Multiple sequence alignment - TraesCS2D01G584500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G584500 chr2D 100.000 2216 0 0 1 2216 643854896 643857111 0.000000e+00 4093
1 TraesCS2D01G584500 chr2D 99.075 1081 10 0 1136 2216 359632206 359631126 0.000000e+00 1941
2 TraesCS2D01G584500 chr2D 81.301 123 23 0 681 803 643855481 643855603 1.400000e-17 100
3 TraesCS2D01G584500 chr2D 81.301 123 23 0 586 708 643855576 643855698 1.400000e-17 100
4 TraesCS2D01G584500 chr5D 99.237 1311 10 0 906 2216 483805318 483804008 0.000000e+00 2366
5 TraesCS2D01G584500 chr5D 98.552 1312 18 1 906 2216 6233790 6232479 0.000000e+00 2316
6 TraesCS2D01G584500 chr1D 99.011 1314 10 2 906 2216 254479436 254480749 0.000000e+00 2351
7 TraesCS2D01G584500 chr1D 97.445 1174 30 0 906 2079 180353288 180352115 0.000000e+00 2002
8 TraesCS2D01G584500 chr3B 98.093 1311 25 0 906 2216 201495461 201496771 0.000000e+00 2283
9 TraesCS2D01G584500 chr3B 89.320 412 43 1 493 903 13410332 13410743 1.170000e-142 516
10 TraesCS2D01G584500 chr3B 91.304 207 12 4 239 444 13410139 13410340 6.030000e-71 278
11 TraesCS2D01G584500 chr3B 84.252 127 20 0 681 807 13410425 13410551 8.310000e-25 124
12 TraesCS2D01G584500 chr2B 97.864 1311 20 1 906 2216 474937317 474938619 0.000000e+00 2259
13 TraesCS2D01G584500 chr2B 91.971 137 7 3 1 135 793229281 793229147 2.900000e-44 189
14 TraesCS2D01G584500 chr2B 94.286 105 6 0 135 239 793184430 793184326 6.330000e-36 161
15 TraesCS2D01G584500 chr2B 87.395 119 11 4 239 357 761974206 761974092 1.380000e-27 134
16 TraesCS2D01G584500 chr6D 96.186 1311 45 4 906 2216 210722892 210721587 0.000000e+00 2139
17 TraesCS2D01G584500 chr7A 94.927 1301 63 3 910 2210 352294350 352293053 0.000000e+00 2034
18 TraesCS2D01G584500 chrUn 99.340 1060 6 1 906 1965 407031854 407032912 0.000000e+00 1917
19 TraesCS2D01G584500 chr2A 96.624 237 7 1 1 236 768983725 768983961 2.060000e-105 392
20 TraesCS2D01G584500 chr7B 88.991 218 18 4 228 444 346666247 346666459 4.690000e-67 265
21 TraesCS2D01G584500 chr7B 80.738 244 37 8 230 467 559136267 559136506 4.860000e-42 182
22 TraesCS2D01G584500 chr5A 98.485 66 1 0 2151 2216 137031288 137031353 1.390000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G584500 chr2D 643854896 643857111 2215 False 1431 4093 87.534 1 2216 3 chr2D.!!$F1 2215
1 TraesCS2D01G584500 chr2D 359631126 359632206 1080 True 1941 1941 99.075 1136 2216 1 chr2D.!!$R1 1080
2 TraesCS2D01G584500 chr5D 483804008 483805318 1310 True 2366 2366 99.237 906 2216 1 chr5D.!!$R2 1310
3 TraesCS2D01G584500 chr5D 6232479 6233790 1311 True 2316 2316 98.552 906 2216 1 chr5D.!!$R1 1310
4 TraesCS2D01G584500 chr1D 254479436 254480749 1313 False 2351 2351 99.011 906 2216 1 chr1D.!!$F1 1310
5 TraesCS2D01G584500 chr1D 180352115 180353288 1173 True 2002 2002 97.445 906 2079 1 chr1D.!!$R1 1173
6 TraesCS2D01G584500 chr3B 201495461 201496771 1310 False 2283 2283 98.093 906 2216 1 chr3B.!!$F1 1310
7 TraesCS2D01G584500 chr3B 13410139 13410743 604 False 306 516 88.292 239 903 3 chr3B.!!$F2 664
8 TraesCS2D01G584500 chr2B 474937317 474938619 1302 False 2259 2259 97.864 906 2216 1 chr2B.!!$F1 1310
9 TraesCS2D01G584500 chr6D 210721587 210722892 1305 True 2139 2139 96.186 906 2216 1 chr6D.!!$R1 1310
10 TraesCS2D01G584500 chr7A 352293053 352294350 1297 True 2034 2034 94.927 910 2210 1 chr7A.!!$R1 1300
11 TraesCS2D01G584500 chrUn 407031854 407032912 1058 False 1917 1917 99.340 906 1965 1 chrUn.!!$F1 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 691 0.037605 GTGTCCCGTCACCACCTTAG 60.038 60.0 0.0 0.0 32.81 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 1945 5.80347 GCCCTAACTATGGCGGAATATTTCT 60.803 44.0 0.0 0.0 38.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.843422 TCCTCTTCCAGCCAAAATTTGA 58.157 40.909 7.37 0.00 0.00 2.69
22 23 4.419282 TCCTCTTCCAGCCAAAATTTGAT 58.581 39.130 7.37 0.00 0.00 2.57
23 24 4.463891 TCCTCTTCCAGCCAAAATTTGATC 59.536 41.667 7.37 0.00 0.00 2.92
24 25 4.465305 CCTCTTCCAGCCAAAATTTGATCT 59.535 41.667 7.37 1.23 0.00 2.75
25 26 5.046807 CCTCTTCCAGCCAAAATTTGATCTT 60.047 40.000 7.37 0.00 0.00 2.40
26 27 5.786311 TCTTCCAGCCAAAATTTGATCTTG 58.214 37.500 7.37 0.83 0.00 3.02
27 28 5.305128 TCTTCCAGCCAAAATTTGATCTTGT 59.695 36.000 7.37 0.00 0.00 3.16
28 29 5.549742 TCCAGCCAAAATTTGATCTTGTT 57.450 34.783 7.37 0.00 0.00 2.83
29 30 6.662865 TCCAGCCAAAATTTGATCTTGTTA 57.337 33.333 7.37 0.00 0.00 2.41
30 31 7.243604 TCCAGCCAAAATTTGATCTTGTTAT 57.756 32.000 7.37 0.00 0.00 1.89
31 32 8.359875 TCCAGCCAAAATTTGATCTTGTTATA 57.640 30.769 7.37 0.00 0.00 0.98
32 33 8.250332 TCCAGCCAAAATTTGATCTTGTTATAC 58.750 33.333 7.37 0.00 0.00 1.47
33 34 7.492344 CCAGCCAAAATTTGATCTTGTTATACC 59.508 37.037 7.37 0.00 0.00 2.73
34 35 8.034215 CAGCCAAAATTTGATCTTGTTATACCA 58.966 33.333 7.37 0.00 0.00 3.25
35 36 8.761689 AGCCAAAATTTGATCTTGTTATACCAT 58.238 29.630 7.37 0.00 0.00 3.55
36 37 9.034544 GCCAAAATTTGATCTTGTTATACCATC 57.965 33.333 7.37 0.00 0.00 3.51
76 77 7.827819 AACAAACTTAAGAAAGAAAAGCCAC 57.172 32.000 10.09 0.00 36.50 5.01
77 78 6.338146 ACAAACTTAAGAAAGAAAAGCCACC 58.662 36.000 10.09 0.00 36.50 4.61
78 79 6.154534 ACAAACTTAAGAAAGAAAAGCCACCT 59.845 34.615 10.09 0.00 36.50 4.00
79 80 5.774498 ACTTAAGAAAGAAAAGCCACCTG 57.226 39.130 10.09 0.00 36.50 4.00
80 81 5.201243 ACTTAAGAAAGAAAAGCCACCTGT 58.799 37.500 10.09 0.00 36.50 4.00
81 82 5.656859 ACTTAAGAAAGAAAAGCCACCTGTT 59.343 36.000 10.09 0.00 36.50 3.16
82 83 6.154534 ACTTAAGAAAGAAAAGCCACCTGTTT 59.845 34.615 10.09 0.00 36.50 2.83
83 84 5.420725 AAGAAAGAAAAGCCACCTGTTTT 57.579 34.783 0.00 0.00 0.00 2.43
84 85 5.420725 AGAAAGAAAAGCCACCTGTTTTT 57.579 34.783 0.00 0.00 0.00 1.94
85 86 6.538945 AGAAAGAAAAGCCACCTGTTTTTA 57.461 33.333 0.00 0.00 0.00 1.52
86 87 7.124573 AGAAAGAAAAGCCACCTGTTTTTAT 57.875 32.000 0.00 0.00 0.00 1.40
87 88 6.986231 AGAAAGAAAAGCCACCTGTTTTTATG 59.014 34.615 0.00 0.00 0.00 1.90
88 89 4.631131 AGAAAAGCCACCTGTTTTTATGC 58.369 39.130 0.00 0.00 0.00 3.14
89 90 4.344968 AGAAAAGCCACCTGTTTTTATGCT 59.655 37.500 0.00 0.00 0.00 3.79
90 91 3.665745 AAGCCACCTGTTTTTATGCTG 57.334 42.857 0.00 0.00 0.00 4.41
91 92 2.597455 AGCCACCTGTTTTTATGCTGT 58.403 42.857 0.00 0.00 0.00 4.40
92 93 2.558359 AGCCACCTGTTTTTATGCTGTC 59.442 45.455 0.00 0.00 0.00 3.51
93 94 2.558359 GCCACCTGTTTTTATGCTGTCT 59.442 45.455 0.00 0.00 0.00 3.41
94 95 3.756434 GCCACCTGTTTTTATGCTGTCTA 59.244 43.478 0.00 0.00 0.00 2.59
95 96 4.399303 GCCACCTGTTTTTATGCTGTCTAT 59.601 41.667 0.00 0.00 0.00 1.98
96 97 5.588648 GCCACCTGTTTTTATGCTGTCTATA 59.411 40.000 0.00 0.00 0.00 1.31
97 98 6.263168 GCCACCTGTTTTTATGCTGTCTATAT 59.737 38.462 0.00 0.00 0.00 0.86
98 99 7.642669 CCACCTGTTTTTATGCTGTCTATATG 58.357 38.462 0.00 0.00 0.00 1.78
99 100 7.283127 CCACCTGTTTTTATGCTGTCTATATGT 59.717 37.037 0.00 0.00 0.00 2.29
100 101 8.677300 CACCTGTTTTTATGCTGTCTATATGTT 58.323 33.333 0.00 0.00 0.00 2.71
101 102 9.243105 ACCTGTTTTTATGCTGTCTATATGTTT 57.757 29.630 0.00 0.00 0.00 2.83
108 109 8.757164 TTATGCTGTCTATATGTTTACGATGG 57.243 34.615 0.00 0.00 0.00 3.51
109 110 6.156748 TGCTGTCTATATGTTTACGATGGT 57.843 37.500 0.00 0.00 0.00 3.55
110 111 5.983118 TGCTGTCTATATGTTTACGATGGTG 59.017 40.000 0.00 0.00 0.00 4.17
111 112 5.405571 GCTGTCTATATGTTTACGATGGTGG 59.594 44.000 0.00 0.00 0.00 4.61
112 113 5.849510 TGTCTATATGTTTACGATGGTGGG 58.150 41.667 0.00 0.00 0.00 4.61
113 114 4.689345 GTCTATATGTTTACGATGGTGGGC 59.311 45.833 0.00 0.00 0.00 5.36
114 115 2.335316 TATGTTTACGATGGTGGGCC 57.665 50.000 0.00 0.00 0.00 5.80
126 127 4.196778 TGGGCCAGCGTTCCACAA 62.197 61.111 0.00 0.00 0.00 3.33
127 128 2.676471 GGGCCAGCGTTCCACAAT 60.676 61.111 4.39 0.00 0.00 2.71
128 129 2.275380 GGGCCAGCGTTCCACAATT 61.275 57.895 4.39 0.00 0.00 2.32
129 130 1.080569 GGCCAGCGTTCCACAATTG 60.081 57.895 3.24 3.24 0.00 2.32
130 131 1.523154 GGCCAGCGTTCCACAATTGA 61.523 55.000 13.59 0.00 0.00 2.57
131 132 0.313672 GCCAGCGTTCCACAATTGAA 59.686 50.000 13.59 0.00 0.00 2.69
132 133 1.067635 GCCAGCGTTCCACAATTGAAT 60.068 47.619 13.59 0.00 0.00 2.57
133 134 2.163412 GCCAGCGTTCCACAATTGAATA 59.837 45.455 13.59 0.00 0.00 1.75
134 135 3.366883 GCCAGCGTTCCACAATTGAATAA 60.367 43.478 13.59 0.00 0.00 1.40
135 136 4.165779 CCAGCGTTCCACAATTGAATAAC 58.834 43.478 13.59 11.16 0.00 1.89
136 137 4.320861 CCAGCGTTCCACAATTGAATAACA 60.321 41.667 13.59 0.00 0.00 2.41
137 138 4.853196 CAGCGTTCCACAATTGAATAACAG 59.147 41.667 13.59 9.65 0.00 3.16
138 139 3.608073 GCGTTCCACAATTGAATAACAGC 59.392 43.478 13.59 14.38 0.00 4.40
139 140 4.793071 CGTTCCACAATTGAATAACAGCA 58.207 39.130 13.59 0.00 0.00 4.41
140 141 5.401550 CGTTCCACAATTGAATAACAGCAT 58.598 37.500 13.59 0.00 0.00 3.79
141 142 5.512788 CGTTCCACAATTGAATAACAGCATC 59.487 40.000 13.59 0.00 0.00 3.91
142 143 6.623549 CGTTCCACAATTGAATAACAGCATCT 60.624 38.462 13.59 0.00 0.00 2.90
143 144 6.441093 TCCACAATTGAATAACAGCATCTC 57.559 37.500 13.59 0.00 0.00 2.75
144 145 5.357878 TCCACAATTGAATAACAGCATCTCC 59.642 40.000 13.59 0.00 0.00 3.71
145 146 5.125900 CCACAATTGAATAACAGCATCTCCA 59.874 40.000 13.59 0.00 0.00 3.86
146 147 6.350361 CCACAATTGAATAACAGCATCTCCAA 60.350 38.462 13.59 0.00 0.00 3.53
147 148 7.262772 CACAATTGAATAACAGCATCTCCAAT 58.737 34.615 13.59 0.00 0.00 3.16
148 149 7.762615 CACAATTGAATAACAGCATCTCCAATT 59.237 33.333 13.59 0.00 34.51 2.32
149 150 8.126871 CAATTGAATAACAGCATCTCCAATTG 57.873 34.615 0.00 0.00 41.31 2.32
150 151 7.649533 ATTGAATAACAGCATCTCCAATTGA 57.350 32.000 7.12 0.00 0.00 2.57
151 152 7.649533 TTGAATAACAGCATCTCCAATTGAT 57.350 32.000 7.12 0.00 0.00 2.57
152 153 7.034685 TGAATAACAGCATCTCCAATTGATG 57.965 36.000 7.12 4.11 42.86 3.07
153 154 6.829811 TGAATAACAGCATCTCCAATTGATGA 59.170 34.615 7.12 4.93 42.68 2.92
154 155 7.504574 TGAATAACAGCATCTCCAATTGATGAT 59.495 33.333 7.12 7.13 42.68 2.45
160 161 5.966742 CATCTCCAATTGATGATGCAGAT 57.033 39.130 19.84 8.19 42.68 2.90
161 162 5.703876 CATCTCCAATTGATGATGCAGATG 58.296 41.667 19.84 13.76 42.68 2.90
162 163 4.788679 TCTCCAATTGATGATGCAGATGT 58.211 39.130 7.12 0.00 0.00 3.06
163 164 5.932455 TCTCCAATTGATGATGCAGATGTA 58.068 37.500 7.12 0.00 0.00 2.29
164 165 6.540083 TCTCCAATTGATGATGCAGATGTAT 58.460 36.000 7.12 0.00 0.00 2.29
165 166 7.682628 TCTCCAATTGATGATGCAGATGTATA 58.317 34.615 7.12 0.00 0.00 1.47
166 167 8.158789 TCTCCAATTGATGATGCAGATGTATAA 58.841 33.333 7.12 0.00 0.00 0.98
167 168 8.694581 TCCAATTGATGATGCAGATGTATAAA 57.305 30.769 7.12 0.00 0.00 1.40
168 169 9.304335 TCCAATTGATGATGCAGATGTATAAAT 57.696 29.630 7.12 0.00 0.00 1.40
169 170 9.923143 CCAATTGATGATGCAGATGTATAAATT 57.077 29.630 7.12 0.00 0.00 1.82
212 213 4.688770 AAAAACGCCCCTCCAACA 57.311 50.000 0.00 0.00 0.00 3.33
213 214 2.903404 AAAAACGCCCCTCCAACAA 58.097 47.368 0.00 0.00 0.00 2.83
214 215 1.196012 AAAAACGCCCCTCCAACAAA 58.804 45.000 0.00 0.00 0.00 2.83
215 216 1.419381 AAAACGCCCCTCCAACAAAT 58.581 45.000 0.00 0.00 0.00 2.32
216 217 0.678950 AAACGCCCCTCCAACAAATG 59.321 50.000 0.00 0.00 0.00 2.32
217 218 0.178975 AACGCCCCTCCAACAAATGA 60.179 50.000 0.00 0.00 0.00 2.57
218 219 0.039618 ACGCCCCTCCAACAAATGAT 59.960 50.000 0.00 0.00 0.00 2.45
219 220 0.457035 CGCCCCTCCAACAAATGATG 59.543 55.000 0.00 0.00 0.00 3.07
220 221 1.560505 GCCCCTCCAACAAATGATGT 58.439 50.000 0.00 0.00 46.82 3.06
221 222 2.733956 GCCCCTCCAACAAATGATGTA 58.266 47.619 0.00 0.00 42.99 2.29
222 223 2.689983 GCCCCTCCAACAAATGATGTAG 59.310 50.000 0.00 0.00 42.99 2.74
223 224 3.624707 GCCCCTCCAACAAATGATGTAGA 60.625 47.826 0.00 0.00 42.99 2.59
224 225 4.796606 CCCCTCCAACAAATGATGTAGAT 58.203 43.478 0.00 0.00 42.99 1.98
225 226 4.581824 CCCCTCCAACAAATGATGTAGATG 59.418 45.833 0.00 0.00 42.99 2.90
226 227 5.195940 CCCTCCAACAAATGATGTAGATGT 58.804 41.667 0.00 0.00 42.99 3.06
227 228 6.356556 CCCTCCAACAAATGATGTAGATGTA 58.643 40.000 0.00 0.00 42.99 2.29
228 229 7.000472 CCCTCCAACAAATGATGTAGATGTAT 59.000 38.462 0.00 0.00 42.99 2.29
229 230 8.156820 CCCTCCAACAAATGATGTAGATGTATA 58.843 37.037 0.00 0.00 42.99 1.47
230 231 9.559732 CCTCCAACAAATGATGTAGATGTATAA 57.440 33.333 0.00 0.00 42.99 0.98
259 260 4.865761 TGCTACGCGTCATCCGGC 62.866 66.667 18.63 12.29 36.94 6.13
313 314 2.324330 TTGGATGAGGCGTTGCACG 61.324 57.895 4.61 4.61 45.88 5.34
330 331 3.521796 GGCTGCCCGATTTGCTCC 61.522 66.667 7.66 0.00 0.00 4.70
331 332 2.751436 GCTGCCCGATTTGCTCCA 60.751 61.111 0.00 0.00 0.00 3.86
332 333 2.342650 GCTGCCCGATTTGCTCCAA 61.343 57.895 0.00 0.00 0.00 3.53
333 334 1.805254 CTGCCCGATTTGCTCCAAG 59.195 57.895 0.00 0.00 0.00 3.61
334 335 0.962356 CTGCCCGATTTGCTCCAAGT 60.962 55.000 0.00 0.00 0.00 3.16
335 336 0.326595 TGCCCGATTTGCTCCAAGTA 59.673 50.000 0.00 0.00 0.00 2.24
336 337 1.017387 GCCCGATTTGCTCCAAGTAG 58.983 55.000 0.00 0.00 0.00 2.57
337 338 1.668419 CCCGATTTGCTCCAAGTAGG 58.332 55.000 0.00 0.00 39.47 3.18
338 339 1.209504 CCCGATTTGCTCCAAGTAGGA 59.790 52.381 2.15 0.00 46.75 2.94
350 351 3.428746 CAAGTAGGATCACGTGGAGAG 57.571 52.381 17.00 0.00 0.00 3.20
351 352 2.060050 AGTAGGATCACGTGGAGAGG 57.940 55.000 17.00 0.00 0.00 3.69
352 353 1.564818 AGTAGGATCACGTGGAGAGGA 59.435 52.381 17.00 0.00 0.00 3.71
353 354 2.025226 AGTAGGATCACGTGGAGAGGAA 60.025 50.000 17.00 0.00 0.00 3.36
354 355 1.187087 AGGATCACGTGGAGAGGAAC 58.813 55.000 17.00 0.00 0.00 3.62
355 356 0.895530 GGATCACGTGGAGAGGAACA 59.104 55.000 17.00 0.00 0.00 3.18
356 357 1.134965 GGATCACGTGGAGAGGAACAG 60.135 57.143 17.00 0.00 0.00 3.16
357 358 1.819288 GATCACGTGGAGAGGAACAGA 59.181 52.381 17.00 0.00 0.00 3.41
358 359 0.959553 TCACGTGGAGAGGAACAGAC 59.040 55.000 17.00 0.00 0.00 3.51
359 360 0.387367 CACGTGGAGAGGAACAGACG 60.387 60.000 7.95 0.00 0.00 4.18
360 361 1.444553 CGTGGAGAGGAACAGACGC 60.445 63.158 0.00 0.00 0.00 5.19
361 362 1.444553 GTGGAGAGGAACAGACGCG 60.445 63.158 3.53 3.53 0.00 6.01
362 363 2.182030 GGAGAGGAACAGACGCGG 59.818 66.667 12.47 0.00 0.00 6.46
363 364 2.507324 GAGAGGAACAGACGCGGC 60.507 66.667 12.47 7.86 0.00 6.53
364 365 2.992114 AGAGGAACAGACGCGGCT 60.992 61.111 9.84 9.84 0.00 5.52
365 366 2.811317 GAGGAACAGACGCGGCTG 60.811 66.667 39.33 39.33 41.63 4.85
368 369 3.345808 GAACAGACGCGGCTGCAA 61.346 61.111 40.72 0.00 42.97 4.08
369 370 2.892334 GAACAGACGCGGCTGCAAA 61.892 57.895 40.72 0.00 42.97 3.68
370 371 2.387125 GAACAGACGCGGCTGCAAAA 62.387 55.000 40.72 0.00 42.97 2.44
371 372 1.999071 AACAGACGCGGCTGCAAAAA 61.999 50.000 40.72 0.00 42.97 1.94
372 373 2.010817 CAGACGCGGCTGCAAAAAC 61.011 57.895 31.83 3.41 42.97 2.43
373 374 2.186826 AGACGCGGCTGCAAAAACT 61.187 52.632 17.28 5.76 42.97 2.66
374 375 2.010817 GACGCGGCTGCAAAAACTG 61.011 57.895 19.50 1.08 42.97 3.16
375 376 2.331098 CGCGGCTGCAAAAACTGA 59.669 55.556 19.50 0.00 42.97 3.41
376 377 1.299014 CGCGGCTGCAAAAACTGAA 60.299 52.632 19.50 0.00 42.97 3.02
377 378 1.539776 CGCGGCTGCAAAAACTGAAC 61.540 55.000 19.50 0.00 42.97 3.18
378 379 1.215014 GCGGCTGCAAAAACTGAACC 61.215 55.000 14.08 0.00 42.15 3.62
379 380 0.597377 CGGCTGCAAAAACTGAACCC 60.597 55.000 0.50 0.00 0.00 4.11
380 381 0.752658 GGCTGCAAAAACTGAACCCT 59.247 50.000 0.50 0.00 0.00 4.34
381 382 1.538849 GGCTGCAAAAACTGAACCCTG 60.539 52.381 0.50 0.00 0.00 4.45
382 383 1.136891 GCTGCAAAAACTGAACCCTGT 59.863 47.619 0.00 0.00 0.00 4.00
383 384 2.799562 GCTGCAAAAACTGAACCCTGTC 60.800 50.000 0.00 0.00 0.00 3.51
384 385 2.689983 CTGCAAAAACTGAACCCTGTCT 59.310 45.455 0.00 0.00 0.00 3.41
385 386 2.687935 TGCAAAAACTGAACCCTGTCTC 59.312 45.455 0.00 0.00 0.00 3.36
386 387 2.952310 GCAAAAACTGAACCCTGTCTCT 59.048 45.455 0.00 0.00 0.00 3.10
387 388 3.243201 GCAAAAACTGAACCCTGTCTCTG 60.243 47.826 0.00 0.00 0.00 3.35
388 389 2.262423 AAACTGAACCCTGTCTCTGC 57.738 50.000 0.00 0.00 0.00 4.26
389 390 1.428869 AACTGAACCCTGTCTCTGCT 58.571 50.000 0.00 0.00 0.00 4.24
390 391 0.683973 ACTGAACCCTGTCTCTGCTG 59.316 55.000 0.00 0.00 0.00 4.41
391 392 0.673022 CTGAACCCTGTCTCTGCTGC 60.673 60.000 0.00 0.00 0.00 5.25
392 393 1.739562 GAACCCTGTCTCTGCTGCG 60.740 63.158 0.00 0.00 0.00 5.18
393 394 3.890936 AACCCTGTCTCTGCTGCGC 62.891 63.158 0.00 0.00 0.00 6.09
394 395 4.383861 CCCTGTCTCTGCTGCGCA 62.384 66.667 10.98 10.98 36.92 6.09
408 409 2.906458 CGCAGCTCCTCCTCCATT 59.094 61.111 0.00 0.00 0.00 3.16
409 410 1.523258 CGCAGCTCCTCCTCCATTG 60.523 63.158 0.00 0.00 0.00 2.82
410 411 1.823041 GCAGCTCCTCCTCCATTGC 60.823 63.158 0.00 0.00 0.00 3.56
411 412 1.913722 CAGCTCCTCCTCCATTGCT 59.086 57.895 0.00 0.00 0.00 3.91
412 413 0.179051 CAGCTCCTCCTCCATTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
413 414 1.227497 GCTCCTCCTCCATTGCTCG 60.227 63.158 0.00 0.00 0.00 5.03
414 415 1.965754 GCTCCTCCTCCATTGCTCGT 61.966 60.000 0.00 0.00 0.00 4.18
415 416 0.103937 CTCCTCCTCCATTGCTCGTC 59.896 60.000 0.00 0.00 0.00 4.20
416 417 1.227089 CCTCCTCCATTGCTCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
417 418 1.880340 CTCCTCCATTGCTCGTCGC 60.880 63.158 0.00 0.00 39.77 5.19
418 419 2.892425 CCTCCATTGCTCGTCGCC 60.892 66.667 0.00 0.00 38.05 5.54
419 420 2.125552 CTCCATTGCTCGTCGCCA 60.126 61.111 0.00 0.00 38.05 5.69
420 421 1.741401 CTCCATTGCTCGTCGCCAA 60.741 57.895 1.58 1.58 38.05 4.52
421 422 1.970917 CTCCATTGCTCGTCGCCAAC 61.971 60.000 1.17 0.00 38.05 3.77
433 434 4.078516 GCCAACGGCCGTCCTACT 62.079 66.667 34.29 13.45 44.06 2.57
434 435 2.125673 CCAACGGCCGTCCTACTG 60.126 66.667 34.29 25.01 0.00 2.74
435 436 2.654877 CAACGGCCGTCCTACTGT 59.345 61.111 34.29 11.63 0.00 3.55
436 437 1.445582 CAACGGCCGTCCTACTGTC 60.446 63.158 34.29 0.00 0.00 3.51
437 438 1.605738 AACGGCCGTCCTACTGTCT 60.606 57.895 34.29 9.83 0.00 3.41
438 439 1.593296 AACGGCCGTCCTACTGTCTC 61.593 60.000 34.29 0.00 0.00 3.36
439 440 2.799371 GGCCGTCCTACTGTCTCG 59.201 66.667 0.00 0.00 0.00 4.04
440 441 2.045131 GGCCGTCCTACTGTCTCGT 61.045 63.158 0.00 0.00 0.00 4.18
441 442 1.136984 GCCGTCCTACTGTCTCGTG 59.863 63.158 0.00 0.00 0.00 4.35
442 443 1.136984 CCGTCCTACTGTCTCGTGC 59.863 63.158 0.00 0.00 0.00 5.34
443 444 1.583495 CCGTCCTACTGTCTCGTGCA 61.583 60.000 0.00 0.00 0.00 4.57
444 445 0.179187 CGTCCTACTGTCTCGTGCAG 60.179 60.000 0.00 7.17 39.67 4.41
445 446 0.456995 GTCCTACTGTCTCGTGCAGC 60.457 60.000 0.00 0.00 37.47 5.25
446 447 1.153745 CCTACTGTCTCGTGCAGCC 60.154 63.158 0.00 0.00 37.47 4.85
447 448 1.515088 CTACTGTCTCGTGCAGCCG 60.515 63.158 0.00 0.00 37.47 5.52
448 449 3.626680 TACTGTCTCGTGCAGCCGC 62.627 63.158 0.00 0.00 37.47 6.53
463 464 3.893763 CGCACCGGCCACAACAAA 61.894 61.111 0.00 0.00 36.38 2.83
464 465 2.279186 GCACCGGCCACAACAAAC 60.279 61.111 0.00 0.00 0.00 2.93
465 466 2.415426 CACCGGCCACAACAAACC 59.585 61.111 0.00 0.00 0.00 3.27
466 467 2.043852 ACCGGCCACAACAAACCA 60.044 55.556 0.00 0.00 0.00 3.67
467 468 2.415426 CCGGCCACAACAAACCAC 59.585 61.111 2.24 0.00 0.00 4.16
468 469 2.124693 CCGGCCACAACAAACCACT 61.125 57.895 2.24 0.00 0.00 4.00
469 470 1.358759 CGGCCACAACAAACCACTC 59.641 57.895 2.24 0.00 0.00 3.51
470 471 1.380403 CGGCCACAACAAACCACTCA 61.380 55.000 2.24 0.00 0.00 3.41
471 472 1.039856 GGCCACAACAAACCACTCAT 58.960 50.000 0.00 0.00 0.00 2.90
472 473 1.000274 GGCCACAACAAACCACTCATC 60.000 52.381 0.00 0.00 0.00 2.92
473 474 1.956477 GCCACAACAAACCACTCATCT 59.044 47.619 0.00 0.00 0.00 2.90
474 475 2.030805 GCCACAACAAACCACTCATCTC 60.031 50.000 0.00 0.00 0.00 2.75
475 476 2.554032 CCACAACAAACCACTCATCTCC 59.446 50.000 0.00 0.00 0.00 3.71
476 477 2.554032 CACAACAAACCACTCATCTCCC 59.446 50.000 0.00 0.00 0.00 4.30
477 478 2.162681 CAACAAACCACTCATCTCCCC 58.837 52.381 0.00 0.00 0.00 4.81
478 479 0.698818 ACAAACCACTCATCTCCCCC 59.301 55.000 0.00 0.00 0.00 5.40
479 480 0.698238 CAAACCACTCATCTCCCCCA 59.302 55.000 0.00 0.00 0.00 4.96
480 481 1.285962 CAAACCACTCATCTCCCCCAT 59.714 52.381 0.00 0.00 0.00 4.00
481 482 2.509548 CAAACCACTCATCTCCCCCATA 59.490 50.000 0.00 0.00 0.00 2.74
482 483 2.109229 ACCACTCATCTCCCCCATAG 57.891 55.000 0.00 0.00 0.00 2.23
483 484 0.689623 CCACTCATCTCCCCCATAGC 59.310 60.000 0.00 0.00 0.00 2.97
484 485 1.427809 CACTCATCTCCCCCATAGCA 58.572 55.000 0.00 0.00 0.00 3.49
485 486 1.770658 CACTCATCTCCCCCATAGCAA 59.229 52.381 0.00 0.00 0.00 3.91
486 487 2.173356 CACTCATCTCCCCCATAGCAAA 59.827 50.000 0.00 0.00 0.00 3.68
487 488 2.173569 ACTCATCTCCCCCATAGCAAAC 59.826 50.000 0.00 0.00 0.00 2.93
488 489 2.173356 CTCATCTCCCCCATAGCAAACA 59.827 50.000 0.00 0.00 0.00 2.83
489 490 2.173356 TCATCTCCCCCATAGCAAACAG 59.827 50.000 0.00 0.00 0.00 3.16
490 491 0.255890 TCTCCCCCATAGCAAACAGC 59.744 55.000 0.00 0.00 46.19 4.40
499 500 2.050077 GCAAACAGCCCTCGTTGC 60.050 61.111 0.00 0.00 37.23 4.17
500 501 2.844451 GCAAACAGCCCTCGTTGCA 61.844 57.895 2.53 0.00 37.23 4.08
501 502 1.008538 CAAACAGCCCTCGTTGCAC 60.009 57.895 0.00 0.00 0.00 4.57
502 503 1.152963 AAACAGCCCTCGTTGCACT 60.153 52.632 0.00 0.00 0.00 4.40
503 504 1.447317 AAACAGCCCTCGTTGCACTG 61.447 55.000 0.00 0.00 0.00 3.66
504 505 3.730761 CAGCCCTCGTTGCACTGC 61.731 66.667 0.00 0.00 0.00 4.40
505 506 4.254709 AGCCCTCGTTGCACTGCA 62.255 61.111 0.00 0.00 36.47 4.41
506 507 3.730761 GCCCTCGTTGCACTGCAG 61.731 66.667 13.48 13.48 40.61 4.41
507 508 3.730761 CCCTCGTTGCACTGCAGC 61.731 66.667 15.27 7.76 40.61 5.25
508 509 2.667536 CCTCGTTGCACTGCAGCT 60.668 61.111 15.27 0.00 40.61 4.24
509 510 2.256591 CCTCGTTGCACTGCAGCTT 61.257 57.895 15.27 0.00 40.61 3.74
510 511 1.206072 CTCGTTGCACTGCAGCTTC 59.794 57.895 15.27 3.39 40.61 3.86
511 512 1.226686 CTCGTTGCACTGCAGCTTCT 61.227 55.000 15.27 0.00 40.61 2.85
512 513 1.082300 CGTTGCACTGCAGCTTCTG 60.082 57.895 15.27 5.57 40.61 3.02
532 533 4.803426 GCCGTGCGAGGTCAGGAG 62.803 72.222 0.00 0.00 0.00 3.69
533 534 4.135153 CCGTGCGAGGTCAGGAGG 62.135 72.222 0.00 0.00 0.00 4.30
534 535 3.374402 CGTGCGAGGTCAGGAGGT 61.374 66.667 0.00 0.00 0.00 3.85
535 536 2.574399 GTGCGAGGTCAGGAGGTC 59.426 66.667 0.00 0.00 0.00 3.85
536 537 2.117423 TGCGAGGTCAGGAGGTCA 59.883 61.111 0.00 0.00 0.00 4.02
537 538 2.276116 TGCGAGGTCAGGAGGTCAC 61.276 63.158 0.00 0.00 0.00 3.67
538 539 2.878429 CGAGGTCAGGAGGTCACG 59.122 66.667 0.00 0.00 0.00 4.35
539 540 1.674651 CGAGGTCAGGAGGTCACGA 60.675 63.158 0.00 0.00 0.00 4.35
540 541 1.884444 GAGGTCAGGAGGTCACGAC 59.116 63.158 0.00 0.00 0.00 4.34
541 542 0.894184 GAGGTCAGGAGGTCACGACA 60.894 60.000 0.00 0.00 0.00 4.35
542 543 1.179814 AGGTCAGGAGGTCACGACAC 61.180 60.000 0.00 0.00 0.00 3.67
543 544 1.289380 GTCAGGAGGTCACGACACC 59.711 63.158 0.00 2.45 36.58 4.16
544 545 1.906824 TCAGGAGGTCACGACACCC 60.907 63.158 0.00 0.00 37.09 4.61
545 546 2.200370 AGGAGGTCACGACACCCA 59.800 61.111 0.00 0.00 37.09 4.51
546 547 1.908793 AGGAGGTCACGACACCCAG 60.909 63.158 0.00 0.00 37.09 4.45
547 548 2.657237 GAGGTCACGACACCCAGG 59.343 66.667 0.00 0.00 37.09 4.45
548 549 3.591254 GAGGTCACGACACCCAGGC 62.591 68.421 0.00 0.00 37.09 4.85
549 550 3.936203 GGTCACGACACCCAGGCA 61.936 66.667 0.00 0.00 0.00 4.75
550 551 2.347490 GTCACGACACCCAGGCAT 59.653 61.111 0.00 0.00 0.00 4.40
551 552 1.302511 GTCACGACACCCAGGCATT 60.303 57.895 0.00 0.00 0.00 3.56
552 553 1.302431 TCACGACACCCAGGCATTG 60.302 57.895 0.00 0.00 0.00 2.82
553 554 2.672996 ACGACACCCAGGCATTGC 60.673 61.111 0.00 0.00 0.00 3.56
554 555 2.672651 CGACACCCAGGCATTGCA 60.673 61.111 11.39 0.00 0.00 4.08
555 556 2.048023 CGACACCCAGGCATTGCAT 61.048 57.895 11.39 0.00 0.00 3.96
556 557 1.597797 CGACACCCAGGCATTGCATT 61.598 55.000 11.39 0.00 0.00 3.56
557 558 0.108520 GACACCCAGGCATTGCATTG 60.109 55.000 11.39 8.08 0.00 2.82
558 559 1.448893 CACCCAGGCATTGCATTGC 60.449 57.895 22.31 22.31 42.01 3.56
559 560 1.914263 ACCCAGGCATTGCATTGCA 60.914 52.632 28.93 7.38 44.59 4.08
560 561 1.153449 CCCAGGCATTGCATTGCAG 60.153 57.895 28.93 21.38 44.59 4.41
561 562 1.813753 CCAGGCATTGCATTGCAGC 60.814 57.895 28.93 16.14 44.59 5.25
562 563 1.218047 CAGGCATTGCATTGCAGCT 59.782 52.632 28.93 17.83 44.59 4.24
563 564 0.806102 CAGGCATTGCATTGCAGCTC 60.806 55.000 28.93 15.22 44.59 4.09
564 565 1.520787 GGCATTGCATTGCAGCTCC 60.521 57.895 28.93 13.62 44.59 4.70
565 566 1.216977 GCATTGCATTGCAGCTCCA 59.783 52.632 24.71 0.00 40.61 3.86
566 567 1.082117 GCATTGCATTGCAGCTCCAC 61.082 55.000 24.71 0.00 40.61 4.02
567 568 0.459585 CATTGCATTGCAGCTCCACC 60.460 55.000 11.76 0.00 40.61 4.61
568 569 1.610554 ATTGCATTGCAGCTCCACCC 61.611 55.000 11.76 0.00 40.61 4.61
569 570 2.362120 GCATTGCAGCTCCACCCT 60.362 61.111 3.15 0.00 0.00 4.34
570 571 2.707849 GCATTGCAGCTCCACCCTG 61.708 63.158 3.15 0.00 0.00 4.45
595 596 2.282462 GGTTCAGCACCACCCCAG 60.282 66.667 0.00 0.00 46.42 4.45
596 597 2.515901 GTTCAGCACCACCCCAGT 59.484 61.111 0.00 0.00 0.00 4.00
597 598 1.152756 GTTCAGCACCACCCCAGTT 60.153 57.895 0.00 0.00 0.00 3.16
598 599 1.152777 TTCAGCACCACCCCAGTTG 60.153 57.895 0.00 0.00 0.00 3.16
599 600 3.297620 CAGCACCACCCCAGTTGC 61.298 66.667 0.00 0.00 0.00 4.17
600 601 3.819652 AGCACCACCCCAGTTGCA 61.820 61.111 0.00 0.00 0.00 4.08
601 602 2.601367 GCACCACCCCAGTTGCAT 60.601 61.111 0.00 0.00 0.00 3.96
602 603 2.209315 GCACCACCCCAGTTGCATT 61.209 57.895 0.00 0.00 0.00 3.56
603 604 1.667151 CACCACCCCAGTTGCATTG 59.333 57.895 0.00 0.00 0.00 2.82
604 605 2.209315 ACCACCCCAGTTGCATTGC 61.209 57.895 0.46 0.46 0.00 3.56
605 606 2.208619 CCACCCCAGTTGCATTGCA 61.209 57.895 7.38 7.38 36.47 4.08
606 607 1.290955 CACCCCAGTTGCATTGCAG 59.709 57.895 11.76 1.61 40.61 4.41
607 608 2.263540 CCCCAGTTGCATTGCAGC 59.736 61.111 16.70 16.70 40.61 5.25
609 610 1.214589 CCCAGTTGCATTGCAGCTC 59.785 57.895 23.08 12.41 46.49 4.09
610 611 1.214589 CCAGTTGCATTGCAGCTCC 59.785 57.895 23.08 8.04 46.49 4.70
611 612 1.154093 CAGTTGCATTGCAGCTCCG 60.154 57.895 23.08 11.05 46.49 4.63
612 613 2.505557 GTTGCATTGCAGCTCCGC 60.506 61.111 17.09 0.00 40.61 5.54
613 614 3.751246 TTGCATTGCAGCTCCGCC 61.751 61.111 11.76 0.00 40.61 6.13
615 616 4.487412 GCATTGCAGCTCCGCCAC 62.487 66.667 3.15 0.00 0.00 5.01
616 617 3.057548 CATTGCAGCTCCGCCACA 61.058 61.111 0.00 0.00 0.00 4.17
617 618 2.282391 ATTGCAGCTCCGCCACAA 60.282 55.556 0.00 0.00 0.00 3.33
618 619 1.902918 ATTGCAGCTCCGCCACAAA 60.903 52.632 0.00 0.00 30.04 2.83
619 620 2.146073 ATTGCAGCTCCGCCACAAAC 62.146 55.000 0.00 0.00 30.04 2.93
620 621 4.389576 GCAGCTCCGCCACAAACG 62.390 66.667 0.00 0.00 0.00 3.60
621 622 2.972505 CAGCTCCGCCACAAACGT 60.973 61.111 0.00 0.00 0.00 3.99
622 623 2.972505 AGCTCCGCCACAAACGTG 60.973 61.111 0.00 0.00 0.00 4.49
623 624 4.683334 GCTCCGCCACAAACGTGC 62.683 66.667 0.00 0.00 32.73 5.34
624 625 3.276091 CTCCGCCACAAACGTGCA 61.276 61.111 0.00 0.00 32.73 4.57
625 626 3.240606 CTCCGCCACAAACGTGCAG 62.241 63.158 0.00 0.00 32.73 4.41
626 627 3.276091 CCGCCACAAACGTGCAGA 61.276 61.111 0.00 0.00 32.73 4.26
627 628 2.712539 CGCCACAAACGTGCAGAA 59.287 55.556 0.00 0.00 32.73 3.02
628 629 1.282570 CGCCACAAACGTGCAGAAT 59.717 52.632 0.00 0.00 32.73 2.40
629 630 0.725784 CGCCACAAACGTGCAGAATC 60.726 55.000 0.00 0.00 32.73 2.52
630 631 0.310543 GCCACAAACGTGCAGAATCA 59.689 50.000 0.00 0.00 32.73 2.57
631 632 1.925946 GCCACAAACGTGCAGAATCAC 60.926 52.381 0.00 0.00 32.73 3.06
637 638 4.261888 GTGCAGAATCACGTCCGT 57.738 55.556 0.00 0.00 0.00 4.69
638 639 2.528797 GTGCAGAATCACGTCCGTT 58.471 52.632 0.00 0.00 0.00 4.44
639 640 0.163788 GTGCAGAATCACGTCCGTTG 59.836 55.000 0.00 0.00 0.00 4.10
640 641 1.132640 GCAGAATCACGTCCGTTGC 59.867 57.895 0.00 0.00 0.00 4.17
641 642 1.565156 GCAGAATCACGTCCGTTGCA 61.565 55.000 8.17 0.00 30.08 4.08
642 643 1.078709 CAGAATCACGTCCGTTGCAT 58.921 50.000 0.00 0.00 0.00 3.96
643 644 1.464608 CAGAATCACGTCCGTTGCATT 59.535 47.619 0.00 0.00 0.00 3.56
644 645 2.670905 CAGAATCACGTCCGTTGCATTA 59.329 45.455 0.00 0.00 0.00 1.90
645 646 2.671396 AGAATCACGTCCGTTGCATTAC 59.329 45.455 0.00 0.00 0.00 1.89
646 647 2.087501 ATCACGTCCGTTGCATTACA 57.912 45.000 0.00 0.00 0.00 2.41
647 648 1.424403 TCACGTCCGTTGCATTACAG 58.576 50.000 0.00 0.00 0.00 2.74
648 649 0.179225 CACGTCCGTTGCATTACAGC 60.179 55.000 0.00 0.00 0.00 4.40
649 650 0.320421 ACGTCCGTTGCATTACAGCT 60.320 50.000 0.00 0.00 34.99 4.24
650 651 0.796312 CGTCCGTTGCATTACAGCTT 59.204 50.000 0.00 0.00 34.99 3.74
651 652 1.201921 CGTCCGTTGCATTACAGCTTC 60.202 52.381 0.00 0.00 34.99 3.86
652 653 2.076863 GTCCGTTGCATTACAGCTTCT 58.923 47.619 0.00 0.00 34.99 2.85
653 654 2.076100 TCCGTTGCATTACAGCTTCTG 58.924 47.619 0.00 0.00 37.52 3.02
654 655 1.466360 CCGTTGCATTACAGCTTCTGC 60.466 52.381 0.00 0.00 34.37 4.26
655 656 1.466360 CGTTGCATTACAGCTTCTGCC 60.466 52.381 0.00 0.00 40.80 4.85
656 657 0.804364 TTGCATTACAGCTTCTGCCG 59.196 50.000 0.00 0.00 40.80 5.69
657 658 1.063166 GCATTACAGCTTCTGCCGC 59.937 57.895 0.00 0.00 40.80 6.53
658 659 1.723870 CATTACAGCTTCTGCCGCC 59.276 57.895 0.00 0.00 40.80 6.13
659 660 1.815421 ATTACAGCTTCTGCCGCCG 60.815 57.895 0.00 0.00 40.80 6.46
660 661 3.950794 TTACAGCTTCTGCCGCCGG 62.951 63.158 0.00 0.00 40.80 6.13
687 688 3.612681 CGTGTCCCGTCACCACCT 61.613 66.667 0.00 0.00 35.18 4.00
688 689 2.826702 GTGTCCCGTCACCACCTT 59.173 61.111 0.00 0.00 32.81 3.50
689 690 1.808531 CGTGTCCCGTCACCACCTTA 61.809 60.000 0.00 0.00 35.18 2.69
690 691 0.037605 GTGTCCCGTCACCACCTTAG 60.038 60.000 0.00 0.00 32.81 2.18
691 692 0.470456 TGTCCCGTCACCACCTTAGT 60.470 55.000 0.00 0.00 0.00 2.24
692 693 0.683412 GTCCCGTCACCACCTTAGTT 59.317 55.000 0.00 0.00 0.00 2.24
693 694 0.682852 TCCCGTCACCACCTTAGTTG 59.317 55.000 0.00 0.00 0.00 3.16
694 695 0.953960 CCCGTCACCACCTTAGTTGC 60.954 60.000 0.00 0.00 0.00 4.17
695 696 0.250124 CCGTCACCACCTTAGTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
696 697 1.610624 CCGTCACCACCTTAGTTGCAT 60.611 52.381 0.00 0.00 0.00 3.96
697 698 2.151202 CGTCACCACCTTAGTTGCATT 58.849 47.619 0.00 0.00 0.00 3.56
698 699 2.095768 CGTCACCACCTTAGTTGCATTG 60.096 50.000 0.00 0.00 0.00 2.82
699 700 1.885887 TCACCACCTTAGTTGCATTGC 59.114 47.619 0.46 0.46 0.00 3.56
700 701 1.612950 CACCACCTTAGTTGCATTGCA 59.387 47.619 7.38 7.38 36.47 4.08
701 702 1.888512 ACCACCTTAGTTGCATTGCAG 59.111 47.619 11.76 1.61 40.61 4.41
702 703 1.403249 CCACCTTAGTTGCATTGCAGC 60.403 52.381 16.70 16.70 40.61 5.25
704 705 1.815003 ACCTTAGTTGCATTGCAGCTC 59.185 47.619 28.05 14.85 46.49 4.09
705 706 1.133790 CCTTAGTTGCATTGCAGCTCC 59.866 52.381 28.05 10.63 46.49 4.70
706 707 0.804364 TTAGTTGCATTGCAGCTCCG 59.196 50.000 28.05 0.00 46.49 4.63
707 708 1.647545 TAGTTGCATTGCAGCTCCGC 61.648 55.000 28.05 8.75 46.49 5.54
708 709 2.674033 TTGCATTGCAGCTCCGCT 60.674 55.556 11.76 0.00 40.61 5.52
717 718 4.731612 AGCTCCGCTGCTGACGTG 62.732 66.667 0.00 0.00 42.33 4.49
727 728 4.156622 CTGACGTGCAGCGCCATG 62.157 66.667 2.29 3.71 46.11 3.66
728 729 4.986645 TGACGTGCAGCGCCATGT 62.987 61.111 10.74 10.74 46.11 3.21
729 730 4.152625 GACGTGCAGCGCCATGTC 62.153 66.667 18.89 18.89 46.11 3.06
734 735 4.465512 GCAGCGCCATGTCCGTTG 62.466 66.667 2.29 13.06 39.44 4.10
735 736 4.465512 CAGCGCCATGTCCGTTGC 62.466 66.667 2.29 0.00 30.72 4.17
737 738 3.814268 GCGCCATGTCCGTTGCAT 61.814 61.111 0.00 0.00 0.00 3.96
738 739 2.876955 CGCCATGTCCGTTGCATT 59.123 55.556 0.00 0.00 0.00 3.56
739 740 1.987704 GCGCCATGTCCGTTGCATTA 61.988 55.000 0.00 0.00 0.00 1.90
740 741 0.248054 CGCCATGTCCGTTGCATTAC 60.248 55.000 0.00 0.00 0.00 1.89
741 742 0.808125 GCCATGTCCGTTGCATTACA 59.192 50.000 0.00 0.00 0.00 2.41
742 743 1.202177 GCCATGTCCGTTGCATTACAG 60.202 52.381 0.00 0.00 0.00 2.74
743 744 1.202177 CCATGTCCGTTGCATTACAGC 60.202 52.381 0.00 0.00 0.00 4.40
744 745 1.739466 CATGTCCGTTGCATTACAGCT 59.261 47.619 0.00 0.00 34.99 4.24
745 746 1.890876 TGTCCGTTGCATTACAGCTT 58.109 45.000 0.00 0.00 34.99 3.74
746 747 1.804151 TGTCCGTTGCATTACAGCTTC 59.196 47.619 0.00 0.00 34.99 3.86
747 748 2.076863 GTCCGTTGCATTACAGCTTCT 58.923 47.619 0.00 0.00 34.99 2.85
748 749 2.076100 TCCGTTGCATTACAGCTTCTG 58.924 47.619 0.00 0.00 37.52 3.02
749 750 1.466360 CCGTTGCATTACAGCTTCTGC 60.466 52.381 0.00 0.00 34.37 4.26
750 751 1.466360 CGTTGCATTACAGCTTCTGCC 60.466 52.381 0.00 0.00 40.80 4.85
751 752 0.804364 TTGCATTACAGCTTCTGCCG 59.196 50.000 0.00 0.00 40.80 5.69
752 753 1.063166 GCATTACAGCTTCTGCCGC 59.937 57.895 0.00 0.00 40.80 6.53
753 754 1.723870 CATTACAGCTTCTGCCGCC 59.276 57.895 0.00 0.00 40.80 6.13
754 755 1.815421 ATTACAGCTTCTGCCGCCG 60.815 57.895 0.00 0.00 40.80 6.46
755 756 2.238847 ATTACAGCTTCTGCCGCCGA 62.239 55.000 0.00 0.00 40.80 5.54
756 757 3.642778 TACAGCTTCTGCCGCCGAC 62.643 63.158 0.00 0.00 40.80 4.79
776 777 4.451150 GATCCGTGGGTCGCAGCA 62.451 66.667 0.00 0.00 38.35 4.41
777 778 4.760047 ATCCGTGGGTCGCAGCAC 62.760 66.667 0.00 0.00 38.35 4.40
781 782 4.008933 GTGGGTCGCAGCACCTCT 62.009 66.667 12.17 0.00 36.57 3.69
782 783 3.241530 TGGGTCGCAGCACCTCTT 61.242 61.111 12.17 0.00 36.57 2.85
783 784 2.743928 GGGTCGCAGCACCTCTTG 60.744 66.667 12.17 0.00 36.57 3.02
784 785 2.031163 GGTCGCAGCACCTCTTGT 59.969 61.111 6.74 0.00 33.08 3.16
790 791 2.407268 CAGCACCTCTTGTGTTGCA 58.593 52.632 0.00 0.00 46.92 4.08
791 792 0.956633 CAGCACCTCTTGTGTTGCAT 59.043 50.000 0.00 0.00 46.92 3.96
792 793 1.338973 CAGCACCTCTTGTGTTGCATT 59.661 47.619 0.00 0.00 46.92 3.56
793 794 2.860971 CAGCACCTCTTGTGTTGCATTG 60.861 50.000 0.00 0.00 46.92 2.82
794 795 5.346383 CAGCACCTCTTGTGTTGCATTGT 62.346 47.826 0.00 0.00 46.92 2.71
795 796 6.044354 CAGCACCTCTTGTGTTGCATTGTA 62.044 45.833 0.00 0.00 46.92 2.41
796 797 4.151258 CACCTCTTGTGTTGCATTGTAG 57.849 45.455 0.00 0.00 40.26 2.74
797 798 2.554032 ACCTCTTGTGTTGCATTGTAGC 59.446 45.455 0.00 0.00 0.00 3.58
798 799 2.816087 CCTCTTGTGTTGCATTGTAGCT 59.184 45.455 0.00 0.00 34.99 3.32
799 800 3.120060 CCTCTTGTGTTGCATTGTAGCTC 60.120 47.826 0.00 0.00 34.99 4.09
800 801 2.813754 TCTTGTGTTGCATTGTAGCTCC 59.186 45.455 0.00 0.00 34.99 4.70
801 802 1.155889 TGTGTTGCATTGTAGCTCCG 58.844 50.000 0.00 0.00 34.99 4.63
802 803 0.179189 GTGTTGCATTGTAGCTCCGC 60.179 55.000 0.00 0.00 34.99 5.54
803 804 1.305219 TGTTGCATTGTAGCTCCGCC 61.305 55.000 0.00 0.00 34.99 6.13
804 805 2.106074 TTGCATTGTAGCTCCGCCG 61.106 57.895 0.00 0.00 34.99 6.46
805 806 3.941836 GCATTGTAGCTCCGCCGC 61.942 66.667 0.00 0.00 0.00 6.53
806 807 3.272334 CATTGTAGCTCCGCCGCC 61.272 66.667 0.00 0.00 0.00 6.13
807 808 4.547367 ATTGTAGCTCCGCCGCCC 62.547 66.667 0.00 0.00 0.00 6.13
826 827 3.148279 GGGGAGATCCGCGAGTGT 61.148 66.667 8.23 0.00 39.23 3.55
827 828 2.105128 GGGAGATCCGCGAGTGTG 59.895 66.667 8.23 0.00 36.71 3.82
828 829 2.583593 GGAGATCCGCGAGTGTGC 60.584 66.667 8.23 0.00 0.00 4.57
829 830 2.181777 GAGATCCGCGAGTGTGCA 59.818 61.111 8.23 0.00 34.15 4.57
830 831 1.227089 GAGATCCGCGAGTGTGCAT 60.227 57.895 8.23 0.00 34.15 3.96
831 832 1.485838 GAGATCCGCGAGTGTGCATG 61.486 60.000 8.23 0.00 34.15 4.06
832 833 1.519234 GATCCGCGAGTGTGCATGA 60.519 57.895 8.23 0.00 34.15 3.07
833 834 1.756375 GATCCGCGAGTGTGCATGAC 61.756 60.000 8.23 0.00 34.15 3.06
834 835 2.505635 ATCCGCGAGTGTGCATGACA 62.506 55.000 8.23 0.00 34.15 3.58
835 836 2.102438 CCGCGAGTGTGCATGACAT 61.102 57.895 8.23 0.00 36.78 3.06
836 837 1.638388 CCGCGAGTGTGCATGACATT 61.638 55.000 8.23 0.00 36.78 2.71
837 838 0.519792 CGCGAGTGTGCATGACATTG 60.520 55.000 0.00 0.00 36.78 2.82
838 839 0.795735 GCGAGTGTGCATGACATTGC 60.796 55.000 0.00 1.00 43.07 3.56
846 847 1.930567 GCATGACATTGCAACATCCC 58.069 50.000 0.00 0.00 42.31 3.85
847 848 1.479323 GCATGACATTGCAACATCCCT 59.521 47.619 0.00 0.00 42.31 4.20
848 849 2.480759 GCATGACATTGCAACATCCCTC 60.481 50.000 0.00 0.00 42.31 4.30
849 850 2.885135 TGACATTGCAACATCCCTCT 57.115 45.000 0.00 0.00 0.00 3.69
850 851 2.439409 TGACATTGCAACATCCCTCTG 58.561 47.619 0.00 0.00 0.00 3.35
851 852 1.747355 GACATTGCAACATCCCTCTGG 59.253 52.381 0.00 0.00 0.00 3.86
852 853 0.458669 CATTGCAACATCCCTCTGGC 59.541 55.000 0.00 0.00 0.00 4.85
853 854 0.040058 ATTGCAACATCCCTCTGGCA 59.960 50.000 0.00 0.00 0.00 4.92
854 855 0.609957 TTGCAACATCCCTCTGGCAG 60.610 55.000 8.58 8.58 32.31 4.85
855 856 1.751927 GCAACATCCCTCTGGCAGG 60.752 63.158 15.73 5.31 43.01 4.85
856 857 1.751927 CAACATCCCTCTGGCAGGC 60.752 63.158 15.73 0.00 41.80 4.85
857 858 3.335356 AACATCCCTCTGGCAGGCG 62.335 63.158 15.73 6.20 41.80 5.52
858 859 3.790437 CATCCCTCTGGCAGGCGT 61.790 66.667 15.73 0.00 41.80 5.68
859 860 3.474570 ATCCCTCTGGCAGGCGTC 61.475 66.667 15.73 0.00 41.80 5.19
862 863 4.803426 CCTCTGGCAGGCGTCGAC 62.803 72.222 15.73 5.18 34.56 4.20
863 864 4.803426 CTCTGGCAGGCGTCGACC 62.803 72.222 15.73 2.55 0.00 4.79
870 871 2.362503 AGGCGTCGACCTGATGGA 60.363 61.111 10.58 0.00 39.13 3.41
871 872 2.202756 GGCGTCGACCTGATGGAC 60.203 66.667 10.58 0.00 37.04 4.02
872 873 2.202756 GCGTCGACCTGATGGACC 60.203 66.667 10.58 0.00 32.62 4.46
873 874 2.494918 CGTCGACCTGATGGACCC 59.505 66.667 10.58 0.00 32.62 4.46
874 875 2.052690 CGTCGACCTGATGGACCCT 61.053 63.158 10.58 0.00 32.62 4.34
875 876 1.817209 GTCGACCTGATGGACCCTC 59.183 63.158 3.51 0.00 37.04 4.30
876 877 1.381327 TCGACCTGATGGACCCTCC 60.381 63.158 0.00 0.00 36.96 4.30
884 885 2.836154 TGGACCCTCCACAACAGC 59.164 61.111 0.00 0.00 42.67 4.40
885 886 2.034221 GGACCCTCCACAACAGCC 59.966 66.667 0.00 0.00 36.28 4.85
886 887 2.529744 GGACCCTCCACAACAGCCT 61.530 63.158 0.00 0.00 36.28 4.58
887 888 1.003233 GACCCTCCACAACAGCCTC 60.003 63.158 0.00 0.00 0.00 4.70
888 889 2.352805 CCCTCCACAACAGCCTCC 59.647 66.667 0.00 0.00 0.00 4.30
889 890 2.046892 CCTCCACAACAGCCTCCG 60.047 66.667 0.00 0.00 0.00 4.63
890 891 2.583441 CCTCCACAACAGCCTCCGA 61.583 63.158 0.00 0.00 0.00 4.55
891 892 1.599047 CTCCACAACAGCCTCCGAT 59.401 57.895 0.00 0.00 0.00 4.18
892 893 0.742281 CTCCACAACAGCCTCCGATG 60.742 60.000 0.00 0.00 0.00 3.84
893 894 1.191489 TCCACAACAGCCTCCGATGA 61.191 55.000 0.00 0.00 0.00 2.92
894 895 1.021390 CCACAACAGCCTCCGATGAC 61.021 60.000 0.00 0.00 0.00 3.06
895 896 0.320683 CACAACAGCCTCCGATGACA 60.321 55.000 0.00 0.00 0.00 3.58
896 897 0.396435 ACAACAGCCTCCGATGACAA 59.604 50.000 0.00 0.00 0.00 3.18
897 898 0.798776 CAACAGCCTCCGATGACAAC 59.201 55.000 0.00 0.00 0.00 3.32
898 899 0.396435 AACAGCCTCCGATGACAACA 59.604 50.000 0.00 0.00 0.00 3.33
899 900 0.320771 ACAGCCTCCGATGACAACAC 60.321 55.000 0.00 0.00 0.00 3.32
900 901 1.021390 CAGCCTCCGATGACAACACC 61.021 60.000 0.00 0.00 0.00 4.16
901 902 1.003839 GCCTCCGATGACAACACCA 60.004 57.895 0.00 0.00 0.00 4.17
902 903 0.605319 GCCTCCGATGACAACACCAA 60.605 55.000 0.00 0.00 0.00 3.67
903 904 1.442769 CCTCCGATGACAACACCAAG 58.557 55.000 0.00 0.00 0.00 3.61
904 905 1.270839 CCTCCGATGACAACACCAAGT 60.271 52.381 0.00 0.00 0.00 3.16
1563 1566 3.630312 AGTTTCCTTAACTCTTTGCGCAA 59.370 39.130 21.02 21.02 43.67 4.85
1734 1737 1.144969 GTCGGTCAAATCGTCTGCAA 58.855 50.000 0.00 0.00 0.00 4.08
1942 1945 6.647212 CACGTCTTGCTTATTAACATCTCA 57.353 37.500 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.843422 TCAAATTTTGGCTGGAAGAGGA 58.157 40.909 9.18 0.00 34.07 3.71
2 3 5.656213 AGATCAAATTTTGGCTGGAAGAG 57.344 39.130 9.18 0.00 34.07 2.85
3 4 5.305128 ACAAGATCAAATTTTGGCTGGAAGA 59.695 36.000 9.18 0.00 34.07 2.87
4 5 5.544650 ACAAGATCAAATTTTGGCTGGAAG 58.455 37.500 9.18 2.90 0.00 3.46
5 6 5.549742 ACAAGATCAAATTTTGGCTGGAA 57.450 34.783 9.18 0.00 0.00 3.53
6 7 5.549742 AACAAGATCAAATTTTGGCTGGA 57.450 34.783 9.18 0.00 0.00 3.86
7 8 7.492344 GGTATAACAAGATCAAATTTTGGCTGG 59.508 37.037 9.18 7.34 0.00 4.85
8 9 8.034215 TGGTATAACAAGATCAAATTTTGGCTG 58.966 33.333 9.18 4.73 0.00 4.85
9 10 8.133024 TGGTATAACAAGATCAAATTTTGGCT 57.867 30.769 9.18 4.78 0.00 4.75
10 11 8.947055 ATGGTATAACAAGATCAAATTTTGGC 57.053 30.769 9.18 2.67 0.00 4.52
50 51 9.361315 GTGGCTTTTCTTTCTTAAGTTTGTTTA 57.639 29.630 1.63 0.00 32.98 2.01
51 52 7.333423 GGTGGCTTTTCTTTCTTAAGTTTGTTT 59.667 33.333 1.63 0.00 32.98 2.83
52 53 6.816640 GGTGGCTTTTCTTTCTTAAGTTTGTT 59.183 34.615 1.63 0.00 32.98 2.83
53 54 6.154534 AGGTGGCTTTTCTTTCTTAAGTTTGT 59.845 34.615 1.63 0.00 32.98 2.83
54 55 6.476706 CAGGTGGCTTTTCTTTCTTAAGTTTG 59.523 38.462 1.63 0.00 32.98 2.93
55 56 6.154534 ACAGGTGGCTTTTCTTTCTTAAGTTT 59.845 34.615 1.63 0.00 32.98 2.66
56 57 5.656859 ACAGGTGGCTTTTCTTTCTTAAGTT 59.343 36.000 1.63 0.00 32.98 2.66
57 58 5.201243 ACAGGTGGCTTTTCTTTCTTAAGT 58.799 37.500 1.63 0.00 32.98 2.24
58 59 5.774498 ACAGGTGGCTTTTCTTTCTTAAG 57.226 39.130 0.00 0.00 0.00 1.85
59 60 6.538945 AAACAGGTGGCTTTTCTTTCTTAA 57.461 33.333 0.00 0.00 0.00 1.85
60 61 6.538945 AAAACAGGTGGCTTTTCTTTCTTA 57.461 33.333 0.00 0.00 0.00 2.10
61 62 5.420725 AAAACAGGTGGCTTTTCTTTCTT 57.579 34.783 0.00 0.00 0.00 2.52
62 63 5.420725 AAAAACAGGTGGCTTTTCTTTCT 57.579 34.783 0.00 0.00 0.00 2.52
63 64 6.292865 GCATAAAAACAGGTGGCTTTTCTTTC 60.293 38.462 0.00 0.00 0.00 2.62
64 65 5.527214 GCATAAAAACAGGTGGCTTTTCTTT 59.473 36.000 0.00 0.00 0.00 2.52
65 66 5.056480 GCATAAAAACAGGTGGCTTTTCTT 58.944 37.500 0.00 0.00 0.00 2.52
66 67 4.344968 AGCATAAAAACAGGTGGCTTTTCT 59.655 37.500 0.00 0.00 0.00 2.52
67 68 4.448732 CAGCATAAAAACAGGTGGCTTTTC 59.551 41.667 0.00 0.00 0.00 2.29
68 69 4.141733 ACAGCATAAAAACAGGTGGCTTTT 60.142 37.500 0.00 0.00 35.24 2.27
69 70 3.387699 ACAGCATAAAAACAGGTGGCTTT 59.612 39.130 0.00 0.00 35.24 3.51
70 71 2.965147 ACAGCATAAAAACAGGTGGCTT 59.035 40.909 0.00 0.00 35.24 4.35
71 72 2.558359 GACAGCATAAAAACAGGTGGCT 59.442 45.455 0.00 0.00 35.95 4.75
72 73 2.558359 AGACAGCATAAAAACAGGTGGC 59.442 45.455 0.00 0.00 39.00 5.01
73 74 7.283127 ACATATAGACAGCATAAAAACAGGTGG 59.717 37.037 0.00 0.00 35.24 4.61
74 75 8.213518 ACATATAGACAGCATAAAAACAGGTG 57.786 34.615 0.00 0.00 36.86 4.00
75 76 8.807948 AACATATAGACAGCATAAAAACAGGT 57.192 30.769 0.00 0.00 0.00 4.00
82 83 9.203421 CCATCGTAAACATATAGACAGCATAAA 57.797 33.333 0.00 0.00 0.00 1.40
83 84 8.364894 ACCATCGTAAACATATAGACAGCATAA 58.635 33.333 0.00 0.00 0.00 1.90
84 85 7.812669 CACCATCGTAAACATATAGACAGCATA 59.187 37.037 0.00 0.00 0.00 3.14
85 86 6.646653 CACCATCGTAAACATATAGACAGCAT 59.353 38.462 0.00 0.00 0.00 3.79
86 87 5.983118 CACCATCGTAAACATATAGACAGCA 59.017 40.000 0.00 0.00 0.00 4.41
87 88 5.405571 CCACCATCGTAAACATATAGACAGC 59.594 44.000 0.00 0.00 0.00 4.40
88 89 5.926542 CCCACCATCGTAAACATATAGACAG 59.073 44.000 0.00 0.00 0.00 3.51
89 90 5.740803 GCCCACCATCGTAAACATATAGACA 60.741 44.000 0.00 0.00 0.00 3.41
90 91 4.689345 GCCCACCATCGTAAACATATAGAC 59.311 45.833 0.00 0.00 0.00 2.59
91 92 4.262721 GGCCCACCATCGTAAACATATAGA 60.263 45.833 0.00 0.00 35.26 1.98
92 93 4.000988 GGCCCACCATCGTAAACATATAG 58.999 47.826 0.00 0.00 35.26 1.31
93 94 3.391626 TGGCCCACCATCGTAAACATATA 59.608 43.478 0.00 0.00 42.67 0.86
94 95 2.173782 TGGCCCACCATCGTAAACATAT 59.826 45.455 0.00 0.00 42.67 1.78
95 96 1.560146 TGGCCCACCATCGTAAACATA 59.440 47.619 0.00 0.00 42.67 2.29
96 97 0.329931 TGGCCCACCATCGTAAACAT 59.670 50.000 0.00 0.00 42.67 2.71
97 98 1.761822 TGGCCCACCATCGTAAACA 59.238 52.632 0.00 0.00 42.67 2.83
98 99 4.726334 TGGCCCACCATCGTAAAC 57.274 55.556 0.00 0.00 42.67 2.01
109 110 2.992817 AATTGTGGAACGCTGGCCCA 62.993 55.000 0.00 0.00 42.39 5.36
110 111 2.275380 AATTGTGGAACGCTGGCCC 61.275 57.895 0.00 0.00 42.39 5.80
111 112 1.080569 CAATTGTGGAACGCTGGCC 60.081 57.895 0.00 0.00 42.39 5.36
112 113 0.313672 TTCAATTGTGGAACGCTGGC 59.686 50.000 5.13 0.00 42.39 4.85
113 114 4.165779 GTTATTCAATTGTGGAACGCTGG 58.834 43.478 5.13 0.00 42.39 4.85
114 115 4.793071 TGTTATTCAATTGTGGAACGCTG 58.207 39.130 5.13 0.00 42.39 5.18
115 116 4.615912 GCTGTTATTCAATTGTGGAACGCT 60.616 41.667 5.13 0.00 42.39 5.07
116 117 3.608073 GCTGTTATTCAATTGTGGAACGC 59.392 43.478 5.13 10.98 42.39 4.84
117 118 4.793071 TGCTGTTATTCAATTGTGGAACG 58.207 39.130 5.13 6.13 42.39 3.95
118 119 6.624423 AGATGCTGTTATTCAATTGTGGAAC 58.376 36.000 5.13 8.41 37.35 3.62
119 120 6.127647 GGAGATGCTGTTATTCAATTGTGGAA 60.128 38.462 5.13 0.00 0.00 3.53
120 121 5.357878 GGAGATGCTGTTATTCAATTGTGGA 59.642 40.000 5.13 0.00 0.00 4.02
121 122 5.125900 TGGAGATGCTGTTATTCAATTGTGG 59.874 40.000 5.13 0.00 0.00 4.17
122 123 6.198650 TGGAGATGCTGTTATTCAATTGTG 57.801 37.500 5.13 0.00 0.00 3.33
123 124 6.839124 TTGGAGATGCTGTTATTCAATTGT 57.161 33.333 5.13 0.00 0.00 2.71
124 125 7.977293 TCAATTGGAGATGCTGTTATTCAATTG 59.023 33.333 15.18 15.18 45.23 2.32
125 126 8.070034 TCAATTGGAGATGCTGTTATTCAATT 57.930 30.769 5.42 0.00 34.99 2.32
126 127 7.649533 TCAATTGGAGATGCTGTTATTCAAT 57.350 32.000 5.42 0.00 0.00 2.57
127 128 7.339976 TCATCAATTGGAGATGCTGTTATTCAA 59.660 33.333 5.42 0.00 41.98 2.69
128 129 6.829811 TCATCAATTGGAGATGCTGTTATTCA 59.170 34.615 5.42 0.00 41.98 2.57
129 130 7.268199 TCATCAATTGGAGATGCTGTTATTC 57.732 36.000 5.42 0.00 41.98 1.75
130 131 7.658261 CATCATCAATTGGAGATGCTGTTATT 58.342 34.615 20.40 0.00 41.98 1.40
131 132 7.215719 CATCATCAATTGGAGATGCTGTTAT 57.784 36.000 20.40 1.51 41.98 1.89
132 133 6.628919 CATCATCAATTGGAGATGCTGTTA 57.371 37.500 20.40 0.00 41.98 2.41
133 134 5.515797 CATCATCAATTGGAGATGCTGTT 57.484 39.130 20.40 0.00 41.98 3.16
138 139 5.966742 ATCTGCATCATCAATTGGAGATG 57.033 39.130 24.54 24.54 45.64 2.90
140 141 4.788679 ACATCTGCATCATCAATTGGAGA 58.211 39.130 5.42 4.44 43.19 3.71
141 142 6.819397 ATACATCTGCATCATCAATTGGAG 57.181 37.500 5.42 0.00 33.09 3.86
142 143 8.694581 TTTATACATCTGCATCATCAATTGGA 57.305 30.769 5.42 0.00 0.00 3.53
143 144 9.923143 AATTTATACATCTGCATCATCAATTGG 57.077 29.630 5.42 0.00 0.00 3.16
195 196 1.196012 TTTGTTGGAGGGGCGTTTTT 58.804 45.000 0.00 0.00 0.00 1.94
196 197 1.069978 CATTTGTTGGAGGGGCGTTTT 59.930 47.619 0.00 0.00 0.00 2.43
197 198 0.678950 CATTTGTTGGAGGGGCGTTT 59.321 50.000 0.00 0.00 0.00 3.60
198 199 0.178975 TCATTTGTTGGAGGGGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
199 200 0.039618 ATCATTTGTTGGAGGGGCGT 59.960 50.000 0.00 0.00 0.00 5.68
200 201 0.457035 CATCATTTGTTGGAGGGGCG 59.543 55.000 0.00 0.00 0.00 6.13
201 202 1.560505 ACATCATTTGTTGGAGGGGC 58.439 50.000 0.00 0.00 33.74 5.80
202 203 4.235079 TCTACATCATTTGTTGGAGGGG 57.765 45.455 1.92 0.00 39.87 4.79
203 204 5.195940 ACATCTACATCATTTGTTGGAGGG 58.804 41.667 1.92 0.00 39.87 4.30
204 205 9.559732 TTATACATCTACATCATTTGTTGGAGG 57.440 33.333 1.92 0.00 39.87 4.30
218 219 9.489084 GCAGTGGTCATATTTTATACATCTACA 57.511 33.333 0.00 0.00 0.00 2.74
219 220 9.712305 AGCAGTGGTCATATTTTATACATCTAC 57.288 33.333 0.00 0.00 0.00 2.59
221 222 9.712305 GTAGCAGTGGTCATATTTTATACATCT 57.288 33.333 0.00 0.00 0.00 2.90
222 223 8.648097 CGTAGCAGTGGTCATATTTTATACATC 58.352 37.037 0.00 0.00 0.00 3.06
223 224 8.534333 CGTAGCAGTGGTCATATTTTATACAT 57.466 34.615 0.00 0.00 0.00 2.29
224 225 7.940178 CGTAGCAGTGGTCATATTTTATACA 57.060 36.000 0.00 0.00 0.00 2.29
259 260 3.303132 GGTTTATAATTGCCTCGCGTCAG 60.303 47.826 5.77 0.00 0.00 3.51
273 274 1.068127 GGCTCGAGAGGCGGTTTATAA 59.932 52.381 18.75 0.00 44.15 0.98
287 288 2.892640 CCTCATCCAACGGCTCGA 59.107 61.111 1.50 0.00 0.00 4.04
313 314 3.521796 GGAGCAAATCGGGCAGCC 61.522 66.667 1.26 1.26 0.00 4.85
316 317 0.326595 TACTTGGAGCAAATCGGGCA 59.673 50.000 0.00 0.00 0.00 5.36
317 318 1.017387 CTACTTGGAGCAAATCGGGC 58.983 55.000 0.00 0.00 0.00 6.13
318 319 1.209504 TCCTACTTGGAGCAAATCGGG 59.790 52.381 0.00 0.00 40.56 5.14
319 320 2.691409 TCCTACTTGGAGCAAATCGG 57.309 50.000 0.00 0.00 40.56 4.18
329 330 2.099921 CTCTCCACGTGATCCTACTTGG 59.900 54.545 19.30 3.09 40.32 3.61
330 331 2.099921 CCTCTCCACGTGATCCTACTTG 59.900 54.545 19.30 0.00 0.00 3.16
331 332 2.025226 TCCTCTCCACGTGATCCTACTT 60.025 50.000 19.30 0.00 0.00 2.24
332 333 1.564818 TCCTCTCCACGTGATCCTACT 59.435 52.381 19.30 0.00 0.00 2.57
333 334 2.054232 TCCTCTCCACGTGATCCTAC 57.946 55.000 19.30 0.00 0.00 3.18
334 335 2.291346 TGTTCCTCTCCACGTGATCCTA 60.291 50.000 19.30 0.00 0.00 2.94
335 336 1.187087 GTTCCTCTCCACGTGATCCT 58.813 55.000 19.30 0.00 0.00 3.24
336 337 0.895530 TGTTCCTCTCCACGTGATCC 59.104 55.000 19.30 0.00 0.00 3.36
337 338 1.819288 TCTGTTCCTCTCCACGTGATC 59.181 52.381 19.30 0.00 0.00 2.92
338 339 1.546476 GTCTGTTCCTCTCCACGTGAT 59.454 52.381 19.30 0.00 0.00 3.06
339 340 0.959553 GTCTGTTCCTCTCCACGTGA 59.040 55.000 19.30 2.03 0.00 4.35
340 341 0.387367 CGTCTGTTCCTCTCCACGTG 60.387 60.000 9.08 9.08 0.00 4.49
341 342 1.957562 CGTCTGTTCCTCTCCACGT 59.042 57.895 0.00 0.00 0.00 4.49
342 343 1.444553 GCGTCTGTTCCTCTCCACG 60.445 63.158 0.00 0.00 0.00 4.94
343 344 1.444553 CGCGTCTGTTCCTCTCCAC 60.445 63.158 0.00 0.00 0.00 4.02
344 345 2.636412 CCGCGTCTGTTCCTCTCCA 61.636 63.158 4.92 0.00 0.00 3.86
345 346 2.182030 CCGCGTCTGTTCCTCTCC 59.818 66.667 4.92 0.00 0.00 3.71
346 347 2.507324 GCCGCGTCTGTTCCTCTC 60.507 66.667 4.92 0.00 0.00 3.20
347 348 2.992114 AGCCGCGTCTGTTCCTCT 60.992 61.111 4.92 0.00 0.00 3.69
348 349 2.811317 CAGCCGCGTCTGTTCCTC 60.811 66.667 9.38 0.00 0.00 3.71
351 352 2.387125 TTTTGCAGCCGCGTCTGTTC 62.387 55.000 19.32 3.30 42.97 3.18
352 353 1.999071 TTTTTGCAGCCGCGTCTGTT 61.999 50.000 19.32 0.00 42.97 3.16
353 354 2.477176 TTTTTGCAGCCGCGTCTGT 61.477 52.632 19.32 0.00 42.97 3.41
354 355 2.010817 GTTTTTGCAGCCGCGTCTG 61.011 57.895 13.75 13.75 42.97 3.51
355 356 2.186826 AGTTTTTGCAGCCGCGTCT 61.187 52.632 4.92 0.00 42.97 4.18
356 357 2.010817 CAGTTTTTGCAGCCGCGTC 61.011 57.895 4.92 0.00 42.97 5.19
357 358 1.999071 TTCAGTTTTTGCAGCCGCGT 61.999 50.000 4.92 0.00 42.97 6.01
358 359 1.299014 TTCAGTTTTTGCAGCCGCG 60.299 52.632 0.00 0.00 42.97 6.46
359 360 1.215014 GGTTCAGTTTTTGCAGCCGC 61.215 55.000 0.00 0.00 39.24 6.53
360 361 0.597377 GGGTTCAGTTTTTGCAGCCG 60.597 55.000 0.00 0.00 31.14 5.52
361 362 0.752658 AGGGTTCAGTTTTTGCAGCC 59.247 50.000 0.00 0.00 40.37 4.85
362 363 1.136891 ACAGGGTTCAGTTTTTGCAGC 59.863 47.619 0.00 0.00 0.00 5.25
363 364 2.689983 AGACAGGGTTCAGTTTTTGCAG 59.310 45.455 0.00 0.00 0.00 4.41
364 365 2.687935 GAGACAGGGTTCAGTTTTTGCA 59.312 45.455 0.00 0.00 0.00 4.08
365 366 2.952310 AGAGACAGGGTTCAGTTTTTGC 59.048 45.455 0.00 0.00 0.00 3.68
366 367 3.243201 GCAGAGACAGGGTTCAGTTTTTG 60.243 47.826 0.00 0.00 0.00 2.44
367 368 2.952310 GCAGAGACAGGGTTCAGTTTTT 59.048 45.455 0.00 0.00 0.00 1.94
368 369 2.173569 AGCAGAGACAGGGTTCAGTTTT 59.826 45.455 0.00 0.00 0.00 2.43
369 370 1.771255 AGCAGAGACAGGGTTCAGTTT 59.229 47.619 0.00 0.00 0.00 2.66
370 371 1.071385 CAGCAGAGACAGGGTTCAGTT 59.929 52.381 0.00 0.00 0.00 3.16
371 372 0.683973 CAGCAGAGACAGGGTTCAGT 59.316 55.000 0.00 0.00 0.00 3.41
372 373 0.673022 GCAGCAGAGACAGGGTTCAG 60.673 60.000 0.00 0.00 0.00 3.02
373 374 1.372683 GCAGCAGAGACAGGGTTCA 59.627 57.895 0.00 0.00 0.00 3.18
374 375 1.739562 CGCAGCAGAGACAGGGTTC 60.740 63.158 0.00 0.00 0.00 3.62
375 376 2.345244 CGCAGCAGAGACAGGGTT 59.655 61.111 0.00 0.00 0.00 4.11
388 389 4.527583 GGAGGAGGAGCTGCGCAG 62.528 72.222 32.83 32.83 0.00 5.18
390 391 3.397613 AATGGAGGAGGAGCTGCGC 62.398 63.158 0.00 0.00 0.00 6.09
391 392 1.523258 CAATGGAGGAGGAGCTGCG 60.523 63.158 0.00 0.00 0.00 5.18
392 393 1.823041 GCAATGGAGGAGGAGCTGC 60.823 63.158 0.00 0.00 0.00 5.25
393 394 0.179051 GAGCAATGGAGGAGGAGCTG 60.179 60.000 0.00 0.00 31.61 4.24
394 395 1.684386 CGAGCAATGGAGGAGGAGCT 61.684 60.000 0.00 0.00 34.61 4.09
395 396 1.227497 CGAGCAATGGAGGAGGAGC 60.227 63.158 0.00 0.00 0.00 4.70
396 397 0.103937 GACGAGCAATGGAGGAGGAG 59.896 60.000 0.00 0.00 0.00 3.69
397 398 1.667154 CGACGAGCAATGGAGGAGGA 61.667 60.000 0.00 0.00 0.00 3.71
398 399 1.227089 CGACGAGCAATGGAGGAGG 60.227 63.158 0.00 0.00 0.00 4.30
399 400 4.409342 CGACGAGCAATGGAGGAG 57.591 61.111 0.00 0.00 0.00 3.69
417 418 2.125673 CAGTAGGACGGCCGTTGG 60.126 66.667 34.65 14.29 39.96 3.77
418 419 1.445582 GACAGTAGGACGGCCGTTG 60.446 63.158 34.65 27.50 39.96 4.10
419 420 1.593296 GAGACAGTAGGACGGCCGTT 61.593 60.000 34.65 20.81 39.96 4.44
420 421 2.035312 AGACAGTAGGACGGCCGT 59.965 61.111 34.89 34.89 39.96 5.68
421 422 2.799371 GAGACAGTAGGACGGCCG 59.201 66.667 26.86 26.86 39.96 6.13
422 423 2.045131 ACGAGACAGTAGGACGGCC 61.045 63.158 0.00 0.00 0.00 6.13
423 424 1.136984 CACGAGACAGTAGGACGGC 59.863 63.158 0.00 0.00 0.00 5.68
424 425 1.136984 GCACGAGACAGTAGGACGG 59.863 63.158 0.00 0.00 0.00 4.79
425 426 0.179187 CTGCACGAGACAGTAGGACG 60.179 60.000 0.00 0.00 0.00 4.79
426 427 0.456995 GCTGCACGAGACAGTAGGAC 60.457 60.000 0.00 0.00 37.47 3.85
427 428 1.595993 GGCTGCACGAGACAGTAGGA 61.596 60.000 0.50 0.00 37.47 2.94
428 429 1.153745 GGCTGCACGAGACAGTAGG 60.154 63.158 0.50 0.00 37.47 3.18
429 430 1.515088 CGGCTGCACGAGACAGTAG 60.515 63.158 0.50 0.00 37.47 2.57
430 431 2.566529 CGGCTGCACGAGACAGTA 59.433 61.111 0.50 0.00 37.47 2.74
446 447 3.893763 TTTGTTGTGGCCGGTGCG 61.894 61.111 1.90 0.00 38.85 5.34
447 448 2.279186 GTTTGTTGTGGCCGGTGC 60.279 61.111 1.90 0.00 0.00 5.01
448 449 2.415426 GGTTTGTTGTGGCCGGTG 59.585 61.111 1.90 0.00 0.00 4.94
449 450 2.043852 TGGTTTGTTGTGGCCGGT 60.044 55.556 1.90 0.00 0.00 5.28
450 451 2.070654 GAGTGGTTTGTTGTGGCCGG 62.071 60.000 0.00 0.00 0.00 6.13
451 452 1.358759 GAGTGGTTTGTTGTGGCCG 59.641 57.895 0.00 0.00 0.00 6.13
452 453 1.000274 GATGAGTGGTTTGTTGTGGCC 60.000 52.381 0.00 0.00 0.00 5.36
453 454 1.956477 AGATGAGTGGTTTGTTGTGGC 59.044 47.619 0.00 0.00 0.00 5.01
454 455 2.554032 GGAGATGAGTGGTTTGTTGTGG 59.446 50.000 0.00 0.00 0.00 4.17
455 456 2.554032 GGGAGATGAGTGGTTTGTTGTG 59.446 50.000 0.00 0.00 0.00 3.33
456 457 2.489073 GGGGAGATGAGTGGTTTGTTGT 60.489 50.000 0.00 0.00 0.00 3.32
457 458 2.162681 GGGGAGATGAGTGGTTTGTTG 58.837 52.381 0.00 0.00 0.00 3.33
458 459 1.075536 GGGGGAGATGAGTGGTTTGTT 59.924 52.381 0.00 0.00 0.00 2.83
459 460 0.698818 GGGGGAGATGAGTGGTTTGT 59.301 55.000 0.00 0.00 0.00 2.83
460 461 0.698238 TGGGGGAGATGAGTGGTTTG 59.302 55.000 0.00 0.00 0.00 2.93
461 462 1.686236 ATGGGGGAGATGAGTGGTTT 58.314 50.000 0.00 0.00 0.00 3.27
462 463 2.412591 CTATGGGGGAGATGAGTGGTT 58.587 52.381 0.00 0.00 0.00 3.67
463 464 2.042301 GCTATGGGGGAGATGAGTGGT 61.042 57.143 0.00 0.00 0.00 4.16
464 465 0.689623 GCTATGGGGGAGATGAGTGG 59.310 60.000 0.00 0.00 0.00 4.00
465 466 1.427809 TGCTATGGGGGAGATGAGTG 58.572 55.000 0.00 0.00 0.00 3.51
466 467 2.173569 GTTTGCTATGGGGGAGATGAGT 59.826 50.000 0.00 0.00 0.00 3.41
467 468 2.173356 TGTTTGCTATGGGGGAGATGAG 59.827 50.000 0.00 0.00 0.00 2.90
468 469 2.173356 CTGTTTGCTATGGGGGAGATGA 59.827 50.000 0.00 0.00 0.00 2.92
469 470 2.579873 CTGTTTGCTATGGGGGAGATG 58.420 52.381 0.00 0.00 0.00 2.90
470 471 1.133668 GCTGTTTGCTATGGGGGAGAT 60.134 52.381 0.00 0.00 38.95 2.75
471 472 0.255890 GCTGTTTGCTATGGGGGAGA 59.744 55.000 0.00 0.00 38.95 3.71
472 473 0.753111 GGCTGTTTGCTATGGGGGAG 60.753 60.000 0.00 0.00 42.39 4.30
473 474 1.306296 GGCTGTTTGCTATGGGGGA 59.694 57.895 0.00 0.00 42.39 4.81
474 475 1.758122 GGGCTGTTTGCTATGGGGG 60.758 63.158 0.00 0.00 42.39 5.40
475 476 0.753111 GAGGGCTGTTTGCTATGGGG 60.753 60.000 0.00 0.00 42.39 4.96
476 477 1.097547 CGAGGGCTGTTTGCTATGGG 61.098 60.000 0.00 0.00 42.39 4.00
477 478 0.392998 ACGAGGGCTGTTTGCTATGG 60.393 55.000 0.00 0.00 42.39 2.74
478 479 1.131126 CAACGAGGGCTGTTTGCTATG 59.869 52.381 0.00 0.00 42.39 2.23
479 480 1.453155 CAACGAGGGCTGTTTGCTAT 58.547 50.000 0.00 0.00 42.39 2.97
480 481 1.234615 GCAACGAGGGCTGTTTGCTA 61.235 55.000 0.00 0.00 42.39 3.49
481 482 2.555547 GCAACGAGGGCTGTTTGCT 61.556 57.895 0.00 0.00 42.39 3.91
482 483 2.050077 GCAACGAGGGCTGTTTGC 60.050 61.111 0.00 0.00 41.94 3.68
483 484 1.008538 GTGCAACGAGGGCTGTTTG 60.009 57.895 0.00 0.00 0.00 2.93
484 485 1.152963 AGTGCAACGAGGGCTGTTT 60.153 52.632 0.00 0.00 45.86 2.83
485 486 1.893808 CAGTGCAACGAGGGCTGTT 60.894 57.895 0.00 0.00 45.86 3.16
486 487 2.281070 CAGTGCAACGAGGGCTGT 60.281 61.111 0.00 0.00 45.86 4.40
487 488 3.730761 GCAGTGCAACGAGGGCTG 61.731 66.667 11.09 0.00 45.86 4.85
488 489 4.254709 TGCAGTGCAACGAGGGCT 62.255 61.111 17.26 0.00 45.86 5.19
489 490 3.730761 CTGCAGTGCAACGAGGGC 61.731 66.667 20.22 0.00 45.86 5.19
490 491 3.730761 GCTGCAGTGCAACGAGGG 61.731 66.667 20.22 7.36 45.86 4.30
491 492 2.180131 GAAGCTGCAGTGCAACGAGG 62.180 60.000 20.22 8.13 45.86 4.63
492 493 1.206072 GAAGCTGCAGTGCAACGAG 59.794 57.895 20.22 8.54 45.86 4.18
493 494 1.227645 AGAAGCTGCAGTGCAACGA 60.228 52.632 20.22 0.00 45.86 3.85
494 495 1.082300 CAGAAGCTGCAGTGCAACG 60.082 57.895 20.22 9.72 45.86 4.10
495 496 4.937781 CAGAAGCTGCAGTGCAAC 57.062 55.556 20.22 15.35 38.41 4.17
515 516 4.803426 CTCCTGACCTCGCACGGC 62.803 72.222 0.00 0.00 0.00 5.68
516 517 4.135153 CCTCCTGACCTCGCACGG 62.135 72.222 0.00 0.00 0.00 4.94
517 518 3.343788 GACCTCCTGACCTCGCACG 62.344 68.421 0.00 0.00 0.00 5.34
518 519 2.276116 TGACCTCCTGACCTCGCAC 61.276 63.158 0.00 0.00 0.00 5.34
519 520 2.117423 TGACCTCCTGACCTCGCA 59.883 61.111 0.00 0.00 0.00 5.10
520 521 2.574399 GTGACCTCCTGACCTCGC 59.426 66.667 0.00 0.00 0.00 5.03
521 522 1.674651 TCGTGACCTCCTGACCTCG 60.675 63.158 0.00 0.00 0.00 4.63
522 523 0.894184 TGTCGTGACCTCCTGACCTC 60.894 60.000 0.00 0.00 0.00 3.85
523 524 1.153061 TGTCGTGACCTCCTGACCT 59.847 57.895 0.00 0.00 0.00 3.85
524 525 1.289380 GTGTCGTGACCTCCTGACC 59.711 63.158 0.00 0.00 0.00 4.02
525 526 1.289380 GGTGTCGTGACCTCCTGAC 59.711 63.158 0.00 0.00 32.69 3.51
526 527 1.906824 GGGTGTCGTGACCTCCTGA 60.907 63.158 5.73 0.00 36.14 3.86
527 528 2.159819 CTGGGTGTCGTGACCTCCTG 62.160 65.000 5.73 6.36 36.14 3.86
528 529 1.908793 CTGGGTGTCGTGACCTCCT 60.909 63.158 5.73 0.00 36.14 3.69
529 530 2.657237 CTGGGTGTCGTGACCTCC 59.343 66.667 5.73 0.71 36.14 4.30
530 531 2.657237 CCTGGGTGTCGTGACCTC 59.343 66.667 5.73 0.00 36.14 3.85
531 532 3.626924 GCCTGGGTGTCGTGACCT 61.627 66.667 0.00 0.00 36.14 3.85
532 533 2.748058 AATGCCTGGGTGTCGTGACC 62.748 60.000 0.00 0.00 34.96 4.02
533 534 1.302511 AATGCCTGGGTGTCGTGAC 60.303 57.895 0.00 0.00 0.00 3.67
534 535 1.302431 CAATGCCTGGGTGTCGTGA 60.302 57.895 0.00 0.00 0.00 4.35
535 536 2.981560 GCAATGCCTGGGTGTCGTG 61.982 63.158 0.00 0.00 0.00 4.35
536 537 2.672996 GCAATGCCTGGGTGTCGT 60.673 61.111 0.00 0.00 0.00 4.34
537 538 1.597797 AATGCAATGCCTGGGTGTCG 61.598 55.000 1.53 0.00 0.00 4.35
538 539 0.108520 CAATGCAATGCCTGGGTGTC 60.109 55.000 1.53 0.00 0.00 3.67
539 540 1.976898 CAATGCAATGCCTGGGTGT 59.023 52.632 1.53 0.00 0.00 4.16
540 541 1.448893 GCAATGCAATGCCTGGGTG 60.449 57.895 16.13 0.00 40.49 4.61
541 542 1.895020 CTGCAATGCAATGCCTGGGT 61.895 55.000 23.47 0.00 45.83 4.51
542 543 1.153449 CTGCAATGCAATGCCTGGG 60.153 57.895 23.47 7.83 45.83 4.45
543 544 1.813753 GCTGCAATGCAATGCCTGG 60.814 57.895 23.47 14.24 45.83 4.45
544 545 0.806102 GAGCTGCAATGCAATGCCTG 60.806 55.000 23.47 16.64 45.83 4.85
545 546 1.515954 GAGCTGCAATGCAATGCCT 59.484 52.632 23.47 14.22 45.83 4.75
546 547 1.520787 GGAGCTGCAATGCAATGCC 60.521 57.895 23.47 9.47 45.83 4.40
547 548 1.082117 GTGGAGCTGCAATGCAATGC 61.082 55.000 19.99 19.99 46.58 3.56
548 549 0.459585 GGTGGAGCTGCAATGCAATG 60.460 55.000 10.44 0.00 38.41 2.82
549 550 1.610554 GGGTGGAGCTGCAATGCAAT 61.611 55.000 10.44 0.02 38.41 3.56
550 551 2.277591 GGGTGGAGCTGCAATGCAA 61.278 57.895 10.44 0.00 38.41 4.08
551 552 2.677524 GGGTGGAGCTGCAATGCA 60.678 61.111 10.44 7.99 36.92 3.96
552 553 2.362120 AGGGTGGAGCTGCAATGC 60.362 61.111 10.44 0.00 0.00 3.56
553 554 2.707849 GCAGGGTGGAGCTGCAATG 61.708 63.158 10.44 10.63 42.98 2.82
554 555 2.362120 GCAGGGTGGAGCTGCAAT 60.362 61.111 10.44 0.00 42.98 3.56
555 556 4.666253 GGCAGGGTGGAGCTGCAA 62.666 66.667 10.44 0.00 45.02 4.08
579 580 1.152756 AACTGGGGTGGTGCTGAAC 60.153 57.895 0.00 0.00 0.00 3.18
580 581 1.152777 CAACTGGGGTGGTGCTGAA 60.153 57.895 0.00 0.00 0.00 3.02
581 582 2.515398 CAACTGGGGTGGTGCTGA 59.485 61.111 0.00 0.00 0.00 4.26
582 583 3.297620 GCAACTGGGGTGGTGCTG 61.298 66.667 0.00 0.00 0.00 4.41
583 584 2.661574 AATGCAACTGGGGTGGTGCT 62.662 55.000 6.11 0.00 0.00 4.40
584 585 2.209315 AATGCAACTGGGGTGGTGC 61.209 57.895 0.00 0.00 0.00 5.01
585 586 1.667151 CAATGCAACTGGGGTGGTG 59.333 57.895 0.00 0.00 0.00 4.17
586 587 2.209315 GCAATGCAACTGGGGTGGT 61.209 57.895 0.00 0.00 0.00 4.16
587 588 2.162338 CTGCAATGCAACTGGGGTGG 62.162 60.000 9.92 0.00 38.41 4.61
588 589 1.290955 CTGCAATGCAACTGGGGTG 59.709 57.895 9.92 0.00 38.41 4.61
589 590 2.576832 GCTGCAATGCAACTGGGGT 61.577 57.895 9.92 0.00 38.41 4.95
590 591 2.221906 GAGCTGCAATGCAACTGGGG 62.222 60.000 16.44 0.32 34.98 4.96
591 592 1.214589 GAGCTGCAATGCAACTGGG 59.785 57.895 16.44 1.11 34.98 4.45
592 593 1.214589 GGAGCTGCAATGCAACTGG 59.785 57.895 16.44 1.52 34.98 4.00
593 594 1.154093 CGGAGCTGCAATGCAACTG 60.154 57.895 16.44 8.32 34.98 3.16
594 595 3.271014 CGGAGCTGCAATGCAACT 58.729 55.556 11.26 11.26 37.70 3.16
607 608 3.240606 CTGCACGTTTGTGGCGGAG 62.241 63.158 0.00 0.00 46.51 4.63
608 609 3.276091 CTGCACGTTTGTGGCGGA 61.276 61.111 0.00 0.00 46.51 5.54
609 610 2.128853 ATTCTGCACGTTTGTGGCGG 62.129 55.000 0.00 0.00 46.51 6.13
610 611 0.725784 GATTCTGCACGTTTGTGGCG 60.726 55.000 0.00 0.00 46.51 5.69
611 612 0.310543 TGATTCTGCACGTTTGTGGC 59.689 50.000 0.00 0.00 46.51 5.01
612 613 2.036556 GTGATTCTGCACGTTTGTGG 57.963 50.000 0.00 0.00 46.51 4.17
620 621 0.163788 CAACGGACGTGATTCTGCAC 59.836 55.000 0.00 0.00 35.46 4.57
621 622 1.565156 GCAACGGACGTGATTCTGCA 61.565 55.000 12.03 0.00 30.08 4.41
622 623 1.132640 GCAACGGACGTGATTCTGC 59.867 57.895 0.00 0.07 0.00 4.26
623 624 1.078709 ATGCAACGGACGTGATTCTG 58.921 50.000 0.00 0.00 0.00 3.02
624 625 1.808411 AATGCAACGGACGTGATTCT 58.192 45.000 0.00 0.00 0.00 2.40
625 626 2.413796 TGTAATGCAACGGACGTGATTC 59.586 45.455 0.00 0.00 0.00 2.52
626 627 2.415168 CTGTAATGCAACGGACGTGATT 59.585 45.455 0.00 0.72 0.00 2.57
627 628 1.999735 CTGTAATGCAACGGACGTGAT 59.000 47.619 0.00 0.00 0.00 3.06
628 629 1.424403 CTGTAATGCAACGGACGTGA 58.576 50.000 0.00 0.00 0.00 4.35
629 630 0.179225 GCTGTAATGCAACGGACGTG 60.179 55.000 0.00 0.00 0.00 4.49
630 631 0.320421 AGCTGTAATGCAACGGACGT 60.320 50.000 1.38 0.00 34.99 4.34
631 632 0.796312 AAGCTGTAATGCAACGGACG 59.204 50.000 1.38 0.00 34.99 4.79
632 633 2.076863 AGAAGCTGTAATGCAACGGAC 58.923 47.619 1.38 0.00 34.99 4.79
633 634 2.076100 CAGAAGCTGTAATGCAACGGA 58.924 47.619 1.38 0.00 34.99 4.69
634 635 1.466360 GCAGAAGCTGTAATGCAACGG 60.466 52.381 0.00 0.00 38.54 4.44
635 636 1.466360 GGCAGAAGCTGTAATGCAACG 60.466 52.381 12.85 0.00 40.46 4.10
636 637 1.466360 CGGCAGAAGCTGTAATGCAAC 60.466 52.381 12.85 0.00 42.33 4.17
637 638 0.804364 CGGCAGAAGCTGTAATGCAA 59.196 50.000 12.85 0.00 42.33 4.08
638 639 2.470156 CGGCAGAAGCTGTAATGCA 58.530 52.632 12.85 0.00 42.33 3.96
671 672 0.037605 CTAAGGTGGTGACGGGACAC 60.038 60.000 0.00 0.00 39.70 3.67
672 673 0.470456 ACTAAGGTGGTGACGGGACA 60.470 55.000 0.00 0.00 0.00 4.02
673 674 0.683412 AACTAAGGTGGTGACGGGAC 59.317 55.000 0.00 0.00 0.00 4.46
674 675 0.682852 CAACTAAGGTGGTGACGGGA 59.317 55.000 0.00 0.00 0.00 5.14
675 676 0.953960 GCAACTAAGGTGGTGACGGG 60.954 60.000 0.00 0.00 0.00 5.28
676 677 0.250124 TGCAACTAAGGTGGTGACGG 60.250 55.000 0.00 0.00 0.00 4.79
677 678 1.808411 ATGCAACTAAGGTGGTGACG 58.192 50.000 0.00 0.00 0.00 4.35
678 679 2.351738 GCAATGCAACTAAGGTGGTGAC 60.352 50.000 0.00 0.00 0.00 3.67
679 680 1.885887 GCAATGCAACTAAGGTGGTGA 59.114 47.619 0.00 0.00 0.00 4.02
680 681 1.612950 TGCAATGCAACTAAGGTGGTG 59.387 47.619 5.01 0.00 34.76 4.17
681 682 1.888512 CTGCAATGCAACTAAGGTGGT 59.111 47.619 9.92 0.00 38.41 4.16
682 683 1.403249 GCTGCAATGCAACTAAGGTGG 60.403 52.381 9.92 0.00 38.41 4.61
683 684 1.542915 AGCTGCAATGCAACTAAGGTG 59.457 47.619 9.64 0.00 38.41 4.00
684 685 1.815003 GAGCTGCAATGCAACTAAGGT 59.185 47.619 11.42 3.35 34.98 3.50
685 686 1.133790 GGAGCTGCAATGCAACTAAGG 59.866 52.381 11.42 0.00 34.98 2.69
686 687 1.202110 CGGAGCTGCAATGCAACTAAG 60.202 52.381 11.42 4.92 34.98 2.18
687 688 0.804364 CGGAGCTGCAATGCAACTAA 59.196 50.000 11.42 0.00 34.98 2.24
688 689 2.470156 CGGAGCTGCAATGCAACTA 58.530 52.632 11.42 0.00 34.98 2.24
689 690 3.271014 CGGAGCTGCAATGCAACT 58.729 55.556 11.26 11.26 37.70 3.16
717 718 4.465512 CAACGGACATGGCGCTGC 62.466 66.667 7.64 0.00 0.00 5.25
718 719 4.465512 GCAACGGACATGGCGCTG 62.466 66.667 7.64 0.00 0.00 5.18
720 721 1.987704 TAATGCAACGGACATGGCGC 61.988 55.000 0.00 0.00 0.00 6.53
721 722 0.248054 GTAATGCAACGGACATGGCG 60.248 55.000 0.00 0.00 0.00 5.69
722 723 0.808125 TGTAATGCAACGGACATGGC 59.192 50.000 0.00 0.00 0.00 4.40
723 724 1.202177 GCTGTAATGCAACGGACATGG 60.202 52.381 1.38 0.00 0.00 3.66
724 725 1.739466 AGCTGTAATGCAACGGACATG 59.261 47.619 1.38 0.00 34.99 3.21
725 726 2.113860 AGCTGTAATGCAACGGACAT 57.886 45.000 1.38 0.00 34.99 3.06
726 727 1.804151 GAAGCTGTAATGCAACGGACA 59.196 47.619 1.38 0.00 34.99 4.02
727 728 2.076863 AGAAGCTGTAATGCAACGGAC 58.923 47.619 1.38 0.00 34.99 4.79
728 729 2.076100 CAGAAGCTGTAATGCAACGGA 58.924 47.619 1.38 0.00 34.99 4.69
729 730 1.466360 GCAGAAGCTGTAATGCAACGG 60.466 52.381 0.00 0.00 38.54 4.44
730 731 1.466360 GGCAGAAGCTGTAATGCAACG 60.466 52.381 12.85 0.00 40.46 4.10
731 732 1.466360 CGGCAGAAGCTGTAATGCAAC 60.466 52.381 12.85 0.00 42.33 4.17
732 733 0.804364 CGGCAGAAGCTGTAATGCAA 59.196 50.000 12.85 0.00 42.33 4.08
733 734 2.470156 CGGCAGAAGCTGTAATGCA 58.530 52.632 12.85 0.00 42.33 3.96
759 760 4.451150 TGCTGCGACCCACGGATC 62.451 66.667 0.00 0.00 42.12 3.36
760 761 4.760047 GTGCTGCGACCCACGGAT 62.760 66.667 0.00 0.00 42.12 4.18
764 765 3.537206 AAGAGGTGCTGCGACCCAC 62.537 63.158 14.77 10.76 36.56 4.61
765 766 3.241530 AAGAGGTGCTGCGACCCA 61.242 61.111 14.77 0.00 36.56 4.51
766 767 2.743928 CAAGAGGTGCTGCGACCC 60.744 66.667 14.77 6.24 36.56 4.46
767 768 2.031163 ACAAGAGGTGCTGCGACC 59.969 61.111 11.69 11.69 36.09 4.79
768 769 3.248029 CACAAGAGGTGCTGCGAC 58.752 61.111 0.00 0.00 41.36 5.19
775 776 5.811562 AGCTACAATGCAACACAAGAGGTG 61.812 45.833 0.00 0.00 43.60 4.00
776 777 2.554032 GCTACAATGCAACACAAGAGGT 59.446 45.455 0.00 0.00 0.00 3.85
777 778 2.816087 AGCTACAATGCAACACAAGAGG 59.184 45.455 0.00 0.00 34.99 3.69
778 779 3.120060 GGAGCTACAATGCAACACAAGAG 60.120 47.826 0.00 0.00 34.99 2.85
779 780 2.813754 GGAGCTACAATGCAACACAAGA 59.186 45.455 0.00 0.00 34.99 3.02
780 781 2.413239 CGGAGCTACAATGCAACACAAG 60.413 50.000 0.00 0.00 34.99 3.16
781 782 1.535028 CGGAGCTACAATGCAACACAA 59.465 47.619 0.00 0.00 34.99 3.33
782 783 1.155889 CGGAGCTACAATGCAACACA 58.844 50.000 0.00 0.00 34.99 3.72
783 784 3.975992 CGGAGCTACAATGCAACAC 57.024 52.632 0.00 0.00 34.99 3.32
809 810 3.148279 ACACTCGCGGATCTCCCC 61.148 66.667 6.13 0.00 0.00 4.81
810 811 2.105128 CACACTCGCGGATCTCCC 59.895 66.667 6.13 0.00 0.00 4.30
811 812 2.583593 GCACACTCGCGGATCTCC 60.584 66.667 6.13 0.00 0.00 3.71
812 813 1.227089 ATGCACACTCGCGGATCTC 60.227 57.895 6.13 0.00 33.35 2.75
813 814 1.520120 CATGCACACTCGCGGATCT 60.520 57.895 6.13 0.00 33.35 2.75
814 815 1.519234 TCATGCACACTCGCGGATC 60.519 57.895 6.13 0.00 33.35 3.36
815 816 1.811266 GTCATGCACACTCGCGGAT 60.811 57.895 6.13 0.00 33.35 4.18
816 817 2.432456 GTCATGCACACTCGCGGA 60.432 61.111 6.13 0.00 33.35 5.54
817 818 1.638388 AATGTCATGCACACTCGCGG 61.638 55.000 6.13 0.00 38.04 6.46
818 819 0.519792 CAATGTCATGCACACTCGCG 60.520 55.000 0.00 0.00 38.04 5.87
819 820 0.795735 GCAATGTCATGCACACTCGC 60.796 55.000 0.00 0.00 45.70 5.03
820 821 3.301352 GCAATGTCATGCACACTCG 57.699 52.632 0.00 0.00 45.70 4.18
827 828 1.479323 AGGGATGTTGCAATGTCATGC 59.521 47.619 0.59 6.95 46.58 4.06
828 829 3.021695 AGAGGGATGTTGCAATGTCATG 58.978 45.455 0.59 0.00 0.00 3.07
829 830 3.021695 CAGAGGGATGTTGCAATGTCAT 58.978 45.455 0.59 0.81 0.00 3.06
830 831 2.439409 CAGAGGGATGTTGCAATGTCA 58.561 47.619 0.59 0.00 0.00 3.58
831 832 1.747355 CCAGAGGGATGTTGCAATGTC 59.253 52.381 0.59 3.84 35.59 3.06
832 833 1.843368 CCAGAGGGATGTTGCAATGT 58.157 50.000 0.59 0.00 35.59 2.71
833 834 0.458669 GCCAGAGGGATGTTGCAATG 59.541 55.000 0.59 0.00 35.59 2.82
834 835 0.040058 TGCCAGAGGGATGTTGCAAT 59.960 50.000 0.59 0.00 35.59 3.56
835 836 0.609957 CTGCCAGAGGGATGTTGCAA 60.610 55.000 0.00 0.00 35.59 4.08
836 837 1.001764 CTGCCAGAGGGATGTTGCA 60.002 57.895 0.00 0.00 35.59 4.08
837 838 1.751927 CCTGCCAGAGGGATGTTGC 60.752 63.158 0.00 0.00 38.36 4.17
838 839 1.751927 GCCTGCCAGAGGGATGTTG 60.752 63.158 0.00 0.00 43.07 3.33
839 840 2.679716 GCCTGCCAGAGGGATGTT 59.320 61.111 0.00 0.00 43.07 2.71
840 841 3.790437 CGCCTGCCAGAGGGATGT 61.790 66.667 0.00 0.00 43.07 3.06
841 842 3.746949 GACGCCTGCCAGAGGGATG 62.747 68.421 0.00 0.00 43.07 3.51
842 843 3.474570 GACGCCTGCCAGAGGGAT 61.475 66.667 0.00 0.00 43.07 3.85
845 846 4.803426 GTCGACGCCTGCCAGAGG 62.803 72.222 0.00 0.00 46.13 3.69
846 847 4.803426 GGTCGACGCCTGCCAGAG 62.803 72.222 9.92 0.00 0.00 3.35
853 854 2.362503 TCCATCAGGTCGACGCCT 60.363 61.111 9.92 0.00 39.99 5.52
854 855 2.202756 GTCCATCAGGTCGACGCC 60.203 66.667 9.92 0.00 35.89 5.68
855 856 2.202756 GGTCCATCAGGTCGACGC 60.203 66.667 9.92 2.53 35.89 5.19
856 857 2.005960 GAGGGTCCATCAGGTCGACG 62.006 65.000 9.92 0.00 35.89 5.12
857 858 1.677637 GGAGGGTCCATCAGGTCGAC 61.678 65.000 7.13 7.13 36.28 4.20
858 859 1.381327 GGAGGGTCCATCAGGTCGA 60.381 63.158 5.78 0.00 36.28 4.20
859 860 1.685765 TGGAGGGTCCATCAGGTCG 60.686 63.158 5.78 0.00 42.67 4.79
860 861 4.480480 TGGAGGGTCCATCAGGTC 57.520 61.111 5.78 0.00 42.67 3.85
867 868 2.829384 GGCTGTTGTGGAGGGTCCA 61.829 63.158 0.00 0.00 45.98 4.02
868 869 2.034221 GGCTGTTGTGGAGGGTCC 59.966 66.667 0.00 0.00 36.96 4.46
869 870 1.003233 GAGGCTGTTGTGGAGGGTC 60.003 63.158 0.00 0.00 0.00 4.46
870 871 2.529744 GGAGGCTGTTGTGGAGGGT 61.530 63.158 0.00 0.00 0.00 4.34
871 872 2.352805 GGAGGCTGTTGTGGAGGG 59.647 66.667 0.00 0.00 0.00 4.30
872 873 1.903877 ATCGGAGGCTGTTGTGGAGG 61.904 60.000 0.00 0.00 0.00 4.30
873 874 0.742281 CATCGGAGGCTGTTGTGGAG 60.742 60.000 0.00 0.00 0.00 3.86
874 875 1.191489 TCATCGGAGGCTGTTGTGGA 61.191 55.000 0.00 0.00 0.00 4.02
875 876 1.021390 GTCATCGGAGGCTGTTGTGG 61.021 60.000 0.00 0.00 0.00 4.17
876 877 0.320683 TGTCATCGGAGGCTGTTGTG 60.321 55.000 0.00 0.00 0.00 3.33
877 878 0.396435 TTGTCATCGGAGGCTGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
878 879 0.798776 GTTGTCATCGGAGGCTGTTG 59.201 55.000 0.00 0.00 0.00 3.33
879 880 0.396435 TGTTGTCATCGGAGGCTGTT 59.604 50.000 0.00 0.00 0.00 3.16
880 881 0.320771 GTGTTGTCATCGGAGGCTGT 60.321 55.000 0.00 0.00 0.00 4.40
881 882 1.021390 GGTGTTGTCATCGGAGGCTG 61.021 60.000 0.00 0.00 0.00 4.85
882 883 1.296715 GGTGTTGTCATCGGAGGCT 59.703 57.895 0.00 0.00 0.00 4.58
883 884 0.605319 TTGGTGTTGTCATCGGAGGC 60.605 55.000 0.00 0.00 0.00 4.70
884 885 1.270839 ACTTGGTGTTGTCATCGGAGG 60.271 52.381 0.00 0.00 0.00 4.30
885 886 2.069273 GACTTGGTGTTGTCATCGGAG 58.931 52.381 0.00 0.00 33.75 4.63
886 887 1.270625 GGACTTGGTGTTGTCATCGGA 60.271 52.381 0.00 0.00 35.11 4.55
887 888 1.156736 GGACTTGGTGTTGTCATCGG 58.843 55.000 0.00 0.00 35.11 4.18
888 889 2.069273 GAGGACTTGGTGTTGTCATCG 58.931 52.381 0.00 0.00 34.99 3.84
889 890 3.070018 CTGAGGACTTGGTGTTGTCATC 58.930 50.000 0.00 0.00 42.22 2.92
890 891 2.811873 GCTGAGGACTTGGTGTTGTCAT 60.812 50.000 0.00 0.00 35.11 3.06
891 892 1.475034 GCTGAGGACTTGGTGTTGTCA 60.475 52.381 0.00 0.00 35.11 3.58
892 893 1.202698 AGCTGAGGACTTGGTGTTGTC 60.203 52.381 0.00 0.00 0.00 3.18
893 894 0.839946 AGCTGAGGACTTGGTGTTGT 59.160 50.000 0.00 0.00 0.00 3.32
894 895 1.972872 AAGCTGAGGACTTGGTGTTG 58.027 50.000 0.00 0.00 0.00 3.33
895 896 2.736670 AAAGCTGAGGACTTGGTGTT 57.263 45.000 0.00 0.00 0.00 3.32
896 897 2.706190 AGTAAAGCTGAGGACTTGGTGT 59.294 45.455 0.00 0.00 0.00 4.16
897 898 3.244215 TGAGTAAAGCTGAGGACTTGGTG 60.244 47.826 0.00 0.00 0.00 4.17
898 899 2.972713 TGAGTAAAGCTGAGGACTTGGT 59.027 45.455 0.00 0.00 0.00 3.67
899 900 3.685139 TGAGTAAAGCTGAGGACTTGG 57.315 47.619 0.00 0.00 0.00 3.61
900 901 4.636249 ACTTGAGTAAAGCTGAGGACTTG 58.364 43.478 0.00 0.00 39.76 3.16
901 902 4.965200 ACTTGAGTAAAGCTGAGGACTT 57.035 40.909 0.00 0.00 39.76 3.01
902 903 4.965200 AACTTGAGTAAAGCTGAGGACT 57.035 40.909 0.00 0.00 39.76 3.85
903 904 4.627900 GCTAACTTGAGTAAAGCTGAGGAC 59.372 45.833 9.81 0.00 39.76 3.85
904 905 4.528596 AGCTAACTTGAGTAAAGCTGAGGA 59.471 41.667 15.93 0.00 42.37 3.71
1734 1737 6.874134 ACTTCGATTCAAGCAGTTTATGTACT 59.126 34.615 0.00 0.00 0.00 2.73
1942 1945 5.803470 GCCCTAACTATGGCGGAATATTTCT 60.803 44.000 0.00 0.00 38.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.