Multiple sequence alignment - TraesCS2D01G584900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G584900 chr2D 100.000 3953 0 0 1 3953 644093052 644097004 0.000000e+00 7300
1 TraesCS2D01G584900 chr2A 92.719 2843 116 34 758 3571 769221234 769224014 0.000000e+00 4019
2 TraesCS2D01G584900 chr2A 89.098 743 64 10 1 733 769220586 769221321 0.000000e+00 907
3 TraesCS2D01G584900 chr2A 94.253 174 5 2 3778 3948 769224142 769224313 1.090000e-65 261
4 TraesCS2D01G584900 chr2B 91.719 2874 133 48 758 3571 792992153 792989325 0.000000e+00 3892
5 TraesCS2D01G584900 chr2B 88.021 768 54 19 1 736 792992820 792992059 0.000000e+00 874
6 TraesCS2D01G584900 chr2B 90.698 215 14 1 3568 3782 792988348 792988140 8.360000e-72 281
7 TraesCS2D01G584900 chr7A 75.495 555 104 22 2128 2663 474296752 474296211 3.950000e-60 243
8 TraesCS2D01G584900 chr1D 91.736 121 10 0 2834 2954 367429297 367429177 6.790000e-38 169
9 TraesCS2D01G584900 chr1D 83.660 153 23 2 2538 2688 367429526 367429374 4.120000e-30 143
10 TraesCS2D01G584900 chr1A 90.909 121 11 0 2834 2954 466927481 466927361 3.160000e-36 163
11 TraesCS2D01G584900 chr1A 84.564 149 23 0 2540 2688 466927712 466927564 8.850000e-32 148
12 TraesCS2D01G584900 chr1B 90.083 121 12 0 2834 2954 491982786 491982666 1.470000e-34 158
13 TraesCS2D01G584900 chr1B 86.093 151 15 5 2526 2673 491983025 491982878 1.470000e-34 158
14 TraesCS2D01G584900 chr3B 88.095 126 15 0 2545 2670 647680721 647680846 2.460000e-32 150
15 TraesCS2D01G584900 chr3D 86.508 126 17 0 2545 2670 484823028 484823153 5.330000e-29 139
16 TraesCS2D01G584900 chr3A 85.714 126 18 0 2545 2670 627864874 627864999 2.480000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G584900 chr2D 644093052 644097004 3952 False 7300.000000 7300 100.000000 1 3953 1 chr2D.!!$F1 3952
1 TraesCS2D01G584900 chr2A 769220586 769224313 3727 False 1729.000000 4019 92.023333 1 3948 3 chr2A.!!$F1 3947
2 TraesCS2D01G584900 chr2B 792988140 792992820 4680 True 1682.333333 3892 90.146000 1 3782 3 chr2B.!!$R1 3781
3 TraesCS2D01G584900 chr7A 474296211 474296752 541 True 243.000000 243 75.495000 2128 2663 1 chr7A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 50 0.101040 GCTGTGTGCAAAGCAACTCA 59.899 50.0 9.31 0.0 41.47 3.41 F
921 961 0.470766 AGGTTTTGACCACCGTGCTA 59.529 50.0 0.00 0.0 39.56 3.49 F
1523 1569 0.595095 CACTTTCTCTTGCACAGCCC 59.405 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1563 1.152652 ATCTCGAGATCCGGGCTGT 60.153 57.895 22.32 0.00 39.00 4.40 R
2124 2176 1.470098 CCGAGGAAATTTGACCTGCAG 59.530 52.381 6.78 6.78 36.57 4.41 R
2988 3061 0.459237 TCGACGGAGAGACGGTACTC 60.459 60.000 0.00 6.35 38.48 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 1.198637 GATGAACTTGAGGCTGTGTGC 59.801 52.381 0.00 0.00 41.94 4.57
34 36 0.107263 TGAACTTGAGGCTGTGTGCA 60.107 50.000 0.00 0.00 45.15 4.57
37 43 1.027357 ACTTGAGGCTGTGTGCAAAG 58.973 50.000 0.00 0.00 45.15 2.77
44 50 0.101040 GCTGTGTGCAAAGCAACTCA 59.899 50.000 9.31 0.00 41.47 3.41
64 70 7.338800 ACTCATCAGATTCAACTGTTTTGTT 57.661 32.000 0.00 0.00 38.79 2.83
65 71 7.775120 ACTCATCAGATTCAACTGTTTTGTTT 58.225 30.769 0.00 0.00 38.79 2.83
71 77 6.974622 CAGATTCAACTGTTTTGTTTAGCAGT 59.025 34.615 0.00 0.00 43.13 4.40
72 78 8.128582 CAGATTCAACTGTTTTGTTTAGCAGTA 58.871 33.333 0.00 0.00 40.79 2.74
117 126 6.024552 TGGCTGTTTTTCATTTATCCAGAC 57.975 37.500 0.00 0.00 0.00 3.51
248 263 6.435277 ACTCCACCGTTTCTTAGATTGTACTA 59.565 38.462 0.00 0.00 0.00 1.82
249 264 6.860080 TCCACCGTTTCTTAGATTGTACTAG 58.140 40.000 0.00 0.00 0.00 2.57
250 265 6.435277 TCCACCGTTTCTTAGATTGTACTAGT 59.565 38.462 0.00 0.00 0.00 2.57
251 266 7.611467 TCCACCGTTTCTTAGATTGTACTAGTA 59.389 37.037 0.00 0.00 0.00 1.82
252 267 7.914346 CCACCGTTTCTTAGATTGTACTAGTAG 59.086 40.741 1.87 0.00 0.00 2.57
255 270 7.972277 CCGTTTCTTAGATTGTACTAGTAGCAA 59.028 37.037 15.56 15.56 0.00 3.91
256 271 8.796278 CGTTTCTTAGATTGTACTAGTAGCAAC 58.204 37.037 15.54 3.91 0.00 4.17
282 302 9.994432 CTAGCAAAGACTAATATTTCCAAGTTG 57.006 33.333 0.00 0.00 0.00 3.16
374 400 4.124238 CGCGGATTAAGGATAGGAACAAA 58.876 43.478 0.00 0.00 0.00 2.83
472 499 3.038946 CCGCATCTGGCAATGTTTG 57.961 52.632 10.07 0.00 45.17 2.93
490 517 7.834068 ATGTTTGCAGTATCTAGTACACAAG 57.166 36.000 0.00 0.00 34.87 3.16
524 551 2.849942 TCAACTGATTGGTCCACTGTG 58.150 47.619 0.00 0.00 36.39 3.66
555 583 2.838202 GGTCTGGATTAGTCAAGTGGGA 59.162 50.000 0.00 0.00 0.00 4.37
668 696 7.475771 CTCTTAAGCATGCTTAGTTTAGGAG 57.524 40.000 32.55 25.33 39.36 3.69
669 697 5.817816 TCTTAAGCATGCTTAGTTTAGGAGC 59.182 40.000 32.55 0.00 39.36 4.70
670 698 3.922171 AGCATGCTTAGTTTAGGAGCT 57.078 42.857 16.30 0.00 37.32 4.09
671 699 5.359194 AAGCATGCTTAGTTTAGGAGCTA 57.641 39.130 31.09 0.00 37.32 3.32
672 700 4.698575 AGCATGCTTAGTTTAGGAGCTAC 58.301 43.478 16.30 0.00 37.32 3.58
673 701 3.810386 GCATGCTTAGTTTAGGAGCTACC 59.190 47.826 11.37 0.00 37.32 3.18
674 702 4.683400 GCATGCTTAGTTTAGGAGCTACCA 60.683 45.833 11.37 0.00 42.04 3.25
675 703 5.615289 CATGCTTAGTTTAGGAGCTACCAT 58.385 41.667 0.00 0.00 42.04 3.55
676 704 5.023533 TGCTTAGTTTAGGAGCTACCATG 57.976 43.478 0.00 0.00 42.04 3.66
677 705 3.810386 GCTTAGTTTAGGAGCTACCATGC 59.190 47.826 0.00 0.00 42.04 4.06
679 707 3.550437 AGTTTAGGAGCTACCATGCTG 57.450 47.619 0.00 0.00 44.17 4.41
682 710 2.187946 GGAGCTACCATGCTGCGT 59.812 61.111 0.00 0.00 44.17 5.24
683 711 2.176273 GGAGCTACCATGCTGCGTG 61.176 63.158 14.82 14.82 44.17 5.34
684 712 2.817423 GAGCTACCATGCTGCGTGC 61.817 63.158 16.26 5.09 44.17 5.34
685 713 4.228097 GCTACCATGCTGCGTGCG 62.228 66.667 16.26 11.71 46.63 5.34
686 714 2.509111 CTACCATGCTGCGTGCGA 60.509 61.111 16.26 5.18 46.63 5.10
687 715 1.884464 CTACCATGCTGCGTGCGAT 60.884 57.895 16.26 6.54 46.63 4.58
688 716 0.597377 CTACCATGCTGCGTGCGATA 60.597 55.000 16.26 7.30 46.63 2.92
689 717 0.874175 TACCATGCTGCGTGCGATAC 60.874 55.000 16.26 0.00 46.63 2.24
702 730 3.441163 GTGCGATACGTCAACCTTATCA 58.559 45.455 0.00 0.00 0.00 2.15
703 731 3.861113 GTGCGATACGTCAACCTTATCAA 59.139 43.478 0.00 0.00 0.00 2.57
704 732 3.861113 TGCGATACGTCAACCTTATCAAC 59.139 43.478 0.00 0.00 0.00 3.18
705 733 3.861113 GCGATACGTCAACCTTATCAACA 59.139 43.478 0.00 0.00 0.00 3.33
706 734 4.026804 GCGATACGTCAACCTTATCAACAG 60.027 45.833 0.00 0.00 0.00 3.16
707 735 5.337554 CGATACGTCAACCTTATCAACAGA 58.662 41.667 0.00 0.00 0.00 3.41
708 736 5.977725 CGATACGTCAACCTTATCAACAGAT 59.022 40.000 0.00 0.00 0.00 2.90
709 737 7.136772 CGATACGTCAACCTTATCAACAGATA 58.863 38.462 0.00 0.00 0.00 1.98
710 738 7.323895 CGATACGTCAACCTTATCAACAGATAG 59.676 40.741 0.00 0.00 0.00 2.08
711 739 5.109903 ACGTCAACCTTATCAACAGATAGC 58.890 41.667 0.00 0.00 0.00 2.97
712 740 5.109210 CGTCAACCTTATCAACAGATAGCA 58.891 41.667 0.00 0.00 0.00 3.49
713 741 5.580691 CGTCAACCTTATCAACAGATAGCAA 59.419 40.000 0.00 0.00 0.00 3.91
714 742 6.258727 CGTCAACCTTATCAACAGATAGCAAT 59.741 38.462 0.00 0.00 0.00 3.56
715 743 7.438160 CGTCAACCTTATCAACAGATAGCAATA 59.562 37.037 0.00 0.00 0.00 1.90
716 744 8.768955 GTCAACCTTATCAACAGATAGCAATAG 58.231 37.037 0.00 0.00 0.00 1.73
717 745 8.704668 TCAACCTTATCAACAGATAGCAATAGA 58.295 33.333 0.00 0.00 0.00 1.98
718 746 9.330063 CAACCTTATCAACAGATAGCAATAGAA 57.670 33.333 0.00 0.00 0.00 2.10
720 748 9.499479 ACCTTATCAACAGATAGCAATAGAATG 57.501 33.333 0.00 0.00 0.00 2.67
721 749 9.499479 CCTTATCAACAGATAGCAATAGAATGT 57.501 33.333 0.00 0.00 0.00 2.71
748 776 6.834168 AAAATCTAAGGTGTGTTATGGGTG 57.166 37.500 0.00 0.00 0.00 4.61
749 777 5.514500 AATCTAAGGTGTGTTATGGGTGT 57.486 39.130 0.00 0.00 0.00 4.16
750 778 4.986054 TCTAAGGTGTGTTATGGGTGTT 57.014 40.909 0.00 0.00 0.00 3.32
751 779 6.630203 ATCTAAGGTGTGTTATGGGTGTTA 57.370 37.500 0.00 0.00 0.00 2.41
752 780 5.797051 TCTAAGGTGTGTTATGGGTGTTAC 58.203 41.667 0.00 0.00 0.00 2.50
753 781 4.440826 AAGGTGTGTTATGGGTGTTACA 57.559 40.909 0.00 0.00 0.00 2.41
754 782 4.650972 AGGTGTGTTATGGGTGTTACAT 57.349 40.909 0.00 0.00 0.00 2.29
755 783 5.765576 AGGTGTGTTATGGGTGTTACATA 57.234 39.130 0.00 0.00 0.00 2.29
756 784 6.129414 AGGTGTGTTATGGGTGTTACATAA 57.871 37.500 0.00 0.00 38.19 1.90
822 854 3.181493 ACGTCGGTTTTGTCGCTAGATAT 60.181 43.478 0.00 0.00 0.00 1.63
906 946 5.509670 GCCTTTGAGCTTATTTCACAAGGTT 60.510 40.000 6.34 0.00 36.41 3.50
911 951 6.503524 TGAGCTTATTTCACAAGGTTTTGAC 58.496 36.000 0.00 0.00 37.73 3.18
921 961 0.470766 AGGTTTTGACCACCGTGCTA 59.529 50.000 0.00 0.00 39.56 3.49
938 978 5.156355 CGTGCTACTTTTGAATTGCAGATT 58.844 37.500 0.00 0.00 0.00 2.40
1320 1362 5.023533 TGTGCAAGGATATAGTGAGGAAC 57.976 43.478 0.00 0.00 0.00 3.62
1391 1434 5.215252 ACCACACCATTCTATCCGATTAG 57.785 43.478 0.00 0.00 0.00 1.73
1418 1461 6.400568 AGAAAACTTGGCATCCATATTGTTG 58.599 36.000 0.00 0.00 31.53 3.33
1445 1488 7.054124 TCAGTCTGGCCCTGTATTTAATTAAG 58.946 38.462 0.00 0.00 0.00 1.85
1446 1489 7.054124 CAGTCTGGCCCTGTATTTAATTAAGA 58.946 38.462 0.00 0.00 0.00 2.10
1447 1490 7.556275 CAGTCTGGCCCTGTATTTAATTAAGAA 59.444 37.037 0.00 0.00 0.00 2.52
1455 1498 9.793259 CCCTGTATTTAATTAAGAAGCTATCCA 57.207 33.333 0.00 0.00 0.00 3.41
1506 1552 8.603242 TTCTTATCTCTTAACACTTGGTTCAC 57.397 34.615 0.00 0.00 40.96 3.18
1513 1559 6.650120 TCTTAACACTTGGTTCACTTTCTCT 58.350 36.000 0.00 0.00 40.96 3.10
1516 1562 3.378427 ACACTTGGTTCACTTTCTCTTGC 59.622 43.478 0.00 0.00 0.00 4.01
1517 1563 3.378112 CACTTGGTTCACTTTCTCTTGCA 59.622 43.478 0.00 0.00 0.00 4.08
1523 1569 0.595095 CACTTTCTCTTGCACAGCCC 59.405 55.000 0.00 0.00 0.00 5.19
1646 1692 1.230635 CCTGCACTTCTCCGTTGTGG 61.231 60.000 0.00 0.00 40.09 4.17
1696 1743 9.398170 AGTTTTGATGATTCACTAACGATTTTG 57.602 29.630 0.00 0.00 34.31 2.44
1710 1757 9.341899 ACTAACGATTTTGAAGTATTGAAATGC 57.658 29.630 0.00 0.00 29.68 3.56
1809 1860 8.893219 TCATAAATCTGTATTTGCTAGAGGTG 57.107 34.615 0.00 0.00 36.02 4.00
2028 2080 6.601332 ACATCGGGAAATTGAGGTAACATAT 58.399 36.000 0.00 0.00 41.41 1.78
2035 2087 7.201911 GGGAAATTGAGGTAACATATCCTTTGG 60.202 40.741 0.00 0.00 41.41 3.28
2124 2176 3.350219 ACAGACAACATGGATGGTACC 57.650 47.619 4.43 4.43 0.00 3.34
2259 2311 1.149101 TCTCCCCAAAAGTTCCAGCT 58.851 50.000 0.00 0.00 0.00 4.24
2262 2314 1.114722 CCCCAAAAGTTCCAGCTGCA 61.115 55.000 8.66 0.00 0.00 4.41
2277 2329 3.127533 GCAACTGGCAGCTACCCG 61.128 66.667 15.89 0.00 43.97 5.28
2295 2347 1.338337 CCGATCGCTCAGGTGAACTAT 59.662 52.381 10.32 0.00 35.48 2.12
2541 2605 3.122323 GGCGACGAAAATGCGGGA 61.122 61.111 0.00 0.00 35.12 5.14
2580 2644 1.878953 TTCTCAAGAACAAGTCGCCC 58.121 50.000 0.00 0.00 0.00 6.13
2797 2870 2.328099 GCTGGCAGTTCCTTGTCGG 61.328 63.158 17.16 0.00 35.26 4.79
2820 2893 2.362503 TCGTCCTCGAGCCACCAT 60.363 61.111 6.99 0.00 41.35 3.55
2949 3022 2.281070 ACCAAGCTGGCGTGTGAG 60.281 61.111 7.61 0.00 42.67 3.51
2981 3054 1.527034 TTCTCAGTGCAACATCAGCC 58.473 50.000 0.00 0.00 41.43 4.85
2988 3061 0.522626 TGCAACATCAGCCGTCATTG 59.477 50.000 0.00 0.00 0.00 2.82
2992 3065 3.261580 CAACATCAGCCGTCATTGAGTA 58.738 45.455 0.00 0.00 0.00 2.59
2993 3066 2.893637 ACATCAGCCGTCATTGAGTAC 58.106 47.619 0.00 0.00 0.00 2.73
3009 3082 0.459237 GTACCGTCTCTCCGTCGAGA 60.459 60.000 0.00 0.00 43.08 4.04
3036 3109 4.338710 CGGGCCTGGGAACGGAAA 62.339 66.667 2.57 0.00 39.98 3.13
3037 3110 2.359011 GGGCCTGGGAACGGAAAT 59.641 61.111 0.84 0.00 39.98 2.17
3038 3111 2.052104 GGGCCTGGGAACGGAAATG 61.052 63.158 0.84 0.00 39.98 2.32
3039 3112 1.001393 GGCCTGGGAACGGAAATGA 60.001 57.895 0.00 0.00 39.98 2.57
3040 3113 0.610785 GGCCTGGGAACGGAAATGAA 60.611 55.000 0.00 0.00 39.98 2.57
3041 3114 0.811281 GCCTGGGAACGGAAATGAAG 59.189 55.000 0.00 0.00 39.98 3.02
3042 3115 1.463674 CCTGGGAACGGAAATGAAGG 58.536 55.000 0.00 0.00 39.98 3.46
3045 3118 1.425831 TGGGAACGGAAATGAAGGGAA 59.574 47.619 0.00 0.00 0.00 3.97
3052 3125 2.419667 GGAAATGAAGGGAACGAACGA 58.580 47.619 0.14 0.00 0.00 3.85
3110 3192 0.476771 TGGTTCAGTTTCAGTCCCCC 59.523 55.000 0.00 0.00 0.00 5.40
3139 3221 6.015519 TGTGCTGGTTAAAGCTGTTATCAATT 60.016 34.615 1.10 0.00 43.90 2.32
3148 3230 5.582689 AGCTGTTATCAATTGGGTAAAGC 57.417 39.130 5.42 14.31 0.00 3.51
3151 3233 5.679638 GCTGTTATCAATTGGGTAAAGCTGG 60.680 44.000 5.42 0.00 0.00 4.85
3274 3362 5.071653 TGATTGATTGCTACCTATGCCTGTA 59.928 40.000 0.00 0.00 0.00 2.74
3320 3411 6.820656 ACTGGTATGAAATGTGAAGAGATGTC 59.179 38.462 0.00 0.00 0.00 3.06
3326 3417 6.687604 TGAAATGTGAAGAGATGTCGAGTTA 58.312 36.000 0.00 0.00 0.00 2.24
3341 3433 4.155644 GTCGAGTTACAAGGTAGTGCTAGT 59.844 45.833 0.00 0.00 0.00 2.57
3432 3533 1.089920 GCCCAGACAGCAACATGTAG 58.910 55.000 0.00 0.00 32.25 2.74
3477 3578 4.202398 GGACTGATGTGACCATGGATGTAT 60.202 45.833 21.47 7.38 0.00 2.29
3490 3591 9.288576 GACCATGGATGTATGAAATCTTGATTA 57.711 33.333 21.47 0.00 0.00 1.75
3513 3615 2.101082 TCAGTTGATTTGCTTGCTTGCA 59.899 40.909 0.27 0.27 41.65 4.08
3514 3616 2.475111 CAGTTGATTTGCTTGCTTGCAG 59.525 45.455 4.58 0.00 44.27 4.41
3515 3617 2.363038 AGTTGATTTGCTTGCTTGCAGA 59.637 40.909 4.58 1.45 44.27 4.26
3571 4072 9.336171 TGCCAACATTAGCTTAAAAGAAAAATT 57.664 25.926 0.00 0.00 0.00 1.82
3576 4077 9.762933 ACATTAGCTTAAAAGAAAAATTCTGCA 57.237 25.926 0.00 0.00 40.59 4.41
3579 4080 5.691754 AGCTTAAAAGAAAAATTCTGCACCG 59.308 36.000 0.00 0.00 40.59 4.94
3582 4083 5.523438 AAAAGAAAAATTCTGCACCGGTA 57.477 34.783 6.87 0.00 40.59 4.02
3583 4084 4.499037 AAGAAAAATTCTGCACCGGTAC 57.501 40.909 6.87 0.52 40.59 3.34
3623 4718 0.371645 GCACGTACAGCTGCAGAATC 59.628 55.000 20.43 0.00 33.31 2.52
3642 4737 3.551259 TGGCGACCAGATTTCTTCC 57.449 52.632 0.00 0.00 0.00 3.46
3664 4759 0.250640 CTCTGCACTGCCTTGGTTCT 60.251 55.000 0.00 0.00 0.00 3.01
3689 4784 0.458716 GCTAGCTTGTCGTGTCCTCC 60.459 60.000 7.70 0.00 0.00 4.30
3705 4800 0.319405 CTCCTTGGCTTTGGCTTTGG 59.681 55.000 0.00 0.00 38.73 3.28
3706 4801 1.301953 CCTTGGCTTTGGCTTTGGC 60.302 57.895 0.00 0.00 38.73 4.52
3707 4802 1.750297 CTTGGCTTTGGCTTTGGCT 59.250 52.632 0.00 0.00 38.73 4.75
3708 4803 0.107268 CTTGGCTTTGGCTTTGGCTT 59.893 50.000 0.00 0.00 38.73 4.35
3709 4804 0.545646 TTGGCTTTGGCTTTGGCTTT 59.454 45.000 0.00 0.00 38.73 3.51
3710 4805 0.179051 TGGCTTTGGCTTTGGCTTTG 60.179 50.000 0.00 0.00 38.73 2.77
3724 4819 6.855914 GCTTTGGCTTTGGCTTAATTTAAAAC 59.144 34.615 0.00 0.00 38.73 2.43
3770 4865 3.697542 CACTGGCAATCCAATCATTCAGA 59.302 43.478 0.00 0.00 42.91 3.27
3772 4867 4.401519 ACTGGCAATCCAATCATTCAGAAG 59.598 41.667 0.00 0.00 42.91 2.85
3885 4983 3.376234 GCAGATACACACACATCTTGCAT 59.624 43.478 0.00 0.00 31.42 3.96
3907 5005 2.158769 TGCACTGTTGAGTTGTCTGGAT 60.159 45.455 0.00 0.00 0.00 3.41
3909 5007 3.805108 GCACTGTTGAGTTGTCTGGATCT 60.805 47.826 0.00 0.00 0.00 2.75
3917 5015 3.242867 AGTTGTCTGGATCTCTCCACAA 58.757 45.455 0.00 0.00 46.95 3.33
3920 5018 5.664908 AGTTGTCTGGATCTCTCCACAATAT 59.335 40.000 0.00 0.00 46.95 1.28
3948 5046 2.855963 GCAGCAACATGTACGTACGTAT 59.144 45.455 29.05 14.28 32.82 3.06
3949 5047 3.061403 GCAGCAACATGTACGTACGTATC 60.061 47.826 29.05 21.65 32.82 2.24
3950 5048 4.099824 CAGCAACATGTACGTACGTATCA 58.900 43.478 29.05 25.65 32.82 2.15
3951 5049 4.204370 CAGCAACATGTACGTACGTATCAG 59.796 45.833 29.05 22.05 32.82 2.90
3952 5050 3.061403 GCAACATGTACGTACGTATCAGC 60.061 47.826 29.05 21.48 32.82 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 5.856986 CAGTTGAATCTGATGAGTTGCTTTG 59.143 40.000 0.00 0.00 37.61 2.77
34 36 5.533903 ACAGTTGAATCTGATGAGTTGCTTT 59.466 36.000 0.65 0.00 38.63 3.51
37 43 5.368256 AACAGTTGAATCTGATGAGTTGC 57.632 39.130 0.65 0.00 38.63 4.17
44 50 7.715657 TGCTAAACAAAACAGTTGAATCTGAT 58.284 30.769 0.65 0.00 38.63 2.90
64 70 6.539173 TCTTTCCTTCACCAAATACTGCTAA 58.461 36.000 0.00 0.00 0.00 3.09
65 71 6.121776 TCTTTCCTTCACCAAATACTGCTA 57.878 37.500 0.00 0.00 0.00 3.49
71 77 5.538433 CAGGGTTTCTTTCCTTCACCAAATA 59.462 40.000 0.00 0.00 0.00 1.40
72 78 4.344968 CAGGGTTTCTTTCCTTCACCAAAT 59.655 41.667 0.00 0.00 0.00 2.32
248 263 9.892130 AAATATTAGTCTTTGCTAGTTGCTACT 57.108 29.630 6.00 6.00 43.37 2.57
250 265 9.326413 GGAAATATTAGTCTTTGCTAGTTGCTA 57.674 33.333 0.00 0.00 43.37 3.49
251 266 7.829211 TGGAAATATTAGTCTTTGCTAGTTGCT 59.171 33.333 0.00 0.00 43.37 3.91
252 267 7.985476 TGGAAATATTAGTCTTTGCTAGTTGC 58.015 34.615 0.00 0.00 43.25 4.17
255 270 9.740710 AACTTGGAAATATTAGTCTTTGCTAGT 57.259 29.630 0.00 0.93 39.19 2.57
256 271 9.994432 CAACTTGGAAATATTAGTCTTTGCTAG 57.006 33.333 0.00 0.00 33.92 3.42
282 302 6.250951 GCGCGTAGTGGAGTAGAATATTTATC 59.749 42.308 8.43 0.00 39.19 1.75
285 306 4.296690 GCGCGTAGTGGAGTAGAATATTT 58.703 43.478 8.43 0.00 39.19 1.40
291 312 2.466982 CGGCGCGTAGTGGAGTAGA 61.467 63.158 8.43 0.00 39.19 2.59
374 400 5.445964 TCAGCAAAACTAACCCTTTTCTCT 58.554 37.500 0.00 0.00 0.00 3.10
465 492 7.148407 GCTTGTGTACTAGATACTGCAAACATT 60.148 37.037 0.00 0.00 34.56 2.71
472 499 4.035324 TCTCGCTTGTGTACTAGATACTGC 59.965 45.833 0.00 1.49 34.56 4.40
473 500 5.736486 TCTCGCTTGTGTACTAGATACTG 57.264 43.478 0.00 0.00 34.56 2.74
474 501 6.542735 TCATTCTCGCTTGTGTACTAGATACT 59.457 38.462 0.00 0.00 34.56 2.12
490 517 6.417327 CAATCAGTTGATTAGTCATTCTCGC 58.583 40.000 7.01 0.00 42.41 5.03
555 583 5.763876 AGCCTAACAGAGACTAAACCATT 57.236 39.130 0.00 0.00 0.00 3.16
645 673 5.817816 GCTCCTAAACTAAGCATGCTTAAGA 59.182 40.000 33.51 22.44 37.97 2.10
646 674 5.819901 AGCTCCTAAACTAAGCATGCTTAAG 59.180 40.000 33.51 27.37 37.97 1.85
647 675 5.745227 AGCTCCTAAACTAAGCATGCTTAA 58.255 37.500 33.51 21.32 37.97 1.85
648 676 5.359194 AGCTCCTAAACTAAGCATGCTTA 57.641 39.130 32.44 32.44 38.51 3.09
649 677 4.227864 AGCTCCTAAACTAAGCATGCTT 57.772 40.909 33.70 33.70 38.51 3.91
650 678 3.922171 AGCTCCTAAACTAAGCATGCT 57.078 42.857 16.30 16.30 38.51 3.79
651 679 3.810386 GGTAGCTCCTAAACTAAGCATGC 59.190 47.826 10.51 10.51 38.51 4.06
652 680 5.023533 TGGTAGCTCCTAAACTAAGCATG 57.976 43.478 0.00 0.00 38.51 4.06
653 681 5.615289 CATGGTAGCTCCTAAACTAAGCAT 58.385 41.667 0.00 0.00 38.51 3.79
654 682 4.683400 GCATGGTAGCTCCTAAACTAAGCA 60.683 45.833 0.00 0.00 38.51 3.91
655 683 3.810386 GCATGGTAGCTCCTAAACTAAGC 59.190 47.826 0.00 0.00 37.07 3.09
656 684 5.053145 CAGCATGGTAGCTCCTAAACTAAG 58.947 45.833 0.00 0.00 44.54 2.18
657 685 4.683400 GCAGCATGGTAGCTCCTAAACTAA 60.683 45.833 0.00 0.00 44.54 2.24
658 686 3.181465 GCAGCATGGTAGCTCCTAAACTA 60.181 47.826 0.00 0.00 44.54 2.24
659 687 2.420687 GCAGCATGGTAGCTCCTAAACT 60.421 50.000 0.00 0.00 44.54 2.66
660 688 1.943340 GCAGCATGGTAGCTCCTAAAC 59.057 52.381 0.00 0.00 44.54 2.01
661 689 1.473257 CGCAGCATGGTAGCTCCTAAA 60.473 52.381 14.40 0.00 44.54 1.85
662 690 0.104855 CGCAGCATGGTAGCTCCTAA 59.895 55.000 14.40 0.00 44.54 2.69
663 691 1.043116 ACGCAGCATGGTAGCTCCTA 61.043 55.000 14.40 0.00 44.54 2.94
664 692 2.362369 ACGCAGCATGGTAGCTCCT 61.362 57.895 14.40 0.00 44.54 3.69
665 693 2.176273 CACGCAGCATGGTAGCTCC 61.176 63.158 14.40 0.00 44.54 4.70
666 694 2.817423 GCACGCAGCATGGTAGCTC 61.817 63.158 14.40 3.87 44.54 4.09
668 696 4.228097 CGCACGCAGCATGGTAGC 62.228 66.667 0.00 3.14 46.13 3.58
669 697 0.597377 TATCGCACGCAGCATGGTAG 60.597 55.000 0.00 0.00 46.13 3.18
670 698 0.874175 GTATCGCACGCAGCATGGTA 60.874 55.000 0.00 0.00 46.13 3.25
671 699 2.173669 GTATCGCACGCAGCATGGT 61.174 57.895 0.00 0.00 46.13 3.55
672 700 2.628106 GTATCGCACGCAGCATGG 59.372 61.111 0.00 0.00 46.13 3.66
673 701 2.243525 CGTATCGCACGCAGCATG 59.756 61.111 0.00 0.00 45.03 4.06
681 709 3.441163 TGATAAGGTTGACGTATCGCAC 58.559 45.455 0.00 0.00 41.61 5.34
682 710 3.786516 TGATAAGGTTGACGTATCGCA 57.213 42.857 0.00 0.00 41.61 5.10
683 711 3.861113 TGTTGATAAGGTTGACGTATCGC 59.139 43.478 0.00 0.00 41.61 4.58
684 712 5.337554 TCTGTTGATAAGGTTGACGTATCG 58.662 41.667 0.00 0.00 41.61 2.92
685 713 7.115095 GCTATCTGTTGATAAGGTTGACGTATC 59.885 40.741 0.00 0.00 39.89 2.24
686 714 6.924060 GCTATCTGTTGATAAGGTTGACGTAT 59.076 38.462 0.00 0.00 35.04 3.06
687 715 6.127563 TGCTATCTGTTGATAAGGTTGACGTA 60.128 38.462 0.00 0.00 35.04 3.57
688 716 5.109903 GCTATCTGTTGATAAGGTTGACGT 58.890 41.667 0.00 0.00 35.04 4.34
689 717 5.109210 TGCTATCTGTTGATAAGGTTGACG 58.891 41.667 0.00 0.00 35.04 4.35
690 718 6.985188 TTGCTATCTGTTGATAAGGTTGAC 57.015 37.500 0.00 0.00 35.04 3.18
691 719 8.704668 TCTATTGCTATCTGTTGATAAGGTTGA 58.295 33.333 0.00 0.00 35.04 3.18
692 720 8.893219 TCTATTGCTATCTGTTGATAAGGTTG 57.107 34.615 0.00 0.00 35.04 3.77
694 722 9.499479 CATTCTATTGCTATCTGTTGATAAGGT 57.501 33.333 0.00 0.00 35.04 3.50
695 723 9.499479 ACATTCTATTGCTATCTGTTGATAAGG 57.501 33.333 0.00 0.00 35.04 2.69
722 750 8.966868 CACCCATAACACACCTTAGATTTTATT 58.033 33.333 0.00 0.00 0.00 1.40
723 751 8.113462 ACACCCATAACACACCTTAGATTTTAT 58.887 33.333 0.00 0.00 0.00 1.40
724 752 7.463431 ACACCCATAACACACCTTAGATTTTA 58.537 34.615 0.00 0.00 0.00 1.52
725 753 6.311735 ACACCCATAACACACCTTAGATTTT 58.688 36.000 0.00 0.00 0.00 1.82
726 754 5.887754 ACACCCATAACACACCTTAGATTT 58.112 37.500 0.00 0.00 0.00 2.17
727 755 5.514500 ACACCCATAACACACCTTAGATT 57.486 39.130 0.00 0.00 0.00 2.40
728 756 5.514500 AACACCCATAACACACCTTAGAT 57.486 39.130 0.00 0.00 0.00 1.98
729 757 4.986054 AACACCCATAACACACCTTAGA 57.014 40.909 0.00 0.00 0.00 2.10
730 758 5.553123 TGTAACACCCATAACACACCTTAG 58.447 41.667 0.00 0.00 0.00 2.18
731 759 5.563876 TGTAACACCCATAACACACCTTA 57.436 39.130 0.00 0.00 0.00 2.69
732 760 4.440826 TGTAACACCCATAACACACCTT 57.559 40.909 0.00 0.00 0.00 3.50
733 761 4.650972 ATGTAACACCCATAACACACCT 57.349 40.909 0.00 0.00 0.00 4.00
734 762 6.376018 ACATTATGTAACACCCATAACACACC 59.624 38.462 0.00 0.00 37.54 4.16
735 763 7.385778 ACATTATGTAACACCCATAACACAC 57.614 36.000 0.00 0.00 37.54 3.82
736 764 9.516546 TTAACATTATGTAACACCCATAACACA 57.483 29.630 0.00 0.00 37.54 3.72
737 765 9.997482 CTTAACATTATGTAACACCCATAACAC 57.003 33.333 0.00 0.00 37.54 3.32
738 766 8.679100 GCTTAACATTATGTAACACCCATAACA 58.321 33.333 0.00 0.00 37.54 2.41
739 767 7.853929 CGCTTAACATTATGTAACACCCATAAC 59.146 37.037 0.00 0.00 37.54 1.89
740 768 7.553402 ACGCTTAACATTATGTAACACCCATAA 59.447 33.333 0.00 0.00 38.68 1.90
741 769 7.011576 CACGCTTAACATTATGTAACACCCATA 59.988 37.037 0.00 0.00 0.00 2.74
742 770 5.883673 ACGCTTAACATTATGTAACACCCAT 59.116 36.000 0.00 0.00 0.00 4.00
743 771 5.122554 CACGCTTAACATTATGTAACACCCA 59.877 40.000 0.00 0.00 0.00 4.51
744 772 5.565695 CACGCTTAACATTATGTAACACCC 58.434 41.667 0.00 0.00 0.00 4.61
745 773 5.025826 GCACGCTTAACATTATGTAACACC 58.974 41.667 0.00 0.00 0.00 4.16
746 774 5.864986 AGCACGCTTAACATTATGTAACAC 58.135 37.500 0.00 0.00 0.00 3.32
747 775 6.310960 CAAGCACGCTTAACATTATGTAACA 58.689 36.000 3.53 0.00 34.50 2.41
748 776 5.737290 CCAAGCACGCTTAACATTATGTAAC 59.263 40.000 3.53 0.00 34.50 2.50
749 777 5.413213 ACCAAGCACGCTTAACATTATGTAA 59.587 36.000 3.53 0.00 34.50 2.41
750 778 4.938832 ACCAAGCACGCTTAACATTATGTA 59.061 37.500 3.53 0.00 34.50 2.29
751 779 3.756434 ACCAAGCACGCTTAACATTATGT 59.244 39.130 3.53 0.00 34.50 2.29
752 780 4.355543 ACCAAGCACGCTTAACATTATG 57.644 40.909 3.53 0.00 34.50 1.90
753 781 5.385509 AAACCAAGCACGCTTAACATTAT 57.614 34.783 3.53 0.00 34.50 1.28
754 782 4.839668 AAACCAAGCACGCTTAACATTA 57.160 36.364 3.53 0.00 34.50 1.90
755 783 3.726291 AAACCAAGCACGCTTAACATT 57.274 38.095 3.53 0.00 34.50 2.71
756 784 3.190535 CCTAAACCAAGCACGCTTAACAT 59.809 43.478 3.53 0.00 34.50 2.71
822 854 9.494271 GCCATAGATTATCTTACATTCTGTTCA 57.506 33.333 0.00 0.00 0.00 3.18
906 946 2.335316 AAAGTAGCACGGTGGTCAAA 57.665 45.000 17.07 0.00 0.00 2.69
911 951 3.564511 CAATTCAAAAGTAGCACGGTGG 58.435 45.455 10.60 0.00 0.00 4.61
947 987 1.600636 GCAGCAGGGTACAACAGCA 60.601 57.895 0.00 0.00 0.00 4.41
948 988 2.680913 CGCAGCAGGGTACAACAGC 61.681 63.158 0.00 0.00 0.00 4.40
949 989 2.034879 CCGCAGCAGGGTACAACAG 61.035 63.158 0.00 0.00 0.00 3.16
950 990 2.031919 CCGCAGCAGGGTACAACA 59.968 61.111 0.00 0.00 0.00 3.33
951 991 1.599797 AACCGCAGCAGGGTACAAC 60.600 57.895 7.98 0.00 36.57 3.32
953 993 2.031919 CAACCGCAGCAGGGTACA 59.968 61.111 7.98 0.00 36.57 2.90
954 994 2.746277 CCAACCGCAGCAGGGTAC 60.746 66.667 7.98 0.00 36.57 3.34
955 995 1.481901 TAACCAACCGCAGCAGGGTA 61.482 55.000 7.98 0.00 36.57 3.69
956 996 2.824880 TAACCAACCGCAGCAGGGT 61.825 57.895 7.98 0.00 40.20 4.34
1391 1434 7.547227 ACAATATGGATGCCAAGTTTTCTTAC 58.453 34.615 0.00 0.00 38.17 2.34
1418 1461 3.567478 AAATACAGGGCCAGACTGATC 57.433 47.619 13.73 0.00 39.24 2.92
1445 1488 8.257306 TCCCAAATAACAAAAATGGATAGCTTC 58.743 33.333 0.00 0.00 32.82 3.86
1446 1489 8.144862 TCCCAAATAACAAAAATGGATAGCTT 57.855 30.769 0.00 0.00 32.82 3.74
1447 1490 7.732222 TCCCAAATAACAAAAATGGATAGCT 57.268 32.000 0.00 0.00 32.82 3.32
1487 1530 6.650120 AGAAAGTGAACCAAGTGTTAAGAGA 58.350 36.000 0.00 0.00 37.29 3.10
1490 1533 6.927294 AGAGAAAGTGAACCAAGTGTTAAG 57.073 37.500 0.00 0.00 37.29 1.85
1506 1552 1.580845 CCGGGCTGTGCAAGAGAAAG 61.581 60.000 0.00 0.00 0.00 2.62
1513 1559 2.268920 GAGATCCGGGCTGTGCAA 59.731 61.111 0.00 0.00 0.00 4.08
1516 1562 1.459455 ATCTCGAGATCCGGGCTGTG 61.459 60.000 22.32 0.00 39.00 3.66
1517 1563 1.152652 ATCTCGAGATCCGGGCTGT 60.153 57.895 22.32 0.00 39.00 4.40
1523 1569 3.428725 GGATCAATCCATCTCGAGATCCG 60.429 52.174 25.00 17.27 46.38 4.18
1687 1734 8.761575 ATGCATTTCAATACTTCAAAATCGTT 57.238 26.923 0.00 0.00 0.00 3.85
1750 1797 5.437060 GCATCCCTACAATTTTACTGAGGA 58.563 41.667 0.00 0.00 0.00 3.71
1900 1952 3.411446 TGACAGTAGGAACTTGCCATTG 58.589 45.455 0.00 0.00 41.75 2.82
2028 2080 1.478654 GGGAAGACTGTTGCCAAAGGA 60.479 52.381 0.00 0.00 0.00 3.36
2035 2087 1.613520 GGGGTAAGGGAAGACTGTTGC 60.614 57.143 0.00 0.00 0.00 4.17
2124 2176 1.470098 CCGAGGAAATTTGACCTGCAG 59.530 52.381 6.78 6.78 36.57 4.41
2262 2314 1.522569 GATCGGGTAGCTGCCAGTT 59.477 57.895 23.21 13.64 0.00 3.16
2277 2329 3.637432 CTCATAGTTCACCTGAGCGATC 58.363 50.000 0.00 0.00 30.91 3.69
2541 2605 2.284258 AGCGGGCTCTCCTTGTCT 60.284 61.111 0.00 0.00 0.00 3.41
2580 2644 4.694233 AGCTGCTCGTGCCACCTG 62.694 66.667 7.05 0.00 38.71 4.00
2634 2698 2.027625 GTTCTTGACCGAGGCCACG 61.028 63.158 16.33 16.33 0.00 4.94
2949 3022 8.289618 TGTTGCACTGAGAATCTGTTTATTTAC 58.710 33.333 0.00 0.00 45.49 2.01
2981 3054 2.223294 GGAGAGACGGTACTCAATGACG 60.223 54.545 13.90 0.00 39.14 4.35
2988 3061 0.459237 TCGACGGAGAGACGGTACTC 60.459 60.000 0.00 6.35 38.48 2.59
2992 3065 2.661399 TCTCGACGGAGAGACGGT 59.339 61.111 7.84 0.00 44.28 4.83
3032 3105 2.419667 TCGTTCGTTCCCTTCATTTCC 58.580 47.619 0.00 0.00 0.00 3.13
3033 3106 4.403453 CATTCGTTCGTTCCCTTCATTTC 58.597 43.478 0.00 0.00 0.00 2.17
3035 3108 2.161609 GCATTCGTTCGTTCCCTTCATT 59.838 45.455 0.00 0.00 0.00 2.57
3036 3109 1.737793 GCATTCGTTCGTTCCCTTCAT 59.262 47.619 0.00 0.00 0.00 2.57
3037 3110 1.153353 GCATTCGTTCGTTCCCTTCA 58.847 50.000 0.00 0.00 0.00 3.02
3038 3111 1.153353 TGCATTCGTTCGTTCCCTTC 58.847 50.000 0.00 0.00 0.00 3.46
3039 3112 1.737793 GATGCATTCGTTCGTTCCCTT 59.262 47.619 0.00 0.00 0.00 3.95
3040 3113 1.338674 TGATGCATTCGTTCGTTCCCT 60.339 47.619 0.00 0.00 0.00 4.20
3041 3114 1.083489 TGATGCATTCGTTCGTTCCC 58.917 50.000 0.00 0.00 0.00 3.97
3042 3115 2.159627 ACTTGATGCATTCGTTCGTTCC 59.840 45.455 0.00 0.00 0.00 3.62
3045 3118 2.880822 CACTTGATGCATTCGTTCGT 57.119 45.000 0.00 0.00 0.00 3.85
3071 3144 6.607735 ACCAACAATTTGCAGAGAATTTTG 57.392 33.333 0.00 0.00 0.00 2.44
3075 3148 5.069516 ACTGAACCAACAATTTGCAGAGAAT 59.930 36.000 0.00 0.00 29.62 2.40
3139 3221 4.724798 ACCTATTGATACCAGCTTTACCCA 59.275 41.667 0.00 0.00 0.00 4.51
3148 3230 5.011982 TCTCCCCTACCTATTGATACCAG 57.988 47.826 0.00 0.00 0.00 4.00
3151 3233 6.670027 ACATCATCTCCCCTACCTATTGATAC 59.330 42.308 0.00 0.00 0.00 2.24
3274 3362 1.152943 CAGGCAGAGGCAGCATCAT 60.153 57.895 10.23 0.00 43.71 2.45
3320 3411 4.155462 TCACTAGCACTACCTTGTAACTCG 59.845 45.833 0.00 0.00 0.00 4.18
3326 3417 4.040461 ACAACATCACTAGCACTACCTTGT 59.960 41.667 0.00 0.00 0.00 3.16
3341 3433 1.955778 CCTTGCAAGACCACAACATCA 59.044 47.619 28.05 0.00 0.00 3.07
3432 3533 3.477899 GCATTCAGCAGTAACTTCCAC 57.522 47.619 0.00 0.00 44.79 4.02
3490 3591 3.797865 GCAAGCAAGCAAATCAACTGACT 60.798 43.478 0.00 0.00 0.00 3.41
3513 3615 4.498850 CGACTATTAGCAGATGCAGTGTCT 60.499 45.833 7.68 0.00 45.16 3.41
3514 3616 3.733224 CGACTATTAGCAGATGCAGTGTC 59.267 47.826 7.68 6.91 45.16 3.67
3515 3617 3.491619 CCGACTATTAGCAGATGCAGTGT 60.492 47.826 7.68 0.00 45.16 3.55
3550 3660 9.762933 TGCAGAATTTTTCTTTTAAGCTAATGT 57.237 25.926 0.00 0.00 38.11 2.71
3571 4072 0.540133 TGTACCTGTACCGGTGCAGA 60.540 55.000 42.96 27.44 43.38 4.26
3574 4075 0.248289 ACATGTACCTGTACCGGTGC 59.752 55.000 19.93 18.21 39.74 5.01
3601 4696 1.669115 CTGCAGCTGTACGTGCCTT 60.669 57.895 16.64 0.00 39.04 4.35
3639 4734 1.130054 AAGGCAGTGCAGAGGAGGAA 61.130 55.000 18.61 0.00 0.00 3.36
3642 4737 1.376942 CCAAGGCAGTGCAGAGGAG 60.377 63.158 18.61 0.00 0.00 3.69
3689 4784 0.107268 AAGCCAAAGCCAAAGCCAAG 59.893 50.000 0.00 0.00 41.25 3.61
3705 4800 9.135843 ACGATTAGTTTTAAATTAAGCCAAAGC 57.864 29.630 3.36 0.00 40.32 3.51
3724 4819 5.741040 GTCGAGGGTTTTGTAGTACGATTAG 59.259 44.000 0.00 0.00 0.00 1.73
3733 4828 2.413837 CCAGTGTCGAGGGTTTTGTAG 58.586 52.381 0.00 0.00 0.00 2.74
3770 4865 7.445402 GCAACACCATACATATACATTCCTCTT 59.555 37.037 0.00 0.00 0.00 2.85
3772 4867 6.128553 CGCAACACCATACATATACATTCCTC 60.129 42.308 0.00 0.00 0.00 3.71
3782 4877 2.623535 GACCACGCAACACCATACATA 58.376 47.619 0.00 0.00 0.00 2.29
3783 4878 1.448985 GACCACGCAACACCATACAT 58.551 50.000 0.00 0.00 0.00 2.29
3784 4879 0.604243 GGACCACGCAACACCATACA 60.604 55.000 0.00 0.00 0.00 2.29
3785 4880 1.632046 CGGACCACGCAACACCATAC 61.632 60.000 0.00 0.00 34.82 2.39
3786 4881 1.374885 CGGACCACGCAACACCATA 60.375 57.895 0.00 0.00 34.82 2.74
3787 4882 2.668212 CGGACCACGCAACACCAT 60.668 61.111 0.00 0.00 34.82 3.55
3885 4983 2.016318 CCAGACAACTCAACAGTGCAA 58.984 47.619 0.00 0.00 31.06 4.08
3907 5005 2.892374 CGTGTGCATATTGTGGAGAGA 58.108 47.619 0.00 0.00 0.00 3.10
3909 5007 1.368641 GCGTGTGCATATTGTGGAGA 58.631 50.000 0.00 0.00 42.15 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.