
2714 2998 1.418637 GGATTACTAACCGGGCATCCA 59.581 52.381 6.32 0.00 31.99 3.41
2715 2999 2.490991 GATTACTAACCGGGCATCCAC 58.509 52.381 6.32 0.00 0.00 4.02
2716 3000 0.176219 TTACTAACCGGGCATCCACG 59.824 55.000 6.32 0.00 0.00 4.94
2717 3001 0.683828 TACTAACCGGGCATCCACGA 60.684 55.000 6.32 0.00 0.00 4.35
2718 3002 1.335132 ACTAACCGGGCATCCACGAT 61.335 55.000 6.32 0.00 0.00 3.73
2719 3003 0.179056 CTAACCGGGCATCCACGATT 60.179 55.000 6.32 0.00 0.00 3.34
2720 3004 0.462937 TAACCGGGCATCCACGATTG 60.463 55.000 6.32 0.00 0.00 2.67
2721 3005 3.585990 CCGGGCATCCACGATTGC 61.586 66.667 0.00 0.00 0.00 3.56
2722 3006 3.585990 CGGGCATCCACGATTGCC 61.586 66.667 5.38 5.38 45.99 4.52
2724 3008 2.513666 GGCATCCACGATTGCCGA 60.514 61.111 0.00 0.00 41.76 5.54
2725 3009 2.112198 GGCATCCACGATTGCCGAA 61.112 57.895 0.00 0.00 41.76 4.30
2726 3010 1.447317 GGCATCCACGATTGCCGAAT 61.447 55.000 0.00 0.00 41.76 3.34
2727 3011 0.381801 GCATCCACGATTGCCGAATT 59.618 50.000 0.00 0.00 41.76 2.17
2728 3012 1.597937 GCATCCACGATTGCCGAATTC 60.598 52.381 0.00 0.00 41.76 2.17
2729 3013 1.670295 CATCCACGATTGCCGAATTCA 59.330 47.619 6.22 0.00 41.76 2.57
2730 3014 2.036958 TCCACGATTGCCGAATTCAT 57.963 45.000 6.22 0.00 41.76 2.57
2731 3015 2.364632 TCCACGATTGCCGAATTCATT 58.635 42.857 6.22 0.00 41.76 2.57
2732 3016 2.097304 TCCACGATTGCCGAATTCATTG 59.903 45.455 6.22 0.00 41.76 2.82
2733 3017 1.847999 CACGATTGCCGAATTCATTGC 59.152 47.619 6.22 5.52 41.76 3.56
2734 3018 1.202290 ACGATTGCCGAATTCATTGCC 60.202 47.619 6.22 0.00 41.76 4.52
2735 3019 1.202279 CGATTGCCGAATTCATTGCCA 60.202 47.619 6.22 0.00 41.76 4.92
2736 3020 2.734809 CGATTGCCGAATTCATTGCCAA 60.735 45.455 6.22 1.58 41.76 4.52
2737 3021 2.077413 TTGCCGAATTCATTGCCAAC 57.923 45.000 6.22 0.00 0.00 3.77
2738 3022 0.109365 TGCCGAATTCATTGCCAACG 60.109 50.000 6.22 0.00 0.00 4.10
2739 3023 0.109319 GCCGAATTCATTGCCAACGT 60.109 50.000 6.22 0.00 0.00 3.99
2740 3024 1.616620 CCGAATTCATTGCCAACGTG 58.383 50.000 6.22 0.00 0.00 4.49
2741 3025 1.616620 CGAATTCATTGCCAACGTGG 58.383 50.000 6.22 0.00 41.55 4.94
2742 3026 1.198867 CGAATTCATTGCCAACGTGGA 59.801 47.619 6.22 0.00 40.96 4.02
2743 3027 2.595386 GAATTCATTGCCAACGTGGAC 58.405 47.619 0.00 0.00 40.96 4.02
2744 3028 1.614996 ATTCATTGCCAACGTGGACA 58.385 45.000 8.04 0.00 40.96 4.02
2745 3029 0.950836 TTCATTGCCAACGTGGACAG 59.049 50.000 8.04 0.00 40.96 3.51
2746 3030 0.179032 TCATTGCCAACGTGGACAGT 60.179 50.000 8.04 0.00 40.96 3.55
2747 3031 0.040157 CATTGCCAACGTGGACAGTG 60.040 55.000 8.04 0.00 40.96 3.66
2748 3032 0.465460 ATTGCCAACGTGGACAGTGT 60.465 50.000 0.00 0.00 40.96 3.55
2749 3033 0.178301 TTGCCAACGTGGACAGTGTA 59.822 50.000 0.00 0.00 40.96 2.90
2750 3034 0.394938 TGCCAACGTGGACAGTGTAT 59.605 50.000 0.00 0.00 40.96 2.29
2751 3035 1.202710 TGCCAACGTGGACAGTGTATT 60.203 47.619 0.00 0.00 40.96 1.89
2752 3036 1.196808 GCCAACGTGGACAGTGTATTG 59.803 52.381 0.00 0.00 40.96 1.90
2753 3037 2.489971 CCAACGTGGACAGTGTATTGT 58.510 47.619 0.00 0.00 40.96 2.71
2754 3038 2.223144 CCAACGTGGACAGTGTATTGTG 59.777 50.000 0.00 0.00 40.96 3.33
2755 3039 1.508632 ACGTGGACAGTGTATTGTGC 58.491 50.000 0.00 0.00 39.55 4.57
2756 3040 0.796312 CGTGGACAGTGTATTGTGCC 59.204 55.000 0.00 0.00 38.48 5.01
2757 3041 1.165270 GTGGACAGTGTATTGTGCCC 58.835 55.000 0.00 0.00 38.48 5.36
2758 3042 0.767998 TGGACAGTGTATTGTGCCCA 59.232 50.000 0.00 0.00 38.48 5.36
2759 3043 1.165270 GGACAGTGTATTGTGCCCAC 58.835 55.000 0.00 0.00 33.80 4.61
2760 3044 1.271379 GGACAGTGTATTGTGCCCACT 60.271 52.381 0.00 0.00 39.93 4.00
2762 3046 1.896220 CAGTGTATTGTGCCCACTGT 58.104 50.000 10.11 0.00 46.88 3.55
2763 3047 2.229792 CAGTGTATTGTGCCCACTGTT 58.770 47.619 10.11 0.00 46.88 3.16
2764 3048 2.226437 CAGTGTATTGTGCCCACTGTTC 59.774 50.000 10.11 0.00 46.88 3.18
2765 3049 2.106511 AGTGTATTGTGCCCACTGTTCT 59.893 45.455 0.00 0.00 38.00 3.01
2766 3050 2.484264 GTGTATTGTGCCCACTGTTCTC 59.516 50.000 0.00 0.00 0.00 2.87
2767 3051 2.371841 TGTATTGTGCCCACTGTTCTCT 59.628 45.455 0.00 0.00 0.00 3.10
2768 3052 3.580895 TGTATTGTGCCCACTGTTCTCTA 59.419 43.478 0.00 0.00 0.00 2.43
2769 3053 2.543777 TTGTGCCCACTGTTCTCTAC 57.456 50.000 0.00 0.00 0.00 2.59
2770 3054 1.717032 TGTGCCCACTGTTCTCTACT 58.283 50.000 0.00 0.00 0.00 2.57
2771 3055 2.047061 TGTGCCCACTGTTCTCTACTT 58.953 47.619 0.00 0.00 0.00 2.24
2772 3056 2.037251 TGTGCCCACTGTTCTCTACTTC 59.963 50.000 0.00 0.00 0.00 3.01
2773 3057 2.300437 GTGCCCACTGTTCTCTACTTCT 59.700 50.000 0.00 0.00 0.00 2.85
2774 3058 3.510360 GTGCCCACTGTTCTCTACTTCTA 59.490 47.826 0.00 0.00 0.00 2.10
2775 3059 3.510360 TGCCCACTGTTCTCTACTTCTAC 59.490 47.826 0.00 0.00 0.00 2.59
2776 3060 3.427773 GCCCACTGTTCTCTACTTCTACG 60.428 52.174 0.00 0.00 0.00 3.51
2777 3061 4.008330 CCCACTGTTCTCTACTTCTACGA 58.992 47.826 0.00 0.00 0.00 3.43
2778 3062 4.142643 CCCACTGTTCTCTACTTCTACGAC 60.143 50.000 0.00 0.00 0.00 4.34
2779 3063 4.454847 CCACTGTTCTCTACTTCTACGACA 59.545 45.833 0.00 0.00 0.00 4.35
2780 3064 5.048921 CCACTGTTCTCTACTTCTACGACAA 60.049 44.000 0.00 0.00 0.00 3.18
2781 3065 5.852229 CACTGTTCTCTACTTCTACGACAAC 59.148 44.000 0.00 0.00 0.00 3.32
2782 3066 5.764192 ACTGTTCTCTACTTCTACGACAACT 59.236 40.000 0.00 0.00 0.00 3.16
2783 3067 6.933521 ACTGTTCTCTACTTCTACGACAACTA 59.066 38.462 0.00 0.00 0.00 2.24
2784 3068 7.095271 ACTGTTCTCTACTTCTACGACAACTAC 60.095 40.741 0.00 0.00 0.00 2.73
2785 3069 6.148480 TGTTCTCTACTTCTACGACAACTACC 59.852 42.308 0.00 0.00 0.00 3.18
2786 3070 5.798132 TCTCTACTTCTACGACAACTACCA 58.202 41.667 0.00 0.00 0.00 3.25
2787 3071 6.413052 TCTCTACTTCTACGACAACTACCAT 58.587 40.000 0.00 0.00 0.00 3.55
2788 3072 6.883217 TCTCTACTTCTACGACAACTACCATT 59.117 38.462 0.00 0.00 0.00 3.16
2789 3073 8.043113 TCTCTACTTCTACGACAACTACCATTA 58.957 37.037 0.00 0.00 0.00 1.90
2790 3074 8.743085 TCTACTTCTACGACAACTACCATTAT 57.257 34.615 0.00 0.00 0.00 1.28
2791 3075 8.618677 TCTACTTCTACGACAACTACCATTATG 58.381 37.037 0.00 0.00 0.00 1.90
2792 3076 7.166691 ACTTCTACGACAACTACCATTATGT 57.833 36.000 0.00 0.00 0.00 2.29
2793 3077 7.609056 ACTTCTACGACAACTACCATTATGTT 58.391 34.615 0.00 0.00 0.00 2.71
2794 3078 7.544566 ACTTCTACGACAACTACCATTATGTTG 59.455 37.037 0.00 0.00 44.44 3.33
2795 3079 6.334989 TCTACGACAACTACCATTATGTTGG 58.665 40.000 9.39 0.00 43.54 3.77
2796 3080 5.155278 ACGACAACTACCATTATGTTGGA 57.845 39.130 9.39 0.00 43.54 3.53
2797 3081 5.741011 ACGACAACTACCATTATGTTGGAT 58.259 37.500 9.39 0.00 43.54 3.41
2798 3082 6.880484 ACGACAACTACCATTATGTTGGATA 58.120 36.000 9.39 0.00 43.54 2.59
2799 3083 7.332557 ACGACAACTACCATTATGTTGGATAA 58.667 34.615 9.39 0.00 43.54 1.75
2800 3084 7.494625 ACGACAACTACCATTATGTTGGATAAG 59.505 37.037 9.39 1.13 43.54 1.73
2801 3085 7.494625 CGACAACTACCATTATGTTGGATAAGT 59.505 37.037 9.39 1.63 43.54 2.24
2802 3086 9.174166 GACAACTACCATTATGTTGGATAAGTT 57.826 33.333 9.39 6.47 43.54 2.66
2803 3087 9.528489 ACAACTACCATTATGTTGGATAAGTTT 57.472 29.630 9.39 0.80 43.54 2.66
2816 3100 9.290988 TGTTGGATAAGTTTAGAGTAAATTGCA 57.709 29.630 0.00 0.00 0.00 4.08
2817 3101 9.556030 GTTGGATAAGTTTAGAGTAAATTGCAC 57.444 33.333 0.00 0.00 0.00 4.57
2818 3102 8.856153 TGGATAAGTTTAGAGTAAATTGCACA 57.144 30.769 0.00 0.00 0.00 4.57
2819 3103 9.290988 TGGATAAGTTTAGAGTAAATTGCACAA 57.709 29.630 0.00 0.00 0.00 3.33
2823 3107 8.642908 AAGTTTAGAGTAAATTGCACAAAACC 57.357 30.769 0.00 0.00 0.00 3.27
2824 3108 7.777095 AGTTTAGAGTAAATTGCACAAAACCA 58.223 30.769 0.00 0.00 0.00 3.67
2825 3109 7.704899 AGTTTAGAGTAAATTGCACAAAACCAC 59.295 33.333 0.00 0.00 0.00 4.16
2826 3110 4.944048 AGAGTAAATTGCACAAAACCACC 58.056 39.130 0.00 0.00 0.00 4.61
2827 3111 4.404073 AGAGTAAATTGCACAAAACCACCA 59.596 37.500 0.00 0.00 0.00 4.17
2828 3112 4.438148 AGTAAATTGCACAAAACCACCAC 58.562 39.130 0.00 0.00 0.00 4.16
2829 3113 3.625649 AAATTGCACAAAACCACCACT 57.374 38.095 0.00 0.00 0.00 4.00
2830 3114 3.625649 AATTGCACAAAACCACCACTT 57.374 38.095 0.00 0.00 0.00 3.16
2831 3115 3.625649 ATTGCACAAAACCACCACTTT 57.374 38.095 0.00 0.00 0.00 2.66
2832 3116 2.376808 TGCACAAAACCACCACTTTG 57.623 45.000 0.00 0.00 38.29 2.77
2833 3117 1.895798 TGCACAAAACCACCACTTTGA 59.104 42.857 1.80 0.00 36.30 2.69
2834 3118 2.094286 TGCACAAAACCACCACTTTGAG 60.094 45.455 1.80 0.00 36.30 3.02
2835 3119 2.165437 GCACAAAACCACCACTTTGAGA 59.835 45.455 1.80 0.00 36.30 3.27
2836 3120 3.734902 GCACAAAACCACCACTTTGAGAG 60.735 47.826 1.80 0.00 36.30 3.20
2837 3121 2.427095 ACAAAACCACCACTTTGAGAGC 59.573 45.455 1.80 0.00 36.30 4.09
2838 3122 2.689983 CAAAACCACCACTTTGAGAGCT 59.310 45.455 0.00 0.00 35.03 4.09
2839 3123 3.857157 AAACCACCACTTTGAGAGCTA 57.143 42.857 0.00 0.00 0.00 3.32
2840 3124 3.409026 AACCACCACTTTGAGAGCTAG 57.591 47.619 0.00 0.00 0.00 3.42
2841 3125 1.625818 ACCACCACTTTGAGAGCTAGG 59.374 52.381 0.00 0.00 0.00 3.02
2842 3126 1.625818 CCACCACTTTGAGAGCTAGGT 59.374 52.381 0.00 0.00 0.00 3.08
2843 3127 2.039084 CCACCACTTTGAGAGCTAGGTT 59.961 50.000 0.00 0.00 0.00 3.50
2844 3128 3.496870 CCACCACTTTGAGAGCTAGGTTT 60.497 47.826 0.00 0.00 0.00 3.27
2845 3129 3.499918 CACCACTTTGAGAGCTAGGTTTG 59.500 47.826 0.00 0.00 0.00 2.93
2846 3130 2.485814 CCACTTTGAGAGCTAGGTTTGC 59.514 50.000 0.00 0.00 0.00 3.68
2847 3131 3.141398 CACTTTGAGAGCTAGGTTTGCA 58.859 45.455 0.00 0.00 0.00 4.08
2848 3132 3.188048 CACTTTGAGAGCTAGGTTTGCAG 59.812 47.826 0.00 0.00 0.00 4.41
2849 3133 3.071602 ACTTTGAGAGCTAGGTTTGCAGA 59.928 43.478 0.00 0.00 0.00 4.26
2850 3134 3.769739 TTGAGAGCTAGGTTTGCAGAA 57.230 42.857 0.00 0.00 0.00 3.02
2851 3135 3.769739 TGAGAGCTAGGTTTGCAGAAA 57.230 42.857 0.00 0.00 0.00 2.52
2852 3136 4.085357 TGAGAGCTAGGTTTGCAGAAAA 57.915 40.909 0.00 0.00 0.00 2.29
2853 3137 3.815401 TGAGAGCTAGGTTTGCAGAAAAC 59.185 43.478 0.00 0.00 46.32 2.43
2864 3148 5.561993 GTTTGCAGAAAACACTACGTTACA 58.438 37.500 0.00 0.00 46.30 2.41
2865 3149 5.994887 TTGCAGAAAACACTACGTTACAT 57.005 34.783 0.00 0.00 36.59 2.29
2866 3150 5.994887 TGCAGAAAACACTACGTTACATT 57.005 34.783 0.00 0.00 36.59 2.71
2867 3151 6.366315 TGCAGAAAACACTACGTTACATTT 57.634 33.333 0.00 0.00 36.59 2.32
2868 3152 6.787225 TGCAGAAAACACTACGTTACATTTT 58.213 32.000 0.00 0.00 36.59 1.82
2869 3153 6.908284 TGCAGAAAACACTACGTTACATTTTC 59.092 34.615 14.80 14.80 36.59 2.29
2870 3154 6.084551 GCAGAAAACACTACGTTACATTTTCG 59.915 38.462 15.83 13.22 39.74 3.46
2871 3155 7.121272 CAGAAAACACTACGTTACATTTTCGT 58.879 34.615 15.83 0.00 39.74 3.85
2872 3156 7.109668 CAGAAAACACTACGTTACATTTTCGTG 59.890 37.037 15.83 12.51 39.74 4.35
2873 3157 6.586868 AAACACTACGTTACATTTTCGTGA 57.413 33.333 0.00 0.00 36.59 4.35
2874 3158 5.565723 ACACTACGTTACATTTTCGTGAC 57.434 39.130 0.00 0.00 38.27 3.67
2875 3159 5.042593 ACACTACGTTACATTTTCGTGACA 58.957 37.500 0.00 0.00 38.27 3.58
2876 3160 5.174398 ACACTACGTTACATTTTCGTGACAG 59.826 40.000 0.00 0.00 38.27 3.51
2877 3161 5.400188 CACTACGTTACATTTTCGTGACAGA 59.600 40.000 0.00 0.00 38.27 3.41
2878 3162 5.978919 ACTACGTTACATTTTCGTGACAGAA 59.021 36.000 0.00 0.00 38.27 3.02
2879 3163 5.721876 ACGTTACATTTTCGTGACAGAAA 57.278 34.783 0.00 0.00 38.23 2.52
2880 3164 5.734311 ACGTTACATTTTCGTGACAGAAAG 58.266 37.500 3.67 0.00 40.66 2.62
2881 3165 4.607235 CGTTACATTTTCGTGACAGAAAGC 59.393 41.667 3.67 0.00 40.66 3.51
2882 3166 5.507077 GTTACATTTTCGTGACAGAAAGCA 58.493 37.500 3.67 0.00 40.66 3.91
2883 3167 3.952535 ACATTTTCGTGACAGAAAGCAC 58.047 40.909 3.67 0.00 40.66 4.40
2884 3168 3.243068 ACATTTTCGTGACAGAAAGCACC 60.243 43.478 0.00 0.00 40.66 5.01
2885 3169 2.031258 TTTCGTGACAGAAAGCACCA 57.969 45.000 0.00 0.00 35.44 4.17
2886 3170 2.254546 TTCGTGACAGAAAGCACCAT 57.745 45.000 0.00 0.00 0.00 3.55
2887 3171 1.511850 TCGTGACAGAAAGCACCATG 58.488 50.000 0.00 0.00 0.00 3.66
2888 3172 1.202639 TCGTGACAGAAAGCACCATGT 60.203 47.619 0.00 0.00 0.00 3.21
2889 3173 1.195448 CGTGACAGAAAGCACCATGTC 59.805 52.381 5.49 5.49 41.89 3.06
2890 3174 2.498167 GTGACAGAAAGCACCATGTCT 58.502 47.619 11.70 0.00 42.02 3.41
2891 3175 3.664107 GTGACAGAAAGCACCATGTCTA 58.336 45.455 11.70 0.00 42.02 2.59
2892 3176 3.433615 GTGACAGAAAGCACCATGTCTAC 59.566 47.826 11.70 6.43 42.02 2.59
2893 3177 3.003480 GACAGAAAGCACCATGTCTACC 58.997 50.000 5.26 0.00 39.15 3.18
2894 3178 2.002586 CAGAAAGCACCATGTCTACCG 58.997 52.381 0.00 0.00 0.00 4.02
2895 3179 1.623811 AGAAAGCACCATGTCTACCGT 59.376 47.619 0.00 0.00 0.00 4.83
2896 3180 2.829720 AGAAAGCACCATGTCTACCGTA 59.170 45.455 0.00 0.00 0.00 4.02
2897 3181 3.259876 AGAAAGCACCATGTCTACCGTAA 59.740 43.478 0.00 0.00 0.00 3.18
2898 3182 3.688694 AAGCACCATGTCTACCGTAAA 57.311 42.857 0.00 0.00 0.00 2.01
2899 3183 2.968675 AGCACCATGTCTACCGTAAAC 58.031 47.619 0.00 0.00 0.00 2.01
2900 3184 2.300723 AGCACCATGTCTACCGTAAACA 59.699 45.455 0.00 0.00 0.00 2.83
2901 3185 3.055385 AGCACCATGTCTACCGTAAACAT 60.055 43.478 0.00 0.00 34.03 2.71
2902 3186 3.687698 GCACCATGTCTACCGTAAACATT 59.312 43.478 0.00 0.00 31.43 2.71
2903 3187 4.155280 GCACCATGTCTACCGTAAACATTT 59.845 41.667 0.00 0.00 31.43 2.32
2904 3188 5.335348 GCACCATGTCTACCGTAAACATTTT 60.335 40.000 0.00 0.00 31.43 1.82
2905 3189 6.083630 CACCATGTCTACCGTAAACATTTTG 58.916 40.000 0.00 0.00 31.43 2.44
2906 3190 5.092781 CCATGTCTACCGTAAACATTTTGC 58.907 41.667 0.00 0.00 31.43 3.68
2907 3191 5.335269 CCATGTCTACCGTAAACATTTTGCA 60.335 40.000 0.00 0.00 31.43 4.08
2908 3192 5.752892 TGTCTACCGTAAACATTTTGCAA 57.247 34.783 0.00 0.00 0.00 4.08
2909 3193 6.132791 TGTCTACCGTAAACATTTTGCAAA 57.867 33.333 8.05 8.05 0.00 3.68
2910 3194 6.740110 TGTCTACCGTAAACATTTTGCAAAT 58.260 32.000 13.65 0.00 0.00 2.32
2911 3195 7.872881 TGTCTACCGTAAACATTTTGCAAATA 58.127 30.769 13.65 4.65 0.00 1.40
2912 3196 8.350722 TGTCTACCGTAAACATTTTGCAAATAA 58.649 29.630 13.65 0.00 0.00 1.40
2913 3197 8.632551 GTCTACCGTAAACATTTTGCAAATAAC 58.367 33.333 13.65 4.66 0.00 1.89
2914 3198 8.350722 TCTACCGTAAACATTTTGCAAATAACA 58.649 29.630 13.65 0.00 0.00 2.41
2915 3199 7.167831 ACCGTAAACATTTTGCAAATAACAC 57.832 32.000 13.65 5.99 0.00 3.32
2916 3200 6.981559 ACCGTAAACATTTTGCAAATAACACT 59.018 30.769 13.65 0.00 0.00 3.55
2917 3201 7.043059 ACCGTAAACATTTTGCAAATAACACTG 60.043 33.333 13.65 6.74 0.00 3.66
2918 3202 7.168302 CCGTAAACATTTTGCAAATAACACTGA 59.832 33.333 13.65 0.00 0.00 3.41
2919 3203 8.535592 CGTAAACATTTTGCAAATAACACTGAA 58.464 29.630 13.65 0.00 0.00 3.02
2920 3204 9.631639 GTAAACATTTTGCAAATAACACTGAAC 57.368 29.630 13.65 0.62 0.00 3.18
2921 3205 6.509317 ACATTTTGCAAATAACACTGAACG 57.491 33.333 13.65 0.00 0.00 3.95
2922 3206 5.461737 ACATTTTGCAAATAACACTGAACGG 59.538 36.000 13.65 0.00 0.00 4.44
2923 3207 2.697431 TGCAAATAACACTGAACGGC 57.303 45.000 0.00 0.00 0.00 5.68
2924 3208 1.069568 TGCAAATAACACTGAACGGCG 60.070 47.619 4.80 4.80 0.00 6.46
2925 3209 1.727857 GCAAATAACACTGAACGGCGG 60.728 52.381 13.24 0.00 0.00 6.13
2926 3210 1.801771 CAAATAACACTGAACGGCGGA 59.198 47.619 13.24 0.00 0.00 5.54
2927 3211 2.396590 AATAACACTGAACGGCGGAT 57.603 45.000 13.24 0.00 0.00 4.18
2928 3212 2.396590 ATAACACTGAACGGCGGATT 57.603 45.000 13.24 0.00 0.00 3.01
2929 3213 2.172851 TAACACTGAACGGCGGATTT 57.827 45.000 13.24 0.00 0.00 2.17
2930 3214 2.172851 AACACTGAACGGCGGATTTA 57.827 45.000 13.24 0.00 0.00 1.40
2931 3215 2.172851 ACACTGAACGGCGGATTTAA 57.827 45.000 13.24 0.00 0.00 1.52
2932 3216 1.802365 ACACTGAACGGCGGATTTAAC 59.198 47.619 13.24 0.00 0.00 2.01
2933 3217 2.073816 CACTGAACGGCGGATTTAACT 58.926 47.619 13.24 0.00 0.00 2.24
2934 3218 2.093783 CACTGAACGGCGGATTTAACTC 59.906 50.000 13.24 0.00 0.00 3.01
2935 3219 1.323534 CTGAACGGCGGATTTAACTCG 59.676 52.381 13.24 0.00 0.00 4.18
2936 3220 0.648958 GAACGGCGGATTTAACTCGG 59.351 55.000 13.24 0.00 0.00 4.63
2937 3221 0.037046 AACGGCGGATTTAACTCGGT 60.037 50.000 13.24 0.00 0.00 4.69
2938 3222 0.037046 ACGGCGGATTTAACTCGGTT 60.037 50.000 13.24 0.00 0.00 4.44
2939 3223 0.372334 CGGCGGATTTAACTCGGTTG 59.628 55.000 0.00 0.00 0.00 3.77
2940 3224 1.729284 GGCGGATTTAACTCGGTTGA 58.271 50.000 3.00 0.00 0.00 3.18
2942 3226 1.062148 GCGGATTTAACTCGGTTGAGC 59.938 52.381 3.00 0.00 46.69 4.26
2943 3227 2.343101 CGGATTTAACTCGGTTGAGCA 58.657 47.619 0.23 0.00 46.69 4.26
2944 3228 2.093783 CGGATTTAACTCGGTTGAGCAC 59.906 50.000 0.23 0.00 46.69 4.40
2945 3229 2.093783 GGATTTAACTCGGTTGAGCACG 59.906 50.000 0.23 0.00 46.69 5.34
2946 3230 2.228138 TTTAACTCGGTTGAGCACGT 57.772 45.000 0.23 0.00 46.69 4.49
2947 3231 2.228138 TTAACTCGGTTGAGCACGTT 57.772 45.000 0.00 0.00 46.69 3.99
2948 3232 2.228138 TAACTCGGTTGAGCACGTTT 57.772 45.000 0.00 0.00 46.69 3.60
2949 3233 2.228138 AACTCGGTTGAGCACGTTTA 57.772 45.000 0.00 0.00 46.69 2.01
2950 3234 2.450609 ACTCGGTTGAGCACGTTTAT 57.549 45.000 0.00 0.00 46.69 1.40
2951 3235 2.066262 ACTCGGTTGAGCACGTTTATG 58.934 47.619 0.00 0.00 46.69 1.90
2952 3236 2.288579 ACTCGGTTGAGCACGTTTATGA 60.289 45.455 0.00 0.00 46.69 2.15
2953 3237 2.063266 TCGGTTGAGCACGTTTATGAC 58.937 47.619 0.00 0.00 0.00 3.06
2954 3238 1.795872 CGGTTGAGCACGTTTATGACA 59.204 47.619 0.00 0.00 0.00 3.58
2955 3239 2.159841 CGGTTGAGCACGTTTATGACAG 60.160 50.000 0.00 0.00 0.00 3.51
2956 3240 2.412847 GGTTGAGCACGTTTATGACAGC 60.413 50.000 0.00 0.00 0.00 4.40
2957 3241 2.455674 TGAGCACGTTTATGACAGCT 57.544 45.000 0.00 0.00 40.64 4.24
2958 3242 2.068519 TGAGCACGTTTATGACAGCTG 58.931 47.619 13.48 13.48 38.80 4.24
2959 3243 1.394917 GAGCACGTTTATGACAGCTGG 59.605 52.381 19.93 0.00 38.80 4.85
2960 3244 0.447801 GCACGTTTATGACAGCTGGG 59.552 55.000 19.93 0.00 0.00 4.45
2961 3245 1.086696 CACGTTTATGACAGCTGGGG 58.913 55.000 19.93 0.00 0.00 4.96
2962 3246 0.676782 ACGTTTATGACAGCTGGGGC 60.677 55.000 19.93 7.61 39.06 5.80
2963 3247 1.376609 CGTTTATGACAGCTGGGGCC 61.377 60.000 19.93 0.00 39.73 5.80
2964 3248 0.034089 GTTTATGACAGCTGGGGCCT 60.034 55.000 19.93 0.00 39.73 5.19
2965 3249 0.704076 TTTATGACAGCTGGGGCCTT 59.296 50.000 19.93 0.00 39.73 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
447 456 2.755103 GGTCCCTGAACCATTTTAGCTG 59.245 50.000 0.00 0.00 39.27 4.24
459 469 4.290942 GAATCCTCTAGAAGGTCCCTGAA 58.709 47.826 0.00 0.00 46.32 3.02
464 474 6.408320 GGTTTTAGGAATCCTCTAGAAGGTCC 60.408 46.154 4.42 2.46 46.32 4.46
465 475 6.584488 GGTTTTAGGAATCCTCTAGAAGGTC 58.416 44.000 4.42 0.00 46.32 3.85
498 508 2.169978 GGTTATAAGAACCTCGGCTGGT 59.830 50.000 0.00 0.00 43.11 4.00
500 510 2.470821 CGGTTATAAGAACCTCGGCTG 58.529 52.381 4.53 0.00 38.15 4.85
501 511 1.411612 CCGGTTATAAGAACCTCGGCT 59.588 52.381 4.53 0.00 38.15 5.52
502 512 1.410153 TCCGGTTATAAGAACCTCGGC 59.590 52.381 0.00 0.00 38.15 5.54
503 513 3.806625 TTCCGGTTATAAGAACCTCGG 57.193 47.619 0.00 0.00 38.15 4.63
506 516 5.005740 GGTTGTTTCCGGTTATAAGAACCT 58.994 41.667 21.33 0.00 40.26 3.50
507 517 5.005740 AGGTTGTTTCCGGTTATAAGAACC 58.994 41.667 21.20 21.20 42.40 3.62
508 518 7.677982 GCATAGGTTGTTTCCGGTTATAAGAAC 60.678 40.741 0.00 7.04 0.00 3.01
509 519 6.316890 GCATAGGTTGTTTCCGGTTATAAGAA 59.683 38.462 0.00 0.00 0.00 2.52
510 520 5.818857 GCATAGGTTGTTTCCGGTTATAAGA 59.181 40.000 0.00 0.00 0.00 2.10
511 521 5.587043 TGCATAGGTTGTTTCCGGTTATAAG 59.413 40.000 0.00 0.00 0.00 1.73
512 522 5.354792 GTGCATAGGTTGTTTCCGGTTATAA 59.645 40.000 0.00 0.00 0.00 0.98
513 523 4.877251 GTGCATAGGTTGTTTCCGGTTATA 59.123 41.667 0.00 0.00 0.00 0.98
514 524 3.692593 GTGCATAGGTTGTTTCCGGTTAT 59.307 43.478 0.00 0.00 0.00 1.89
515 525 3.075884 GTGCATAGGTTGTTTCCGGTTA 58.924 45.455 0.00 0.00 0.00 2.85
516 526 1.883926 GTGCATAGGTTGTTTCCGGTT 59.116 47.619 0.00 0.00 0.00 4.44
517 527 1.202830 TGTGCATAGGTTGTTTCCGGT 60.203 47.619 0.00 0.00 0.00 5.28
518 528 1.199097 GTGTGCATAGGTTGTTTCCGG 59.801 52.381 0.00 0.00 0.00 5.14
519 529 1.199097 GGTGTGCATAGGTTGTTTCCG 59.801 52.381 0.00 0.00 0.00 4.30
520 530 1.199097 CGGTGTGCATAGGTTGTTTCC 59.801 52.381 0.00 0.00 0.00 3.13
521 531 1.401018 GCGGTGTGCATAGGTTGTTTC 60.401 52.381 0.00 0.00 45.45 2.78
522 532 0.596082 GCGGTGTGCATAGGTTGTTT 59.404 50.000 0.00 0.00 45.45 2.83
523 533 2.253513 GCGGTGTGCATAGGTTGTT 58.746 52.632 0.00 0.00 45.45 2.83
524 534 3.981308 GCGGTGTGCATAGGTTGT 58.019 55.556 0.00 0.00 45.45 3.32
550 560 5.496133 ACATATTGAGCAATTGAGCTGAC 57.504 39.130 10.34 0.00 46.75 3.51
556 566 4.512484 TGGTCGACATATTGAGCAATTGA 58.488 39.130 18.91 0.00 42.56 2.57
584 594 6.573434 TCTGTCAAGTATTACTGATTCGCAT 58.427 36.000 0.00 0.00 0.00 4.73
634 652 4.137872 CATGGCTTGCGCTTGGGG 62.138 66.667 9.73 0.00 36.09 4.96
746 891 7.650504 CGGAATTACTTGTCGTAGAAATGGATA 59.349 37.037 0.00 0.00 39.69 2.59
762 907 1.755380 CTCCTCCGTCCGGAATTACTT 59.245 52.381 5.23 0.00 44.66 2.24
764 909 1.396653 TCTCCTCCGTCCGGAATTAC 58.603 55.000 5.23 0.00 44.66 1.89
775 920 1.404315 GCCTTGTACTGTTCTCCTCCG 60.404 57.143 0.00 0.00 0.00 4.63
783 928 4.499019 CGGATGTTTTTGCCTTGTACTGTT 60.499 41.667 0.00 0.00 0.00 3.16
872 1017 6.316640 CGAGAGAAGGTACAAGAAGATCTACA 59.683 42.308 0.00 0.00 0.00 2.74
884 1029 3.420300 AGTCTGACGAGAGAAGGTACA 57.580 47.619 1.52 0.00 0.00 2.90
885 1030 4.769859 AAAGTCTGACGAGAGAAGGTAC 57.230 45.455 1.52 0.00 0.00 3.34
932 1077 3.011566 TGTGGATATTGCGTGGGATTT 57.988 42.857 0.00 0.00 0.00 2.17
1029 1174 1.002134 GGAGGTGGTGGTGATGGTG 60.002 63.158 0.00 0.00 0.00 4.17
1030 1175 2.592993 CGGAGGTGGTGGTGATGGT 61.593 63.158 0.00 0.00 0.00 3.55
1031 1176 2.268920 CGGAGGTGGTGGTGATGG 59.731 66.667 0.00 0.00 0.00 3.51
1077 1222 2.609921 GGGAAGGGGAGGGTCGTT 60.610 66.667 0.00 0.00 0.00 3.85
1080 1228 2.967946 CGTTGGGAAGGGGAGGGTC 61.968 68.421 0.00 0.00 0.00 4.46
1215 1369 3.347590 TCCTCCTCCTCCTCGCCA 61.348 66.667 0.00 0.00 0.00 5.69
1463 1623 2.094675 CAAGATTTGCTGGTGTAGGGG 58.905 52.381 0.00 0.00 0.00 4.79
1466 1634 6.595326 TGACTAATCAAGATTTGCTGGTGTAG 59.405 38.462 0.02 0.00 32.50 2.74
1662 1835 3.757248 AATGGCGGCGGTGATCCTC 62.757 63.158 9.78 0.00 0.00 3.71
1692 1865 0.608130 TGCGTGCTTACTCAGGTGAT 59.392 50.000 0.00 0.00 0.00 3.06
1701 1874 1.225745 GCGTGTGATGCGTGCTTAC 60.226 57.895 0.00 0.00 0.00 2.34
1702 1875 1.666234 TGCGTGTGATGCGTGCTTA 60.666 52.632 0.00 0.00 31.36 3.09
1704 1877 3.716006 GTGCGTGTGATGCGTGCT 61.716 61.111 0.00 0.00 31.36 4.40
1705 1878 4.741781 GGTGCGTGTGATGCGTGC 62.742 66.667 0.00 0.00 31.36 5.34
1706 1879 2.186350 ATTGGTGCGTGTGATGCGTG 62.186 55.000 0.00 0.00 31.36 5.34
1708 1881 1.226101 GATTGGTGCGTGTGATGCG 60.226 57.895 0.00 0.00 31.36 4.73
1767 1949 1.133025 GCAAGCATGTGTAGGCGATTT 59.867 47.619 0.00 0.00 38.93 2.17
1812 1998 4.431416 TTCACTAACTGCTTCCAAGGAA 57.569 40.909 0.99 0.99 0.00 3.36
1822 2008 6.000891 TGTGTCATTCATTTCACTAACTGC 57.999 37.500 0.00 0.00 0.00 4.40
1922 2131 2.118076 CCTGCCTGCAAAGGGGAA 59.882 61.111 2.43 0.00 0.00 3.97
1944 2183 3.997400 CTCCTCCGGCTCCGTCTCA 62.997 68.421 7.59 0.00 37.81 3.27
2214 2482 4.520492 AGGTGTTGAAATGATCAGGTCAAC 59.480 41.667 29.92 29.92 46.46 3.18
2327 2603 7.283127 GTCCCTATAGTTTTCATCAAGCAATCA 59.717 37.037 0.00 0.00 0.00 2.57
2414 2698 1.344114 GGGGGTTACGCCGATATACAA 59.656 52.381 12.30 0.00 40.14 2.41
2477 2761 6.183360 CGGATAAAAATAGCCTTCGGTTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
2527 2811 1.402968 CATGTGCAATAGCCACACTCC 59.597 52.381 0.00 0.00 41.13 3.85
2533 2817 2.016318 GTGCTACATGTGCAATAGCCA 58.984 47.619 19.82 5.44 42.41 4.75
2556 2840 5.072055 TGTCACTCAAAACATCATGTCCAT 58.928 37.500 0.00 0.00 0.00 3.41
2580 2864 6.693466 TCTTTTAGTGATGACCGTGACAATA 58.307 36.000 0.00 0.00 0.00 1.90
2624 2908 4.265073 AGCCATGTCCAGTCAATAGAAAC 58.735 43.478 0.00 0.00 0.00 2.78
2677 2961 9.886337 TTAGTAATCCTGGTTGTATATCTACCA 57.114 33.333 0.00 0.00 46.34 3.25
2680 2964 9.017509 CGGTTAGTAATCCTGGTTGTATATCTA 57.982 37.037 0.00 0.00 0.00 1.98
2681 2965 7.039223 CCGGTTAGTAATCCTGGTTGTATATCT 60.039 40.741 0.00 0.00 0.00 1.98
2682 2966 7.095270 CCGGTTAGTAATCCTGGTTGTATATC 58.905 42.308 0.00 0.00 0.00 1.63
2683 2967 6.013984 CCCGGTTAGTAATCCTGGTTGTATAT 60.014 42.308 0.00 0.00 0.00 0.86
2684 2968 5.305128 CCCGGTTAGTAATCCTGGTTGTATA 59.695 44.000 0.00 0.00 0.00 1.47
2685 2969 4.102054 CCCGGTTAGTAATCCTGGTTGTAT 59.898 45.833 0.00 0.00 0.00 2.29
2686 2970 3.451902 CCCGGTTAGTAATCCTGGTTGTA 59.548 47.826 0.00 0.00 0.00 2.41
2687 2971 2.237893 CCCGGTTAGTAATCCTGGTTGT 59.762 50.000 0.00 0.00 0.00 3.32
2688 2972 2.914059 CCCGGTTAGTAATCCTGGTTG 58.086 52.381 0.00 0.00 0.00 3.77
2689 2973 1.211212 GCCCGGTTAGTAATCCTGGTT 59.789 52.381 0.00 0.00 32.00 3.67
2690 2974 0.835276 GCCCGGTTAGTAATCCTGGT 59.165 55.000 0.00 0.00 32.00 4.00
2691 2975 0.834612 TGCCCGGTTAGTAATCCTGG 59.165 55.000 0.00 7.27 0.00 4.45
2692 2976 2.550208 GGATGCCCGGTTAGTAATCCTG 60.550 54.545 0.00 0.00 32.52 3.86
2693 2977 1.697982 GGATGCCCGGTTAGTAATCCT 59.302 52.381 0.00 0.00 32.52 3.24
2694 2978 1.418637 TGGATGCCCGGTTAGTAATCC 59.581 52.381 0.00 4.16 35.23 3.01
2695 2979 2.490991 GTGGATGCCCGGTTAGTAATC 58.509 52.381 0.00 0.00 34.29 1.75
2696 2980 1.202604 CGTGGATGCCCGGTTAGTAAT 60.203 52.381 0.00 0.00 34.29 1.89
2697 2981 0.176219 CGTGGATGCCCGGTTAGTAA 59.824 55.000 0.00 0.00 34.29 2.24
2698 2982 0.683828 TCGTGGATGCCCGGTTAGTA 60.684 55.000 0.00 0.00 34.29 1.82
2699 2983 1.335132 ATCGTGGATGCCCGGTTAGT 61.335 55.000 0.00 0.00 34.29 2.24
2700 2984 0.179056 AATCGTGGATGCCCGGTTAG 60.179 55.000 0.00 0.00 34.29 2.34
2701 2985 0.462937 CAATCGTGGATGCCCGGTTA 60.463 55.000 0.00 0.00 34.29 2.85
2702 2986 1.748879 CAATCGTGGATGCCCGGTT 60.749 57.895 0.00 0.00 34.29 4.44
2703 2987 2.124736 CAATCGTGGATGCCCGGT 60.125 61.111 0.00 0.00 34.29 5.28
2704 2988 3.585990 GCAATCGTGGATGCCCGG 61.586 66.667 0.00 0.00 34.29 5.73
2705 2989 3.585990 GGCAATCGTGGATGCCCG 61.586 66.667 5.49 0.00 41.28 6.13
2706 2990 3.585990 CGGCAATCGTGGATGCCC 61.586 66.667 10.90 0.00 44.01 5.36
2707 2991 1.447317 ATTCGGCAATCGTGGATGCC 61.447 55.000 6.72 6.72 43.49 4.40
2708 2992 0.381801 AATTCGGCAATCGTGGATGC 59.618 50.000 0.00 0.00 40.32 3.91
2709 2993 1.670295 TGAATTCGGCAATCGTGGATG 59.330 47.619 0.04 0.00 40.32 3.51
2710 2994 2.036958 TGAATTCGGCAATCGTGGAT 57.963 45.000 0.04 0.00 40.32 3.41
2711 2995 2.036958 ATGAATTCGGCAATCGTGGA 57.963 45.000 0.04 0.00 40.32 4.02
2712 2996 2.453080 CAATGAATTCGGCAATCGTGG 58.547 47.619 0.04 0.00 40.32 4.94
2713 2997 1.847999 GCAATGAATTCGGCAATCGTG 59.152 47.619 10.56 0.00 40.32 4.35
2714 2998 1.202290 GGCAATGAATTCGGCAATCGT 60.202 47.619 15.53 0.00 40.32 3.73
2715 2999 1.202279 TGGCAATGAATTCGGCAATCG 60.202 47.619 15.53 0.00 40.90 3.34
2716 3000 2.582728 TGGCAATGAATTCGGCAATC 57.417 45.000 15.53 2.96 31.56 2.67
2717 3001 2.620242 GTTGGCAATGAATTCGGCAAT 58.380 42.857 18.83 0.00 45.40 3.56
2718 3002 1.668337 CGTTGGCAATGAATTCGGCAA 60.668 47.619 14.26 14.09 42.19 4.52
2719 3003 0.109365 CGTTGGCAATGAATTCGGCA 60.109 50.000 14.26 10.42 0.00 5.69
2720 3004 0.109319 ACGTTGGCAATGAATTCGGC 60.109 50.000 25.34 4.59 0.00 5.54
2721 3005 1.616620 CACGTTGGCAATGAATTCGG 58.383 50.000 25.34 3.59 0.00 4.30
2722 3006 1.198867 TCCACGTTGGCAATGAATTCG 59.801 47.619 25.34 14.54 37.47 3.34
2723 3007 2.030363 TGTCCACGTTGGCAATGAATTC 60.030 45.455 25.34 12.75 37.47 2.17
2724 3008 1.959985 TGTCCACGTTGGCAATGAATT 59.040 42.857 25.34 0.57 37.47 2.17
2725 3009 1.541147 CTGTCCACGTTGGCAATGAAT 59.459 47.619 25.34 1.35 37.47 2.57
2726 3010 0.950836 CTGTCCACGTTGGCAATGAA 59.049 50.000 25.34 7.97 37.47 2.57
2727 3011 0.179032 ACTGTCCACGTTGGCAATGA 60.179 50.000 25.34 7.00 37.47 2.57
2728 3012 0.040157 CACTGTCCACGTTGGCAATG 60.040 55.000 17.61 17.61 37.47 2.82
2729 3013 0.465460 ACACTGTCCACGTTGGCAAT 60.465 50.000 1.92 0.00 37.47 3.56
2730 3014 0.178301 TACACTGTCCACGTTGGCAA 59.822 50.000 0.00 0.00 37.47 4.52
2731 3015 0.394938 ATACACTGTCCACGTTGGCA 59.605 50.000 0.00 0.00 37.47 4.92
2732 3016 1.196808 CAATACACTGTCCACGTTGGC 59.803 52.381 0.00 0.00 37.47 4.52
2733 3017 2.223144 CACAATACACTGTCCACGTTGG 59.777 50.000 0.00 0.00 39.43 3.77
2734 3018 2.349438 GCACAATACACTGTCCACGTTG 60.349 50.000 0.00 0.00 0.00 4.10
2735 3019 1.871039 GCACAATACACTGTCCACGTT 59.129 47.619 0.00 0.00 0.00 3.99
2736 3020 1.508632 GCACAATACACTGTCCACGT 58.491 50.000 0.00 0.00 0.00 4.49
2737 3021 0.796312 GGCACAATACACTGTCCACG 59.204 55.000 0.00 0.00 0.00 4.94
2738 3022 1.165270 GGGCACAATACACTGTCCAC 58.835 55.000 0.00 0.00 0.00 4.02
2739 3023 0.767998 TGGGCACAATACACTGTCCA 59.232 50.000 0.00 0.00 0.00 4.02
2740 3024 1.165270 GTGGGCACAATACACTGTCC 58.835 55.000 0.00 0.00 32.58 4.02
2741 3025 2.185004 AGTGGGCACAATACACTGTC 57.815 50.000 0.00 0.00 43.29 3.51
2744 3028 2.106511 AGAACAGTGGGCACAATACACT 59.893 45.455 0.00 0.00 45.62 3.55
2745 3029 2.484264 GAGAACAGTGGGCACAATACAC 59.516 50.000 0.00 0.00 35.43 2.90
2746 3030 2.371841 AGAGAACAGTGGGCACAATACA 59.628 45.455 0.00 0.00 0.00 2.29
2747 3031 3.059352 AGAGAACAGTGGGCACAATAC 57.941 47.619 0.00 0.00 0.00 1.89
2748 3032 3.838317 AGTAGAGAACAGTGGGCACAATA 59.162 43.478 0.00 0.00 0.00 1.90
2749 3033 2.639839 AGTAGAGAACAGTGGGCACAAT 59.360 45.455 0.00 0.00 0.00 2.71
2750 3034 2.047061 AGTAGAGAACAGTGGGCACAA 58.953 47.619 0.00 0.00 0.00 3.33
2751 3035 1.717032 AGTAGAGAACAGTGGGCACA 58.283 50.000 0.00 0.00 0.00 4.57
2752 3036 2.300437 AGAAGTAGAGAACAGTGGGCAC 59.700 50.000 0.00 0.00 0.00 5.01
2753 3037 2.609747 AGAAGTAGAGAACAGTGGGCA 58.390 47.619 0.00 0.00 0.00 5.36
2754 3038 3.427773 CGTAGAAGTAGAGAACAGTGGGC 60.428 52.174 0.00 0.00 0.00 5.36
2755 3039 4.008330 TCGTAGAAGTAGAGAACAGTGGG 58.992 47.826 0.00 0.00 0.00 4.61
2756 3040 4.454847 TGTCGTAGAAGTAGAGAACAGTGG 59.545 45.833 0.00 0.00 39.69 4.00
2757 3041 5.608676 TGTCGTAGAAGTAGAGAACAGTG 57.391 43.478 0.00 0.00 39.69 3.66
2758 3042 5.764192 AGTTGTCGTAGAAGTAGAGAACAGT 59.236 40.000 7.30 0.00 39.61 3.55
2759 3043 6.243811 AGTTGTCGTAGAAGTAGAGAACAG 57.756 41.667 7.30 0.00 39.61 3.16
2760 3044 6.148480 GGTAGTTGTCGTAGAAGTAGAGAACA 59.852 42.308 7.30 0.00 39.61 3.18
2761 3045 6.148480 TGGTAGTTGTCGTAGAAGTAGAGAAC 59.852 42.308 0.00 0.00 39.69 3.01
2762 3046 6.233434 TGGTAGTTGTCGTAGAAGTAGAGAA 58.767 40.000 0.00 0.00 39.69 2.87
2763 3047 5.798132 TGGTAGTTGTCGTAGAAGTAGAGA 58.202 41.667 0.00 0.00 39.69 3.10
2764 3048 6.680874 ATGGTAGTTGTCGTAGAAGTAGAG 57.319 41.667 0.00 0.00 39.69 2.43
2765 3049 8.618677 CATAATGGTAGTTGTCGTAGAAGTAGA 58.381 37.037 0.00 0.00 39.69 2.59
2766 3050 8.404000 ACATAATGGTAGTTGTCGTAGAAGTAG 58.596 37.037 0.00 0.00 39.69 2.57
2767 3051 8.284945 ACATAATGGTAGTTGTCGTAGAAGTA 57.715 34.615 0.00 0.00 39.69 2.24
2768 3052 7.166691 ACATAATGGTAGTTGTCGTAGAAGT 57.833 36.000 0.00 0.00 39.69 3.01
2769 3053 7.010183 CCAACATAATGGTAGTTGTCGTAGAAG 59.990 40.741 0.00 0.00 40.64 2.85
2770 3054 6.814644 CCAACATAATGGTAGTTGTCGTAGAA 59.185 38.462 0.00 0.00 40.64 2.10
2771 3055 6.153170 TCCAACATAATGGTAGTTGTCGTAGA 59.847 38.462 0.00 0.00 40.64 2.59
2772 3056 6.334989 TCCAACATAATGGTAGTTGTCGTAG 58.665 40.000 0.00 0.00 40.64 3.51
2773 3057 6.283544 TCCAACATAATGGTAGTTGTCGTA 57.716 37.500 0.00 0.00 40.64 3.43
2774 3058 5.155278 TCCAACATAATGGTAGTTGTCGT 57.845 39.130 0.00 0.00 40.64 4.34
2775 3059 7.494625 ACTTATCCAACATAATGGTAGTTGTCG 59.505 37.037 0.00 0.00 40.64 4.35
2776 3060 8.732746 ACTTATCCAACATAATGGTAGTTGTC 57.267 34.615 0.00 0.00 40.64 3.18
2777 3061 9.528489 AAACTTATCCAACATAATGGTAGTTGT 57.472 29.630 0.00 0.00 40.64 3.32
2790 3074 9.290988 TGCAATTTACTCTAAACTTATCCAACA 57.709 29.630 0.00 0.00 0.00 3.33
2791 3075 9.556030 GTGCAATTTACTCTAAACTTATCCAAC 57.444 33.333 0.00 0.00 0.00 3.77
2792 3076 9.290988 TGTGCAATTTACTCTAAACTTATCCAA 57.709 29.630 0.00 0.00 0.00 3.53
2793 3077 8.856153 TGTGCAATTTACTCTAAACTTATCCA 57.144 30.769 0.00 0.00 0.00 3.41
2797 3081 9.738832 GGTTTTGTGCAATTTACTCTAAACTTA 57.261 29.630 0.00 0.00 0.00 2.24
2798 3082 8.254508 TGGTTTTGTGCAATTTACTCTAAACTT 58.745 29.630 0.00 0.00 0.00 2.66
2799 3083 7.704899 GTGGTTTTGTGCAATTTACTCTAAACT 59.295 33.333 0.00 0.00 0.00 2.66
2800 3084 7.042992 GGTGGTTTTGTGCAATTTACTCTAAAC 60.043 37.037 0.00 0.00 0.00 2.01
2801 3085 6.981559 GGTGGTTTTGTGCAATTTACTCTAAA 59.018 34.615 0.00 0.00 0.00 1.85
2802 3086 6.096987 TGGTGGTTTTGTGCAATTTACTCTAA 59.903 34.615 0.00 0.00 0.00 2.10
2803 3087 5.594725 TGGTGGTTTTGTGCAATTTACTCTA 59.405 36.000 0.00 0.00 0.00 2.43
2804 3088 4.404073 TGGTGGTTTTGTGCAATTTACTCT 59.596 37.500 0.00 0.00 0.00 3.24
2805 3089 4.506288 GTGGTGGTTTTGTGCAATTTACTC 59.494 41.667 0.00 0.00 0.00 2.59
2806 3090 4.161377 AGTGGTGGTTTTGTGCAATTTACT 59.839 37.500 0.00 0.00 0.00 2.24
2807 3091 4.438148 AGTGGTGGTTTTGTGCAATTTAC 58.562 39.130 0.00 0.00 0.00 2.01
2808 3092 4.744795 AGTGGTGGTTTTGTGCAATTTA 57.255 36.364 0.00 0.00 0.00 1.40
2809 3093 3.625649 AGTGGTGGTTTTGTGCAATTT 57.374 38.095 0.00 0.00 0.00 1.82
2810 3094 3.625649 AAGTGGTGGTTTTGTGCAATT 57.374 38.095 0.00 0.00 0.00 2.32
2811 3095 3.055530 TCAAAGTGGTGGTTTTGTGCAAT 60.056 39.130 0.00 0.00 36.09 3.56
2812 3096 2.300152 TCAAAGTGGTGGTTTTGTGCAA 59.700 40.909 0.00 0.00 36.09 4.08
2813 3097 1.895798 TCAAAGTGGTGGTTTTGTGCA 59.104 42.857 0.00 0.00 36.09 4.57
2814 3098 2.165437 TCTCAAAGTGGTGGTTTTGTGC 59.835 45.455 0.00 0.00 36.09 4.57
2815 3099 3.734902 GCTCTCAAAGTGGTGGTTTTGTG 60.735 47.826 0.00 0.00 36.09 3.33
2816 3100 2.427095 GCTCTCAAAGTGGTGGTTTTGT 59.573 45.455 0.00 0.00 36.09 2.83
2817 3101 2.689983 AGCTCTCAAAGTGGTGGTTTTG 59.310 45.455 0.00 0.00 36.00 2.44
2818 3102 3.018423 AGCTCTCAAAGTGGTGGTTTT 57.982 42.857 0.00 0.00 0.00 2.43
2819 3103 2.736670 AGCTCTCAAAGTGGTGGTTT 57.263 45.000 0.00 0.00 0.00 3.27
2820 3104 2.039084 CCTAGCTCTCAAAGTGGTGGTT 59.961 50.000 0.00 0.00 0.00 3.67
2821 3105 1.625818 CCTAGCTCTCAAAGTGGTGGT 59.374 52.381 0.00 0.00 0.00 4.16
2822 3106 1.625818 ACCTAGCTCTCAAAGTGGTGG 59.374 52.381 0.00 0.00 0.00 4.61
2823 3107 3.409026 AACCTAGCTCTCAAAGTGGTG 57.591 47.619 0.00 0.00 0.00 4.17
2824 3108 3.744660 CAAACCTAGCTCTCAAAGTGGT 58.255 45.455 0.00 0.00 0.00 4.16
2825 3109 2.485814 GCAAACCTAGCTCTCAAAGTGG 59.514 50.000 0.00 0.00 0.00 4.00
2826 3110 3.141398 TGCAAACCTAGCTCTCAAAGTG 58.859 45.455 0.00 0.00 0.00 3.16
2827 3111 3.071602 TCTGCAAACCTAGCTCTCAAAGT 59.928 43.478 0.00 0.00 0.00 2.66
2828 3112 3.668447 TCTGCAAACCTAGCTCTCAAAG 58.332 45.455 0.00 0.00 0.00 2.77
2829 3113 3.769739 TCTGCAAACCTAGCTCTCAAA 57.230 42.857 0.00 0.00 0.00 2.69
2830 3114 3.769739 TTCTGCAAACCTAGCTCTCAA 57.230 42.857 0.00 0.00 0.00 3.02
2831 3115 3.769739 TTTCTGCAAACCTAGCTCTCA 57.230 42.857 0.00 0.00 0.00 3.27
2832 3116 3.815401 TGTTTTCTGCAAACCTAGCTCTC 59.185 43.478 0.00 0.00 43.87 3.20
2833 3117 3.565902 GTGTTTTCTGCAAACCTAGCTCT 59.434 43.478 0.00 0.00 43.87 4.09
2834 3118 3.565902 AGTGTTTTCTGCAAACCTAGCTC 59.434 43.478 0.00 0.00 43.87 4.09
2835 3119 3.555966 AGTGTTTTCTGCAAACCTAGCT 58.444 40.909 0.64 0.00 43.87 3.32
2836 3120 3.990318 AGTGTTTTCTGCAAACCTAGC 57.010 42.857 0.64 0.00 43.87 3.42
2837 3121 4.510340 ACGTAGTGTTTTCTGCAAACCTAG 59.490 41.667 0.64 0.00 43.87 3.02
2838 3122 4.444536 ACGTAGTGTTTTCTGCAAACCTA 58.555 39.130 0.64 0.26 43.87 3.08
2839 3123 3.275999 ACGTAGTGTTTTCTGCAAACCT 58.724 40.909 0.64 1.07 43.87 3.50
2840 3124 3.685836 ACGTAGTGTTTTCTGCAAACC 57.314 42.857 0.64 0.00 43.87 3.27
2841 3125 5.561993 TGTAACGTAGTGTTTTCTGCAAAC 58.438 37.500 0.00 0.00 45.00 2.93
2842 3126 5.798015 TGTAACGTAGTGTTTTCTGCAAA 57.202 34.783 0.00 0.00 45.00 3.68
2843 3127 5.994887 ATGTAACGTAGTGTTTTCTGCAA 57.005 34.783 0.00 0.00 45.00 4.08
2844 3128 5.994887 AATGTAACGTAGTGTTTTCTGCA 57.005 34.783 0.00 0.00 45.00 4.41
2845 3129 6.084551 CGAAAATGTAACGTAGTGTTTTCTGC 59.915 38.462 18.50 0.00 45.00 4.26
2846 3130 7.109668 CACGAAAATGTAACGTAGTGTTTTCTG 59.890 37.037 18.50 15.53 45.00 3.02
2847 3131 7.010367 TCACGAAAATGTAACGTAGTGTTTTCT 59.990 33.333 18.50 9.34 45.00 2.52
2848 3132 7.109259 GTCACGAAAATGTAACGTAGTGTTTTC 59.891 37.037 14.22 14.22 45.00 2.29
2849 3133 6.901357 GTCACGAAAATGTAACGTAGTGTTTT 59.099 34.615 0.00 0.00 45.00 2.43
2850 3134 6.035866 TGTCACGAAAATGTAACGTAGTGTTT 59.964 34.615 0.00 0.00 45.00 2.83
2851 3135 5.519566 TGTCACGAAAATGTAACGTAGTGTT 59.480 36.000 0.00 0.00 45.00 3.32
2852 3136 5.042593 TGTCACGAAAATGTAACGTAGTGT 58.957 37.500 0.00 0.00 45.00 3.55
2853 3137 5.400188 TCTGTCACGAAAATGTAACGTAGTG 59.600 40.000 0.00 0.00 45.00 2.74
2854 3138 6.476380 TTTCTGTCACGAAAATGTAACGTAGT 59.524 34.615 0.00 0.00 38.47 2.73
2855 3139 6.442487 TTCTGTCACGAAAATGTAACGTAG 57.558 37.500 0.00 0.00 38.47 3.51
2856 3140 6.562640 GCTTTCTGTCACGAAAATGTAACGTA 60.563 38.462 0.00 0.00 38.47 3.57
2857 3141 5.721876 TTTCTGTCACGAAAATGTAACGT 57.278 34.783 0.00 0.00 40.87 3.99
2858 3142 4.607235 GCTTTCTGTCACGAAAATGTAACG 59.393 41.667 0.00 0.00 32.95 3.18
2859 3143 5.395486 GTGCTTTCTGTCACGAAAATGTAAC 59.605 40.000 0.00 0.00 32.95 2.50
2860 3144 5.504994 GGTGCTTTCTGTCACGAAAATGTAA 60.505 40.000 0.00 0.00 32.95 2.41
2861 3145 4.024387 GGTGCTTTCTGTCACGAAAATGTA 60.024 41.667 0.00 0.00 32.95 2.29
2862 3146 3.243068 GGTGCTTTCTGTCACGAAAATGT 60.243 43.478 0.00 0.00 32.95 2.71
2863 3147 3.243035 TGGTGCTTTCTGTCACGAAAATG 60.243 43.478 0.00 0.00 32.95 2.32
2864 3148 2.948979 TGGTGCTTTCTGTCACGAAAAT 59.051 40.909 0.00 0.00 32.95 1.82
2865 3149 2.360844 TGGTGCTTTCTGTCACGAAAA 58.639 42.857 0.00 0.00 32.95 2.29
2866 3150 2.031258 TGGTGCTTTCTGTCACGAAA 57.969 45.000 0.00 0.00 34.20 3.46
2867 3151 1.872952 CATGGTGCTTTCTGTCACGAA 59.127 47.619 0.00 0.00 34.20 3.85
2868 3152 1.202639 ACATGGTGCTTTCTGTCACGA 60.203 47.619 0.00 0.00 34.20 4.35
2869 3153 1.195448 GACATGGTGCTTTCTGTCACG 59.805 52.381 0.00 0.00 38.28 4.35
2870 3154 2.498167 AGACATGGTGCTTTCTGTCAC 58.502 47.619 0.00 0.00 40.32 3.67
2871 3155 2.936919 AGACATGGTGCTTTCTGTCA 57.063 45.000 0.00 0.00 40.32 3.58
2872 3156 3.003480 GGTAGACATGGTGCTTTCTGTC 58.997 50.000 0.00 0.00 38.59 3.51
2873 3157 2.612972 CGGTAGACATGGTGCTTTCTGT 60.613 50.000 0.00 0.00 0.00 3.41
2874 3158 2.002586 CGGTAGACATGGTGCTTTCTG 58.997 52.381 0.00 0.00 0.00 3.02
2875 3159 1.623811 ACGGTAGACATGGTGCTTTCT 59.376 47.619 0.00 0.00 0.00 2.52
2876 3160 2.094762 ACGGTAGACATGGTGCTTTC 57.905 50.000 0.00 0.00 0.00 2.62
2877 3161 3.688694 TTACGGTAGACATGGTGCTTT 57.311 42.857 0.00 0.00 0.00 3.51
2878 3162 3.244284 TGTTTACGGTAGACATGGTGCTT 60.244 43.478 7.37 0.00 0.00 3.91
2879 3163 2.300723 TGTTTACGGTAGACATGGTGCT 59.699 45.455 7.37 0.00 0.00 4.40
2880 3164 2.690786 TGTTTACGGTAGACATGGTGC 58.309 47.619 7.37 0.00 0.00 5.01
2881 3165 5.873179 AAATGTTTACGGTAGACATGGTG 57.127 39.130 20.86 0.00 34.47 4.17
2882 3166 5.335348 GCAAAATGTTTACGGTAGACATGGT 60.335 40.000 20.86 11.85 34.47 3.55
2883 3167 5.092781 GCAAAATGTTTACGGTAGACATGG 58.907 41.667 20.86 15.32 34.47 3.66
2884 3168 5.694816 TGCAAAATGTTTACGGTAGACATG 58.305 37.500 20.86 13.39 34.47 3.21
2885 3169 5.950758 TGCAAAATGTTTACGGTAGACAT 57.049 34.783 16.14 16.14 35.65 3.06
2886 3170 5.752892 TTGCAAAATGTTTACGGTAGACA 57.247 34.783 13.11 13.11 0.00 3.41
2887 3171 8.632551 GTTATTTGCAAAATGTTTACGGTAGAC 58.367 33.333 17.19 2.09 0.00 2.59
2888 3172 8.350722 TGTTATTTGCAAAATGTTTACGGTAGA 58.649 29.630 17.19 0.00 0.00 2.59
2889 3173 8.421701 GTGTTATTTGCAAAATGTTTACGGTAG 58.578 33.333 17.19 0.00 0.00 3.18
2890 3174 8.136165 AGTGTTATTTGCAAAATGTTTACGGTA 58.864 29.630 17.19 0.00 0.00 4.02
2891 3175 6.981559 AGTGTTATTTGCAAAATGTTTACGGT 59.018 30.769 17.19 0.00 0.00 4.83
2892 3176 7.168302 TCAGTGTTATTTGCAAAATGTTTACGG 59.832 33.333 17.19 11.11 0.00 4.02
2893 3177 8.055609 TCAGTGTTATTTGCAAAATGTTTACG 57.944 30.769 17.19 2.26 0.00 3.18
2894 3178 9.631639 GTTCAGTGTTATTTGCAAAATGTTTAC 57.368 29.630 17.19 10.57 0.00 2.01
2895 3179 8.535592 CGTTCAGTGTTATTTGCAAAATGTTTA 58.464 29.630 17.19 0.21 0.00 2.01
2896 3180 7.397970 CGTTCAGTGTTATTTGCAAAATGTTT 58.602 30.769 17.19 1.30 0.00 2.83
2897 3181 6.019156 CCGTTCAGTGTTATTTGCAAAATGTT 60.019 34.615 17.19 1.72 0.00 2.71
2898 3182 5.461737 CCGTTCAGTGTTATTTGCAAAATGT 59.538 36.000 17.19 2.12 0.00 2.71
2899 3183 5.612276 GCCGTTCAGTGTTATTTGCAAAATG 60.612 40.000 17.19 2.30 0.00 2.32
2900 3184 4.447389 GCCGTTCAGTGTTATTTGCAAAAT 59.553 37.500 17.19 7.58 0.00 1.82
2901 3185 3.799420 GCCGTTCAGTGTTATTTGCAAAA 59.201 39.130 17.19 2.96 0.00 2.44
2902 3186 3.376540 GCCGTTCAGTGTTATTTGCAAA 58.623 40.909 15.44 15.44 0.00 3.68
2903 3187 2.603412 CGCCGTTCAGTGTTATTTGCAA 60.603 45.455 0.00 0.00 0.00 4.08
2904 3188 1.069568 CGCCGTTCAGTGTTATTTGCA 60.070 47.619 0.00 0.00 0.00 4.08
2905 3189 1.602191 CGCCGTTCAGTGTTATTTGC 58.398 50.000 0.00 0.00 0.00 3.68
2906 3190 1.801771 TCCGCCGTTCAGTGTTATTTG 59.198 47.619 0.00 0.00 0.00 2.32
2907 3191 2.172851 TCCGCCGTTCAGTGTTATTT 57.827 45.000 0.00 0.00 0.00 1.40
2908 3192 2.396590 ATCCGCCGTTCAGTGTTATT 57.603 45.000 0.00 0.00 0.00 1.40
2909 3193 2.396590 AATCCGCCGTTCAGTGTTAT 57.603 45.000 0.00 0.00 0.00 1.89
2910 3194 2.172851 AAATCCGCCGTTCAGTGTTA 57.827 45.000 0.00 0.00 0.00 2.41
2911 3195 2.172851 TAAATCCGCCGTTCAGTGTT 57.827 45.000 0.00 0.00 0.00 3.32
2912 3196 1.802365 GTTAAATCCGCCGTTCAGTGT 59.198 47.619 0.00 0.00 0.00 3.55
2913 3197 2.073816 AGTTAAATCCGCCGTTCAGTG 58.926 47.619 0.00 0.00 0.00 3.66
2914 3198 2.344025 GAGTTAAATCCGCCGTTCAGT 58.656 47.619 0.00 0.00 0.00 3.41
2915 3199 1.323534 CGAGTTAAATCCGCCGTTCAG 59.676 52.381 0.00 0.00 0.00 3.02
2916 3200 1.352114 CGAGTTAAATCCGCCGTTCA 58.648 50.000 0.00 0.00 0.00 3.18
2917 3201 0.648958 CCGAGTTAAATCCGCCGTTC 59.351 55.000 0.00 0.00 0.00 3.95
2918 3202 0.037046 ACCGAGTTAAATCCGCCGTT 60.037 50.000 0.00 0.00 0.00 4.44
2919 3203 0.037046 AACCGAGTTAAATCCGCCGT 60.037 50.000 0.00 0.00 0.00 5.68
2920 3204 0.372334 CAACCGAGTTAAATCCGCCG 59.628 55.000 0.00 0.00 0.00 6.46
2921 3205 1.664151 CTCAACCGAGTTAAATCCGCC 59.336 52.381 0.00 0.00 34.29 6.13
2922 3206 1.062148 GCTCAACCGAGTTAAATCCGC 59.938 52.381 0.00 0.00 41.71 5.54
2923 3207 2.093783 GTGCTCAACCGAGTTAAATCCG 59.906 50.000 0.00 0.00 41.71 4.18
2924 3208 2.093783 CGTGCTCAACCGAGTTAAATCC 59.906 50.000 0.00 0.00 41.71 3.01
2925 3209 2.735134 ACGTGCTCAACCGAGTTAAATC 59.265 45.455 0.00 0.00 41.71 2.17
2926 3210 2.762745 ACGTGCTCAACCGAGTTAAAT 58.237 42.857 0.00 0.00 41.71 1.40
2927 3211 2.228138 ACGTGCTCAACCGAGTTAAA 57.772 45.000 0.00 0.00 41.71 1.52
2928 3212 2.228138 AACGTGCTCAACCGAGTTAA 57.772 45.000 0.00 0.00 41.71 2.01
2929 3213 2.228138 AAACGTGCTCAACCGAGTTA 57.772 45.000 0.00 0.00 41.71 2.24
2930 3214 2.228138 TAAACGTGCTCAACCGAGTT 57.772 45.000 0.00 0.00 41.71 3.01
2931 3215 2.066262 CATAAACGTGCTCAACCGAGT 58.934 47.619 0.00 0.00 41.71 4.18
2932 3216 2.092211 GTCATAAACGTGCTCAACCGAG 59.908 50.000 0.00 0.00 42.66 4.63
2933 3217 2.063266 GTCATAAACGTGCTCAACCGA 58.937 47.619 0.00 0.00 0.00 4.69
2934 3218 1.795872 TGTCATAAACGTGCTCAACCG 59.204 47.619 0.00 0.00 0.00 4.44
2935 3219 2.412847 GCTGTCATAAACGTGCTCAACC 60.413 50.000 0.00 0.00 0.00 3.77
2936 3220 2.480419 AGCTGTCATAAACGTGCTCAAC 59.520 45.455 0.00 0.00 36.09 3.18
2937 3221 2.480037 CAGCTGTCATAAACGTGCTCAA 59.520 45.455 5.25 0.00 37.94 3.02
2938 3222 2.068519 CAGCTGTCATAAACGTGCTCA 58.931 47.619 5.25 0.00 37.94 4.26
2939 3223 1.394917 CCAGCTGTCATAAACGTGCTC 59.605 52.381 13.81 0.00 37.94 4.26
2940 3224 1.442769 CCAGCTGTCATAAACGTGCT 58.557 50.000 13.81 0.00 39.75 4.40
2941 3225 0.447801 CCCAGCTGTCATAAACGTGC 59.552 55.000 13.81 0.00 0.00 5.34
2942 3226 1.086696 CCCCAGCTGTCATAAACGTG 58.913 55.000 13.81 0.00 0.00 4.49
2943 3227 0.676782 GCCCCAGCTGTCATAAACGT 60.677 55.000 13.81 0.00 35.50 3.99
2944 3228 1.376609 GGCCCCAGCTGTCATAAACG 61.377 60.000 13.81 0.00 39.73 3.60
2945 3229 0.034089 AGGCCCCAGCTGTCATAAAC 60.034 55.000 13.81 0.00 39.73 2.01
2946 3230 0.704076 AAGGCCCCAGCTGTCATAAA 59.296 50.000 13.81 0.00 39.73 1.40
2947 3231 2.397815 AAGGCCCCAGCTGTCATAA 58.602 52.632 13.81 0.00 39.73 1.90
2948 3232 4.169452 AAGGCCCCAGCTGTCATA 57.831 55.556 13.81 0.00 39.73 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.