Multiple sequence alignment - TraesCS2D01G585300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G585300 chr2D 100.000 4025 0 0 1 4025 644376843 644372819 0.000000e+00 7433.0
1 TraesCS2D01G585300 chr2D 89.182 758 50 10 809 1553 97649638 97648900 0.000000e+00 917.0
2 TraesCS2D01G585300 chr2D 89.327 684 44 7 797 1466 453724658 453725326 0.000000e+00 832.0
3 TraesCS2D01G585300 chr2D 85.962 634 56 9 2085 2710 453725781 453726389 0.000000e+00 647.0
4 TraesCS2D01G585300 chr2D 88.194 432 47 1 1196 1623 453724215 453724646 2.770000e-141 512.0
5 TraesCS2D01G585300 chr2D 86.797 462 38 11 1451 1904 453725343 453725789 1.000000e-135 494.0
6 TraesCS2D01G585300 chr2D 86.111 432 55 2 1199 1626 97650092 97649662 1.020000e-125 460.0
7 TraesCS2D01G585300 chr2D 91.120 259 21 2 3276 3532 132721484 132721742 2.300000e-92 350.0
8 TraesCS2D01G585300 chr2D 91.085 258 21 2 3277 3532 325807320 325807577 8.280000e-92 348.0
9 TraesCS2D01G585300 chr2B 93.358 2996 129 25 718 3659 791470691 791473670 0.000000e+00 4366.0
10 TraesCS2D01G585300 chr2B 96.354 384 10 4 3643 4025 791476240 791476620 2.640000e-176 628.0
11 TraesCS2D01G585300 chr2A 94.653 2525 106 10 715 3214 769502479 769499959 0.000000e+00 3888.0
12 TraesCS2D01G585300 chr2A 90.231 389 31 6 3640 4025 769499805 769499421 6.010000e-138 501.0
13 TraesCS2D01G585300 chr2A 87.407 270 27 4 12 276 769502972 769502705 1.820000e-78 303.0
14 TraesCS2D01G585300 chr6A 81.515 1320 82 63 809 2069 612106015 612104799 0.000000e+00 937.0
15 TraesCS2D01G585300 chr1A 88.860 772 54 12 797 1553 103314923 103314169 0.000000e+00 920.0
16 TraesCS2D01G585300 chr1A 87.755 343 30 2 1044 1386 65829798 65830128 1.360000e-104 390.0
17 TraesCS2D01G585300 chr1A 88.693 283 8 12 797 1058 65822824 65823103 1.400000e-84 324.0
18 TraesCS2D01G585300 chr1B 88.477 729 74 4 1193 1914 491700034 491700759 0.000000e+00 872.0
19 TraesCS2D01G585300 chr3B 87.322 773 58 15 797 1553 434228194 434227446 0.000000e+00 848.0
20 TraesCS2D01G585300 chr5B 87.176 772 61 13 797 1553 45143663 45142915 0.000000e+00 843.0
21 TraesCS2D01G585300 chr7B 87.607 702 77 4 1220 1914 667434562 667433864 0.000000e+00 806.0
22 TraesCS2D01G585300 chr5A 86.145 729 73 13 1193 1914 419362204 419362911 0.000000e+00 761.0
23 TraesCS2D01G585300 chr7A 87.573 684 49 11 797 1459 709576264 709576932 0.000000e+00 760.0
24 TraesCS2D01G585300 chr4A 89.636 357 37 0 1558 1914 541324750 541324394 4.740000e-124 455.0
25 TraesCS2D01G585300 chr5D 93.023 258 16 2 3277 3532 451067428 451067171 3.800000e-100 375.0
26 TraesCS2D01G585300 chr5D 78.161 174 21 13 3854 4023 408754715 408754875 1.190000e-15 95.3
27 TraesCS2D01G585300 chr3D 91.635 263 20 2 3272 3532 255424388 255424650 2.960000e-96 363.0
28 TraesCS2D01G585300 chr3A 90.909 264 22 2 3271 3532 319962307 319962570 1.780000e-93 353.0
29 TraesCS2D01G585300 chr3A 82.400 125 14 7 3891 4013 51014111 51014229 7.120000e-18 102.0
30 TraesCS2D01G585300 chr6D 90.875 263 22 2 3272 3532 434164149 434164411 6.400000e-93 351.0
31 TraesCS2D01G585300 chr6B 91.085 258 21 2 3277 3532 192342520 192342263 8.280000e-92 348.0
32 TraesCS2D01G585300 chr6B 84.173 139 13 6 3882 4014 690446080 690445945 4.220000e-25 126.0
33 TraesCS2D01G585300 chr6B 80.405 148 19 9 3871 4012 610063975 610063832 1.980000e-18 104.0
34 TraesCS2D01G585300 chr1D 89.299 271 25 4 3264 3532 125746472 125746740 1.790000e-88 337.0
35 TraesCS2D01G585300 chr4D 78.626 262 38 15 3739 3994 5591901 5591652 1.500000e-34 158.0
36 TraesCS2D01G585300 chrUn 82.301 113 10 8 3905 4015 214926295 214926399 5.540000e-14 89.8
37 TraesCS2D01G585300 chrUn 82.301 113 10 8 3905 4015 333282175 333282279 5.540000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G585300 chr2D 644372819 644376843 4024 True 7433.00 7433 100.000000 1 4025 1 chr2D.!!$R1 4024
1 TraesCS2D01G585300 chr2D 97648900 97650092 1192 True 688.50 917 87.646500 809 1626 2 chr2D.!!$R2 817
2 TraesCS2D01G585300 chr2D 453724215 453726389 2174 False 621.25 832 87.570000 797 2710 4 chr2D.!!$F3 1913
3 TraesCS2D01G585300 chr2B 791470691 791476620 5929 False 2497.00 4366 94.856000 718 4025 2 chr2B.!!$F1 3307
4 TraesCS2D01G585300 chr2A 769499421 769502972 3551 True 1564.00 3888 90.763667 12 4025 3 chr2A.!!$R1 4013
5 TraesCS2D01G585300 chr6A 612104799 612106015 1216 True 937.00 937 81.515000 809 2069 1 chr6A.!!$R1 1260
6 TraesCS2D01G585300 chr1A 103314169 103314923 754 True 920.00 920 88.860000 797 1553 1 chr1A.!!$R1 756
7 TraesCS2D01G585300 chr1B 491700034 491700759 725 False 872.00 872 88.477000 1193 1914 1 chr1B.!!$F1 721
8 TraesCS2D01G585300 chr3B 434227446 434228194 748 True 848.00 848 87.322000 797 1553 1 chr3B.!!$R1 756
9 TraesCS2D01G585300 chr5B 45142915 45143663 748 True 843.00 843 87.176000 797 1553 1 chr5B.!!$R1 756
10 TraesCS2D01G585300 chr7B 667433864 667434562 698 True 806.00 806 87.607000 1220 1914 1 chr7B.!!$R1 694
11 TraesCS2D01G585300 chr5A 419362204 419362911 707 False 761.00 761 86.145000 1193 1914 1 chr5A.!!$F1 721
12 TraesCS2D01G585300 chr7A 709576264 709576932 668 False 760.00 760 87.573000 797 1459 1 chr7A.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 295 0.033503 TAGAGACCCACATGAGCCGA 60.034 55.0 0.0 0.0 0.00 5.54 F
291 297 0.036388 GAGACCCACATGAGCCGAAA 60.036 55.0 0.0 0.0 0.00 3.46 F
644 651 0.107312 GGGAGTGTGCTCATCATGCT 60.107 55.0 0.0 0.0 43.37 3.79 F
1139 1217 0.748005 GCGGGCATCAACTACCACAT 60.748 55.0 0.0 0.0 0.00 3.21 F
2328 2495 0.247460 TCACCTTCCTGCTGTCATCG 59.753 55.0 0.0 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1130 1208 1.183549 GGAGACGGTGATGTGGTAGT 58.816 55.000 0.00 0.00 0.00 2.73 R
2259 2426 1.289066 CACCTTGTCTTCGGCGAGA 59.711 57.895 10.46 7.33 0.00 4.04 R
2322 2489 2.278013 GCCTCCGTCGTCGATGAC 60.278 66.667 24.88 24.88 39.71 3.06 R
2715 2890 0.244994 GCCACTTGAAGAGCGAGAGA 59.755 55.000 0.00 0.00 0.00 3.10 R
3326 3522 0.605589 GAAGGTTGGACGAAGGGTGG 60.606 60.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.491383 TCTCTGTTAATGTAGGTACCTCAGT 58.509 40.000 20.32 17.10 0.00 3.41
128 130 9.301153 GTGTAGTTTGTTGATTCAAAATCACTT 57.699 29.630 0.00 0.00 38.71 3.16
129 131 9.868277 TGTAGTTTGTTGATTCAAAATCACTTT 57.132 25.926 0.00 0.00 38.71 2.66
172 174 5.741011 AGAAAGTCATAAAATCGCTACCCA 58.259 37.500 0.00 0.00 0.00 4.51
173 175 6.177610 AGAAAGTCATAAAATCGCTACCCAA 58.822 36.000 0.00 0.00 0.00 4.12
188 194 1.997040 ACCCAATAGGCCACCAGTTAA 59.003 47.619 5.01 0.00 40.58 2.01
225 231 4.696455 CACAAAAGAGAACCATGGCTTTT 58.304 39.130 13.04 15.80 40.16 2.27
247 253 9.985318 CTTTTGTTTGTTTGAATGCTCAATAAA 57.015 25.926 0.00 0.00 41.22 1.40
267 273 1.075374 ACCCATAAGGCAGCTGTTTGA 59.925 47.619 16.64 0.00 40.58 2.69
270 276 3.196254 CCCATAAGGCAGCTGTTTGAAAT 59.804 43.478 16.64 0.00 0.00 2.17
276 282 4.006319 AGGCAGCTGTTTGAAATAGAGAC 58.994 43.478 16.64 0.00 0.00 3.36
279 285 4.326826 CAGCTGTTTGAAATAGAGACCCA 58.673 43.478 5.25 0.00 0.00 4.51
281 287 4.072131 GCTGTTTGAAATAGAGACCCACA 58.928 43.478 5.83 0.00 0.00 4.17
282 288 4.702131 GCTGTTTGAAATAGAGACCCACAT 59.298 41.667 5.83 0.00 0.00 3.21
283 289 5.392380 GCTGTTTGAAATAGAGACCCACATG 60.392 44.000 5.83 0.00 0.00 3.21
284 290 5.875224 TGTTTGAAATAGAGACCCACATGA 58.125 37.500 0.00 0.00 0.00 3.07
288 294 1.043816 ATAGAGACCCACATGAGCCG 58.956 55.000 0.00 0.00 0.00 5.52
289 295 0.033503 TAGAGACCCACATGAGCCGA 60.034 55.000 0.00 0.00 0.00 5.54
290 296 0.904865 AGAGACCCACATGAGCCGAA 60.905 55.000 0.00 0.00 0.00 4.30
291 297 0.036388 GAGACCCACATGAGCCGAAA 60.036 55.000 0.00 0.00 0.00 3.46
294 300 0.110486 ACCCACATGAGCCGAAAAGT 59.890 50.000 0.00 0.00 0.00 2.66
296 302 0.523072 CCACATGAGCCGAAAAGTGG 59.477 55.000 0.00 0.00 40.32 4.00
297 303 1.522668 CACATGAGCCGAAAAGTGGA 58.477 50.000 0.00 0.00 0.00 4.02
298 304 2.086869 CACATGAGCCGAAAAGTGGAT 58.913 47.619 0.00 0.00 0.00 3.41
299 305 3.270027 CACATGAGCCGAAAAGTGGATA 58.730 45.455 0.00 0.00 0.00 2.59
300 306 3.879295 CACATGAGCCGAAAAGTGGATAT 59.121 43.478 0.00 0.00 0.00 1.63
301 307 5.056480 CACATGAGCCGAAAAGTGGATATA 58.944 41.667 0.00 0.00 0.00 0.86
302 308 5.702670 CACATGAGCCGAAAAGTGGATATAT 59.297 40.000 0.00 0.00 0.00 0.86
303 309 6.873605 CACATGAGCCGAAAAGTGGATATATA 59.126 38.462 0.00 0.00 0.00 0.86
304 310 6.874134 ACATGAGCCGAAAAGTGGATATATAC 59.126 38.462 0.00 0.00 0.00 1.47
305 311 6.665992 TGAGCCGAAAAGTGGATATATACT 57.334 37.500 0.00 0.00 0.00 2.12
306 312 7.770366 TGAGCCGAAAAGTGGATATATACTA 57.230 36.000 0.00 0.00 0.00 1.82
308 314 7.231925 TGAGCCGAAAAGTGGATATATACTACA 59.768 37.037 0.00 0.00 0.00 2.74
309 315 7.959175 AGCCGAAAAGTGGATATATACTACAA 58.041 34.615 0.00 0.00 0.00 2.41
310 316 8.088981 AGCCGAAAAGTGGATATATACTACAAG 58.911 37.037 0.00 0.00 0.00 3.16
311 317 7.148623 GCCGAAAAGTGGATATATACTACAAGC 60.149 40.741 0.00 0.00 0.00 4.01
313 319 9.256477 CGAAAAGTGGATATATACTACAAGCAA 57.744 33.333 0.00 0.00 0.00 3.91
316 322 7.246171 AGTGGATATATACTACAAGCAAGGG 57.754 40.000 0.00 0.00 0.00 3.95
318 324 7.179338 AGTGGATATATACTACAAGCAAGGGAG 59.821 40.741 0.00 0.00 0.00 4.30
319 325 7.016914 TGGATATATACTACAAGCAAGGGAGT 58.983 38.462 0.00 0.00 0.00 3.85
320 326 7.039011 TGGATATATACTACAAGCAAGGGAGTG 60.039 40.741 0.00 0.00 0.00 3.51
328 334 3.254629 GCAAGGGAGTGCATCAGAA 57.745 52.632 0.00 0.00 44.29 3.02
334 340 1.606531 GAGTGCATCAGAAGGCCCT 59.393 57.895 0.00 0.00 0.00 5.19
336 342 1.751927 GTGCATCAGAAGGCCCTGG 60.752 63.158 0.00 0.00 34.99 4.45
338 344 2.679092 CATCAGAAGGCCCTGGCA 59.321 61.111 10.86 0.00 44.11 4.92
339 345 1.229359 CATCAGAAGGCCCTGGCAT 59.771 57.895 10.86 0.00 44.11 4.40
341 347 2.294170 ATCAGAAGGCCCTGGCATGG 62.294 60.000 10.86 4.21 44.11 3.66
342 348 2.943265 AGAAGGCCCTGGCATGGT 60.943 61.111 10.86 0.00 44.11 3.55
343 349 2.037847 GAAGGCCCTGGCATGGTT 59.962 61.111 10.86 0.00 44.11 3.67
345 351 3.164610 AAGGCCCTGGCATGGTTGT 62.165 57.895 10.86 0.00 44.11 3.32
349 355 3.443045 CCTGGCATGGTTGTCGCC 61.443 66.667 0.00 0.00 46.43 5.54
366 372 1.515521 GCCTCTGTTTGGTGGGTTCG 61.516 60.000 0.00 0.00 0.00 3.95
368 374 0.179029 CTCTGTTTGGTGGGTTCGGT 60.179 55.000 0.00 0.00 0.00 4.69
369 375 0.179040 TCTGTTTGGTGGGTTCGGTC 60.179 55.000 0.00 0.00 0.00 4.79
372 378 1.096967 GTTTGGTGGGTTCGGTCGTT 61.097 55.000 0.00 0.00 0.00 3.85
389 395 0.600782 GTTGCCGTTAGTCGAACCCA 60.601 55.000 0.00 0.00 42.86 4.51
408 414 2.285220 CCATCAAATGTAGGCGTTCTCG 59.715 50.000 0.00 0.00 40.37 4.04
409 415 2.736144 TCAAATGTAGGCGTTCTCGT 57.264 45.000 0.00 0.00 39.49 4.18
423 430 3.124466 CGTTCTCGTGGCAATTCACATTA 59.876 43.478 0.00 0.00 37.50 1.90
446 453 9.822185 ATTATTGTGATGCTTCTAAAAATTCCC 57.178 29.630 0.88 0.00 0.00 3.97
447 454 5.309323 TGTGATGCTTCTAAAAATTCCCG 57.691 39.130 0.88 0.00 0.00 5.14
448 455 4.105486 GTGATGCTTCTAAAAATTCCCGC 58.895 43.478 0.88 0.00 0.00 6.13
457 464 1.815817 AAAATTCCCGCGGCAAAGCT 61.816 50.000 22.85 4.90 34.40 3.74
464 471 1.284408 CGCGGCAAAGCTGGTTTAA 59.716 52.632 4.32 0.00 35.15 1.52
465 472 0.109319 CGCGGCAAAGCTGGTTTAAT 60.109 50.000 4.32 0.00 35.15 1.40
474 481 5.232463 CAAAGCTGGTTTAATGTTGATGCT 58.768 37.500 4.32 0.00 0.00 3.79
481 488 4.142381 GGTTTAATGTTGATGCTGTCTCCC 60.142 45.833 0.00 0.00 0.00 4.30
482 489 2.134789 AATGTTGATGCTGTCTCCCC 57.865 50.000 0.00 0.00 0.00 4.81
493 500 2.116238 CTGTCTCCCCGGGAATTTCTA 58.884 52.381 26.32 0.39 0.00 2.10
494 501 2.504175 CTGTCTCCCCGGGAATTTCTAA 59.496 50.000 26.32 0.00 0.00 2.10
495 502 2.237893 TGTCTCCCCGGGAATTTCTAAC 59.762 50.000 26.32 8.80 0.00 2.34
496 503 2.237893 GTCTCCCCGGGAATTTCTAACA 59.762 50.000 26.32 0.00 0.00 2.41
497 504 2.237893 TCTCCCCGGGAATTTCTAACAC 59.762 50.000 26.32 0.00 0.00 3.32
498 505 1.986631 TCCCCGGGAATTTCTAACACA 59.013 47.619 26.32 0.00 0.00 3.72
501 508 3.130340 CCCCGGGAATTTCTAACACATTG 59.870 47.826 26.32 0.00 0.00 2.82
502 509 4.013728 CCCGGGAATTTCTAACACATTGA 58.986 43.478 18.48 0.00 0.00 2.57
504 511 5.399013 CCGGGAATTTCTAACACATTGAAC 58.601 41.667 0.00 0.00 0.00 3.18
505 512 5.086058 CGGGAATTTCTAACACATTGAACG 58.914 41.667 0.00 0.00 0.00 3.95
507 514 4.857037 GGAATTTCTAACACATTGAACGGC 59.143 41.667 0.00 0.00 0.00 5.68
508 515 5.446143 AATTTCTAACACATTGAACGGCA 57.554 34.783 0.00 0.00 0.00 5.69
510 517 5.446143 TTTCTAACACATTGAACGGCATT 57.554 34.783 0.00 0.00 0.00 3.56
511 518 6.561737 TTTCTAACACATTGAACGGCATTA 57.438 33.333 0.00 0.00 0.00 1.90
512 519 5.794687 TCTAACACATTGAACGGCATTAG 57.205 39.130 0.00 0.00 0.00 1.73
513 520 5.483811 TCTAACACATTGAACGGCATTAGA 58.516 37.500 0.00 0.00 0.00 2.10
515 522 4.882671 ACACATTGAACGGCATTAGATC 57.117 40.909 0.00 0.00 0.00 2.75
516 523 4.260985 ACACATTGAACGGCATTAGATCA 58.739 39.130 0.00 0.00 0.00 2.92
519 526 4.333649 ACATTGAACGGCATTAGATCACAG 59.666 41.667 0.00 0.00 0.00 3.66
522 529 4.371786 TGAACGGCATTAGATCACAGATC 58.628 43.478 0.00 0.00 0.00 2.75
524 531 3.987547 ACGGCATTAGATCACAGATCTG 58.012 45.455 21.37 21.37 0.00 2.90
525 532 3.638627 ACGGCATTAGATCACAGATCTGA 59.361 43.478 29.27 8.51 0.00 3.27
526 533 4.282957 ACGGCATTAGATCACAGATCTGAT 59.717 41.667 29.27 13.34 33.32 2.90
527 534 4.863689 CGGCATTAGATCACAGATCTGATC 59.136 45.833 29.27 20.77 44.87 2.92
528 535 5.566230 CGGCATTAGATCACAGATCTGATCA 60.566 44.000 29.27 12.07 46.32 2.92
529 536 5.638657 GGCATTAGATCACAGATCTGATCAC 59.361 44.000 29.27 16.00 46.32 3.06
530 537 6.457355 GCATTAGATCACAGATCTGATCACT 58.543 40.000 29.27 21.19 46.32 3.41
532 539 7.441760 GCATTAGATCACAGATCTGATCACTTT 59.558 37.037 29.27 9.16 46.32 2.66
533 540 8.766151 CATTAGATCACAGATCTGATCACTTTG 58.234 37.037 29.27 14.52 46.32 2.77
535 542 6.575267 AGATCACAGATCTGATCACTTTGAG 58.425 40.000 29.27 7.81 46.32 3.02
537 544 4.222366 TCACAGATCTGATCACTTTGAGCT 59.778 41.667 29.27 0.00 33.24 4.09
538 545 4.936411 CACAGATCTGATCACTTTGAGCTT 59.064 41.667 29.27 0.00 33.24 3.74
540 547 6.002704 ACAGATCTGATCACTTTGAGCTTTT 58.997 36.000 29.27 0.00 33.24 2.27
541 548 6.489361 ACAGATCTGATCACTTTGAGCTTTTT 59.511 34.615 29.27 0.00 33.24 1.94
559 566 2.032680 TTTCCTTACCCGTGCATAGC 57.967 50.000 0.00 0.00 0.00 2.97
560 567 1.200519 TTCCTTACCCGTGCATAGCT 58.799 50.000 0.00 0.00 0.00 3.32
561 568 1.200519 TCCTTACCCGTGCATAGCTT 58.799 50.000 0.00 0.00 0.00 3.74
562 569 1.557832 TCCTTACCCGTGCATAGCTTT 59.442 47.619 0.00 0.00 0.00 3.51
563 570 1.670811 CCTTACCCGTGCATAGCTTTG 59.329 52.381 0.00 0.00 0.00 2.77
564 571 1.670811 CTTACCCGTGCATAGCTTTGG 59.329 52.381 6.29 0.00 0.00 3.28
565 572 0.616371 TACCCGTGCATAGCTTTGGT 59.384 50.000 6.29 0.00 0.00 3.67
566 573 0.251165 ACCCGTGCATAGCTTTGGTT 60.251 50.000 6.29 0.00 0.00 3.67
567 574 0.887933 CCCGTGCATAGCTTTGGTTT 59.112 50.000 6.29 0.00 0.00 3.27
568 575 1.272212 CCCGTGCATAGCTTTGGTTTT 59.728 47.619 6.29 0.00 0.00 2.43
569 576 2.490115 CCCGTGCATAGCTTTGGTTTTA 59.510 45.455 6.29 0.00 0.00 1.52
570 577 3.130340 CCCGTGCATAGCTTTGGTTTTAT 59.870 43.478 6.29 0.00 0.00 1.40
571 578 4.336993 CCCGTGCATAGCTTTGGTTTTATA 59.663 41.667 6.29 0.00 0.00 0.98
572 579 5.009610 CCCGTGCATAGCTTTGGTTTTATAT 59.990 40.000 6.29 0.00 0.00 0.86
573 580 6.460953 CCCGTGCATAGCTTTGGTTTTATATT 60.461 38.462 6.29 0.00 0.00 1.28
574 581 6.417635 CCGTGCATAGCTTTGGTTTTATATTG 59.582 38.462 6.29 0.00 0.00 1.90
575 582 6.074888 CGTGCATAGCTTTGGTTTTATATTGC 60.075 38.462 6.29 0.00 0.00 3.56
576 583 6.980397 GTGCATAGCTTTGGTTTTATATTGCT 59.020 34.615 6.29 0.00 0.00 3.91
577 584 8.134895 GTGCATAGCTTTGGTTTTATATTGCTA 58.865 33.333 6.29 0.00 36.44 3.49
578 585 8.352201 TGCATAGCTTTGGTTTTATATTGCTAG 58.648 33.333 6.29 0.00 35.65 3.42
579 586 8.352942 GCATAGCTTTGGTTTTATATTGCTAGT 58.647 33.333 6.29 0.00 35.65 2.57
582 589 8.122472 AGCTTTGGTTTTATATTGCTAGTTGT 57.878 30.769 0.00 0.00 0.00 3.32
583 590 8.244113 AGCTTTGGTTTTATATTGCTAGTTGTC 58.756 33.333 0.00 0.00 0.00 3.18
584 591 7.218204 GCTTTGGTTTTATATTGCTAGTTGTCG 59.782 37.037 0.00 0.00 0.00 4.35
585 592 6.671614 TGGTTTTATATTGCTAGTTGTCGG 57.328 37.500 0.00 0.00 0.00 4.79
586 593 6.174760 TGGTTTTATATTGCTAGTTGTCGGT 58.825 36.000 0.00 0.00 0.00 4.69
587 594 6.655848 TGGTTTTATATTGCTAGTTGTCGGTT 59.344 34.615 0.00 0.00 0.00 4.44
588 595 7.175293 TGGTTTTATATTGCTAGTTGTCGGTTT 59.825 33.333 0.00 0.00 0.00 3.27
589 596 7.483691 GGTTTTATATTGCTAGTTGTCGGTTTG 59.516 37.037 0.00 0.00 0.00 2.93
590 597 7.675962 TTTATATTGCTAGTTGTCGGTTTGT 57.324 32.000 0.00 0.00 0.00 2.83
591 598 7.675962 TTATATTGCTAGTTGTCGGTTTGTT 57.324 32.000 0.00 0.00 0.00 2.83
592 599 4.911514 ATTGCTAGTTGTCGGTTTGTTT 57.088 36.364 0.00 0.00 0.00 2.83
593 600 4.705337 TTGCTAGTTGTCGGTTTGTTTT 57.295 36.364 0.00 0.00 0.00 2.43
594 601 4.281525 TGCTAGTTGTCGGTTTGTTTTC 57.718 40.909 0.00 0.00 0.00 2.29
595 602 3.242478 TGCTAGTTGTCGGTTTGTTTTCG 60.242 43.478 0.00 0.00 0.00 3.46
596 603 2.182904 AGTTGTCGGTTTGTTTTCGC 57.817 45.000 0.00 0.00 0.00 4.70
597 604 1.469308 AGTTGTCGGTTTGTTTTCGCA 59.531 42.857 0.00 0.00 0.00 5.10
598 605 2.098443 AGTTGTCGGTTTGTTTTCGCAT 59.902 40.909 0.00 0.00 0.00 4.73
599 606 2.112475 TGTCGGTTTGTTTTCGCATG 57.888 45.000 0.00 0.00 0.00 4.06
600 607 1.402259 TGTCGGTTTGTTTTCGCATGT 59.598 42.857 0.00 0.00 0.00 3.21
601 608 1.778591 GTCGGTTTGTTTTCGCATGTG 59.221 47.619 0.00 0.00 0.00 3.21
602 609 1.402259 TCGGTTTGTTTTCGCATGTGT 59.598 42.857 6.09 0.00 0.00 3.72
603 610 1.516453 CGGTTTGTTTTCGCATGTGTG 59.484 47.619 6.09 0.00 0.00 3.82
624 631 2.726760 GCATCCTAGTTATGCGAAGACG 59.273 50.000 10.52 0.00 40.27 4.18
625 632 3.309388 CATCCTAGTTATGCGAAGACGG 58.691 50.000 0.00 0.00 40.15 4.79
626 633 1.679680 TCCTAGTTATGCGAAGACGGG 59.320 52.381 0.00 0.00 40.15 5.28
627 634 1.269621 CCTAGTTATGCGAAGACGGGG 60.270 57.143 0.00 0.00 40.15 5.73
628 635 1.679680 CTAGTTATGCGAAGACGGGGA 59.320 52.381 0.00 0.00 40.15 4.81
629 636 0.460311 AGTTATGCGAAGACGGGGAG 59.540 55.000 0.00 0.00 40.15 4.30
630 637 0.175073 GTTATGCGAAGACGGGGAGT 59.825 55.000 0.00 0.00 40.15 3.85
631 638 0.174845 TTATGCGAAGACGGGGAGTG 59.825 55.000 0.00 0.00 40.15 3.51
632 639 0.968901 TATGCGAAGACGGGGAGTGT 60.969 55.000 0.00 0.00 40.15 3.55
633 640 2.432628 GCGAAGACGGGGAGTGTG 60.433 66.667 0.00 0.00 40.15 3.82
634 641 2.432628 CGAAGACGGGGAGTGTGC 60.433 66.667 0.00 0.00 35.72 4.57
635 642 2.932234 CGAAGACGGGGAGTGTGCT 61.932 63.158 0.00 0.00 35.72 4.40
636 643 1.079750 GAAGACGGGGAGTGTGCTC 60.080 63.158 0.00 0.00 40.93 4.26
637 644 1.816863 GAAGACGGGGAGTGTGCTCA 61.817 60.000 0.00 0.00 43.37 4.26
638 645 1.194781 AAGACGGGGAGTGTGCTCAT 61.195 55.000 0.00 0.00 43.37 2.90
639 646 1.153549 GACGGGGAGTGTGCTCATC 60.154 63.158 0.00 0.00 43.37 2.92
640 647 1.888436 GACGGGGAGTGTGCTCATCA 61.888 60.000 0.00 0.00 43.37 3.07
641 648 1.267574 ACGGGGAGTGTGCTCATCAT 61.268 55.000 0.00 0.00 43.37 2.45
642 649 0.812811 CGGGGAGTGTGCTCATCATG 60.813 60.000 0.00 0.00 43.37 3.07
643 650 1.099879 GGGGAGTGTGCTCATCATGC 61.100 60.000 0.00 0.00 43.37 4.06
644 651 0.107312 GGGAGTGTGCTCATCATGCT 60.107 55.000 0.00 0.00 43.37 3.79
645 652 1.139654 GGGAGTGTGCTCATCATGCTA 59.860 52.381 0.00 0.00 43.37 3.49
646 653 2.224475 GGGAGTGTGCTCATCATGCTAT 60.224 50.000 0.00 0.00 43.37 2.97
647 654 2.806818 GGAGTGTGCTCATCATGCTATG 59.193 50.000 0.00 0.00 43.37 2.23
648 655 3.464907 GAGTGTGCTCATCATGCTATGT 58.535 45.455 0.00 0.00 41.29 2.29
649 656 4.502087 GGAGTGTGCTCATCATGCTATGTA 60.502 45.833 0.00 0.00 43.37 2.29
650 657 5.224821 AGTGTGCTCATCATGCTATGTAT 57.775 39.130 0.00 0.00 0.00 2.29
651 658 5.618236 AGTGTGCTCATCATGCTATGTATT 58.382 37.500 0.00 0.00 0.00 1.89
652 659 6.060136 AGTGTGCTCATCATGCTATGTATTT 58.940 36.000 0.00 0.00 0.00 1.40
653 660 6.544931 AGTGTGCTCATCATGCTATGTATTTT 59.455 34.615 0.00 0.00 0.00 1.82
654 661 6.854892 GTGTGCTCATCATGCTATGTATTTTC 59.145 38.462 0.00 0.00 0.00 2.29
655 662 6.769341 TGTGCTCATCATGCTATGTATTTTCT 59.231 34.615 0.00 0.00 0.00 2.52
656 663 7.283807 TGTGCTCATCATGCTATGTATTTTCTT 59.716 33.333 0.00 0.00 0.00 2.52
657 664 7.590322 GTGCTCATCATGCTATGTATTTTCTTG 59.410 37.037 0.00 0.00 0.00 3.02
658 665 7.499895 TGCTCATCATGCTATGTATTTTCTTGA 59.500 33.333 0.00 0.00 0.00 3.02
659 666 8.512956 GCTCATCATGCTATGTATTTTCTTGAT 58.487 33.333 0.00 0.00 0.00 2.57
660 667 9.827411 CTCATCATGCTATGTATTTTCTTGATG 57.173 33.333 0.00 0.00 39.05 3.07
661 668 8.294577 TCATCATGCTATGTATTTTCTTGATGC 58.705 33.333 0.00 0.00 38.30 3.91
662 669 7.812690 TCATGCTATGTATTTTCTTGATGCT 57.187 32.000 0.00 0.00 0.00 3.79
663 670 7.868775 TCATGCTATGTATTTTCTTGATGCTC 58.131 34.615 0.00 0.00 0.00 4.26
664 671 6.291067 TGCTATGTATTTTCTTGATGCTCG 57.709 37.500 0.00 0.00 0.00 5.03
665 672 6.048509 TGCTATGTATTTTCTTGATGCTCGA 58.951 36.000 0.00 0.00 0.00 4.04
666 673 6.707608 TGCTATGTATTTTCTTGATGCTCGAT 59.292 34.615 0.00 0.00 0.00 3.59
667 674 7.227314 TGCTATGTATTTTCTTGATGCTCGATT 59.773 33.333 0.00 0.00 0.00 3.34
668 675 7.743838 GCTATGTATTTTCTTGATGCTCGATTC 59.256 37.037 0.00 0.00 0.00 2.52
669 676 7.798596 ATGTATTTTCTTGATGCTCGATTCT 57.201 32.000 0.00 0.00 0.00 2.40
670 677 7.008440 TGTATTTTCTTGATGCTCGATTCTG 57.992 36.000 0.00 0.00 0.00 3.02
671 678 6.818142 TGTATTTTCTTGATGCTCGATTCTGA 59.182 34.615 0.00 0.00 0.00 3.27
672 679 5.791367 TTTTCTTGATGCTCGATTCTGAG 57.209 39.130 0.00 2.44 39.05 3.35
682 689 4.802876 CTCGATTCTGAGCCAATAAACC 57.197 45.455 0.00 0.00 0.00 3.27
683 690 4.446371 CTCGATTCTGAGCCAATAAACCT 58.554 43.478 0.00 0.00 0.00 3.50
684 691 4.442706 TCGATTCTGAGCCAATAAACCTC 58.557 43.478 0.00 0.00 0.00 3.85
685 692 4.081142 TCGATTCTGAGCCAATAAACCTCA 60.081 41.667 0.00 0.00 34.68 3.86
686 693 4.034510 CGATTCTGAGCCAATAAACCTCAC 59.965 45.833 0.00 0.00 32.61 3.51
687 694 3.350219 TCTGAGCCAATAAACCTCACC 57.650 47.619 0.00 0.00 32.61 4.02
688 695 2.026262 TCTGAGCCAATAAACCTCACCC 60.026 50.000 0.00 0.00 32.61 4.61
689 696 1.992557 TGAGCCAATAAACCTCACCCT 59.007 47.619 0.00 0.00 31.16 4.34
690 697 2.378547 TGAGCCAATAAACCTCACCCTT 59.621 45.455 0.00 0.00 31.16 3.95
691 698 3.181423 TGAGCCAATAAACCTCACCCTTT 60.181 43.478 0.00 0.00 31.16 3.11
692 699 3.165071 AGCCAATAAACCTCACCCTTTG 58.835 45.455 0.00 0.00 0.00 2.77
693 700 2.897326 GCCAATAAACCTCACCCTTTGT 59.103 45.455 0.00 0.00 0.00 2.83
694 701 3.056821 GCCAATAAACCTCACCCTTTGTC 60.057 47.826 0.00 0.00 0.00 3.18
695 702 3.190535 CCAATAAACCTCACCCTTTGTCG 59.809 47.826 0.00 0.00 0.00 4.35
696 703 4.069304 CAATAAACCTCACCCTTTGTCGA 58.931 43.478 0.00 0.00 0.00 4.20
697 704 2.721425 AAACCTCACCCTTTGTCGAA 57.279 45.000 0.00 0.00 0.00 3.71
698 705 2.721425 AACCTCACCCTTTGTCGAAA 57.279 45.000 0.00 0.00 0.00 3.46
701 708 3.562182 ACCTCACCCTTTGTCGAAAAAT 58.438 40.909 0.15 0.00 0.00 1.82
704 711 4.517453 CCTCACCCTTTGTCGAAAAATACA 59.483 41.667 0.15 0.00 0.00 2.29
709 716 6.582295 CACCCTTTGTCGAAAAATACATTGAG 59.418 38.462 0.15 0.00 0.00 3.02
710 717 6.092748 CCCTTTGTCGAAAAATACATTGAGG 58.907 40.000 0.15 0.00 0.00 3.86
713 720 3.442273 TGTCGAAAAATACATTGAGGGGC 59.558 43.478 0.00 0.00 0.00 5.80
722 729 3.094484 ACATTGAGGGGCGGATAAAAA 57.906 42.857 0.00 0.00 0.00 1.94
757 764 9.004231 AGGGTATACACTCTCATTAGGAAAAAT 57.996 33.333 0.40 0.00 23.90 1.82
778 785 9.533831 AAAAATAAACCTGGAGAATACAGTGAT 57.466 29.630 0.00 0.00 34.16 3.06
896 908 0.839277 CTCACACTCCCATGGCCATA 59.161 55.000 20.30 1.39 0.00 2.74
1135 1213 2.895372 CCGCGGGCATCAACTACC 60.895 66.667 20.10 0.00 0.00 3.18
1136 1214 2.125310 CGCGGGCATCAACTACCA 60.125 61.111 0.00 0.00 0.00 3.25
1137 1215 2.461110 CGCGGGCATCAACTACCAC 61.461 63.158 0.00 0.00 0.00 4.16
1138 1216 1.376683 GCGGGCATCAACTACCACA 60.377 57.895 0.00 0.00 0.00 4.17
1139 1217 0.748005 GCGGGCATCAACTACCACAT 60.748 55.000 0.00 0.00 0.00 3.21
1140 1218 1.299541 CGGGCATCAACTACCACATC 58.700 55.000 0.00 0.00 0.00 3.06
1141 1219 1.406751 CGGGCATCAACTACCACATCA 60.407 52.381 0.00 0.00 0.00 3.07
1556 1698 3.578456 GGACGAGTACGACCCGAA 58.422 61.111 0.00 0.00 45.39 4.30
1891 2040 4.700365 CCGTCGACGAGCTGCACA 62.700 66.667 37.65 0.00 43.02 4.57
1959 2108 3.984241 GAGTTCGCCATCGACTCG 58.016 61.111 0.00 0.00 45.43 4.18
2259 2426 1.883275 CTCGGCTCCATCTTCTACGAT 59.117 52.381 0.00 0.00 0.00 3.73
2322 2489 0.906756 TCCTCCTCACCTTCCTGCTG 60.907 60.000 0.00 0.00 0.00 4.41
2325 2492 0.471780 TCCTCACCTTCCTGCTGTCA 60.472 55.000 0.00 0.00 0.00 3.58
2328 2495 0.247460 TCACCTTCCTGCTGTCATCG 59.753 55.000 0.00 0.00 0.00 3.84
2445 2620 4.284550 GCCCTGGTGTTCCTGCCA 62.285 66.667 0.00 0.00 34.23 4.92
2457 2632 1.304713 CCTGCCATTCCAGCTGGTT 60.305 57.895 31.58 17.98 42.58 3.67
2899 3074 3.346631 TTCGTCGCCTTCTACCGGC 62.347 63.158 0.00 0.00 44.11 6.13
3025 3203 2.421424 GCATCTACCACCAAAGCTTGAG 59.579 50.000 0.00 0.00 0.00 3.02
3049 3229 4.883585 TCCATTCCTTGCATGTGTTCTATC 59.116 41.667 0.00 0.00 0.00 2.08
3117 3297 9.609346 TGAGTAAAGGGACTAATTACATTTAGC 57.391 33.333 0.00 0.00 38.49 3.09
3118 3298 9.609346 GAGTAAAGGGACTAATTACATTTAGCA 57.391 33.333 0.00 0.00 38.49 3.49
3232 3423 6.283694 TGTAATCTCTAGCAGCTAATGGTTG 58.716 40.000 3.09 0.00 40.89 3.77
3322 3518 8.923270 TGTAAGATTTCCATTTCACCTTTCTTT 58.077 29.630 0.00 0.00 0.00 2.52
3323 3519 9.411801 GTAAGATTTCCATTTCACCTTTCTTTC 57.588 33.333 0.00 0.00 0.00 2.62
3326 3522 5.529581 TTCCATTTCACCTTTCTTTCCAC 57.470 39.130 0.00 0.00 0.00 4.02
3392 3590 9.292195 CCTTAATTTACTTACCTTCTGAACCAA 57.708 33.333 0.00 0.00 0.00 3.67
3401 3599 7.996644 ACTTACCTTCTGAACCAATTTCACTTA 59.003 33.333 0.00 0.00 39.45 2.24
3458 3656 6.192773 AGACAATCCATGGTCAGAATTTGAT 58.807 36.000 12.58 0.00 38.29 2.57
3461 3659 6.096423 ACAATCCATGGTCAGAATTTGATGAG 59.904 38.462 12.58 0.00 38.29 2.90
3512 3710 5.616270 TGACAGGTTAATCACAAGCTAACA 58.384 37.500 0.00 0.00 34.59 2.41
3518 3716 9.035607 CAGGTTAATCACAAGCTAACATACTAG 57.964 37.037 0.00 0.00 34.59 2.57
3623 3838 1.428448 TGAAATCTGGTGAACGCTCG 58.572 50.000 0.00 0.00 0.00 5.03
3625 3840 0.320771 AAATCTGGTGAACGCTCGCT 60.321 50.000 0.00 0.00 32.33 4.93
3754 6587 2.354203 GCGATCAGGGAACTCAAACTCT 60.354 50.000 0.00 0.00 40.21 3.24
3822 6655 5.653769 AGCAGGCTTTGTGAATTACATGTAT 59.346 36.000 6.36 0.00 39.48 2.29
3826 6659 7.699391 CAGGCTTTGTGAATTACATGTATTGAG 59.301 37.037 6.36 0.00 39.48 3.02
3936 6770 6.923928 TTTTGAAAGAGCAAAAATTCCCTG 57.076 33.333 0.00 0.00 42.78 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.634671 ACATTAACAGAGAATGATTGCATCA 57.365 32.000 2.54 0.00 44.55 3.07
1 2 8.288208 CCTACATTAACAGAGAATGATTGCATC 58.712 37.037 2.54 0.00 37.65 3.91
2 3 7.776969 ACCTACATTAACAGAGAATGATTGCAT 59.223 33.333 2.54 0.00 37.65 3.96
3 4 7.112122 ACCTACATTAACAGAGAATGATTGCA 58.888 34.615 2.54 0.00 37.65 4.08
4 5 7.559590 ACCTACATTAACAGAGAATGATTGC 57.440 36.000 2.54 0.00 37.65 3.56
6 7 8.993424 AGGTACCTACATTAACAGAGAATGATT 58.007 33.333 14.41 0.00 37.65 2.57
9 10 7.782049 TGAGGTACCTACATTAACAGAGAATG 58.218 38.462 16.29 0.00 39.68 2.67
10 11 7.620094 ACTGAGGTACCTACATTAACAGAGAAT 59.380 37.037 24.02 5.80 0.00 2.40
36 37 6.481644 GGATTTTTGTGTTCATTGCACCTAAA 59.518 34.615 0.00 0.00 36.11 1.85
172 174 2.241430 GGAGGTTAACTGGTGGCCTATT 59.759 50.000 3.32 0.00 0.00 1.73
173 175 1.844497 GGAGGTTAACTGGTGGCCTAT 59.156 52.381 3.32 0.00 0.00 2.57
188 194 0.608856 TTGTGCGCAATGATGGAGGT 60.609 50.000 14.00 0.00 0.00 3.85
225 231 6.481644 GGGTTTATTGAGCATTCAAACAAACA 59.518 34.615 19.58 0.00 45.82 2.83
247 253 1.075374 TCAAACAGCTGCCTTATGGGT 59.925 47.619 15.27 0.00 37.43 4.51
267 273 2.158900 CGGCTCATGTGGGTCTCTATTT 60.159 50.000 0.00 0.00 0.00 1.40
270 276 0.033503 TCGGCTCATGTGGGTCTCTA 60.034 55.000 0.00 0.00 0.00 2.43
276 282 0.523072 CACTTTTCGGCTCATGTGGG 59.477 55.000 0.00 0.00 0.00 4.61
279 285 2.496899 ATCCACTTTTCGGCTCATGT 57.503 45.000 0.00 0.00 0.00 3.21
281 287 7.246171 AGTATATATCCACTTTTCGGCTCAT 57.754 36.000 0.00 0.00 0.00 2.90
282 288 6.665992 AGTATATATCCACTTTTCGGCTCA 57.334 37.500 0.00 0.00 0.00 4.26
283 289 7.600065 TGTAGTATATATCCACTTTTCGGCTC 58.400 38.462 0.00 0.00 0.00 4.70
284 290 7.534723 TGTAGTATATATCCACTTTTCGGCT 57.465 36.000 0.00 0.00 0.00 5.52
289 295 9.561069 CCTTGCTTGTAGTATATATCCACTTTT 57.439 33.333 0.00 0.00 0.00 2.27
290 296 8.157476 CCCTTGCTTGTAGTATATATCCACTTT 58.843 37.037 0.00 0.00 0.00 2.66
291 297 7.512746 TCCCTTGCTTGTAGTATATATCCACTT 59.487 37.037 0.00 0.00 0.00 3.16
294 300 7.016914 ACTCCCTTGCTTGTAGTATATATCCA 58.983 38.462 0.00 0.00 0.00 3.41
296 302 6.814146 GCACTCCCTTGCTTGTAGTATATATC 59.186 42.308 0.00 0.00 39.59 1.63
297 303 6.270000 TGCACTCCCTTGCTTGTAGTATATAT 59.730 38.462 0.00 0.00 43.41 0.86
298 304 5.600898 TGCACTCCCTTGCTTGTAGTATATA 59.399 40.000 0.00 0.00 43.41 0.86
299 305 4.408921 TGCACTCCCTTGCTTGTAGTATAT 59.591 41.667 0.00 0.00 43.41 0.86
300 306 3.772572 TGCACTCCCTTGCTTGTAGTATA 59.227 43.478 0.00 0.00 43.41 1.47
301 307 2.571653 TGCACTCCCTTGCTTGTAGTAT 59.428 45.455 0.00 0.00 43.41 2.12
302 308 1.974957 TGCACTCCCTTGCTTGTAGTA 59.025 47.619 0.00 0.00 43.41 1.82
303 309 0.764890 TGCACTCCCTTGCTTGTAGT 59.235 50.000 0.00 0.00 43.41 2.73
304 310 2.012673 GATGCACTCCCTTGCTTGTAG 58.987 52.381 0.00 0.00 43.41 2.74
305 311 1.350684 TGATGCACTCCCTTGCTTGTA 59.649 47.619 0.00 0.00 43.41 2.41
306 312 0.111061 TGATGCACTCCCTTGCTTGT 59.889 50.000 0.00 0.00 43.41 3.16
308 314 0.694771 TCTGATGCACTCCCTTGCTT 59.305 50.000 0.00 0.00 43.41 3.91
309 315 0.694771 TTCTGATGCACTCCCTTGCT 59.305 50.000 0.00 0.00 43.41 3.91
310 316 1.093159 CTTCTGATGCACTCCCTTGC 58.907 55.000 0.00 0.00 43.31 4.01
311 317 1.747709 CCTTCTGATGCACTCCCTTG 58.252 55.000 0.00 0.00 0.00 3.61
313 319 1.606531 GCCTTCTGATGCACTCCCT 59.393 57.895 0.00 0.00 0.00 4.20
314 320 1.452833 GGCCTTCTGATGCACTCCC 60.453 63.158 0.00 0.00 0.00 4.30
316 322 0.747283 CAGGGCCTTCTGATGCACTC 60.747 60.000 1.32 0.00 39.80 3.51
318 324 1.751927 CCAGGGCCTTCTGATGCAC 60.752 63.158 1.32 0.00 36.93 4.57
319 325 2.679092 CCAGGGCCTTCTGATGCA 59.321 61.111 1.32 0.00 36.93 3.96
320 326 2.832201 GCCAGGGCCTTCTGATGC 60.832 66.667 1.32 3.05 36.93 3.91
322 328 1.229359 CATGCCAGGGCCTTCTGAT 59.771 57.895 1.32 0.00 41.09 2.90
323 329 2.679092 CATGCCAGGGCCTTCTGA 59.321 61.111 1.32 0.00 41.09 3.27
325 331 2.551413 AACCATGCCAGGGCCTTCT 61.551 57.895 1.32 0.00 41.09 2.85
327 333 2.284112 CAACCATGCCAGGGCCTT 60.284 61.111 1.32 0.00 41.09 4.35
328 334 3.590466 GACAACCATGCCAGGGCCT 62.590 63.158 0.00 0.00 41.09 5.19
336 342 1.237285 AACAGAGGCGACAACCATGC 61.237 55.000 0.00 0.00 0.00 4.06
338 344 1.238439 CAAACAGAGGCGACAACCAT 58.762 50.000 0.00 0.00 0.00 3.55
339 345 0.817634 CCAAACAGAGGCGACAACCA 60.818 55.000 0.00 0.00 0.00 3.67
341 347 0.307760 CACCAAACAGAGGCGACAAC 59.692 55.000 0.00 0.00 0.00 3.32
342 348 0.817634 CCACCAAACAGAGGCGACAA 60.818 55.000 0.00 0.00 0.00 3.18
343 349 1.227823 CCACCAAACAGAGGCGACA 60.228 57.895 0.00 0.00 0.00 4.35
345 351 1.990160 AACCCACCAAACAGAGGCGA 61.990 55.000 0.00 0.00 0.00 5.54
349 355 0.179029 ACCGAACCCACCAAACAGAG 60.179 55.000 0.00 0.00 0.00 3.35
372 378 0.108520 GATGGGTTCGACTAACGGCA 60.109 55.000 0.00 0.00 42.82 5.69
381 387 2.639065 GCCTACATTTGATGGGTTCGA 58.361 47.619 0.00 0.00 33.60 3.71
389 395 2.930040 CACGAGAACGCCTACATTTGAT 59.070 45.455 0.00 0.00 43.96 2.57
423 430 6.332630 CGGGAATTTTTAGAAGCATCACAAT 58.667 36.000 0.00 0.00 0.00 2.71
446 453 0.109319 ATTAAACCAGCTTTGCCGCG 60.109 50.000 0.00 0.00 34.40 6.46
447 454 1.336795 ACATTAAACCAGCTTTGCCGC 60.337 47.619 0.00 0.00 0.00 6.53
448 455 2.723124 ACATTAAACCAGCTTTGCCG 57.277 45.000 0.00 0.00 0.00 5.69
457 464 4.458989 GGAGACAGCATCAACATTAAACCA 59.541 41.667 0.00 0.00 0.00 3.67
460 467 4.016444 GGGGAGACAGCATCAACATTAAA 58.984 43.478 0.00 0.00 0.00 1.52
464 471 0.107508 CGGGGAGACAGCATCAACAT 60.108 55.000 0.00 0.00 0.00 2.71
465 472 1.296392 CGGGGAGACAGCATCAACA 59.704 57.895 0.00 0.00 0.00 3.33
474 481 2.237893 GTTAGAAATTCCCGGGGAGACA 59.762 50.000 23.50 1.47 31.21 3.41
481 488 5.399013 GTTCAATGTGTTAGAAATTCCCGG 58.601 41.667 0.00 0.00 0.00 5.73
482 489 5.086058 CGTTCAATGTGTTAGAAATTCCCG 58.914 41.667 0.00 0.00 0.00 5.14
493 500 4.699735 TGATCTAATGCCGTTCAATGTGTT 59.300 37.500 0.00 0.00 0.00 3.32
494 501 4.094887 GTGATCTAATGCCGTTCAATGTGT 59.905 41.667 0.00 0.00 0.00 3.72
495 502 4.094739 TGTGATCTAATGCCGTTCAATGTG 59.905 41.667 0.00 0.00 0.00 3.21
496 503 4.260985 TGTGATCTAATGCCGTTCAATGT 58.739 39.130 0.00 0.00 0.00 2.71
497 504 4.571984 TCTGTGATCTAATGCCGTTCAATG 59.428 41.667 0.00 0.00 0.00 2.82
498 505 4.769688 TCTGTGATCTAATGCCGTTCAAT 58.230 39.130 0.00 0.00 0.00 2.57
501 508 4.447054 CAGATCTGTGATCTAATGCCGTTC 59.553 45.833 14.95 0.00 0.00 3.95
502 509 4.100035 TCAGATCTGTGATCTAATGCCGTT 59.900 41.667 21.92 0.00 0.00 4.44
504 511 4.248691 TCAGATCTGTGATCTAATGCCG 57.751 45.455 21.92 0.00 0.00 5.69
513 520 5.104859 AGCTCAAAGTGATCAGATCTGTGAT 60.105 40.000 21.92 9.80 40.00 3.06
515 522 4.505808 AGCTCAAAGTGATCAGATCTGTG 58.494 43.478 21.92 11.23 0.00 3.66
516 523 4.822685 AGCTCAAAGTGATCAGATCTGT 57.177 40.909 21.92 9.83 0.00 3.41
538 545 2.750712 GCTATGCACGGGTAAGGAAAAA 59.249 45.455 0.00 0.00 0.00 1.94
540 547 1.557832 AGCTATGCACGGGTAAGGAAA 59.442 47.619 0.00 0.00 0.00 3.13
541 548 1.200519 AGCTATGCACGGGTAAGGAA 58.799 50.000 0.00 0.00 0.00 3.36
542 549 1.200519 AAGCTATGCACGGGTAAGGA 58.799 50.000 0.00 0.00 0.00 3.36
543 550 1.670811 CAAAGCTATGCACGGGTAAGG 59.329 52.381 0.00 0.00 0.00 2.69
544 551 1.670811 CCAAAGCTATGCACGGGTAAG 59.329 52.381 0.00 0.00 0.00 2.34
545 552 1.003812 ACCAAAGCTATGCACGGGTAA 59.996 47.619 0.00 0.00 0.00 2.85
546 553 0.616371 ACCAAAGCTATGCACGGGTA 59.384 50.000 0.00 0.00 0.00 3.69
548 555 0.887933 AAACCAAAGCTATGCACGGG 59.112 50.000 0.00 0.00 0.00 5.28
549 556 2.723124 AAAACCAAAGCTATGCACGG 57.277 45.000 0.00 0.00 0.00 4.94
550 557 6.074888 GCAATATAAAACCAAAGCTATGCACG 60.075 38.462 0.00 0.00 0.00 5.34
551 558 6.980397 AGCAATATAAAACCAAAGCTATGCAC 59.020 34.615 0.00 0.00 0.00 4.57
552 559 7.111247 AGCAATATAAAACCAAAGCTATGCA 57.889 32.000 0.00 0.00 0.00 3.96
553 560 8.352942 ACTAGCAATATAAAACCAAAGCTATGC 58.647 33.333 0.00 0.00 33.45 3.14
556 563 9.238368 ACAACTAGCAATATAAAACCAAAGCTA 57.762 29.630 0.00 0.00 32.70 3.32
557 564 8.122472 ACAACTAGCAATATAAAACCAAAGCT 57.878 30.769 0.00 0.00 35.06 3.74
558 565 7.218204 CGACAACTAGCAATATAAAACCAAAGC 59.782 37.037 0.00 0.00 0.00 3.51
559 566 7.696453 CCGACAACTAGCAATATAAAACCAAAG 59.304 37.037 0.00 0.00 0.00 2.77
560 567 7.175293 ACCGACAACTAGCAATATAAAACCAAA 59.825 33.333 0.00 0.00 0.00 3.28
561 568 6.655848 ACCGACAACTAGCAATATAAAACCAA 59.344 34.615 0.00 0.00 0.00 3.67
562 569 6.174760 ACCGACAACTAGCAATATAAAACCA 58.825 36.000 0.00 0.00 0.00 3.67
563 570 6.673154 ACCGACAACTAGCAATATAAAACC 57.327 37.500 0.00 0.00 0.00 3.27
564 571 8.019094 ACAAACCGACAACTAGCAATATAAAAC 58.981 33.333 0.00 0.00 0.00 2.43
565 572 8.101654 ACAAACCGACAACTAGCAATATAAAA 57.898 30.769 0.00 0.00 0.00 1.52
566 573 7.675962 ACAAACCGACAACTAGCAATATAAA 57.324 32.000 0.00 0.00 0.00 1.40
567 574 7.675962 AACAAACCGACAACTAGCAATATAA 57.324 32.000 0.00 0.00 0.00 0.98
568 575 7.675962 AAACAAACCGACAACTAGCAATATA 57.324 32.000 0.00 0.00 0.00 0.86
569 576 6.569179 AAACAAACCGACAACTAGCAATAT 57.431 33.333 0.00 0.00 0.00 1.28
570 577 6.380095 AAAACAAACCGACAACTAGCAATA 57.620 33.333 0.00 0.00 0.00 1.90
571 578 4.911514 AAACAAACCGACAACTAGCAAT 57.088 36.364 0.00 0.00 0.00 3.56
572 579 4.664188 GAAAACAAACCGACAACTAGCAA 58.336 39.130 0.00 0.00 0.00 3.91
573 580 3.242478 CGAAAACAAACCGACAACTAGCA 60.242 43.478 0.00 0.00 0.00 3.49
574 581 3.285745 CGAAAACAAACCGACAACTAGC 58.714 45.455 0.00 0.00 0.00 3.42
575 582 3.242478 TGCGAAAACAAACCGACAACTAG 60.242 43.478 0.00 0.00 0.00 2.57
576 583 2.676839 TGCGAAAACAAACCGACAACTA 59.323 40.909 0.00 0.00 0.00 2.24
577 584 1.469308 TGCGAAAACAAACCGACAACT 59.531 42.857 0.00 0.00 0.00 3.16
578 585 1.897641 TGCGAAAACAAACCGACAAC 58.102 45.000 0.00 0.00 0.00 3.32
579 586 2.159366 ACATGCGAAAACAAACCGACAA 60.159 40.909 0.00 0.00 0.00 3.18
580 587 1.402259 ACATGCGAAAACAAACCGACA 59.598 42.857 0.00 0.00 0.00 4.35
581 588 1.778591 CACATGCGAAAACAAACCGAC 59.221 47.619 0.00 0.00 0.00 4.79
582 589 1.402259 ACACATGCGAAAACAAACCGA 59.598 42.857 0.00 0.00 0.00 4.69
583 590 1.516453 CACACATGCGAAAACAAACCG 59.484 47.619 0.00 0.00 0.00 4.44
584 591 1.257675 GCACACATGCGAAAACAAACC 59.742 47.619 0.00 0.00 43.33 3.27
585 592 2.626462 GCACACATGCGAAAACAAAC 57.374 45.000 0.00 0.00 43.33 2.93
603 610 2.726760 CGTCTTCGCATAACTAGGATGC 59.273 50.000 17.61 17.61 45.12 3.91
604 611 3.309388 CCGTCTTCGCATAACTAGGATG 58.691 50.000 0.00 0.00 35.54 3.51
605 612 2.296471 CCCGTCTTCGCATAACTAGGAT 59.704 50.000 0.00 0.00 35.54 3.24
606 613 1.679680 CCCGTCTTCGCATAACTAGGA 59.320 52.381 0.00 0.00 35.54 2.94
607 614 1.269621 CCCCGTCTTCGCATAACTAGG 60.270 57.143 0.00 0.00 35.54 3.02
608 615 1.679680 TCCCCGTCTTCGCATAACTAG 59.320 52.381 0.00 0.00 35.54 2.57
609 616 1.679680 CTCCCCGTCTTCGCATAACTA 59.320 52.381 0.00 0.00 35.54 2.24
610 617 0.460311 CTCCCCGTCTTCGCATAACT 59.540 55.000 0.00 0.00 35.54 2.24
611 618 0.175073 ACTCCCCGTCTTCGCATAAC 59.825 55.000 0.00 0.00 35.54 1.89
612 619 0.174845 CACTCCCCGTCTTCGCATAA 59.825 55.000 0.00 0.00 35.54 1.90
613 620 0.968901 ACACTCCCCGTCTTCGCATA 60.969 55.000 0.00 0.00 35.54 3.14
614 621 2.283529 ACACTCCCCGTCTTCGCAT 61.284 57.895 0.00 0.00 35.54 4.73
615 622 2.915659 ACACTCCCCGTCTTCGCA 60.916 61.111 0.00 0.00 35.54 5.10
616 623 2.432628 CACACTCCCCGTCTTCGC 60.433 66.667 0.00 0.00 35.54 4.70
617 624 2.432628 GCACACTCCCCGTCTTCG 60.433 66.667 0.00 0.00 0.00 3.79
618 625 1.079750 GAGCACACTCCCCGTCTTC 60.080 63.158 0.00 0.00 36.90 2.87
619 626 1.194781 ATGAGCACACTCCCCGTCTT 61.195 55.000 0.00 0.00 42.74 3.01
620 627 1.608717 GATGAGCACACTCCCCGTCT 61.609 60.000 0.00 0.00 42.74 4.18
621 628 1.153549 GATGAGCACACTCCCCGTC 60.154 63.158 0.00 0.00 42.74 4.79
622 629 1.267574 ATGATGAGCACACTCCCCGT 61.268 55.000 0.00 0.00 42.74 5.28
623 630 0.812811 CATGATGAGCACACTCCCCG 60.813 60.000 0.00 0.00 42.74 5.73
624 631 1.099879 GCATGATGAGCACACTCCCC 61.100 60.000 0.00 0.00 42.74 4.81
625 632 0.107312 AGCATGATGAGCACACTCCC 60.107 55.000 0.00 0.00 42.74 4.30
626 633 2.609427 TAGCATGATGAGCACACTCC 57.391 50.000 0.00 0.00 42.74 3.85
627 634 3.464907 ACATAGCATGATGAGCACACTC 58.535 45.455 0.00 0.00 43.76 3.51
628 635 3.555527 ACATAGCATGATGAGCACACT 57.444 42.857 0.00 0.00 0.00 3.55
629 636 5.936686 AATACATAGCATGATGAGCACAC 57.063 39.130 0.00 0.00 0.00 3.82
630 637 6.769341 AGAAAATACATAGCATGATGAGCACA 59.231 34.615 0.00 0.00 0.00 4.57
631 638 7.199541 AGAAAATACATAGCATGATGAGCAC 57.800 36.000 0.00 0.00 0.00 4.40
632 639 7.499895 TCAAGAAAATACATAGCATGATGAGCA 59.500 33.333 0.00 0.00 0.00 4.26
633 640 7.868775 TCAAGAAAATACATAGCATGATGAGC 58.131 34.615 0.00 0.00 0.00 4.26
634 641 9.827411 CATCAAGAAAATACATAGCATGATGAG 57.173 33.333 0.00 0.00 42.46 2.90
635 642 8.294577 GCATCAAGAAAATACATAGCATGATGA 58.705 33.333 14.17 0.00 42.46 2.92
636 643 8.297426 AGCATCAAGAAAATACATAGCATGATG 58.703 33.333 0.00 0.00 42.64 3.07
637 644 8.405418 AGCATCAAGAAAATACATAGCATGAT 57.595 30.769 0.00 0.00 0.00 2.45
638 645 7.307573 CGAGCATCAAGAAAATACATAGCATGA 60.308 37.037 0.00 0.00 33.17 3.07
639 646 6.795593 CGAGCATCAAGAAAATACATAGCATG 59.204 38.462 0.00 0.00 33.17 4.06
640 647 6.707608 TCGAGCATCAAGAAAATACATAGCAT 59.292 34.615 0.00 0.00 33.17 3.79
641 648 6.048509 TCGAGCATCAAGAAAATACATAGCA 58.951 36.000 0.00 0.00 33.17 3.49
642 649 6.530913 TCGAGCATCAAGAAAATACATAGC 57.469 37.500 0.00 0.00 33.17 2.97
643 650 8.986847 AGAATCGAGCATCAAGAAAATACATAG 58.013 33.333 0.00 0.00 33.17 2.23
644 651 8.768019 CAGAATCGAGCATCAAGAAAATACATA 58.232 33.333 0.00 0.00 33.17 2.29
645 652 7.496920 TCAGAATCGAGCATCAAGAAAATACAT 59.503 33.333 0.00 0.00 33.17 2.29
646 653 6.818142 TCAGAATCGAGCATCAAGAAAATACA 59.182 34.615 0.00 0.00 33.17 2.29
647 654 7.239166 TCAGAATCGAGCATCAAGAAAATAC 57.761 36.000 0.00 0.00 33.17 1.89
648 655 7.474398 CTCAGAATCGAGCATCAAGAAAATA 57.526 36.000 0.00 0.00 33.17 1.40
649 656 6.360844 CTCAGAATCGAGCATCAAGAAAAT 57.639 37.500 0.00 0.00 33.17 1.82
650 657 5.791367 CTCAGAATCGAGCATCAAGAAAA 57.209 39.130 0.00 0.00 33.17 2.29
661 668 4.446371 AGGTTTATTGGCTCAGAATCGAG 58.554 43.478 0.00 0.00 36.02 4.04
662 669 4.081142 TGAGGTTTATTGGCTCAGAATCGA 60.081 41.667 0.00 0.00 0.00 3.59
663 670 4.034510 GTGAGGTTTATTGGCTCAGAATCG 59.965 45.833 0.00 0.00 0.00 3.34
664 671 4.336713 GGTGAGGTTTATTGGCTCAGAATC 59.663 45.833 0.00 0.00 0.00 2.52
665 672 4.273318 GGTGAGGTTTATTGGCTCAGAAT 58.727 43.478 0.00 0.00 0.00 2.40
666 673 3.561313 GGGTGAGGTTTATTGGCTCAGAA 60.561 47.826 0.00 0.00 0.00 3.02
667 674 2.026262 GGGTGAGGTTTATTGGCTCAGA 60.026 50.000 0.00 0.00 0.00 3.27
668 675 2.025887 AGGGTGAGGTTTATTGGCTCAG 60.026 50.000 0.00 0.00 0.00 3.35
669 676 1.992557 AGGGTGAGGTTTATTGGCTCA 59.007 47.619 0.00 0.00 0.00 4.26
670 677 2.808906 AGGGTGAGGTTTATTGGCTC 57.191 50.000 0.00 0.00 0.00 4.70
671 678 3.165071 CAAAGGGTGAGGTTTATTGGCT 58.835 45.455 0.00 0.00 0.00 4.75
672 679 2.897326 ACAAAGGGTGAGGTTTATTGGC 59.103 45.455 0.00 0.00 0.00 4.52
673 680 3.190535 CGACAAAGGGTGAGGTTTATTGG 59.809 47.826 0.00 0.00 0.00 3.16
674 681 4.069304 TCGACAAAGGGTGAGGTTTATTG 58.931 43.478 0.00 0.00 0.00 1.90
675 682 4.360951 TCGACAAAGGGTGAGGTTTATT 57.639 40.909 0.00 0.00 0.00 1.40
676 683 4.360951 TTCGACAAAGGGTGAGGTTTAT 57.639 40.909 0.00 0.00 0.00 1.40
677 684 3.842007 TTCGACAAAGGGTGAGGTTTA 57.158 42.857 0.00 0.00 0.00 2.01
678 685 2.721425 TTCGACAAAGGGTGAGGTTT 57.279 45.000 0.00 0.00 0.00 3.27
679 686 2.721425 TTTCGACAAAGGGTGAGGTT 57.279 45.000 0.00 0.00 0.00 3.50
680 687 2.721425 TTTTCGACAAAGGGTGAGGT 57.279 45.000 0.00 0.00 0.00 3.85
681 688 4.517453 TGTATTTTTCGACAAAGGGTGAGG 59.483 41.667 2.86 0.00 0.00 3.86
682 689 5.682943 TGTATTTTTCGACAAAGGGTGAG 57.317 39.130 2.86 0.00 0.00 3.51
683 690 6.263392 TCAATGTATTTTTCGACAAAGGGTGA 59.737 34.615 2.86 0.16 0.00 4.02
684 691 6.442952 TCAATGTATTTTTCGACAAAGGGTG 58.557 36.000 2.86 0.00 0.00 4.61
685 692 6.294508 CCTCAATGTATTTTTCGACAAAGGGT 60.295 38.462 2.86 0.00 0.00 4.34
686 693 6.092748 CCTCAATGTATTTTTCGACAAAGGG 58.907 40.000 2.86 0.00 0.00 3.95
687 694 6.092748 CCCTCAATGTATTTTTCGACAAAGG 58.907 40.000 2.86 0.00 0.00 3.11
688 695 6.092748 CCCCTCAATGTATTTTTCGACAAAG 58.907 40.000 2.86 0.00 0.00 2.77
689 696 5.565834 GCCCCTCAATGTATTTTTCGACAAA 60.566 40.000 0.00 0.00 0.00 2.83
690 697 4.082463 GCCCCTCAATGTATTTTTCGACAA 60.082 41.667 0.00 0.00 0.00 3.18
691 698 3.442273 GCCCCTCAATGTATTTTTCGACA 59.558 43.478 0.00 0.00 0.00 4.35
692 699 3.486875 CGCCCCTCAATGTATTTTTCGAC 60.487 47.826 0.00 0.00 0.00 4.20
693 700 2.680841 CGCCCCTCAATGTATTTTTCGA 59.319 45.455 0.00 0.00 0.00 3.71
694 701 2.223479 CCGCCCCTCAATGTATTTTTCG 60.223 50.000 0.00 0.00 0.00 3.46
695 702 3.020984 TCCGCCCCTCAATGTATTTTTC 58.979 45.455 0.00 0.00 0.00 2.29
696 703 3.094484 TCCGCCCCTCAATGTATTTTT 57.906 42.857 0.00 0.00 0.00 1.94
697 704 2.818751 TCCGCCCCTCAATGTATTTT 57.181 45.000 0.00 0.00 0.00 1.82
698 705 4.447138 TTATCCGCCCCTCAATGTATTT 57.553 40.909 0.00 0.00 0.00 1.40
701 708 3.935818 TTTTATCCGCCCCTCAATGTA 57.064 42.857 0.00 0.00 0.00 2.29
722 729 2.167900 GAGTGTATACCCTCGCACCTTT 59.832 50.000 0.00 0.00 32.75 3.11
749 756 8.170730 ACTGTATTCTCCAGGTTTATTTTTCCT 58.829 33.333 0.00 0.00 34.16 3.36
757 764 6.326583 CCCTATCACTGTATTCTCCAGGTTTA 59.673 42.308 0.00 0.00 34.16 2.01
762 769 3.007398 GCCCCTATCACTGTATTCTCCAG 59.993 52.174 0.00 0.00 36.01 3.86
778 785 2.104111 CGATTTGACCACTATGCCCCTA 59.896 50.000 0.00 0.00 0.00 3.53
896 908 1.078426 GCTTGCTCGGTGGGTGTAT 60.078 57.895 0.00 0.00 0.00 2.29
1130 1208 1.183549 GGAGACGGTGATGTGGTAGT 58.816 55.000 0.00 0.00 0.00 2.73
1191 1269 3.219928 GCGGCATCGAGGAGGAGA 61.220 66.667 0.00 0.00 39.00 3.71
2259 2426 1.289066 CACCTTGTCTTCGGCGAGA 59.711 57.895 10.46 7.33 0.00 4.04
2322 2489 2.278013 GCCTCCGTCGTCGATGAC 60.278 66.667 24.88 24.88 39.71 3.06
2373 2540 2.649034 GACGACGTCTCCTTGGCA 59.351 61.111 20.52 0.00 0.00 4.92
2715 2890 0.244994 GCCACTTGAAGAGCGAGAGA 59.755 55.000 0.00 0.00 0.00 3.10
2718 2893 2.097038 CGGCCACTTGAAGAGCGAG 61.097 63.158 2.24 0.00 0.00 5.03
2835 3010 4.227134 CGGCACTCCTCCCCGATG 62.227 72.222 0.00 0.00 44.55 3.84
3025 3203 2.821969 AGAACACATGCAAGGAATGGAC 59.178 45.455 0.00 0.00 29.34 4.02
3049 3229 9.781834 TTTACAACCAAAATTATAGCAAGATCG 57.218 29.630 0.00 0.00 0.00 3.69
3115 3295 7.886446 TGTGATTCATGTTGGATGATATATGCT 59.114 33.333 0.00 0.00 0.00 3.79
3117 3297 9.005777 TGTGTGATTCATGTTGGATGATATATG 57.994 33.333 0.00 0.00 0.00 1.78
3118 3298 9.577222 TTGTGTGATTCATGTTGGATGATATAT 57.423 29.630 0.00 0.00 0.00 0.86
3232 3423 6.660949 ACCTCCATATAATTTTAGAGCCATGC 59.339 38.462 0.00 0.00 0.00 4.06
3291 3487 8.655935 AGGTGAAATGGAAATCTTACATTCTT 57.344 30.769 0.00 0.00 34.00 2.52
3296 3492 8.477419 AAGAAAGGTGAAATGGAAATCTTACA 57.523 30.769 0.00 0.00 0.00 2.41
3302 3498 6.464322 GGTGGAAAGAAAGGTGAAATGGAAAT 60.464 38.462 0.00 0.00 0.00 2.17
3306 3502 3.640967 TGGTGGAAAGAAAGGTGAAATGG 59.359 43.478 0.00 0.00 0.00 3.16
3307 3503 4.501400 GGTGGTGGAAAGAAAGGTGAAATG 60.501 45.833 0.00 0.00 0.00 2.32
3322 3518 1.766864 TTGGACGAAGGGTGGTGGA 60.767 57.895 0.00 0.00 0.00 4.02
3323 3519 1.599797 GTTGGACGAAGGGTGGTGG 60.600 63.158 0.00 0.00 0.00 4.61
3326 3522 0.605589 GAAGGTTGGACGAAGGGTGG 60.606 60.000 0.00 0.00 0.00 4.61
3366 3564 8.857694 TGGTTCAGAAGGTAAGTAAATTAAGG 57.142 34.615 0.00 0.00 0.00 2.69
3423 3621 8.902806 TGACCATGGATTGTCTTATATTTTGAC 58.097 33.333 21.47 0.00 32.67 3.18
3436 3634 5.953548 TCATCAAATTCTGACCATGGATTGT 59.046 36.000 21.47 0.00 36.69 2.71
3441 3639 3.697542 TGCTCATCAAATTCTGACCATGG 59.302 43.478 11.19 11.19 36.69 3.66
3444 3642 5.988310 AAATGCTCATCAAATTCTGACCA 57.012 34.783 0.00 0.00 36.69 4.02
3445 3643 8.937634 AAATAAATGCTCATCAAATTCTGACC 57.062 30.769 0.00 0.00 36.69 4.02
3472 3670 6.054941 ACCTGTCAATGATAATGCGATTGTA 58.945 36.000 0.00 0.00 0.00 2.41
3477 3675 6.765512 TGATTAACCTGTCAATGATAATGCGA 59.234 34.615 0.00 0.00 0.00 5.10
3486 3684 5.633830 AGCTTGTGATTAACCTGTCAATG 57.366 39.130 0.00 0.00 0.00 2.82
3598 3813 3.057596 GCGTTCACCAGATTTCATTTCCA 60.058 43.478 0.00 0.00 0.00 3.53
3614 3829 4.742201 GCCTCCAGCGAGCGTTCA 62.742 66.667 0.00 0.00 34.49 3.18
3623 3838 4.748144 CCTGGGTTGGCCTCCAGC 62.748 72.222 25.19 11.46 46.79 4.85
3804 6637 9.069078 CAAGCTCAATACATGTAATTCACAAAG 57.931 33.333 10.14 1.19 41.55 2.77
3822 6655 7.975616 GCTTCAAATCCATATAAACAAGCTCAA 59.024 33.333 0.00 0.00 32.69 3.02
3826 6659 9.801873 TTTAGCTTCAAATCCATATAAACAAGC 57.198 29.630 0.00 0.00 35.09 4.01
3895 6728 8.993404 TTTCAAAAATGGGAAAAATTCTGGAT 57.007 26.923 0.00 0.00 30.59 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.