Multiple sequence alignment - TraesCS2D01G584100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G584100 chr2D 100.000 3669 0 0 1 3669 643799296 643802964 0.000000e+00 6776.0
1 TraesCS2D01G584100 chr2D 84.546 1113 132 25 1686 2781 643836741 643837830 0.000000e+00 1066.0
2 TraesCS2D01G584100 chr2D 94.408 304 16 1 2784 3087 618294777 618294475 2.000000e-127 466.0
3 TraesCS2D01G584100 chr2D 93.269 312 19 2 2776 3087 632796371 632796062 3.340000e-125 459.0
4 TraesCS2D01G584100 chr2D 93.103 174 11 1 1496 1668 643831176 643831349 1.690000e-63 254.0
5 TraesCS2D01G584100 chr2A 94.916 1377 59 9 1383 2755 768677098 768678467 0.000000e+00 2145.0
6 TraesCS2D01G584100 chr2A 83.765 1312 170 27 1495 2781 768716095 768717388 0.000000e+00 1203.0
7 TraesCS2D01G584100 chr2A 85.759 955 94 16 467 1387 768676031 768676977 0.000000e+00 972.0
8 TraesCS2D01G584100 chr2A 87.698 569 52 9 3112 3669 768679434 768679995 0.000000e+00 647.0
9 TraesCS2D01G584100 chr2A 94.137 307 18 0 2782 3088 434579959 434580265 5.550000e-128 468.0
10 TraesCS2D01G584100 chr2A 93.291 313 21 0 2776 3088 51641245 51641557 2.580000e-126 462.0
11 TraesCS2D01G584100 chr2A 87.500 104 12 1 1392 1495 768715903 768716005 6.440000e-23 119.0
12 TraesCS2D01G584100 chr2B 84.357 1368 166 27 4 1349 793323314 793321973 0.000000e+00 1297.0
13 TraesCS2D01G584100 chr2B 92.471 611 41 3 1983 2588 793314592 793313982 0.000000e+00 869.0
14 TraesCS2D01G584100 chr2B 90.103 677 35 5 1194 1867 793296367 793295720 0.000000e+00 850.0
15 TraesCS2D01G584100 chr2B 89.848 660 62 4 221 879 793302813 793302158 0.000000e+00 843.0
16 TraesCS2D01G584100 chr2B 94.753 324 17 0 876 1199 793301963 793301640 4.230000e-139 505.0
17 TraesCS2D01G584100 chr2B 85.762 302 38 4 1662 1959 793321908 793321608 7.650000e-82 315.0
18 TraesCS2D01G584100 chr2B 91.667 192 5 6 2485 2668 793281009 793280821 4.700000e-64 255.0
19 TraesCS2D01G584100 chr2B 91.743 109 9 0 2381 2489 793293330 793293222 6.350000e-33 152.0
20 TraesCS2D01G584100 chr2B 77.007 274 55 5 427 695 643316142 643315872 2.280000e-32 150.0
21 TraesCS2D01G584100 chr7D 94.194 310 16 2 2778 3087 82851129 82851436 4.290000e-129 472.0
22 TraesCS2D01G584100 chr1B 94.463 307 16 1 2783 3089 683992175 683991870 4.290000e-129 472.0
23 TraesCS2D01G584100 chr3B 94.426 305 17 0 2782 3086 449806850 449806546 1.540000e-128 470.0
24 TraesCS2D01G584100 chr7B 94.118 306 18 0 2783 3088 728122712 728122407 2.000000e-127 466.0
25 TraesCS2D01G584100 chr5B 93.871 310 17 2 2779 3088 635258947 635258640 2.000000e-127 466.0
26 TraesCS2D01G584100 chr5B 83.333 114 17 2 422 534 544795646 544795534 1.800000e-18 104.0
27 TraesCS2D01G584100 chr6B 75.000 304 71 4 394 694 675398606 675398907 6.390000e-28 135.0
28 TraesCS2D01G584100 chr6A 86.207 58 7 1 423 479 77100871 77100928 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G584100 chr2D 643799296 643802964 3668 False 6776.000000 6776 100.000000 1 3669 1 chr2D.!!$F1 3668
1 TraesCS2D01G584100 chr2D 643836741 643837830 1089 False 1066.000000 1066 84.546000 1686 2781 1 chr2D.!!$F3 1095
2 TraesCS2D01G584100 chr2A 768676031 768679995 3964 False 1254.666667 2145 89.457667 467 3669 3 chr2A.!!$F3 3202
3 TraesCS2D01G584100 chr2A 768715903 768717388 1485 False 661.000000 1203 85.632500 1392 2781 2 chr2A.!!$F4 1389
4 TraesCS2D01G584100 chr2B 793313982 793314592 610 True 869.000000 869 92.471000 1983 2588 1 chr2B.!!$R3 605
5 TraesCS2D01G584100 chr2B 793321608 793323314 1706 True 806.000000 1297 85.059500 4 1959 2 chr2B.!!$R6 1955
6 TraesCS2D01G584100 chr2B 793301640 793302813 1173 True 674.000000 843 92.300500 221 1199 2 chr2B.!!$R5 978
7 TraesCS2D01G584100 chr2B 793293222 793296367 3145 True 501.000000 850 90.923000 1194 2489 2 chr2B.!!$R4 1295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.036875 AGGAAGAAAGGTGCCTTCGG 59.963 55.0 3.7 0.0 39.60 4.30 F
1054 1266 0.931005 GCTAGGAAAGTTCGATGGCG 59.069 55.0 0.0 0.0 39.35 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1572 0.252103 ACCCGGAAGAAGCTCCACTA 60.252 55.0 0.73 0.0 34.91 2.74 R
3008 6377 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.0 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.577389 AAGCTCTCGGGGAATTTGG 57.423 52.632 0.00 0.00 0.00 3.28
23 24 2.359900 CTCTCGGGGAATTTGGTCTTG 58.640 52.381 0.00 0.00 0.00 3.02
30 31 4.202212 CGGGGAATTTGGTCTTGTTCTTTT 60.202 41.667 0.00 0.00 0.00 2.27
34 35 7.039011 GGGGAATTTGGTCTTGTTCTTTTATCT 60.039 37.037 0.00 0.00 0.00 1.98
71 72 8.620116 TGATTGATGTCTTATTTCACACAAGA 57.380 30.769 0.00 0.00 0.00 3.02
91 92 8.915654 CACAAGATATTTTCCTTTAGTTGTTGC 58.084 33.333 0.00 0.00 0.00 4.17
95 96 8.734386 AGATATTTTCCTTTAGTTGTTGCAGAG 58.266 33.333 0.00 0.00 0.00 3.35
101 102 6.299141 TCCTTTAGTTGTTGCAGAGAGAATT 58.701 36.000 0.00 0.00 0.00 2.17
102 103 6.205464 TCCTTTAGTTGTTGCAGAGAGAATTG 59.795 38.462 0.00 0.00 0.00 2.32
109 110 4.214119 TGTTGCAGAGAGAATTGCTTGTAC 59.786 41.667 0.00 0.00 40.87 2.90
110 111 4.006780 TGCAGAGAGAATTGCTTGTACA 57.993 40.909 0.00 0.00 40.87 2.90
117 118 6.091441 AGAGAGAATTGCTTGTACATCGTTTC 59.909 38.462 0.00 0.00 0.00 2.78
118 119 5.934625 AGAGAATTGCTTGTACATCGTTTCT 59.065 36.000 0.00 2.56 0.00 2.52
119 120 6.428159 AGAGAATTGCTTGTACATCGTTTCTT 59.572 34.615 0.00 0.00 0.00 2.52
120 121 6.373779 AGAATTGCTTGTACATCGTTTCTTG 58.626 36.000 0.00 0.00 0.00 3.02
135 136 9.605955 CATCGTTTCTTGTACATTGACAAATTA 57.394 29.630 0.00 0.00 38.80 1.40
145 146 5.144100 ACATTGACAAATTAGGGTCACCAA 58.856 37.500 0.00 0.00 43.22 3.67
146 147 5.600484 ACATTGACAAATTAGGGTCACCAAA 59.400 36.000 0.00 0.00 43.22 3.28
148 149 3.566322 TGACAAATTAGGGTCACCAAACG 59.434 43.478 0.00 0.00 39.00 3.60
150 151 4.208746 ACAAATTAGGGTCACCAAACGAA 58.791 39.130 0.00 0.00 40.13 3.85
155 156 6.693315 ATTAGGGTCACCAAACGAAATATG 57.307 37.500 0.00 0.00 40.13 1.78
158 159 5.562635 AGGGTCACCAAACGAAATATGTTA 58.437 37.500 0.00 0.00 40.13 2.41
174 175 7.625828 AATATGTTACTTACTGCAAACCTCC 57.374 36.000 0.00 0.00 0.00 4.30
175 176 3.395639 TGTTACTTACTGCAAACCTCCG 58.604 45.455 0.00 0.00 0.00 4.63
182 183 2.218603 ACTGCAAACCTCCGTACTTTG 58.781 47.619 0.00 1.27 0.00 2.77
192 193 3.007182 CCTCCGTACTTTGGACCTAACAA 59.993 47.826 0.00 0.00 0.00 2.83
193 194 4.243270 CTCCGTACTTTGGACCTAACAAG 58.757 47.826 0.00 0.00 0.00 3.16
203 204 7.228706 ACTTTGGACCTAACAAGTTTATGAGTG 59.771 37.037 0.00 0.00 0.00 3.51
208 209 6.607019 ACCTAACAAGTTTATGAGTGGGAAA 58.393 36.000 0.00 0.00 0.00 3.13
218 219 2.170166 TGAGTGGGAAACATTGGCATC 58.830 47.619 0.00 0.00 0.00 3.91
219 220 1.133025 GAGTGGGAAACATTGGCATCG 59.867 52.381 0.00 0.00 0.00 3.84
272 273 7.462571 AAAAGGCGAGGAATAAACTACAATT 57.537 32.000 0.00 0.00 0.00 2.32
284 285 8.502105 AATAAACTACAATTCGGGTTAGGAAG 57.498 34.615 0.00 0.00 0.00 3.46
298 299 0.036875 AGGAAGAAAGGTGCCTTCGG 59.963 55.000 3.70 0.00 39.60 4.30
319 320 4.920927 CGGAGAAAGAAGTGAGAAGAGAAC 59.079 45.833 0.00 0.00 0.00 3.01
328 329 1.343465 TGAGAAGAGAACGGTTCCACC 59.657 52.381 16.84 7.24 34.05 4.61
350 351 6.543465 CACCAAAGGATATGATCAAGTAAGCA 59.457 38.462 0.00 0.00 0.00 3.91
408 409 4.141018 ACCTTTGGTTGGATGTTTAGGAGT 60.141 41.667 0.00 0.00 27.29 3.85
442 443 3.490348 CCAACCCATCAGAGTTCAAGTT 58.510 45.455 0.00 0.00 0.00 2.66
464 465 7.445121 AGTTCTAGACTTGTCATTGATGTTCA 58.555 34.615 0.00 0.00 33.92 3.18
479 481 8.653338 CATTGATGTTCACATTTTTCTGGATTC 58.347 33.333 0.00 0.00 36.57 2.52
500 502 2.210144 TTTCAGGCCTTCCGGGGATG 62.210 60.000 0.00 0.00 37.47 3.51
579 581 6.630071 TCGTTAATCTGAAGATGATGTGTCA 58.370 36.000 0.00 0.00 39.04 3.58
580 582 6.531594 TCGTTAATCTGAAGATGATGTGTCAC 59.468 38.462 0.00 0.00 37.14 3.67
582 584 4.831674 ATCTGAAGATGATGTGTCACCA 57.168 40.909 0.00 0.00 37.14 4.17
623 626 2.247699 AGGAGTAGGGTGTGTGCATA 57.752 50.000 0.00 0.00 0.00 3.14
628 631 0.978151 TAGGGTGTGTGCATACGGTT 59.022 50.000 9.18 0.00 0.00 4.44
645 648 3.893813 ACGGTTATAGGGGTGAGTGTATC 59.106 47.826 0.00 0.00 0.00 2.24
661 664 7.706607 GTGAGTGTATCTGTATATGTTTGAGCA 59.293 37.037 0.00 0.00 0.00 4.26
665 668 9.914131 GTGTATCTGTATATGTTTGAGCATCTA 57.086 33.333 0.00 0.00 34.92 1.98
666 669 9.914131 TGTATCTGTATATGTTTGAGCATCTAC 57.086 33.333 0.00 0.00 34.92 2.59
667 670 9.914131 GTATCTGTATATGTTTGAGCATCTACA 57.086 33.333 6.12 6.12 36.64 2.74
670 673 9.836864 TCTGTATATGTTTGAGCATCTACATTT 57.163 29.630 6.55 0.00 40.07 2.32
682 691 7.545615 TGAGCATCTACATTTGTACTGTGTTAG 59.454 37.037 0.00 0.00 34.92 2.34
769 778 7.099764 TGCATCTGGAACACAAAAACTAAAAA 58.900 30.769 0.00 0.00 0.00 1.94
792 801 5.441718 AGAAAGGAAGATGCTCCATGTTA 57.558 39.130 0.00 0.00 38.02 2.41
951 1163 1.006043 TCTCTCGATCTCCAACCCTGT 59.994 52.381 0.00 0.00 0.00 4.00
999 1211 1.417890 CATCCTGGGCGTAAGGAAGAT 59.582 52.381 6.33 0.00 46.76 2.40
1054 1266 0.931005 GCTAGGAAAGTTCGATGGCG 59.069 55.000 0.00 0.00 39.35 5.69
1388 1728 5.049612 GCTTCTTCCGGGTAATTAAGTATGC 60.050 44.000 0.00 0.08 0.00 3.14
1399 1739 9.083080 GGGTAATTAAGTATGCAAAACATGTTC 57.917 33.333 12.39 0.00 40.06 3.18
1409 1749 4.088648 GCAAAACATGTTCGATTCGTAGG 58.911 43.478 12.39 0.00 0.00 3.18
1410 1750 4.378046 GCAAAACATGTTCGATTCGTAGGT 60.378 41.667 12.39 0.00 0.00 3.08
1431 1771 7.259088 AGGTTAACAACATCTCAGGTCTAAT 57.741 36.000 8.10 0.00 0.00 1.73
1446 1786 8.801882 TCAGGTCTAATTTTATGGGTTTAGTG 57.198 34.615 0.00 0.00 0.00 2.74
1631 2062 5.595952 TGGTAACCCTAGCTAGCTAACTAAC 59.404 44.000 24.20 17.18 0.00 2.34
1708 2154 2.223340 GGATGCGATGCGTCAATTCTTT 60.223 45.455 12.56 0.00 45.37 2.52
1824 2272 2.280797 GTGCACGAAGCCTGTGGA 60.281 61.111 0.00 0.00 44.83 4.02
1836 2284 1.908793 CTGTGGACCCACCGTCTCT 60.909 63.158 15.86 0.00 45.63 3.10
1936 3821 4.733850 GCATGTGGCTAAACTTCCTTAAC 58.266 43.478 0.00 0.00 40.25 2.01
1942 3827 5.298527 GTGGCTAAACTTCCTTAACTGTTGT 59.701 40.000 2.69 0.00 0.00 3.32
2022 3919 1.893808 AACTTGCAGTCAGGTGGCG 60.894 57.895 0.00 0.00 32.46 5.69
2255 4324 3.322254 ACTCCGACTCTGATGACTTTGTT 59.678 43.478 0.00 0.00 0.00 2.83
2280 4349 2.571653 AGGCTACAAGATAACTGCACCA 59.428 45.455 0.00 0.00 0.00 4.17
2294 4363 4.955774 ACCACCGACGTGAACCGC 62.956 66.667 0.00 0.00 43.14 5.68
2403 4838 1.372683 GTGCAGCTCCTCCTCAACA 59.627 57.895 0.00 0.00 0.00 3.33
2408 4843 1.622811 CAGCTCCTCCTCAACAAGACT 59.377 52.381 0.00 0.00 0.00 3.24
2417 4852 2.168496 CTCAACAAGACTACCCGAGGA 58.832 52.381 0.00 0.00 0.00 3.71
2553 4988 3.790456 GCAGTGCTACTAGTCTCATCGTG 60.790 52.174 8.18 0.20 0.00 4.35
2672 5127 8.603242 AACTATGTTGAAGACGACTGTTAATT 57.397 30.769 0.00 0.00 0.00 1.40
2698 5153 5.755861 CCTTGTAATAAGAAGGAGTAGCAGC 59.244 44.000 0.00 0.00 46.79 5.25
2774 6143 1.376037 CAGAGTTGGAGGCGGTTCC 60.376 63.158 0.00 0.00 37.77 3.62
2781 6150 1.221021 GGAGGCGGTTCCGAATCTT 59.779 57.895 15.69 0.00 40.77 2.40
2782 6151 0.392595 GGAGGCGGTTCCGAATCTTT 60.393 55.000 15.69 0.00 40.77 2.52
2783 6152 1.450025 GAGGCGGTTCCGAATCTTTT 58.550 50.000 15.69 0.00 40.77 2.27
2784 6153 1.810755 GAGGCGGTTCCGAATCTTTTT 59.189 47.619 15.69 0.00 40.77 1.94
2811 6180 6.583912 TTGAACATTAGTATAGACGCAAGC 57.416 37.500 0.00 0.00 45.62 4.01
2812 6181 5.047847 TGAACATTAGTATAGACGCAAGCC 58.952 41.667 0.00 0.00 45.62 4.35
2813 6182 3.991367 ACATTAGTATAGACGCAAGCCC 58.009 45.455 0.00 0.00 45.62 5.19
2814 6183 3.641906 ACATTAGTATAGACGCAAGCCCT 59.358 43.478 0.00 0.00 45.62 5.19
2815 6184 4.238514 CATTAGTATAGACGCAAGCCCTC 58.761 47.826 0.00 0.00 45.62 4.30
2816 6185 0.669077 AGTATAGACGCAAGCCCTCG 59.331 55.000 0.00 0.00 45.62 4.63
2817 6186 0.384669 GTATAGACGCAAGCCCTCGT 59.615 55.000 0.00 0.00 45.62 4.18
2818 6187 1.605710 GTATAGACGCAAGCCCTCGTA 59.394 52.381 0.00 0.00 45.62 3.43
2819 6188 1.329256 ATAGACGCAAGCCCTCGTAT 58.671 50.000 0.00 0.00 45.62 3.06
2820 6189 1.971481 TAGACGCAAGCCCTCGTATA 58.029 50.000 0.00 0.00 45.62 1.47
2821 6190 0.384669 AGACGCAAGCCCTCGTATAC 59.615 55.000 0.00 0.00 45.62 1.47
2822 6191 0.101759 GACGCAAGCCCTCGTATACA 59.898 55.000 3.32 0.00 45.62 2.29
2823 6192 0.179119 ACGCAAGCCCTCGTATACAC 60.179 55.000 3.32 0.00 45.62 2.90
2824 6193 3.787788 ACGCAAGCCCTCGTATACACG 62.788 57.143 3.32 0.00 46.63 4.49
2834 6203 1.750351 CGTATACACGCGCATACACT 58.250 50.000 19.70 0.00 42.05 3.55
2835 6204 1.707117 CGTATACACGCGCATACACTC 59.293 52.381 19.70 0.00 42.05 3.51
2836 6205 2.723209 GTATACACGCGCATACACTCA 58.277 47.619 5.73 0.00 0.00 3.41
2837 6206 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
2838 6207 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
2839 6208 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
2840 6209 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
2841 6210 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
2842 6211 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
2843 6212 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
2844 6213 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
2845 6214 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
2846 6215 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
2847 6216 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
2848 6217 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
2849 6218 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
2850 6219 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
2851 6220 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
2852 6221 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
2853 6222 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2854 6223 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
2855 6224 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
2856 6225 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
2857 6226 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
2858 6227 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
2859 6228 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
2860 6229 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2861 6230 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
2862 6231 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
2865 6234 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
2866 6235 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
2867 6236 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
2868 6237 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
2869 6238 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
2870 6239 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
2871 6240 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
2872 6241 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
2873 6242 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
2874 6243 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
2875 6244 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
2876 6245 2.330216 GCACACCCTATCCCTATGAGT 58.670 52.381 0.00 0.00 0.00 3.41
2877 6246 3.507411 GCACACCCTATCCCTATGAGTA 58.493 50.000 0.00 0.00 0.00 2.59
2878 6247 4.097418 GCACACCCTATCCCTATGAGTAT 58.903 47.826 0.00 0.00 0.00 2.12
2879 6248 4.160626 GCACACCCTATCCCTATGAGTATC 59.839 50.000 0.00 0.00 0.00 2.24
2880 6249 5.584913 CACACCCTATCCCTATGAGTATCT 58.415 45.833 0.00 0.00 34.92 1.98
2881 6250 5.654650 CACACCCTATCCCTATGAGTATCTC 59.345 48.000 0.00 0.00 34.92 2.75
2882 6251 5.205056 CACCCTATCCCTATGAGTATCTCC 58.795 50.000 0.00 0.00 34.92 3.71
2883 6252 4.079672 ACCCTATCCCTATGAGTATCTCCG 60.080 50.000 0.00 0.00 34.92 4.63
2884 6253 4.166337 CCCTATCCCTATGAGTATCTCCGA 59.834 50.000 0.00 0.00 34.92 4.55
2885 6254 5.340110 CCCTATCCCTATGAGTATCTCCGAA 60.340 48.000 0.00 0.00 34.92 4.30
2886 6255 6.188407 CCTATCCCTATGAGTATCTCCGAAA 58.812 44.000 0.00 0.00 34.92 3.46
2887 6256 6.320164 CCTATCCCTATGAGTATCTCCGAAAG 59.680 46.154 0.00 0.00 34.92 2.62
2888 6257 5.320488 TCCCTATGAGTATCTCCGAAAGA 57.680 43.478 0.00 0.00 38.72 2.52
2889 6258 5.071370 TCCCTATGAGTATCTCCGAAAGAC 58.929 45.833 0.00 0.00 36.65 3.01
2890 6259 5.074115 CCCTATGAGTATCTCCGAAAGACT 58.926 45.833 0.00 0.00 36.65 3.24
2891 6260 5.048364 CCCTATGAGTATCTCCGAAAGACTG 60.048 48.000 0.00 0.00 36.65 3.51
2892 6261 5.765677 CCTATGAGTATCTCCGAAAGACTGA 59.234 44.000 0.00 0.00 36.65 3.41
2893 6262 5.766150 ATGAGTATCTCCGAAAGACTGAG 57.234 43.478 0.00 0.00 36.65 3.35
2894 6263 3.378742 TGAGTATCTCCGAAAGACTGAGC 59.621 47.826 0.00 0.00 36.65 4.26
2895 6264 2.691011 AGTATCTCCGAAAGACTGAGCC 59.309 50.000 0.00 0.00 36.65 4.70
2896 6265 0.457851 ATCTCCGAAAGACTGAGCCG 59.542 55.000 0.00 0.00 36.65 5.52
2897 6266 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
2898 6267 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
2899 6268 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
2900 6269 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
2901 6270 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
2902 6271 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
2903 6272 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
2904 6273 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
2905 6274 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
2906 6275 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
2907 6276 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
2908 6277 1.274728 ACTGAGCCGGCATATCATCTC 59.725 52.381 31.54 15.36 0.00 2.75
2909 6278 1.274447 CTGAGCCGGCATATCATCTCA 59.726 52.381 31.54 19.35 0.00 3.27
2910 6279 1.693606 TGAGCCGGCATATCATCTCAA 59.306 47.619 31.54 2.81 0.00 3.02
2911 6280 2.289257 TGAGCCGGCATATCATCTCAAG 60.289 50.000 31.54 0.00 0.00 3.02
2912 6281 1.973515 AGCCGGCATATCATCTCAAGA 59.026 47.619 31.54 0.00 0.00 3.02
2913 6282 2.570752 AGCCGGCATATCATCTCAAGAT 59.429 45.455 31.54 0.00 34.56 2.40
2914 6283 3.008813 AGCCGGCATATCATCTCAAGATT 59.991 43.478 31.54 0.00 31.21 2.40
2915 6284 3.755378 GCCGGCATATCATCTCAAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
2916 6285 4.937620 GCCGGCATATCATCTCAAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
2917 6286 5.163814 GCCGGCATATCATCTCAAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
2918 6287 5.062683 CCGGCATATCATCTCAAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
2919 6288 5.863935 CGGCATATCATCTCAAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
2920 6289 6.366061 CGGCATATCATCTCAAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
2921 6290 7.411264 CGGCATATCATCTCAAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
2922 6291 7.386299 GGCATATCATCTCAAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
2923 6292 8.431593 GCATATCATCTCAAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
2924 6293 9.468532 CATATCATCTCAAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
2925 6294 7.763172 ATCATCTCAAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
2926 6295 6.100004 TCATCTCAAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
2927 6296 4.482386 TCTCAAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
2928 6297 4.022589 TCTCAAGATTTACGAAGTCACCGT 60.023 41.667 0.00 0.00 43.93 4.83
2929 6298 5.181811 TCTCAAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
2930 6299 5.396484 TCAAGATTTACGAAGTCACCGTAG 58.604 41.667 0.00 0.00 43.93 3.51
2942 6311 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
2943 6312 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
2944 6313 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
2945 6314 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
2946 6315 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
2964 6333 4.144703 GGGAACGTCTCCTCCCGC 62.145 72.222 7.28 0.00 44.68 6.13
2965 6334 3.069318 GGAACGTCTCCTCCCGCT 61.069 66.667 8.87 0.00 41.61 5.52
2966 6335 2.182030 GAACGTCTCCTCCCGCTG 59.818 66.667 0.00 0.00 0.00 5.18
2967 6336 2.282958 AACGTCTCCTCCCGCTGA 60.283 61.111 0.00 0.00 0.00 4.26
2968 6337 1.874345 GAACGTCTCCTCCCGCTGAA 61.874 60.000 0.00 0.00 0.00 3.02
2969 6338 1.258445 AACGTCTCCTCCCGCTGAAT 61.258 55.000 0.00 0.00 0.00 2.57
2970 6339 1.227089 CGTCTCCTCCCGCTGAATG 60.227 63.158 0.00 0.00 0.00 2.67
2971 6340 1.522580 GTCTCCTCCCGCTGAATGC 60.523 63.158 0.00 0.00 38.57 3.56
2988 6357 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
2989 6358 1.300620 CGCATCGCCGGAAATCCTA 60.301 57.895 5.05 0.00 0.00 2.94
2990 6359 0.878523 CGCATCGCCGGAAATCCTAA 60.879 55.000 5.05 0.00 0.00 2.69
2991 6360 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
2992 6361 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
2993 6362 2.293399 GCATCGCCGGAAATCCTAAAAT 59.707 45.455 5.05 0.00 0.00 1.82
2994 6363 3.500680 GCATCGCCGGAAATCCTAAAATA 59.499 43.478 5.05 0.00 0.00 1.40
2995 6364 4.023536 GCATCGCCGGAAATCCTAAAATAA 60.024 41.667 5.05 0.00 0.00 1.40
2996 6365 5.506649 GCATCGCCGGAAATCCTAAAATAAA 60.507 40.000 5.05 0.00 0.00 1.40
2997 6366 6.677913 CATCGCCGGAAATCCTAAAATAAAT 58.322 36.000 5.05 0.00 0.00 1.40
2998 6367 6.308371 TCGCCGGAAATCCTAAAATAAATC 57.692 37.500 5.05 0.00 0.00 2.17
2999 6368 5.239963 TCGCCGGAAATCCTAAAATAAATCC 59.760 40.000 5.05 0.00 0.00 3.01
3000 6369 5.009210 CGCCGGAAATCCTAAAATAAATCCA 59.991 40.000 5.05 0.00 0.00 3.41
3001 6370 6.447162 GCCGGAAATCCTAAAATAAATCCAG 58.553 40.000 5.05 0.00 0.00 3.86
3002 6371 6.516693 GCCGGAAATCCTAAAATAAATCCAGG 60.517 42.308 5.05 0.00 0.00 4.45
3003 6372 6.775629 CCGGAAATCCTAAAATAAATCCAGGA 59.224 38.462 0.00 0.00 39.63 3.86
3004 6373 7.286775 CCGGAAATCCTAAAATAAATCCAGGAA 59.713 37.037 0.00 0.00 38.82 3.36
3005 6374 8.860088 CGGAAATCCTAAAATAAATCCAGGAAT 58.140 33.333 0.00 0.00 38.82 3.01
3012 6381 9.410556 CCTAAAATAAATCCAGGAATAAATGCG 57.589 33.333 0.00 0.00 0.00 4.73
3015 6384 4.574599 AAATCCAGGAATAAATGCGAGC 57.425 40.909 0.00 0.00 0.00 5.03
3016 6385 2.708216 TCCAGGAATAAATGCGAGCA 57.292 45.000 0.00 0.00 0.00 4.26
3017 6386 2.288666 TCCAGGAATAAATGCGAGCAC 58.711 47.619 0.00 0.00 0.00 4.40
3018 6387 1.334869 CCAGGAATAAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
3019 6388 2.016318 CAGGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
3020 6389 2.032550 CAGGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
3021 6390 1.334869 GGAATAAATGCGAGCACCAGG 59.665 52.381 0.00 0.00 0.00 4.45
3022 6391 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
3023 6392 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
3024 6393 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
3025 6394 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
3026 6395 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
3027 6396 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
3028 6397 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
3029 6398 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
3030 6399 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
3031 6400 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
3032 6401 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
3047 6416 4.337474 CCTGATGGGCTGGGGATA 57.663 61.111 0.00 0.00 32.31 2.59
3048 6417 1.763770 CCTGATGGGCTGGGGATAC 59.236 63.158 0.00 0.00 32.31 2.24
3064 6433 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
3065 6434 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
3066 6435 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
3067 6436 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
3068 6437 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
3069 6438 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
3070 6439 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
3071 6440 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
3072 6441 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
3073 6442 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
3074 6443 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
3075 6444 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
3076 6445 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
3077 6446 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
3078 6447 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
3088 6457 3.353836 CCACAGGTTGGTTCGCGG 61.354 66.667 6.13 0.00 41.10 6.46
3089 6458 2.590575 CACAGGTTGGTTCGCGGT 60.591 61.111 6.13 0.00 0.00 5.68
3090 6459 2.184167 CACAGGTTGGTTCGCGGTT 61.184 57.895 6.13 0.00 0.00 4.44
3091 6460 1.890510 ACAGGTTGGTTCGCGGTTC 60.891 57.895 6.13 0.00 0.00 3.62
3092 6461 2.663852 AGGTTGGTTCGCGGTTCG 60.664 61.111 6.13 0.00 40.15 3.95
3093 6462 3.719144 GGTTGGTTCGCGGTTCGG 61.719 66.667 6.13 0.00 39.05 4.30
3094 6463 2.662527 GTTGGTTCGCGGTTCGGA 60.663 61.111 6.13 0.00 39.05 4.55
3095 6464 2.108566 TTGGTTCGCGGTTCGGAA 59.891 55.556 6.13 0.00 39.05 4.30
3096 6465 1.301874 TTGGTTCGCGGTTCGGAAT 60.302 52.632 6.13 0.00 39.05 3.01
3097 6466 1.293267 TTGGTTCGCGGTTCGGAATC 61.293 55.000 6.13 0.00 39.05 2.52
3098 6467 1.447314 GGTTCGCGGTTCGGAATCT 60.447 57.895 6.13 0.00 39.05 2.40
3140 6524 9.844790 TTGTTGATTCTGTTCTATATTGCAAAG 57.155 29.630 1.71 0.00 0.00 2.77
3153 6537 9.515226 TCTATATTGCAAAGTTTTTACAGGAGT 57.485 29.630 1.71 0.00 0.00 3.85
3162 6546 0.759959 TTTACAGGAGTTGCGGGACA 59.240 50.000 0.00 0.00 0.00 4.02
3169 6553 1.755380 GGAGTTGCGGGACACTATAGT 59.245 52.381 0.00 0.00 0.00 2.12
3179 6563 0.394762 ACACTATAGTCCGACGCCCA 60.395 55.000 1.26 0.00 0.00 5.36
3180 6564 0.959553 CACTATAGTCCGACGCCCAT 59.040 55.000 1.26 0.00 0.00 4.00
3191 6575 4.552365 CGCCCATGTCGCTCCCAT 62.552 66.667 0.00 0.00 0.00 4.00
3193 6577 2.903855 CCCATGTCGCTCCCATGC 60.904 66.667 0.00 0.00 38.67 4.06
3201 6587 4.899239 GCTCCCATGCGACTCGGG 62.899 72.222 0.00 0.00 41.76 5.14
3207 6593 4.143333 ATGCGACTCGGGGGAACG 62.143 66.667 0.00 0.00 0.00 3.95
3212 6598 1.805910 GACTCGGGGGAACGTAGTC 59.194 63.158 0.00 0.00 45.00 2.59
3213 6599 0.962356 GACTCGGGGGAACGTAGTCA 60.962 60.000 7.37 0.00 45.00 3.41
3218 6604 2.125793 GGGAACGTAGTCACCGGC 60.126 66.667 0.00 0.00 45.00 6.13
3244 6630 4.845307 CCCCCTCCCCTCCCCTTC 62.845 77.778 0.00 0.00 0.00 3.46
3291 6677 3.799755 GCTAAGCCCGCGTTGTGG 61.800 66.667 4.92 0.00 0.00 4.17
3437 6825 3.114390 CCCCTCCAGTCCTCCTCT 58.886 66.667 0.00 0.00 0.00 3.69
3457 6845 0.183492 TGGTTCCTGTTGCTGCTTCT 59.817 50.000 0.00 0.00 0.00 2.85
3467 6855 4.749310 CTGCTTCTGGCGACGGCT 62.749 66.667 22.70 0.00 45.43 5.52
3472 6860 3.626680 TTCTGGCGACGGCTCTTCG 62.627 63.158 22.70 6.01 39.81 3.79
3496 6884 3.716006 CAGTGTTCTGTGGCGGCG 61.716 66.667 0.51 0.51 36.97 6.46
3521 6909 1.884926 GCTTTCCGCCTCAGATCCG 60.885 63.158 0.00 0.00 0.00 4.18
3524 6912 1.956629 TTTCCGCCTCAGATCCGTCC 61.957 60.000 0.00 0.00 0.00 4.79
3557 6945 4.459089 GGGTGGCAGCTCTCCGAC 62.459 72.222 17.16 0.00 0.00 4.79
3558 6946 3.386237 GGTGGCAGCTCTCCGACT 61.386 66.667 9.90 0.00 0.00 4.18
3559 6947 2.183046 GTGGCAGCTCTCCGACTC 59.817 66.667 0.00 0.00 0.00 3.36
3560 6948 3.071206 TGGCAGCTCTCCGACTCC 61.071 66.667 0.00 0.00 0.00 3.85
3561 6949 4.200283 GGCAGCTCTCCGACTCCG 62.200 72.222 0.00 0.00 0.00 4.63
3562 6950 3.134792 GCAGCTCTCCGACTCCGA 61.135 66.667 0.00 0.00 38.22 4.55
3563 6951 2.795297 CAGCTCTCCGACTCCGAC 59.205 66.667 0.00 0.00 38.22 4.79
3567 6955 3.640257 CTCTCCGACTCCGACCCCA 62.640 68.421 0.00 0.00 38.22 4.96
3572 6960 2.363147 GACTCCGACCCCAGCTCT 60.363 66.667 0.00 0.00 0.00 4.09
3662 7057 4.265056 GGGTGTTGGGTCTGGCGT 62.265 66.667 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.253327 AGACCAAATTCCCCGAGAGC 59.747 55.000 0.00 0.00 0.00 4.09
7 8 2.514803 AGAACAAGACCAAATTCCCCG 58.485 47.619 0.00 0.00 0.00 5.73
67 68 9.132521 CTGCAACAACTAAAGGAAAATATCTTG 57.867 33.333 0.00 0.00 0.00 3.02
71 72 8.635765 TCTCTGCAACAACTAAAGGAAAATAT 57.364 30.769 0.00 0.00 0.00 1.28
73 74 6.772716 TCTCTCTGCAACAACTAAAGGAAAAT 59.227 34.615 0.00 0.00 0.00 1.82
75 76 5.680619 TCTCTCTGCAACAACTAAAGGAAA 58.319 37.500 0.00 0.00 0.00 3.13
76 77 5.290493 TCTCTCTGCAACAACTAAAGGAA 57.710 39.130 0.00 0.00 0.00 3.36
77 78 4.955811 TCTCTCTGCAACAACTAAAGGA 57.044 40.909 0.00 0.00 0.00 3.36
78 79 6.376978 CAATTCTCTCTGCAACAACTAAAGG 58.623 40.000 0.00 0.00 0.00 3.11
84 85 3.911661 AGCAATTCTCTCTGCAACAAC 57.088 42.857 0.00 0.00 41.17 3.32
91 92 4.867047 ACGATGTACAAGCAATTCTCTCTG 59.133 41.667 0.00 0.00 0.00 3.35
95 96 6.170675 AGAAACGATGTACAAGCAATTCTC 57.829 37.500 0.00 0.00 0.00 2.87
109 110 8.506140 AATTTGTCAATGTACAAGAAACGATG 57.494 30.769 0.00 0.00 40.29 3.84
110 111 9.825972 CTAATTTGTCAATGTACAAGAAACGAT 57.174 29.630 0.00 0.00 40.29 3.73
117 118 7.305474 GTGACCCTAATTTGTCAATGTACAAG 58.695 38.462 0.00 0.00 42.67 3.16
118 119 6.207810 GGTGACCCTAATTTGTCAATGTACAA 59.792 38.462 0.00 0.00 42.67 2.41
119 120 5.708230 GGTGACCCTAATTTGTCAATGTACA 59.292 40.000 0.00 0.00 42.67 2.90
120 121 5.708230 TGGTGACCCTAATTTGTCAATGTAC 59.292 40.000 0.00 0.00 42.67 2.90
124 125 5.278758 CGTTTGGTGACCCTAATTTGTCAAT 60.279 40.000 0.00 0.00 42.67 2.57
125 126 4.036971 CGTTTGGTGACCCTAATTTGTCAA 59.963 41.667 0.00 0.00 42.67 3.18
129 130 4.839668 TTCGTTTGGTGACCCTAATTTG 57.160 40.909 0.00 0.00 0.00 2.32
135 136 4.028993 ACATATTTCGTTTGGTGACCCT 57.971 40.909 0.00 0.00 0.00 4.34
145 146 8.019094 GGTTTGCAGTAAGTAACATATTTCGTT 58.981 33.333 0.00 0.00 0.00 3.85
146 147 7.389607 AGGTTTGCAGTAAGTAACATATTTCGT 59.610 33.333 0.00 0.00 0.00 3.85
148 149 8.182227 GGAGGTTTGCAGTAAGTAACATATTTC 58.818 37.037 0.00 0.00 0.00 2.17
150 151 6.315393 CGGAGGTTTGCAGTAAGTAACATATT 59.685 38.462 0.00 0.00 0.00 1.28
155 156 3.396560 ACGGAGGTTTGCAGTAAGTAAC 58.603 45.455 0.00 0.00 0.00 2.50
158 159 2.631545 AGTACGGAGGTTTGCAGTAAGT 59.368 45.455 0.00 0.00 0.00 2.24
174 175 5.996669 AAACTTGTTAGGTCCAAAGTACG 57.003 39.130 0.00 0.00 0.00 3.67
175 176 8.611654 TCATAAACTTGTTAGGTCCAAAGTAC 57.388 34.615 0.00 0.00 0.00 2.73
182 183 4.941873 CCCACTCATAAACTTGTTAGGTCC 59.058 45.833 0.00 0.00 0.00 4.46
192 193 4.220602 GCCAATGTTTCCCACTCATAAACT 59.779 41.667 0.00 0.00 34.84 2.66
193 194 4.021544 TGCCAATGTTTCCCACTCATAAAC 60.022 41.667 0.00 0.00 34.45 2.01
203 204 1.067516 CATCCGATGCCAATGTTTCCC 59.932 52.381 0.00 0.00 0.00 3.97
208 209 1.152694 CCCCATCCGATGCCAATGT 60.153 57.895 2.53 0.00 0.00 2.71
218 219 1.352622 TGATTCCCTTCCCCCATCCG 61.353 60.000 0.00 0.00 0.00 4.18
219 220 1.076187 GATGATTCCCTTCCCCCATCC 59.924 57.143 0.00 0.00 0.00 3.51
254 255 5.114081 ACCCGAATTGTAGTTTATTCCTCG 58.886 41.667 0.00 0.00 0.00 4.63
256 257 7.052248 CCTAACCCGAATTGTAGTTTATTCCT 58.948 38.462 0.00 0.00 0.00 3.36
272 273 1.002773 GCACCTTTCTTCCTAACCCGA 59.997 52.381 0.00 0.00 0.00 5.14
298 299 4.920927 CCGTTCTCTTCTCACTTCTTTCTC 59.079 45.833 0.00 0.00 0.00 2.87
350 351 8.188139 CGTGTTAGCCATGTTTAGGAATTTTAT 58.812 33.333 0.00 0.00 0.00 1.40
367 368 1.528161 GGTTGTGTACACGTGTTAGCC 59.472 52.381 28.55 17.30 0.00 3.93
408 409 6.159575 TCTGATGGGTTGGGAAAATCACTATA 59.840 38.462 0.00 0.00 0.00 1.31
419 420 1.741028 TGAACTCTGATGGGTTGGGA 58.259 50.000 0.00 0.00 0.00 4.37
442 443 6.758254 TGTGAACATCAATGACAAGTCTAGA 58.242 36.000 1.53 0.00 0.00 2.43
452 453 7.287512 TCCAGAAAAATGTGAACATCAATGA 57.712 32.000 0.00 0.00 35.10 2.57
464 465 6.168389 GCCTGAAATGAATCCAGAAAAATGT 58.832 36.000 0.00 0.00 0.00 2.71
500 502 3.056749 ACATCTCCTTCCAGTGAACGTAC 60.057 47.826 0.00 0.00 0.00 3.67
579 581 1.202698 GCACCTTTGAGAGACTGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
580 582 1.071385 AGCACCTTTGAGAGACTGTGG 59.929 52.381 0.00 0.00 0.00 4.17
582 584 1.071385 CCAGCACCTTTGAGAGACTGT 59.929 52.381 0.00 0.00 0.00 3.55
623 626 2.242882 ACACTCACCCCTATAACCGT 57.757 50.000 0.00 0.00 0.00 4.83
628 631 8.621073 ACATATACAGATACACTCACCCCTATA 58.379 37.037 0.00 0.00 0.00 1.31
725 734 3.195396 TGCAATTGCCTAACTTTGGATCC 59.805 43.478 26.94 4.20 41.18 3.36
769 778 4.313020 ACATGGAGCATCTTCCTTTCTT 57.687 40.909 0.00 0.00 38.12 2.52
792 801 8.830915 ATCGTGGTAAGATCAGGATAGATTAT 57.169 34.615 0.00 0.00 37.78 1.28
999 1211 4.207955 CTGCACTACTATCTGGGAGTGTA 58.792 47.826 7.63 2.65 41.14 2.90
1054 1266 1.936547 GCTACCATTGCTCTACTGCAC 59.063 52.381 0.00 0.00 43.20 4.57
1280 1492 3.367498 GCGATGGTGATATCTCCCTGTAC 60.367 52.174 18.83 0.52 0.00 2.90
1357 1572 0.252103 ACCCGGAAGAAGCTCCACTA 60.252 55.000 0.73 0.00 34.91 2.74
1361 1576 2.711978 AATTACCCGGAAGAAGCTCC 57.288 50.000 0.73 0.00 0.00 4.70
1369 1584 6.433404 TGTTTTGCATACTTAATTACCCGGAA 59.567 34.615 0.73 0.00 0.00 4.30
1388 1728 5.277601 ACCTACGAATCGAACATGTTTTG 57.722 39.130 13.36 8.89 0.00 2.44
1399 1739 5.803461 TGAGATGTTGTTAACCTACGAATCG 59.197 40.000 0.00 0.00 0.00 3.34
1431 1771 6.546403 TGTAACAGTGCACTAAACCCATAAAA 59.454 34.615 21.20 0.00 0.00 1.52
1446 1786 1.308998 AGCCACAAGTGTAACAGTGC 58.691 50.000 0.00 0.00 41.74 4.40
1791 2239 3.706373 ACCTTGGCGCGGATGTCT 61.706 61.111 8.83 0.00 0.00 3.41
1824 2272 4.681978 GCGCAAGAGACGGTGGGT 62.682 66.667 0.30 0.00 43.02 4.51
1836 2284 3.507924 GCCATGATGTCGGCGCAA 61.508 61.111 10.83 0.00 38.82 4.85
2022 3919 0.328258 AGTGGCACATGGTAGGGTTC 59.672 55.000 21.41 0.00 44.52 3.62
2051 3948 4.742201 GCGGGCTCGAAGCTGTCA 62.742 66.667 12.03 0.00 41.99 3.58
2255 4324 3.194755 TGCAGTTATCTTGTAGCCTTCGA 59.805 43.478 0.00 0.00 0.00 3.71
2294 4363 1.100510 TAACATCGAGGTCCTGACGG 58.899 55.000 1.92 0.00 0.00 4.79
2384 4819 1.372683 GTTGAGGAGGAGCTGCACA 59.627 57.895 8.35 0.00 0.00 4.57
2403 4838 2.092753 TCACGTATCCTCGGGTAGTCTT 60.093 50.000 0.00 0.00 35.58 3.01
2408 4843 1.016627 CGTTCACGTATCCTCGGGTA 58.983 55.000 0.00 0.00 35.58 3.69
2417 4852 1.065358 CGGCAAAGTCGTTCACGTAT 58.935 50.000 0.00 0.00 40.80 3.06
2616 5059 9.958180 TGTGATCTCCTCTTATTTTGAACATAA 57.042 29.630 0.00 0.00 0.00 1.90
2620 5063 9.606631 ACTATGTGATCTCCTCTTATTTTGAAC 57.393 33.333 0.00 0.00 0.00 3.18
2672 5127 7.490657 TGCTACTCCTTCTTATTACAAGGAA 57.509 36.000 2.19 0.00 46.14 3.36
2688 5143 0.757188 TAGAGCCAGGCTGCTACTCC 60.757 60.000 22.26 1.53 42.95 3.85
2689 5144 0.387565 GTAGAGCCAGGCTGCTACTC 59.612 60.000 27.50 17.83 42.95 2.59
2690 5145 1.045911 GGTAGAGCCAGGCTGCTACT 61.046 60.000 30.31 21.14 42.95 2.57
2691 5146 1.443828 GGTAGAGCCAGGCTGCTAC 59.556 63.158 27.17 27.17 42.95 3.58
2698 5153 2.104963 GTGATAAAGGGGTAGAGCCAGG 59.895 54.545 0.00 0.00 39.65 4.45
2745 5201 3.686726 CCTCCAACTCTGATACAGTTTGC 59.313 47.826 0.00 0.00 31.40 3.68
2785 6154 7.960738 GCTTGCGTCTATACTAATGTTCAAAAA 59.039 33.333 0.00 0.00 0.00 1.94
2786 6155 7.413657 GGCTTGCGTCTATACTAATGTTCAAAA 60.414 37.037 0.00 0.00 0.00 2.44
2787 6156 6.036735 GGCTTGCGTCTATACTAATGTTCAAA 59.963 38.462 0.00 0.00 0.00 2.69
2788 6157 5.522460 GGCTTGCGTCTATACTAATGTTCAA 59.478 40.000 0.00 0.00 0.00 2.69
2789 6158 5.047847 GGCTTGCGTCTATACTAATGTTCA 58.952 41.667 0.00 0.00 0.00 3.18
2790 6159 4.448060 GGGCTTGCGTCTATACTAATGTTC 59.552 45.833 0.00 0.00 0.00 3.18
2791 6160 4.101119 AGGGCTTGCGTCTATACTAATGTT 59.899 41.667 0.00 0.00 0.00 2.71
2792 6161 3.641906 AGGGCTTGCGTCTATACTAATGT 59.358 43.478 0.00 0.00 0.00 2.71
2793 6162 4.238514 GAGGGCTTGCGTCTATACTAATG 58.761 47.826 0.00 0.00 0.00 1.90
2794 6163 3.057456 CGAGGGCTTGCGTCTATACTAAT 60.057 47.826 0.00 0.00 0.00 1.73
2795 6164 2.292569 CGAGGGCTTGCGTCTATACTAA 59.707 50.000 0.00 0.00 0.00 2.24
2796 6165 1.878088 CGAGGGCTTGCGTCTATACTA 59.122 52.381 0.00 0.00 0.00 1.82
2797 6166 0.669077 CGAGGGCTTGCGTCTATACT 59.331 55.000 0.00 0.00 0.00 2.12
2798 6167 0.384669 ACGAGGGCTTGCGTCTATAC 59.615 55.000 0.00 0.00 35.59 1.47
2799 6168 1.971481 TACGAGGGCTTGCGTCTATA 58.029 50.000 0.00 0.00 41.49 1.31
2800 6169 1.329256 ATACGAGGGCTTGCGTCTAT 58.671 50.000 0.00 0.00 41.49 1.98
2801 6170 1.605710 GTATACGAGGGCTTGCGTCTA 59.394 52.381 0.00 0.00 41.49 2.59
2802 6171 0.384669 GTATACGAGGGCTTGCGTCT 59.615 55.000 0.00 0.00 41.49 4.18
2803 6172 0.101759 TGTATACGAGGGCTTGCGTC 59.898 55.000 0.00 0.00 41.49 5.19
2804 6173 0.179119 GTGTATACGAGGGCTTGCGT 60.179 55.000 0.00 0.00 43.86 5.24
2805 6174 2.589890 GTGTATACGAGGGCTTGCG 58.410 57.895 0.00 0.00 0.00 4.85
2816 6185 2.466571 GTGAGTGTATGCGCGTGTATAC 59.533 50.000 24.72 24.72 42.15 1.47
2817 6186 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
2818 6187 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
2819 6188 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
2820 6189 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
2821 6190 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
2822 6191 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
2823 6192 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
2824 6193 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
2825 6194 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
2826 6195 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
2827 6196 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
2828 6197 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
2829 6198 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
2830 6199 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
2831 6200 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
2832 6201 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
2833 6202 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
2834 6203 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
2835 6204 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
2836 6205 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
2837 6206 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
2838 6207 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
2839 6208 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
2840 6209 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
2841 6210 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2842 6211 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
2843 6212 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
2844 6213 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
2845 6214 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2848 6217 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
2849 6218 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
2850 6219 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
2851 6220 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
2852 6221 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
2853 6222 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
2854 6223 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
2855 6224 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
2856 6225 2.330216 ACTCATAGGGATAGGGTGTGC 58.670 52.381 0.00 0.00 0.00 4.57
2857 6226 5.584913 AGATACTCATAGGGATAGGGTGTG 58.415 45.833 0.00 0.00 0.00 3.82
2858 6227 5.281821 GGAGATACTCATAGGGATAGGGTGT 60.282 48.000 0.00 0.00 31.08 4.16
2859 6228 5.205056 GGAGATACTCATAGGGATAGGGTG 58.795 50.000 0.00 0.00 31.08 4.61
2860 6229 4.079672 CGGAGATACTCATAGGGATAGGGT 60.080 50.000 0.00 0.00 31.08 4.34
2861 6230 4.166337 TCGGAGATACTCATAGGGATAGGG 59.834 50.000 0.00 0.00 31.08 3.53
2862 6231 5.375283 TCGGAGATACTCATAGGGATAGG 57.625 47.826 0.00 0.00 31.08 2.57
2863 6232 7.066525 GTCTTTCGGAGATACTCATAGGGATAG 59.933 44.444 0.00 0.00 36.61 2.08
2864 6233 6.885376 GTCTTTCGGAGATACTCATAGGGATA 59.115 42.308 0.00 0.00 36.61 2.59
2865 6234 5.712917 GTCTTTCGGAGATACTCATAGGGAT 59.287 44.000 0.00 0.00 36.61 3.85
2866 6235 5.071370 GTCTTTCGGAGATACTCATAGGGA 58.929 45.833 0.00 0.00 36.61 4.20
2867 6236 5.048364 CAGTCTTTCGGAGATACTCATAGGG 60.048 48.000 0.00 0.00 36.61 3.53
2868 6237 5.765677 TCAGTCTTTCGGAGATACTCATAGG 59.234 44.000 0.00 0.00 36.61 2.57
2869 6238 6.567701 GCTCAGTCTTTCGGAGATACTCATAG 60.568 46.154 0.00 0.00 40.01 2.23
2870 6239 5.239744 GCTCAGTCTTTCGGAGATACTCATA 59.760 44.000 0.00 0.00 40.01 2.15
2871 6240 4.037446 GCTCAGTCTTTCGGAGATACTCAT 59.963 45.833 0.00 0.00 40.01 2.90
2872 6241 3.378742 GCTCAGTCTTTCGGAGATACTCA 59.621 47.826 0.00 0.00 40.01 3.41
2873 6242 3.243267 GGCTCAGTCTTTCGGAGATACTC 60.243 52.174 0.00 0.00 40.01 2.59
2874 6243 2.691011 GGCTCAGTCTTTCGGAGATACT 59.309 50.000 0.00 0.00 40.01 2.12
2875 6244 2.541999 CGGCTCAGTCTTTCGGAGATAC 60.542 54.545 0.00 0.00 40.01 2.24
2876 6245 1.676529 CGGCTCAGTCTTTCGGAGATA 59.323 52.381 0.00 0.00 40.01 1.98
2877 6246 0.457851 CGGCTCAGTCTTTCGGAGAT 59.542 55.000 0.00 0.00 40.01 2.75
2878 6247 1.595993 CCGGCTCAGTCTTTCGGAGA 61.596 60.000 0.00 0.00 42.94 3.71
2879 6248 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
2880 6249 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
2881 6250 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
2882 6251 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
2883 6252 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
2884 6253 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
2885 6254 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
2886 6255 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
2887 6256 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
2888 6257 1.274728 GAGATGATATGCCGGCTCAGT 59.725 52.381 29.70 14.17 0.00 3.41
2889 6258 1.274447 TGAGATGATATGCCGGCTCAG 59.726 52.381 29.70 0.00 0.00 3.35
2890 6259 1.341080 TGAGATGATATGCCGGCTCA 58.659 50.000 29.70 23.34 0.00 4.26
2891 6260 2.028658 TCTTGAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
2892 6261 1.973515 TCTTGAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
2893 6262 2.462456 TCTTGAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
2894 6263 5.062683 CGTAAATCTTGAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
2895 6264 5.863935 TCGTAAATCTTGAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
2896 6265 7.386299 ACTTCGTAAATCTTGAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
2897 6266 8.304202 ACTTCGTAAATCTTGAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
2898 6267 9.468532 TGACTTCGTAAATCTTGAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
2899 6268 9.469807 GTGACTTCGTAAATCTTGAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
2900 6269 7.921214 GGTGACTTCGTAAATCTTGAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
2901 6270 6.758886 GGTGACTTCGTAAATCTTGAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
2902 6271 6.100004 GGTGACTTCGTAAATCTTGAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
2903 6272 5.004821 CGGTGACTTCGTAAATCTTGAGATG 59.995 44.000 0.00 0.00 34.49 2.90
2904 6273 5.103000 CGGTGACTTCGTAAATCTTGAGAT 58.897 41.667 0.00 0.00 36.07 2.75
2905 6274 4.022589 ACGGTGACTTCGTAAATCTTGAGA 60.023 41.667 0.00 0.00 39.22 3.27
2906 6275 4.235360 ACGGTGACTTCGTAAATCTTGAG 58.765 43.478 0.00 0.00 39.22 3.02
2907 6276 4.247267 ACGGTGACTTCGTAAATCTTGA 57.753 40.909 0.00 0.00 39.22 3.02
2908 6277 4.561606 CCTACGGTGACTTCGTAAATCTTG 59.438 45.833 0.00 0.00 41.62 3.02
2909 6278 4.741342 CCTACGGTGACTTCGTAAATCTT 58.259 43.478 0.00 0.00 41.62 2.40
2910 6279 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
2911 6280 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
2912 6281 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
2913 6282 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
2914 6283 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
2915 6284 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
2916 6285 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
2917 6286 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
2918 6287 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
2919 6288 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
2920 6289 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
2921 6290 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
2922 6291 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
2923 6292 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
2924 6293 3.437795 CGACGAGGTGCCTACGGT 61.438 66.667 12.22 3.01 0.00 4.83
2925 6294 3.392595 GACGACGAGGTGCCTACGG 62.393 68.421 0.00 1.18 0.00 4.02
2926 6295 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
2927 6296 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
2928 6297 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
2949 6318 1.874345 TTCAGCGGGAGGAGACGTTC 61.874 60.000 0.00 0.00 0.00 3.95
2950 6319 1.258445 ATTCAGCGGGAGGAGACGTT 61.258 55.000 0.00 0.00 0.00 3.99
2951 6320 1.682684 ATTCAGCGGGAGGAGACGT 60.683 57.895 0.00 0.00 0.00 4.34
2952 6321 1.227089 CATTCAGCGGGAGGAGACG 60.227 63.158 0.00 0.00 0.00 4.18
2953 6322 1.522580 GCATTCAGCGGGAGGAGAC 60.523 63.158 0.00 0.00 0.00 3.36
2954 6323 2.903357 GCATTCAGCGGGAGGAGA 59.097 61.111 0.00 0.00 0.00 3.71
2971 6340 0.878523 TTAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
2972 6341 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
2973 6342 5.682943 TTATTTTAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
2974 6343 6.072119 GGATTTATTTTAGGATTTCCGGCGAT 60.072 38.462 9.30 0.00 42.08 4.58
2975 6344 5.239963 GGATTTATTTTAGGATTTCCGGCGA 59.760 40.000 9.30 0.00 42.08 5.54
2976 6345 5.009210 TGGATTTATTTTAGGATTTCCGGCG 59.991 40.000 0.00 0.00 42.08 6.46
2977 6346 6.399639 TGGATTTATTTTAGGATTTCCGGC 57.600 37.500 0.00 0.00 42.08 6.13
2978 6347 6.775629 TCCTGGATTTATTTTAGGATTTCCGG 59.224 38.462 0.00 0.00 42.08 5.14
2979 6348 7.817418 TCCTGGATTTATTTTAGGATTTCCG 57.183 36.000 0.00 0.00 42.08 4.30
2986 6355 9.410556 CGCATTTATTCCTGGATTTATTTTAGG 57.589 33.333 0.00 0.00 0.00 2.69
2989 6358 7.653311 GCTCGCATTTATTCCTGGATTTATTTT 59.347 33.333 0.00 0.00 0.00 1.82
2990 6359 7.147976 GCTCGCATTTATTCCTGGATTTATTT 58.852 34.615 0.00 0.00 0.00 1.40
2991 6360 6.265196 TGCTCGCATTTATTCCTGGATTTATT 59.735 34.615 0.00 0.00 0.00 1.40
2992 6361 5.769662 TGCTCGCATTTATTCCTGGATTTAT 59.230 36.000 0.00 0.00 0.00 1.40
2993 6362 5.008613 GTGCTCGCATTTATTCCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
2994 6363 3.953612 TGCTCGCATTTATTCCTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
2995 6364 3.316308 GTGCTCGCATTTATTCCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
2996 6365 2.880890 GTGCTCGCATTTATTCCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
2997 6366 2.288666 GTGCTCGCATTTATTCCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
2998 6367 1.334869 GGTGCTCGCATTTATTCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
2999 6368 2.016318 TGGTGCTCGCATTTATTCCTG 58.984 47.619 0.00 0.00 0.00 3.86
3000 6369 2.292267 CTGGTGCTCGCATTTATTCCT 58.708 47.619 0.00 0.00 0.00 3.36
3001 6370 1.334869 CCTGGTGCTCGCATTTATTCC 59.665 52.381 0.00 0.00 0.00 3.01
3002 6371 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
3003 6372 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
3004 6373 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
3005 6374 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
3006 6375 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
3007 6376 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
3008 6377 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
3009 6378 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
3010 6379 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
3011 6380 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
3012 6381 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
3013 6382 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
3014 6383 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
3030 6399 1.763770 GTATCCCCAGCCCATCAGG 59.236 63.158 0.00 0.00 39.47 3.86
3031 6400 1.061905 TGGTATCCCCAGCCCATCAG 61.062 60.000 0.00 0.00 38.72 2.90
3032 6401 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
3033 6402 1.352622 TGTGGTATCCCCAGCCCATC 61.353 60.000 0.00 0.00 46.45 3.51
3034 6403 1.308657 TGTGGTATCCCCAGCCCAT 60.309 57.895 0.00 0.00 46.45 4.00
3035 6404 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
3036 6405 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
3037 6406 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
3038 6407 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
3043 6412 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
3044 6413 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
3045 6414 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
3046 6415 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
3047 6416 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
3048 6417 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
3049 6418 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
3050 6419 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
3051 6420 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
3053 6422 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
3054 6423 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
3055 6424 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
3056 6425 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
3057 6426 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
3058 6427 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
3059 6428 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
3072 6441 2.113131 GAACCGCGAACCAACCTGTG 62.113 60.000 8.23 0.00 0.00 3.66
3073 6442 1.890510 GAACCGCGAACCAACCTGT 60.891 57.895 8.23 0.00 0.00 4.00
3074 6443 2.943653 GAACCGCGAACCAACCTG 59.056 61.111 8.23 0.00 0.00 4.00
3075 6444 2.663852 CGAACCGCGAACCAACCT 60.664 61.111 8.23 0.00 44.57 3.50
3076 6445 3.719144 CCGAACCGCGAACCAACC 61.719 66.667 8.23 0.00 44.57 3.77
3077 6446 1.571215 ATTCCGAACCGCGAACCAAC 61.571 55.000 8.23 0.00 44.57 3.77
3078 6447 1.293267 GATTCCGAACCGCGAACCAA 61.293 55.000 8.23 0.00 44.57 3.67
3079 6448 1.738830 GATTCCGAACCGCGAACCA 60.739 57.895 8.23 0.00 44.57 3.67
3080 6449 1.017701 AAGATTCCGAACCGCGAACC 61.018 55.000 8.23 0.00 44.57 3.62
3081 6450 1.632422 TAAGATTCCGAACCGCGAAC 58.368 50.000 8.23 0.00 44.57 3.95
3082 6451 2.589798 ATAAGATTCCGAACCGCGAA 57.410 45.000 8.23 0.00 44.57 4.70
3083 6452 2.589798 AATAAGATTCCGAACCGCGA 57.410 45.000 8.23 0.00 44.57 5.87
3084 6453 3.985279 TGATAATAAGATTCCGAACCGCG 59.015 43.478 0.00 0.00 40.47 6.46
3085 6454 5.917541 TTGATAATAAGATTCCGAACCGC 57.082 39.130 0.00 0.00 0.00 5.68
3140 6524 2.031420 GTCCCGCAACTCCTGTAAAAAC 60.031 50.000 0.00 0.00 0.00 2.43
3162 6546 0.959553 CATGGGCGTCGGACTATAGT 59.040 55.000 4.68 4.68 0.00 2.12
3175 6559 2.903855 CATGGGAGCGACATGGGC 60.904 66.667 0.00 0.00 41.46 5.36
3190 6574 4.143333 CGTTCCCCCGAGTCGCAT 62.143 66.667 7.12 0.00 0.00 4.73
3193 6577 1.986575 GACTACGTTCCCCCGAGTCG 61.987 65.000 5.29 5.29 30.98 4.18
3195 6579 1.075482 TGACTACGTTCCCCCGAGT 59.925 57.895 0.00 0.00 0.00 4.18
3201 6587 2.125793 GCCGGTGACTACGTTCCC 60.126 66.667 1.90 0.00 0.00 3.97
3391 6779 0.681243 GGATCCAAGGACAAGGCCAC 60.681 60.000 6.95 0.00 0.00 5.01
3421 6809 0.980231 CCAAGAGGAGGACTGGAGGG 60.980 65.000 0.00 0.00 36.89 4.30
3437 6825 1.032014 GAAGCAGCAACAGGAACCAA 58.968 50.000 0.00 0.00 0.00 3.67
3467 6855 1.827399 GAACACTGGGAGCCCGAAGA 61.827 60.000 0.29 0.00 39.42 2.87
3472 6860 1.302832 CACAGAACACTGGGAGCCC 60.303 63.158 0.00 0.00 37.24 5.19
3480 6868 4.988598 CCGCCGCCACAGAACACT 62.989 66.667 0.00 0.00 0.00 3.55
3521 6909 2.046285 CATCCCAACCAAGCCGGAC 61.046 63.158 5.05 0.00 38.63 4.79
3524 6912 2.755469 CCCATCCCAACCAAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
3550 6938 3.640257 CTGGGGTCGGAGTCGGAGA 62.640 68.421 0.00 0.00 36.95 3.71
3555 6943 2.363147 AGAGCTGGGGTCGGAGTC 60.363 66.667 0.00 0.00 35.00 3.36
3557 6945 1.760086 ATGAGAGCTGGGGTCGGAG 60.760 63.158 0.00 0.00 35.00 4.63
3558 6946 2.060383 CATGAGAGCTGGGGTCGGA 61.060 63.158 0.00 0.00 35.00 4.55
3559 6947 2.503061 CATGAGAGCTGGGGTCGG 59.497 66.667 0.00 0.00 35.00 4.79
3560 6948 2.202987 GCATGAGAGCTGGGGTCG 60.203 66.667 0.00 0.00 35.00 4.79
3561 6949 0.534652 GATGCATGAGAGCTGGGGTC 60.535 60.000 2.46 0.00 34.99 4.46
3562 6950 1.530771 GATGCATGAGAGCTGGGGT 59.469 57.895 2.46 0.00 34.99 4.95
3563 6951 1.597302 CGATGCATGAGAGCTGGGG 60.597 63.158 2.46 0.00 34.99 4.96
3567 6955 1.881709 CGCACGATGCATGAGAGCT 60.882 57.895 2.46 0.00 45.36 4.09
3572 6960 2.436469 AAGCCGCACGATGCATGA 60.436 55.556 2.46 0.00 45.36 3.07
3613 7001 1.988956 CAGCCACCAGAGGAGCTCT 60.989 63.158 14.64 0.00 42.11 4.09
3650 7045 4.947147 GCCACACGCCAGACCCAA 62.947 66.667 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.