Multiple sequence alignment - TraesCS2D01G585400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G585400 chr2D 100.000 2288 0 0 1 2288 644388819 644391106 0.000000e+00 4226.0
1 TraesCS2D01G585400 chr2D 85.714 287 13 7 1704 1962 100425685 100425971 6.230000e-71 278.0
2 TraesCS2D01G585400 chr1D 96.829 1703 48 3 2 1703 423893347 423895044 0.000000e+00 2841.0
3 TraesCS2D01G585400 chr1D 94.766 917 36 7 793 1703 445568967 445569877 0.000000e+00 1417.0
4 TraesCS2D01G585400 chr5D 95.599 1704 49 5 2 1703 424049042 424047363 0.000000e+00 2708.0
5 TraesCS2D01G585400 chr5D 95.783 332 13 1 1958 2288 448433798 448433467 3.350000e-148 534.0
6 TraesCS2D01G585400 chr5D 95.166 331 14 2 1958 2287 448436758 448436429 2.600000e-144 521.0
7 TraesCS2D01G585400 chr5D 94.277 332 18 1 1958 2288 32143213 32142882 7.290000e-140 507.0
8 TraesCS2D01G585400 chr3D 95.038 1713 77 4 2 1712 5431461 5429755 0.000000e+00 2686.0
9 TraesCS2D01G585400 chr3D 95.015 1705 73 6 2 1702 121530721 121532417 0.000000e+00 2667.0
10 TraesCS2D01G585400 chr7B 92.895 1703 100 14 2 1703 639855960 639857642 0.000000e+00 2455.0
11 TraesCS2D01G585400 chr2B 92.790 1706 101 12 2 1703 412262352 412264039 0.000000e+00 2449.0
12 TraesCS2D01G585400 chr2A 94.637 1585 70 7 2 1580 706884757 706886332 0.000000e+00 2442.0
13 TraesCS2D01G585400 chr2A 94.562 331 17 1 1958 2287 753465278 753465608 5.640000e-141 510.0
14 TraesCS2D01G585400 chr2A 87.562 201 14 6 1787 1978 691128078 691128276 2.960000e-54 222.0
15 TraesCS2D01G585400 chr3B 92.669 1705 100 18 2 1703 745588848 745590530 0.000000e+00 2433.0
16 TraesCS2D01G585400 chr6B 92.569 1709 92 14 4 1703 711404601 711406283 0.000000e+00 2420.0
17 TraesCS2D01G585400 chr6B 96.809 94 2 1 1704 1797 27188099 27188191 3.040000e-34 156.0
18 TraesCS2D01G585400 chr6B 91.667 96 4 2 1705 1797 27189262 27189356 1.840000e-26 130.0
19 TraesCS2D01G585400 chr6B 95.833 48 2 0 1787 1834 27188202 27188249 6.780000e-11 78.7
20 TraesCS2D01G585400 chr3A 92.308 1235 64 10 472 1703 624176981 624178187 0.000000e+00 1725.0
21 TraesCS2D01G585400 chr3A 86.047 301 15 6 1704 1977 17899106 17899406 4.780000e-77 298.0
22 TraesCS2D01G585400 chr3A 85.714 301 16 6 1704 1977 17915082 17915382 2.220000e-75 292.0
23 TraesCS2D01G585400 chr1A 94.578 332 17 1 1958 2288 310871174 310871505 1.570000e-141 512.0
24 TraesCS2D01G585400 chr1A 93.353 331 20 2 1958 2287 564771866 564772195 2.640000e-134 488.0
25 TraesCS2D01G585400 chr1A 88.166 169 12 8 1834 1997 475623936 475624101 6.450000e-46 195.0
26 TraesCS2D01G585400 chr1A 87.574 169 13 8 1834 1997 504090222 504090387 3.000000e-44 189.0
27 TraesCS2D01G585400 chr7D 94.277 332 18 1 1958 2288 68437350 68437019 7.290000e-140 507.0
28 TraesCS2D01G585400 chr7D 93.007 143 8 2 1838 1978 109359619 109359477 8.280000e-50 207.0
29 TraesCS2D01G585400 chr6A 92.330 339 24 2 1952 2288 499214891 499214553 4.420000e-132 481.0
30 TraesCS2D01G585400 chr6A 95.833 144 5 1 1836 1978 498460990 498461133 4.920000e-57 231.0
31 TraesCS2D01G585400 chr7A 91.837 343 25 3 1949 2288 675130709 675131051 2.060000e-130 475.0
32 TraesCS2D01G585400 chr7A 88.272 162 15 4 1834 1992 172206932 172206772 8.340000e-45 191.0
33 TraesCS2D01G585400 chrUn 93.939 132 5 3 1836 1965 214477400 214477270 1.790000e-46 196.0
34 TraesCS2D01G585400 chr4A 96.809 94 2 1 1704 1797 665081945 665082037 3.040000e-34 156.0
35 TraesCS2D01G585400 chr1B 96.809 94 2 1 1704 1797 415110114 415110022 3.040000e-34 156.0
36 TraesCS2D01G585400 chr1B 96.809 94 2 1 1704 1797 415111513 415111421 3.040000e-34 156.0
37 TraesCS2D01G585400 chr1B 91.667 48 4 0 1787 1834 415111410 415111363 1.470000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G585400 chr2D 644388819 644391106 2287 False 4226.0 4226 100.0000 1 2288 1 chr2D.!!$F2 2287
1 TraesCS2D01G585400 chr1D 423893347 423895044 1697 False 2841.0 2841 96.8290 2 1703 1 chr1D.!!$F1 1701
2 TraesCS2D01G585400 chr1D 445568967 445569877 910 False 1417.0 1417 94.7660 793 1703 1 chr1D.!!$F2 910
3 TraesCS2D01G585400 chr5D 424047363 424049042 1679 True 2708.0 2708 95.5990 2 1703 1 chr5D.!!$R2 1701
4 TraesCS2D01G585400 chr5D 448433467 448436758 3291 True 527.5 534 95.4745 1958 2288 2 chr5D.!!$R3 330
5 TraesCS2D01G585400 chr3D 5429755 5431461 1706 True 2686.0 2686 95.0380 2 1712 1 chr3D.!!$R1 1710
6 TraesCS2D01G585400 chr3D 121530721 121532417 1696 False 2667.0 2667 95.0150 2 1702 1 chr3D.!!$F1 1700
7 TraesCS2D01G585400 chr7B 639855960 639857642 1682 False 2455.0 2455 92.8950 2 1703 1 chr7B.!!$F1 1701
8 TraesCS2D01G585400 chr2B 412262352 412264039 1687 False 2449.0 2449 92.7900 2 1703 1 chr2B.!!$F1 1701
9 TraesCS2D01G585400 chr2A 706884757 706886332 1575 False 2442.0 2442 94.6370 2 1580 1 chr2A.!!$F2 1578
10 TraesCS2D01G585400 chr3B 745588848 745590530 1682 False 2433.0 2433 92.6690 2 1703 1 chr3B.!!$F1 1701
11 TraesCS2D01G585400 chr6B 711404601 711406283 1682 False 2420.0 2420 92.5690 4 1703 1 chr6B.!!$F1 1699
12 TraesCS2D01G585400 chr3A 624176981 624178187 1206 False 1725.0 1725 92.3080 472 1703 1 chr3A.!!$F3 1231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.035056 CCTTCGCTGGGTCAGGAATT 60.035 55.0 6.82 0.0 31.21 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 5231 0.03101 GGAGTCCCATACCTCCCTGT 60.031 60.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.331132 GGTCGTCCTCGTCGTCCTT 61.331 63.158 0.00 0.00 38.33 3.36
346 347 0.035056 CCTTCGCTGGGTCAGGAATT 60.035 55.000 6.82 0.00 31.21 2.17
347 348 1.089920 CTTCGCTGGGTCAGGAATTG 58.910 55.000 0.00 0.00 31.21 2.32
428 429 4.301505 GCATGGAGCCGAAGTTCA 57.698 55.556 3.32 0.00 37.23 3.18
454 455 2.113860 CCTCCATGGTGTTGTCGAAT 57.886 50.000 12.58 0.00 0.00 3.34
535 536 2.349755 GGGTTGGCGTTGGAGCTA 59.650 61.111 0.00 0.00 37.29 3.32
718 722 0.397564 TCTGTGCAATGCCTGACTCA 59.602 50.000 1.53 0.00 0.00 3.41
940 945 1.478837 CGGCTACTACCATCAGGAGGA 60.479 57.143 0.00 0.00 38.69 3.71
941 946 2.819726 CGGCTACTACCATCAGGAGGAT 60.820 54.545 0.00 0.00 38.69 3.24
1094 1099 1.671379 GGAAGGTGACGGTCAAGCC 60.671 63.158 13.23 10.91 0.00 4.35
1160 1165 2.606725 CAGCCGTTCATCAGATCAAGAC 59.393 50.000 0.00 0.00 0.00 3.01
1331 1343 7.119605 AGCGTACTATCGAGTTATTCTAGTG 57.880 40.000 3.45 0.00 37.10 2.74
1352 1364 3.823873 TGGATGGTTTATGCGTTGAACTT 59.176 39.130 0.00 0.00 0.00 2.66
1369 1382 8.932791 CGTTGAACTTTTATATCTGTGGTACTT 58.067 33.333 0.00 0.00 0.00 2.24
1660 1680 2.416701 GCCAGACTGAGTAGAGAAGTGC 60.417 54.545 3.32 0.00 0.00 4.40
1703 1724 2.330041 GACAACCAAACACGCCCG 59.670 61.111 0.00 0.00 0.00 6.13
1708 1729 0.179051 AACCAAACACGCCCGAAGTA 60.179 50.000 0.00 0.00 0.00 2.24
1709 1730 0.601841 ACCAAACACGCCCGAAGTAG 60.602 55.000 0.00 0.00 0.00 2.57
1711 1732 1.223187 CAAACACGCCCGAAGTAGTT 58.777 50.000 0.00 0.00 0.00 2.24
1712 1733 1.070175 CAAACACGCCCGAAGTAGTTG 60.070 52.381 0.00 0.00 0.00 3.16
1713 1734 0.601841 AACACGCCCGAAGTAGTTGG 60.602 55.000 0.00 0.00 0.00 3.77
1714 1735 2.047560 ACGCCCGAAGTAGTTGGC 60.048 61.111 2.22 2.22 40.54 4.52
1715 1736 2.818274 CGCCCGAAGTAGTTGGCC 60.818 66.667 0.00 0.00 40.87 5.36
1716 1737 2.349755 GCCCGAAGTAGTTGGCCA 59.650 61.111 0.00 0.00 37.94 5.36
1717 1738 2.038837 GCCCGAAGTAGTTGGCCAC 61.039 63.158 3.88 0.00 37.94 5.01
1718 1739 1.740296 CCCGAAGTAGTTGGCCACG 60.740 63.158 3.88 3.23 0.00 4.94
1719 1740 1.005394 CCGAAGTAGTTGGCCACGT 60.005 57.895 3.88 0.00 0.00 4.49
1720 1741 1.012486 CCGAAGTAGTTGGCCACGTC 61.012 60.000 3.88 0.07 0.00 4.34
1721 1742 1.012486 CGAAGTAGTTGGCCACGTCC 61.012 60.000 3.88 0.00 0.00 4.79
1722 1743 0.320697 GAAGTAGTTGGCCACGTCCT 59.679 55.000 3.88 1.20 0.00 3.85
1723 1744 0.034896 AAGTAGTTGGCCACGTCCTG 59.965 55.000 3.88 0.00 0.00 3.86
1724 1745 1.375523 GTAGTTGGCCACGTCCTGG 60.376 63.158 3.88 0.00 44.08 4.45
1725 1746 1.534476 TAGTTGGCCACGTCCTGGA 60.534 57.895 3.88 0.00 43.95 3.86
1726 1747 0.907704 TAGTTGGCCACGTCCTGGAT 60.908 55.000 3.88 0.00 43.95 3.41
1727 1748 2.040544 GTTGGCCACGTCCTGGATG 61.041 63.158 3.88 14.35 43.95 3.51
1728 1749 2.525124 TTGGCCACGTCCTGGATGT 61.525 57.895 15.79 15.79 43.95 3.06
1729 1750 2.436646 GGCCACGTCCTGGATGTG 60.437 66.667 32.73 32.73 45.82 3.21
1732 1753 2.436646 CACGTCCTGGATGTGGGC 60.437 66.667 32.28 5.50 43.46 5.36
1734 1755 4.082523 CGTCCTGGATGTGGGCGT 62.083 66.667 7.79 0.00 46.30 5.68
1735 1756 2.351276 GTCCTGGATGTGGGCGTT 59.649 61.111 0.00 0.00 0.00 4.84
1736 1757 2.040544 GTCCTGGATGTGGGCGTTG 61.041 63.158 0.00 0.00 0.00 4.10
1737 1758 2.751436 CCTGGATGTGGGCGTTGG 60.751 66.667 0.00 0.00 0.00 3.77
1738 1759 3.443045 CTGGATGTGGGCGTTGGC 61.443 66.667 0.00 0.00 38.90 4.52
1741 1762 2.435234 GATGTGGGCGTTGGCGTA 60.435 61.111 0.00 0.00 41.24 4.42
1742 1763 2.435938 ATGTGGGCGTTGGCGTAG 60.436 61.111 0.00 0.00 41.24 3.51
1743 1764 3.969250 ATGTGGGCGTTGGCGTAGG 62.969 63.158 0.00 0.00 41.24 3.18
1744 1765 4.382320 GTGGGCGTTGGCGTAGGA 62.382 66.667 0.00 0.00 41.24 2.94
1745 1766 3.627952 TGGGCGTTGGCGTAGGAA 61.628 61.111 0.00 0.00 41.24 3.36
1746 1767 2.818274 GGGCGTTGGCGTAGGAAG 60.818 66.667 0.00 0.00 41.24 3.46
1747 1768 2.047560 GGCGTTGGCGTAGGAAGT 60.048 61.111 0.00 0.00 41.24 3.01
1748 1769 2.388232 GGCGTTGGCGTAGGAAGTG 61.388 63.158 0.00 0.00 41.24 3.16
1749 1770 2.388232 GCGTTGGCGTAGGAAGTGG 61.388 63.158 0.00 0.00 40.81 4.00
1750 1771 1.290955 CGTTGGCGTAGGAAGTGGA 59.709 57.895 0.00 0.00 0.00 4.02
1751 1772 0.108329 CGTTGGCGTAGGAAGTGGAT 60.108 55.000 0.00 0.00 0.00 3.41
1752 1773 1.653151 GTTGGCGTAGGAAGTGGATC 58.347 55.000 0.00 0.00 0.00 3.36
1753 1774 1.066430 GTTGGCGTAGGAAGTGGATCA 60.066 52.381 0.00 0.00 0.00 2.92
1754 1775 0.824109 TGGCGTAGGAAGTGGATCAG 59.176 55.000 0.00 0.00 0.00 2.90
1755 1776 0.105039 GGCGTAGGAAGTGGATCAGG 59.895 60.000 0.00 0.00 0.00 3.86
1756 1777 0.105039 GCGTAGGAAGTGGATCAGGG 59.895 60.000 0.00 0.00 0.00 4.45
1757 1778 1.486211 CGTAGGAAGTGGATCAGGGT 58.514 55.000 0.00 0.00 0.00 4.34
1758 1779 1.137086 CGTAGGAAGTGGATCAGGGTG 59.863 57.143 0.00 0.00 0.00 4.61
1759 1780 1.486726 GTAGGAAGTGGATCAGGGTGG 59.513 57.143 0.00 0.00 0.00 4.61
1760 1781 0.119155 AGGAAGTGGATCAGGGTGGA 59.881 55.000 0.00 0.00 0.00 4.02
1761 1782 1.216990 GGAAGTGGATCAGGGTGGAT 58.783 55.000 0.00 0.00 0.00 3.41
1762 1783 1.133976 GGAAGTGGATCAGGGTGGATG 60.134 57.143 0.00 0.00 0.00 3.51
1763 1784 0.921896 AAGTGGATCAGGGTGGATGG 59.078 55.000 0.00 0.00 0.00 3.51
1764 1785 1.152881 GTGGATCAGGGTGGATGGC 60.153 63.158 0.00 0.00 0.00 4.40
1765 1786 1.308128 TGGATCAGGGTGGATGGCT 60.308 57.895 0.00 0.00 0.00 4.75
1766 1787 0.920763 TGGATCAGGGTGGATGGCTT 60.921 55.000 0.00 0.00 0.00 4.35
1767 1788 0.466922 GGATCAGGGTGGATGGCTTG 60.467 60.000 0.00 0.00 0.00 4.01
1768 1789 0.466922 GATCAGGGTGGATGGCTTGG 60.467 60.000 0.00 0.00 0.00 3.61
1769 1790 2.578586 ATCAGGGTGGATGGCTTGGC 62.579 60.000 0.00 0.00 0.00 4.52
1795 1816 3.702048 GGGTGAGCGCCCTGTGTA 61.702 66.667 11.82 0.00 45.22 2.90
1796 1817 2.584608 GGTGAGCGCCCTGTGTAT 59.415 61.111 2.29 0.00 0.00 2.29
1797 1818 1.078426 GGTGAGCGCCCTGTGTATT 60.078 57.895 2.29 0.00 0.00 1.89
1798 1819 1.369091 GGTGAGCGCCCTGTGTATTG 61.369 60.000 2.29 0.00 0.00 1.90
1799 1820 0.391130 GTGAGCGCCCTGTGTATTGA 60.391 55.000 2.29 0.00 0.00 2.57
1800 1821 0.541392 TGAGCGCCCTGTGTATTGAT 59.459 50.000 2.29 0.00 0.00 2.57
1801 1822 1.221414 GAGCGCCCTGTGTATTGATC 58.779 55.000 2.29 0.00 0.00 2.92
1802 1823 0.541392 AGCGCCCTGTGTATTGATCA 59.459 50.000 2.29 0.00 0.00 2.92
1803 1824 0.940126 GCGCCCTGTGTATTGATCAG 59.060 55.000 0.00 0.00 0.00 2.90
1804 1825 0.940126 CGCCCTGTGTATTGATCAGC 59.060 55.000 0.00 0.00 0.00 4.26
1805 1826 0.940126 GCCCTGTGTATTGATCAGCG 59.060 55.000 0.00 0.00 0.00 5.18
1806 1827 0.940126 CCCTGTGTATTGATCAGCGC 59.060 55.000 0.00 0.00 0.00 5.92
1807 1828 0.578683 CCTGTGTATTGATCAGCGCG 59.421 55.000 0.00 0.00 0.00 6.86
1808 1829 0.578683 CTGTGTATTGATCAGCGCGG 59.421 55.000 8.83 0.00 0.00 6.46
1809 1830 0.108377 TGTGTATTGATCAGCGCGGT 60.108 50.000 4.23 4.23 0.00 5.68
1810 1831 0.301687 GTGTATTGATCAGCGCGGTG 59.698 55.000 31.22 31.22 0.00 4.94
1811 1832 0.108377 TGTATTGATCAGCGCGGTGT 60.108 50.000 34.29 22.89 0.00 4.16
1812 1833 0.301687 GTATTGATCAGCGCGGTGTG 59.698 55.000 34.29 13.75 0.00 3.82
1813 1834 0.809636 TATTGATCAGCGCGGTGTGG 60.810 55.000 34.29 12.97 0.00 4.17
1814 1835 2.803155 ATTGATCAGCGCGGTGTGGT 62.803 55.000 34.29 22.47 0.00 4.16
1815 1836 2.161078 TTGATCAGCGCGGTGTGGTA 62.161 55.000 34.29 18.34 0.00 3.25
1816 1837 2.125673 ATCAGCGCGGTGTGGTAC 60.126 61.111 34.29 2.82 0.00 3.34
1817 1838 3.982372 ATCAGCGCGGTGTGGTACG 62.982 63.158 34.29 10.66 0.00 3.67
1819 1840 3.364441 AGCGCGGTGTGGTACGTA 61.364 61.111 11.39 0.00 0.00 3.57
1820 1841 3.174573 GCGCGGTGTGGTACGTAC 61.175 66.667 17.56 17.56 0.00 3.67
1821 1842 2.504681 CGCGGTGTGGTACGTACC 60.505 66.667 33.42 33.42 46.62 3.34
1829 1850 2.100991 GGTACGTACCACCGAGCG 59.899 66.667 34.65 0.00 45.73 5.03
1830 1851 2.577911 GTACGTACCACCGAGCGC 60.578 66.667 15.00 0.00 0.00 5.92
1831 1852 3.814268 TACGTACCACCGAGCGCC 61.814 66.667 2.29 0.00 0.00 6.53
1846 1867 4.966787 GCCGGCCAAACCCAGTGA 62.967 66.667 18.11 0.00 33.26 3.41
1847 1868 2.203422 CCGGCCAAACCCAGTGAA 60.203 61.111 2.24 0.00 33.26 3.18
1848 1869 1.606313 CCGGCCAAACCCAGTGAAT 60.606 57.895 2.24 0.00 33.26 2.57
1849 1870 0.322997 CCGGCCAAACCCAGTGAATA 60.323 55.000 2.24 0.00 33.26 1.75
1850 1871 1.540267 CGGCCAAACCCAGTGAATAA 58.460 50.000 2.24 0.00 33.26 1.40
1851 1872 1.889829 CGGCCAAACCCAGTGAATAAA 59.110 47.619 2.24 0.00 33.26 1.40
1852 1873 2.094752 CGGCCAAACCCAGTGAATAAAG 60.095 50.000 2.24 0.00 33.26 1.85
1853 1874 2.233676 GGCCAAACCCAGTGAATAAAGG 59.766 50.000 0.00 0.00 0.00 3.11
1854 1875 2.897326 GCCAAACCCAGTGAATAAAGGT 59.103 45.455 0.00 0.00 0.00 3.50
1855 1876 3.323691 GCCAAACCCAGTGAATAAAGGTT 59.676 43.478 0.00 0.00 42.55 3.50
1856 1877 4.799255 GCCAAACCCAGTGAATAAAGGTTG 60.799 45.833 0.00 0.00 39.88 3.77
1857 1878 4.306600 CAAACCCAGTGAATAAAGGTTGC 58.693 43.478 0.00 0.00 39.88 4.17
1858 1879 2.525368 ACCCAGTGAATAAAGGTTGCC 58.475 47.619 0.00 0.00 0.00 4.52
1859 1880 2.158385 ACCCAGTGAATAAAGGTTGCCA 60.158 45.455 0.00 0.00 0.00 4.92
1860 1881 2.896685 CCCAGTGAATAAAGGTTGCCAA 59.103 45.455 0.00 0.00 0.00 4.52
1861 1882 3.056607 CCCAGTGAATAAAGGTTGCCAAG 60.057 47.826 0.00 0.00 0.00 3.61
1862 1883 3.826157 CCAGTGAATAAAGGTTGCCAAGA 59.174 43.478 0.00 0.00 0.00 3.02
1863 1884 4.463891 CCAGTGAATAAAGGTTGCCAAGAT 59.536 41.667 0.00 0.00 0.00 2.40
1864 1885 5.652014 CCAGTGAATAAAGGTTGCCAAGATA 59.348 40.000 0.00 0.00 0.00 1.98
1865 1886 6.404734 CCAGTGAATAAAGGTTGCCAAGATAC 60.405 42.308 0.00 0.00 0.00 2.24
1866 1887 6.150976 CAGTGAATAAAGGTTGCCAAGATACA 59.849 38.462 0.00 0.00 0.00 2.29
1867 1888 6.375455 AGTGAATAAAGGTTGCCAAGATACAG 59.625 38.462 0.00 0.00 0.00 2.74
1868 1889 5.652014 TGAATAAAGGTTGCCAAGATACAGG 59.348 40.000 0.00 0.00 0.00 4.00
1874 1895 3.577389 GCCAAGATACAGGCCAGTT 57.423 52.632 5.94 0.00 45.18 3.16
1875 1896 1.383523 GCCAAGATACAGGCCAGTTC 58.616 55.000 5.94 4.31 45.18 3.01
1876 1897 1.656652 CCAAGATACAGGCCAGTTCG 58.343 55.000 5.94 0.00 0.00 3.95
1877 1898 1.009829 CAAGATACAGGCCAGTTCGC 58.990 55.000 5.94 0.00 0.00 4.70
1904 1925 2.395690 CGTTCGTCGCCATTGCTC 59.604 61.111 0.00 0.00 34.43 4.26
1905 1926 2.785258 GTTCGTCGCCATTGCTCC 59.215 61.111 0.00 0.00 34.43 4.70
1906 1927 2.813474 TTCGTCGCCATTGCTCCG 60.813 61.111 0.00 0.00 34.43 4.63
1907 1928 3.289704 TTCGTCGCCATTGCTCCGA 62.290 57.895 0.00 0.00 36.09 4.55
1908 1929 3.257561 CGTCGCCATTGCTCCGAG 61.258 66.667 0.00 0.00 34.43 4.63
1909 1930 2.125512 GTCGCCATTGCTCCGAGT 60.126 61.111 0.00 0.00 34.43 4.18
1910 1931 1.741770 GTCGCCATTGCTCCGAGTT 60.742 57.895 0.00 0.00 34.43 3.01
1911 1932 1.447838 TCGCCATTGCTCCGAGTTC 60.448 57.895 0.00 0.00 34.43 3.01
1912 1933 2.802667 CGCCATTGCTCCGAGTTCG 61.803 63.158 0.00 0.00 35.50 3.95
1913 1934 1.741770 GCCATTGCTCCGAGTTCGT 60.742 57.895 0.48 0.00 34.02 3.85
1914 1935 1.970917 GCCATTGCTCCGAGTTCGTG 61.971 60.000 0.48 0.00 34.02 4.35
1915 1936 1.421485 CATTGCTCCGAGTTCGTGC 59.579 57.895 0.48 5.48 37.74 5.34
1916 1937 1.016130 CATTGCTCCGAGTTCGTGCT 61.016 55.000 14.41 0.00 37.64 4.40
1917 1938 0.737715 ATTGCTCCGAGTTCGTGCTC 60.738 55.000 14.41 0.17 37.64 4.26
1923 1944 3.550656 GAGTTCGTGCTCGGGTTG 58.449 61.111 8.49 0.00 37.69 3.77
1924 1945 1.006571 GAGTTCGTGCTCGGGTTGA 60.007 57.895 8.49 0.00 37.69 3.18
1935 1956 3.609103 CTCGGGTTGAGTTTCTTTGTG 57.391 47.619 0.00 0.00 40.03 3.33
1936 1957 1.673920 TCGGGTTGAGTTTCTTTGTGC 59.326 47.619 0.00 0.00 0.00 4.57
1937 1958 1.403679 CGGGTTGAGTTTCTTTGTGCA 59.596 47.619 0.00 0.00 0.00 4.57
1938 1959 2.034558 CGGGTTGAGTTTCTTTGTGCAT 59.965 45.455 0.00 0.00 0.00 3.96
1939 1960 3.252215 CGGGTTGAGTTTCTTTGTGCATA 59.748 43.478 0.00 0.00 0.00 3.14
1940 1961 4.082787 CGGGTTGAGTTTCTTTGTGCATAT 60.083 41.667 0.00 0.00 0.00 1.78
1941 1962 5.163513 GGGTTGAGTTTCTTTGTGCATATG 58.836 41.667 0.00 0.00 0.00 1.78
1942 1963 5.163513 GGTTGAGTTTCTTTGTGCATATGG 58.836 41.667 4.56 0.00 0.00 2.74
1943 1964 5.278957 GGTTGAGTTTCTTTGTGCATATGGT 60.279 40.000 4.56 0.00 0.00 3.55
1944 1965 6.215845 GTTGAGTTTCTTTGTGCATATGGTT 58.784 36.000 4.56 0.00 0.00 3.67
1945 1966 6.403866 TGAGTTTCTTTGTGCATATGGTTT 57.596 33.333 4.56 0.00 0.00 3.27
1946 1967 6.446318 TGAGTTTCTTTGTGCATATGGTTTC 58.554 36.000 4.56 0.00 0.00 2.78
1947 1968 5.783111 AGTTTCTTTGTGCATATGGTTTCC 58.217 37.500 4.56 0.00 0.00 3.13
1948 1969 4.433186 TTCTTTGTGCATATGGTTTCCG 57.567 40.909 4.56 0.00 0.00 4.30
1949 1970 2.752354 TCTTTGTGCATATGGTTTCCGG 59.248 45.455 4.56 0.00 0.00 5.14
1950 1971 1.468985 TTGTGCATATGGTTTCCGGG 58.531 50.000 0.00 0.00 0.00 5.73
1951 1972 0.329931 TGTGCATATGGTTTCCGGGT 59.670 50.000 0.00 0.00 0.00 5.28
1952 1973 1.272203 TGTGCATATGGTTTCCGGGTT 60.272 47.619 0.00 0.00 0.00 4.11
1953 1974 1.822371 GTGCATATGGTTTCCGGGTTT 59.178 47.619 0.00 0.00 0.00 3.27
1954 1975 1.821753 TGCATATGGTTTCCGGGTTTG 59.178 47.619 0.00 0.00 0.00 2.93
1955 1976 1.470805 GCATATGGTTTCCGGGTTTGC 60.471 52.381 0.00 0.00 0.00 3.68
1956 1977 1.099689 ATATGGTTTCCGGGTTTGCG 58.900 50.000 0.00 0.00 0.00 4.85
1962 1983 1.945354 TTTCCGGGTTTGCGCAACAA 61.945 50.000 24.99 6.33 37.07 2.83
1967 1988 1.569003 GGTTTGCGCAACAATTGGC 59.431 52.632 24.99 6.95 38.31 4.52
1978 1999 3.508762 CAACAATTGGCATCAGAGCTTC 58.491 45.455 10.83 0.00 34.17 3.86
2116 5097 4.787871 GCGCAGGCTATCCTTGAT 57.212 55.556 0.30 0.00 41.93 2.57
2221 5203 4.101448 GGGCTGCGGAGGATGTGT 62.101 66.667 5.93 0.00 0.00 3.72
2247 5229 2.280592 GTGGCGACGAAACCCACT 60.281 61.111 13.22 0.00 44.32 4.00
2249 5231 2.029964 GGCGACGAAACCCACTGA 59.970 61.111 0.00 0.00 0.00 3.41
2273 5255 1.415200 GAGGTATGGGACTCCCTGAC 58.585 60.000 15.64 12.12 45.70 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 4.710167 TCGACCTCGACTCCGCCA 62.710 66.667 0.00 0.00 44.22 5.69
346 347 0.681733 AAGAAGAGCTGAAGACGCCA 59.318 50.000 0.00 0.00 0.00 5.69
347 348 1.802069 AAAGAAGAGCTGAAGACGCC 58.198 50.000 0.00 0.00 0.00 5.68
448 449 0.794473 GTGACCGGACCAAATTCGAC 59.206 55.000 9.46 0.00 0.00 4.20
454 455 2.112297 GCTGGTGACCGGACCAAA 59.888 61.111 16.12 0.00 45.60 3.28
718 722 2.998670 CTCGATCTGCACACAAGTCATT 59.001 45.455 0.00 0.00 0.00 2.57
940 945 0.251922 AAGTGAGTTGGGCCATGCAT 60.252 50.000 7.26 0.00 0.00 3.96
941 946 0.895100 GAAGTGAGTTGGGCCATGCA 60.895 55.000 7.26 2.81 0.00 3.96
942 947 0.610232 AGAAGTGAGTTGGGCCATGC 60.610 55.000 7.26 3.37 0.00 4.06
943 948 1.171308 CAGAAGTGAGTTGGGCCATG 58.829 55.000 7.26 0.00 0.00 3.66
1040 1045 1.768275 TGTTCCTGAGCTTGAACTCCA 59.232 47.619 19.17 0.00 41.10 3.86
1094 1099 2.106131 TCATCGGCCCGTTCATCG 59.894 61.111 1.63 0.00 39.52 3.84
1160 1165 1.079405 AACGTCACCATGTAGCCGG 60.079 57.895 0.00 0.00 0.00 6.13
1277 1282 2.365105 CCCGGCCCTACTCCTTGA 60.365 66.667 0.00 0.00 0.00 3.02
1325 1331 4.081365 TCAACGCATAAACCATCCACTAGA 60.081 41.667 0.00 0.00 0.00 2.43
1331 1343 4.434713 AAGTTCAACGCATAAACCATCC 57.565 40.909 0.00 0.00 0.00 3.51
1660 1680 1.929806 AACAGTGCCTGCATCGCATG 61.930 55.000 11.36 12.07 38.13 4.06
1703 1724 0.320697 AGGACGTGGCCAACTACTTC 59.679 55.000 7.24 0.00 0.00 3.01
1713 1734 3.976701 CCCACATCCAGGACGTGGC 62.977 68.421 26.95 0.00 43.51 5.01
1714 1735 2.268920 CCCACATCCAGGACGTGG 59.731 66.667 25.65 25.65 44.32 4.94
1715 1736 2.436646 GCCCACATCCAGGACGTG 60.437 66.667 8.83 8.83 0.00 4.49
1716 1737 4.082523 CGCCCACATCCAGGACGT 62.083 66.667 0.00 0.00 0.00 4.34
1717 1738 3.605749 AACGCCCACATCCAGGACG 62.606 63.158 0.00 0.00 0.00 4.79
1718 1739 2.040544 CAACGCCCACATCCAGGAC 61.041 63.158 0.00 0.00 0.00 3.85
1719 1740 2.350895 CAACGCCCACATCCAGGA 59.649 61.111 0.00 0.00 0.00 3.86
1720 1741 2.751436 CCAACGCCCACATCCAGG 60.751 66.667 0.00 0.00 0.00 4.45
1721 1742 3.443045 GCCAACGCCCACATCCAG 61.443 66.667 0.00 0.00 0.00 3.86
1723 1744 3.961838 TACGCCAACGCCCACATCC 62.962 63.158 0.00 0.00 45.53 3.51
1724 1745 2.435234 TACGCCAACGCCCACATC 60.435 61.111 0.00 0.00 45.53 3.06
1725 1746 2.435938 CTACGCCAACGCCCACAT 60.436 61.111 0.00 0.00 45.53 3.21
1726 1747 4.690719 CCTACGCCAACGCCCACA 62.691 66.667 0.00 0.00 45.53 4.17
1727 1748 3.887335 TTCCTACGCCAACGCCCAC 62.887 63.158 0.00 0.00 45.53 4.61
1728 1749 3.599285 CTTCCTACGCCAACGCCCA 62.599 63.158 0.00 0.00 45.53 5.36
1729 1750 2.818274 CTTCCTACGCCAACGCCC 60.818 66.667 0.00 0.00 45.53 6.13
1730 1751 2.047560 ACTTCCTACGCCAACGCC 60.048 61.111 0.00 0.00 45.53 5.68
1731 1752 2.388232 CCACTTCCTACGCCAACGC 61.388 63.158 0.00 0.00 45.53 4.84
1733 1754 1.066430 TGATCCACTTCCTACGCCAAC 60.066 52.381 0.00 0.00 0.00 3.77
1734 1755 1.207089 CTGATCCACTTCCTACGCCAA 59.793 52.381 0.00 0.00 0.00 4.52
1735 1756 0.824109 CTGATCCACTTCCTACGCCA 59.176 55.000 0.00 0.00 0.00 5.69
1736 1757 0.105039 CCTGATCCACTTCCTACGCC 59.895 60.000 0.00 0.00 0.00 5.68
1737 1758 0.105039 CCCTGATCCACTTCCTACGC 59.895 60.000 0.00 0.00 0.00 4.42
1738 1759 1.137086 CACCCTGATCCACTTCCTACG 59.863 57.143 0.00 0.00 0.00 3.51
1739 1760 1.486726 CCACCCTGATCCACTTCCTAC 59.513 57.143 0.00 0.00 0.00 3.18
1740 1761 1.364678 TCCACCCTGATCCACTTCCTA 59.635 52.381 0.00 0.00 0.00 2.94
1741 1762 0.119155 TCCACCCTGATCCACTTCCT 59.881 55.000 0.00 0.00 0.00 3.36
1742 1763 1.133976 CATCCACCCTGATCCACTTCC 60.134 57.143 0.00 0.00 0.00 3.46
1743 1764 1.133976 CCATCCACCCTGATCCACTTC 60.134 57.143 0.00 0.00 0.00 3.01
1744 1765 0.921896 CCATCCACCCTGATCCACTT 59.078 55.000 0.00 0.00 0.00 3.16
1745 1766 1.639635 GCCATCCACCCTGATCCACT 61.640 60.000 0.00 0.00 0.00 4.00
1746 1767 1.152881 GCCATCCACCCTGATCCAC 60.153 63.158 0.00 0.00 0.00 4.02
1747 1768 0.920763 AAGCCATCCACCCTGATCCA 60.921 55.000 0.00 0.00 0.00 3.41
1748 1769 0.466922 CAAGCCATCCACCCTGATCC 60.467 60.000 0.00 0.00 0.00 3.36
1749 1770 0.466922 CCAAGCCATCCACCCTGATC 60.467 60.000 0.00 0.00 0.00 2.92
1750 1771 1.616921 CCAAGCCATCCACCCTGAT 59.383 57.895 0.00 0.00 0.00 2.90
1751 1772 3.089838 CCAAGCCATCCACCCTGA 58.910 61.111 0.00 0.00 0.00 3.86
1752 1773 2.757099 GCCAAGCCATCCACCCTG 60.757 66.667 0.00 0.00 0.00 4.45
1779 1800 1.078426 AATACACAGGGCGCTCACC 60.078 57.895 11.40 0.19 0.00 4.02
1780 1801 0.391130 TCAATACACAGGGCGCTCAC 60.391 55.000 11.40 0.00 0.00 3.51
1781 1802 0.541392 ATCAATACACAGGGCGCTCA 59.459 50.000 11.40 0.00 0.00 4.26
1782 1803 1.221414 GATCAATACACAGGGCGCTC 58.779 55.000 7.64 1.48 0.00 5.03
1783 1804 0.541392 TGATCAATACACAGGGCGCT 59.459 50.000 7.64 0.00 0.00 5.92
1784 1805 0.940126 CTGATCAATACACAGGGCGC 59.060 55.000 0.00 0.00 0.00 6.53
1785 1806 0.940126 GCTGATCAATACACAGGGCG 59.060 55.000 0.00 0.00 33.00 6.13
1786 1807 0.940126 CGCTGATCAATACACAGGGC 59.060 55.000 0.00 0.00 37.66 5.19
1787 1808 0.940126 GCGCTGATCAATACACAGGG 59.060 55.000 0.00 0.00 43.85 4.45
1788 1809 0.578683 CGCGCTGATCAATACACAGG 59.421 55.000 5.56 0.00 33.00 4.00
1789 1810 0.578683 CCGCGCTGATCAATACACAG 59.421 55.000 5.56 0.00 35.14 3.66
1790 1811 0.108377 ACCGCGCTGATCAATACACA 60.108 50.000 5.61 0.00 0.00 3.72
1791 1812 0.301687 CACCGCGCTGATCAATACAC 59.698 55.000 5.61 0.00 0.00 2.90
1792 1813 0.108377 ACACCGCGCTGATCAATACA 60.108 50.000 8.71 0.00 0.00 2.29
1793 1814 0.301687 CACACCGCGCTGATCAATAC 59.698 55.000 8.71 0.00 0.00 1.89
1794 1815 0.809636 CCACACCGCGCTGATCAATA 60.810 55.000 8.71 0.00 0.00 1.90
1795 1816 2.108514 CCACACCGCGCTGATCAAT 61.109 57.895 8.71 0.00 0.00 2.57
1796 1817 2.161078 TACCACACCGCGCTGATCAA 62.161 55.000 8.71 0.00 0.00 2.57
1797 1818 2.641277 TACCACACCGCGCTGATCA 61.641 57.895 8.71 0.00 0.00 2.92
1798 1819 2.165301 GTACCACACCGCGCTGATC 61.165 63.158 8.71 0.00 0.00 2.92
1799 1820 2.125673 GTACCACACCGCGCTGAT 60.126 61.111 8.71 0.00 0.00 2.90
1800 1821 4.710695 CGTACCACACCGCGCTGA 62.711 66.667 8.71 0.00 0.00 4.26
1801 1822 3.613952 TACGTACCACACCGCGCTG 62.614 63.158 5.56 0.00 0.00 5.18
1802 1823 3.364441 TACGTACCACACCGCGCT 61.364 61.111 5.56 0.00 0.00 5.92
1803 1824 3.174573 GTACGTACCACACCGCGC 61.175 66.667 15.00 0.00 0.00 6.86
1804 1825 2.504681 GGTACGTACCACACCGCG 60.505 66.667 34.65 0.00 45.73 6.46
1812 1833 2.100991 CGCTCGGTGGTACGTACC 59.899 66.667 33.42 33.42 46.62 3.34
1813 1834 2.577911 GCGCTCGGTGGTACGTAC 60.578 66.667 17.56 17.56 34.94 3.67
1814 1835 3.814268 GGCGCTCGGTGGTACGTA 61.814 66.667 7.64 0.00 34.94 3.57
1829 1850 4.966787 TCACTGGGTTTGGCCGGC 62.967 66.667 21.18 21.18 38.44 6.13
1830 1851 0.322997 TATTCACTGGGTTTGGCCGG 60.323 55.000 0.00 0.00 38.44 6.13
1831 1852 1.540267 TTATTCACTGGGTTTGGCCG 58.460 50.000 0.00 0.00 38.44 6.13
1832 1853 2.233676 CCTTTATTCACTGGGTTTGGCC 59.766 50.000 0.00 0.00 0.00 5.36
1833 1854 2.897326 ACCTTTATTCACTGGGTTTGGC 59.103 45.455 0.00 0.00 0.00 4.52
1834 1855 4.799255 GCAACCTTTATTCACTGGGTTTGG 60.799 45.833 0.00 0.00 38.08 3.28
1835 1856 4.306600 GCAACCTTTATTCACTGGGTTTG 58.693 43.478 0.00 0.00 38.08 2.93
1836 1857 3.323691 GGCAACCTTTATTCACTGGGTTT 59.676 43.478 0.00 0.00 38.08 3.27
1837 1858 2.897326 GGCAACCTTTATTCACTGGGTT 59.103 45.455 0.00 0.00 40.39 4.11
1838 1859 2.158385 TGGCAACCTTTATTCACTGGGT 60.158 45.455 0.00 0.00 0.00 4.51
1839 1860 2.524306 TGGCAACCTTTATTCACTGGG 58.476 47.619 0.00 0.00 0.00 4.45
1840 1861 3.826157 TCTTGGCAACCTTTATTCACTGG 59.174 43.478 0.00 0.00 0.00 4.00
1841 1862 5.649782 ATCTTGGCAACCTTTATTCACTG 57.350 39.130 0.00 0.00 0.00 3.66
1842 1863 6.245408 TGTATCTTGGCAACCTTTATTCACT 58.755 36.000 0.00 0.00 0.00 3.41
1843 1864 6.404734 CCTGTATCTTGGCAACCTTTATTCAC 60.405 42.308 0.00 0.00 0.00 3.18
1844 1865 5.652014 CCTGTATCTTGGCAACCTTTATTCA 59.348 40.000 0.00 0.00 0.00 2.57
1845 1866 6.136541 CCTGTATCTTGGCAACCTTTATTC 57.863 41.667 0.00 0.00 0.00 1.75
1857 1878 1.656652 CGAACTGGCCTGTATCTTGG 58.343 55.000 16.48 0.00 0.00 3.61
1858 1879 1.009829 GCGAACTGGCCTGTATCTTG 58.990 55.000 16.48 5.80 0.00 3.02
1859 1880 3.460648 GCGAACTGGCCTGTATCTT 57.539 52.632 16.48 0.00 0.00 2.40
1889 1910 3.289704 TCGGAGCAATGGCGACGAA 62.290 57.895 11.01 0.00 45.21 3.85
1894 1915 2.802667 CGAACTCGGAGCAATGGCG 61.803 63.158 4.58 0.00 39.55 5.69
1895 1916 1.741770 ACGAACTCGGAGCAATGGC 60.742 57.895 4.58 0.00 44.95 4.40
1896 1917 1.970917 GCACGAACTCGGAGCAATGG 61.971 60.000 4.58 0.00 44.95 3.16
1897 1918 1.016130 AGCACGAACTCGGAGCAATG 61.016 55.000 17.17 0.08 43.51 2.82
1898 1919 0.737715 GAGCACGAACTCGGAGCAAT 60.738 55.000 17.17 0.00 43.51 3.56
1899 1920 1.372997 GAGCACGAACTCGGAGCAA 60.373 57.895 17.17 0.00 43.51 3.91
1900 1921 2.258591 GAGCACGAACTCGGAGCA 59.741 61.111 17.17 0.00 43.51 4.26
1906 1927 1.006571 TCAACCCGAGCACGAACTC 60.007 57.895 4.70 0.00 42.66 3.01
1907 1928 1.006102 CTCAACCCGAGCACGAACT 60.006 57.895 4.70 0.00 42.66 3.01
1908 1929 0.878961 AACTCAACCCGAGCACGAAC 60.879 55.000 4.70 0.00 46.63 3.95
1909 1930 0.179067 AAACTCAACCCGAGCACGAA 60.179 50.000 4.70 0.00 46.63 3.85
1910 1931 0.599204 GAAACTCAACCCGAGCACGA 60.599 55.000 4.70 0.00 46.63 4.35
1911 1932 0.600255 AGAAACTCAACCCGAGCACG 60.600 55.000 0.00 0.00 46.63 5.34
1912 1933 1.594331 AAGAAACTCAACCCGAGCAC 58.406 50.000 0.00 0.00 46.63 4.40
1913 1934 1.946768 CAAAGAAACTCAACCCGAGCA 59.053 47.619 0.00 0.00 46.63 4.26
1914 1935 1.947456 ACAAAGAAACTCAACCCGAGC 59.053 47.619 0.00 0.00 46.63 5.03
1916 1937 1.673920 GCACAAAGAAACTCAACCCGA 59.326 47.619 0.00 0.00 0.00 5.14
1917 1938 1.403679 TGCACAAAGAAACTCAACCCG 59.596 47.619 0.00 0.00 0.00 5.28
1918 1939 3.733443 ATGCACAAAGAAACTCAACCC 57.267 42.857 0.00 0.00 0.00 4.11
1919 1940 5.163513 CCATATGCACAAAGAAACTCAACC 58.836 41.667 0.00 0.00 0.00 3.77
1920 1941 5.772521 ACCATATGCACAAAGAAACTCAAC 58.227 37.500 0.00 0.00 0.00 3.18
1921 1942 6.403866 AACCATATGCACAAAGAAACTCAA 57.596 33.333 0.00 0.00 0.00 3.02
1922 1943 6.403866 AAACCATATGCACAAAGAAACTCA 57.596 33.333 0.00 0.00 0.00 3.41
1923 1944 5.863935 GGAAACCATATGCACAAAGAAACTC 59.136 40.000 0.00 0.00 0.00 3.01
1924 1945 5.564651 CGGAAACCATATGCACAAAGAAACT 60.565 40.000 0.00 0.00 0.00 2.66
1925 1946 4.621034 CGGAAACCATATGCACAAAGAAAC 59.379 41.667 0.00 0.00 0.00 2.78
1926 1947 4.321601 CCGGAAACCATATGCACAAAGAAA 60.322 41.667 0.00 0.00 0.00 2.52
1927 1948 3.192422 CCGGAAACCATATGCACAAAGAA 59.808 43.478 0.00 0.00 0.00 2.52
1928 1949 2.752354 CCGGAAACCATATGCACAAAGA 59.248 45.455 0.00 0.00 0.00 2.52
1929 1950 2.159254 CCCGGAAACCATATGCACAAAG 60.159 50.000 0.73 0.00 0.00 2.77
1930 1951 1.821753 CCCGGAAACCATATGCACAAA 59.178 47.619 0.73 0.00 0.00 2.83
1931 1952 1.272203 ACCCGGAAACCATATGCACAA 60.272 47.619 0.73 0.00 0.00 3.33
1932 1953 0.329931 ACCCGGAAACCATATGCACA 59.670 50.000 0.73 0.00 0.00 4.57
1933 1954 1.470051 AACCCGGAAACCATATGCAC 58.530 50.000 0.73 0.00 0.00 4.57
1934 1955 1.821753 CAAACCCGGAAACCATATGCA 59.178 47.619 0.73 0.00 0.00 3.96
1935 1956 1.470805 GCAAACCCGGAAACCATATGC 60.471 52.381 0.73 0.00 0.00 3.14
1936 1957 1.202245 CGCAAACCCGGAAACCATATG 60.202 52.381 0.73 0.00 0.00 1.78
1937 1958 1.099689 CGCAAACCCGGAAACCATAT 58.900 50.000 0.73 0.00 0.00 1.78
1938 1959 1.587933 GCGCAAACCCGGAAACCATA 61.588 55.000 0.73 0.00 0.00 2.74
1939 1960 2.926420 GCGCAAACCCGGAAACCAT 61.926 57.895 0.73 0.00 0.00 3.55
1940 1961 3.597728 GCGCAAACCCGGAAACCA 61.598 61.111 0.73 0.00 0.00 3.67
1941 1962 3.140225 TTGCGCAAACCCGGAAACC 62.140 57.895 22.78 0.00 35.63 3.27
1942 1963 1.947146 GTTGCGCAAACCCGGAAAC 60.947 57.895 26.87 5.77 40.14 2.78
1943 1964 1.945354 TTGTTGCGCAAACCCGGAAA 61.945 50.000 26.87 7.94 40.14 3.13
1944 1965 1.739338 ATTGTTGCGCAAACCCGGAA 61.739 50.000 26.87 10.95 40.91 4.30
1945 1966 1.739338 AATTGTTGCGCAAACCCGGA 61.739 50.000 26.87 7.57 40.91 5.14
1946 1967 1.300542 AATTGTTGCGCAAACCCGG 60.301 52.632 26.87 0.00 40.91 5.73
1947 1968 1.555741 CCAATTGTTGCGCAAACCCG 61.556 55.000 26.87 12.28 40.91 5.28
1948 1969 1.840630 GCCAATTGTTGCGCAAACCC 61.841 55.000 26.87 13.60 40.91 4.11
1949 1970 1.156645 TGCCAATTGTTGCGCAAACC 61.157 50.000 26.87 14.41 40.91 3.27
1950 1971 0.867086 ATGCCAATTGTTGCGCAAAC 59.133 45.000 26.87 18.86 40.91 2.93
1951 1972 1.146637 GATGCCAATTGTTGCGCAAA 58.853 45.000 26.87 11.27 40.91 3.68
1952 1973 0.033090 TGATGCCAATTGTTGCGCAA 59.967 45.000 21.02 21.02 39.22 4.85
1953 1974 0.388778 CTGATGCCAATTGTTGCGCA 60.389 50.000 5.66 5.66 39.77 6.09
1954 1975 0.109179 TCTGATGCCAATTGTTGCGC 60.109 50.000 0.00 0.00 0.00 6.09
1955 1976 1.904144 CTCTGATGCCAATTGTTGCG 58.096 50.000 4.43 0.00 0.00 4.85
1956 1977 1.203994 AGCTCTGATGCCAATTGTTGC 59.796 47.619 4.43 2.10 0.00 4.17
1962 1983 1.284198 ACCTGAAGCTCTGATGCCAAT 59.716 47.619 0.00 0.00 0.00 3.16
1967 1988 1.649664 CCGAACCTGAAGCTCTGATG 58.350 55.000 0.00 0.00 0.00 3.07
1978 1999 4.821589 GGCGAGCTCCCGAACCTG 62.822 72.222 8.47 0.00 0.00 4.00
2001 4982 0.958382 GTGTGGAACCAGCGCCATTA 60.958 55.000 2.29 0.00 36.41 1.90
2036 5017 1.418908 ATCCCCATGGACACCGATCC 61.419 60.000 15.22 0.00 45.58 3.36
2191 5172 2.039624 AGCCCCGACAGGATCAGT 59.960 61.111 0.00 0.00 41.02 3.41
2221 5203 4.717629 CGTCGCCACCGAGAGCAA 62.718 66.667 0.00 0.00 45.38 3.91
2247 5229 0.716591 AGTCCCATACCTCCCTGTCA 59.283 55.000 0.00 0.00 0.00 3.58
2249 5231 0.031010 GGAGTCCCATACCTCCCTGT 60.031 60.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.