Multiple sequence alignment - TraesCS2D01G583600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G583600 chr2D 100.000 9927 0 0 1 9927 643760754 643770680 0.000000e+00 18332.0
1 TraesCS2D01G583600 chr2D 85.258 1472 206 5 7472 8941 643743974 643745436 0.000000e+00 1506.0
2 TraesCS2D01G583600 chr2D 85.421 535 59 9 940 1467 643737445 643737967 1.130000e-148 538.0
3 TraesCS2D01G583600 chr2D 97.696 217 5 0 7239 7455 284559957 284560173 3.390000e-99 374.0
4 TraesCS2D01G583600 chr2D 96.789 218 7 0 7238 7455 204855800 204856017 2.040000e-96 364.0
5 TraesCS2D01G583600 chr2D 91.064 235 16 3 1237 1467 643662191 643661958 7.490000e-81 313.0
6 TraesCS2D01G583600 chr2D 88.745 231 23 3 1245 1473 639680202 639679973 7.590000e-71 279.0
7 TraesCS2D01G583600 chr2D 92.562 121 6 3 1975 2093 636776236 636776355 4.770000e-38 171.0
8 TraesCS2D01G583600 chr2D 95.238 105 3 2 1993 2095 445894980 445894876 2.220000e-36 165.0
9 TraesCS2D01G583600 chr2D 93.694 111 6 1 1984 2094 650774999 650775108 2.220000e-36 165.0
10 TraesCS2D01G583600 chr2D 73.455 275 62 8 3064 3330 32343989 32344260 1.060000e-14 93.5
11 TraesCS2D01G583600 chr2D 73.239 213 48 7 3171 3380 480514085 480514291 1.790000e-07 69.4
12 TraesCS2D01G583600 chr2A 94.202 5209 250 28 2063 7240 768603334 768608521 0.000000e+00 7899.0
13 TraesCS2D01G583600 chr2A 91.704 1350 35 12 1 1280 768601244 768602586 0.000000e+00 1801.0
14 TraesCS2D01G583600 chr2A 95.624 1074 38 5 8196 9269 768620097 768621161 0.000000e+00 1714.0
15 TraesCS2D01G583600 chr2A 85.108 1437 209 5 7507 8941 768574189 768575622 0.000000e+00 1463.0
16 TraesCS2D01G583600 chr2A 92.829 767 20 8 1298 2034 768602574 768603335 0.000000e+00 1079.0
17 TraesCS2D01G583600 chr2A 97.381 611 16 0 7588 8198 768608951 768609561 0.000000e+00 1040.0
18 TraesCS2D01G583600 chr2A 87.013 616 42 15 9258 9861 768622505 768623094 0.000000e+00 660.0
19 TraesCS2D01G583600 chr2A 76.485 1212 245 28 7711 8914 765054107 765052928 3.040000e-174 623.0
20 TraesCS2D01G583600 chr2A 86.542 535 53 9 940 1467 768571205 768571727 1.120000e-158 571.0
21 TraesCS2D01G583600 chr2A 79.952 419 62 10 1049 1467 768552824 768553220 1.260000e-73 289.0
22 TraesCS2D01G583600 chr2A 88.393 224 24 2 1245 1467 765056181 765055959 1.640000e-67 268.0
23 TraesCS2D01G583600 chr2A 84.914 232 33 2 1237 1467 768469332 768469102 6.000000e-57 233.0
24 TraesCS2D01G583600 chr2A 93.985 133 7 1 7457 7588 768608521 768608653 6.080000e-47 200.0
25 TraesCS2D01G583600 chr2A 82.700 237 22 6 9670 9897 768623102 768623328 1.020000e-44 193.0
26 TraesCS2D01G583600 chr2A 81.781 247 24 10 1608 1837 768571842 768572084 4.730000e-43 187.0
27 TraesCS2D01G583600 chr2A 72.549 357 79 14 3039 3380 169336995 169337347 2.280000e-16 99.0
28 TraesCS2D01G583600 chr2A 74.138 232 42 15 542 761 713537566 713537791 8.270000e-11 80.5
29 TraesCS2D01G583600 chr2B 91.637 2559 179 18 4059 6604 793358916 793356380 0.000000e+00 3507.0
30 TraesCS2D01G583600 chr2B 89.093 2668 188 42 1476 4072 793363239 793360604 0.000000e+00 3219.0
31 TraesCS2D01G583600 chr2B 95.241 1681 76 2 7460 9137 793354470 793352791 0.000000e+00 2658.0
32 TraesCS2D01G583600 chr2B 85.364 1387 197 6 7546 8929 793376790 793375407 0.000000e+00 1432.0
33 TraesCS2D01G583600 chr2B 92.593 729 22 17 9185 9913 793351596 793350900 0.000000e+00 1018.0
34 TraesCS2D01G583600 chr2B 91.354 613 35 6 6637 7240 793355076 793354473 0.000000e+00 822.0
35 TraesCS2D01G583600 chr2B 88.658 529 37 6 940 1468 793368081 793367576 3.040000e-174 623.0
36 TraesCS2D01G583600 chr2B 86.406 537 54 15 940 1467 793380440 793379914 4.020000e-158 569.0
37 TraesCS2D01G583600 chr2B 75.931 698 162 6 8183 8877 793416393 793415699 4.410000e-93 353.0
38 TraesCS2D01G583600 chr2B 79.132 484 66 28 1003 1467 798578406 798578873 1.620000e-77 302.0
39 TraesCS2D01G583600 chr2B 79.075 411 55 17 462 847 587232924 587233328 4.600000e-63 254.0
40 TraesCS2D01G583600 chr2B 97.059 68 2 0 6588 6655 793356335 793356268 2.270000e-21 115.0
41 TraesCS2D01G583600 chr2B 78.621 145 24 6 999 1138 798571838 798571980 1.370000e-13 89.8
42 TraesCS2D01G583600 chr2B 94.643 56 3 0 886 941 793368156 793368101 4.940000e-13 87.9
43 TraesCS2D01G583600 chr2B 71.471 340 82 14 3037 3365 530733687 530733352 1.070000e-09 76.8
44 TraesCS2D01G583600 chr2B 91.304 46 4 0 5382 5427 220742783 220742738 8.320000e-06 63.9
45 TraesCS2D01G583600 chr2B 88.889 54 3 2 3047 3097 778474762 778474709 8.320000e-06 63.9
46 TraesCS2D01G583600 chr2B 95.122 41 1 1 1459 1499 793364360 793364321 8.320000e-06 63.9
47 TraesCS2D01G583600 chr2B 94.872 39 0 2 5381 5418 200592093 200592056 1.080000e-04 60.2
48 TraesCS2D01G583600 chr7D 97.248 218 6 0 7238 7455 326052544 326052761 4.380000e-98 370.0
49 TraesCS2D01G583600 chr7D 95.283 106 2 3 1985 2088 190163223 190163119 2.220000e-36 165.0
50 TraesCS2D01G583600 chr5D 97.235 217 6 0 7239 7455 421982367 421982583 1.580000e-97 368.0
51 TraesCS2D01G583600 chr5D 79.412 408 45 16 462 854 302399537 302399920 1.660000e-62 252.0
52 TraesCS2D01G583600 chr5D 96.154 104 3 1 1992 2094 65990588 65990485 1.710000e-37 169.0
53 TraesCS2D01G583600 chr5D 91.667 48 2 2 5373 5419 367707885 367707839 2.310000e-06 65.8
54 TraesCS2D01G583600 chr3D 96.818 220 7 0 7236 7455 108290840 108291059 1.580000e-97 368.0
55 TraesCS2D01G583600 chr3D 97.115 104 2 1 1986 2088 138076233 138076336 3.690000e-39 174.0
56 TraesCS2D01G583600 chr3D 78.667 150 21 7 3388 3533 83679099 83678957 1.370000e-13 89.8
57 TraesCS2D01G583600 chr3D 73.737 198 44 8 3166 3360 514996284 514996092 4.970000e-08 71.3
58 TraesCS2D01G583600 chr7A 96.364 220 8 0 7236 7455 219906657 219906876 7.330000e-96 363.0
59 TraesCS2D01G583600 chr7A 82.386 176 27 3 679 854 637691295 637691466 6.210000e-32 150.0
60 TraesCS2D01G583600 chr7A 73.333 450 91 27 4730 5167 500133670 500133238 1.340000e-28 139.0
61 TraesCS2D01G583600 chr7A 81.250 176 28 3 679 854 637674367 637674537 4.840000e-28 137.0
62 TraesCS2D01G583600 chr7A 79.121 182 35 2 674 854 637861876 637862055 1.350000e-23 122.0
63 TraesCS2D01G583600 chr7A 79.339 121 16 6 3426 3543 690379454 690379340 1.070000e-09 76.8
64 TraesCS2D01G583600 chr7A 88.679 53 5 1 566 617 166272113 166272165 8.320000e-06 63.9
65 TraesCS2D01G583600 chr6D 96.000 225 6 3 7239 7462 3331668 3331890 7.330000e-96 363.0
66 TraesCS2D01G583600 chr6D 96.000 225 6 3 7239 7462 3337548 3337770 7.330000e-96 363.0
67 TraesCS2D01G583600 chr4D 95.556 225 9 1 7241 7465 45391837 45391614 9.480000e-95 359.0
68 TraesCS2D01G583600 chr3A 74.512 769 145 36 4673 5420 451689110 451688372 4.540000e-73 287.0
69 TraesCS2D01G583600 chr3A 93.636 110 4 3 1980 2088 109150853 109150960 2.870000e-35 161.0
70 TraesCS2D01G583600 chr3A 94.872 39 0 2 5381 5418 346229791 346229754 1.080000e-04 60.2
71 TraesCS2D01G583600 chr3A 80.000 80 16 0 3133 3212 552214438 552214359 1.080000e-04 60.2
72 TraesCS2D01G583600 chr3B 72.970 973 191 58 4494 5420 179201544 179200598 3.530000e-69 274.0
73 TraesCS2D01G583600 chr3B 79.327 416 50 20 464 853 253665156 253664751 9.890000e-65 259.0
74 TraesCS2D01G583600 chr3B 78.779 344 58 11 492 829 790786372 790786038 6.040000e-52 217.0
75 TraesCS2D01G583600 chr3B 91.228 57 2 3 494 550 31061532 31061479 3.850000e-09 75.0
76 TraesCS2D01G583600 chr3B 84.932 73 7 4 5347 5418 203451495 203451426 4.970000e-08 71.3
77 TraesCS2D01G583600 chr3B 89.362 47 5 0 3051 3097 182378657 182378703 1.080000e-04 60.2
78 TraesCS2D01G583600 chr1B 79.481 424 50 23 462 854 668434835 668434418 5.910000e-67 267.0
79 TraesCS2D01G583600 chr1B 80.851 235 36 6 5179 5411 356944543 356944770 1.020000e-39 176.0
80 TraesCS2D01G583600 chr1B 93.750 112 5 2 1978 2088 572529345 572529455 6.170000e-37 167.0
81 TraesCS2D01G583600 chr1B 76.437 174 33 8 3038 3205 476022651 476022822 4.940000e-13 87.9
82 TraesCS2D01G583600 chr1B 82.474 97 12 5 3437 3530 266332315 266332221 8.270000e-11 80.5
83 TraesCS2D01G583600 chr1B 83.824 68 7 4 5354 5420 598136724 598136788 2.990000e-05 62.1
84 TraesCS2D01G583600 chr1A 72.127 757 170 32 4682 5420 271037199 271036466 3.660000e-44 191.0
85 TraesCS2D01G583600 chr1A 88.462 52 6 0 549 600 89596272 89596221 8.320000e-06 63.9
86 TraesCS2D01G583600 chr1D 94.495 109 5 1 1984 2091 12312463 12312571 6.170000e-37 167.0
87 TraesCS2D01G583600 chr7B 80.085 236 28 9 515 748 701219753 701219971 3.710000e-34 158.0
88 TraesCS2D01G583600 chr5A 88.235 51 5 1 3047 3096 545881507 545881557 1.080000e-04 60.2
89 TraesCS2D01G583600 chr4B 100.000 30 0 0 462 491 23838205 23838176 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G583600 chr2D 643760754 643770680 9926 False 18332.000000 18332 100.000000 1 9927 1 chr2D.!!$F8 9926
1 TraesCS2D01G583600 chr2D 643743974 643745436 1462 False 1506.000000 1506 85.258000 7472 8941 1 chr2D.!!$F7 1469
2 TraesCS2D01G583600 chr2D 643737445 643737967 522 False 538.000000 538 85.421000 940 1467 1 chr2D.!!$F6 527
3 TraesCS2D01G583600 chr2A 768601244 768609561 8317 False 2403.800000 7899 94.020200 1 8198 5 chr2A.!!$F5 8197
4 TraesCS2D01G583600 chr2A 768620097 768623328 3231 False 855.666667 1714 88.445667 8196 9897 3 chr2A.!!$F6 1701
5 TraesCS2D01G583600 chr2A 768571205 768575622 4417 False 740.333333 1463 84.477000 940 8941 3 chr2A.!!$F4 8001
6 TraesCS2D01G583600 chr2A 765052928 765056181 3253 True 445.500000 623 82.439000 1245 8914 2 chr2A.!!$R2 7669
7 TraesCS2D01G583600 chr2B 793350900 793368156 17256 True 1345.977778 3507 92.822222 886 9913 9 chr2B.!!$R6 9027
8 TraesCS2D01G583600 chr2B 793375407 793380440 5033 True 1000.500000 1432 85.885000 940 8929 2 chr2B.!!$R7 7989
9 TraesCS2D01G583600 chr2B 793415699 793416393 694 True 353.000000 353 75.931000 8183 8877 1 chr2B.!!$R5 694
10 TraesCS2D01G583600 chr3A 451688372 451689110 738 True 287.000000 287 74.512000 4673 5420 1 chr3A.!!$R2 747
11 TraesCS2D01G583600 chr3B 179200598 179201544 946 True 274.000000 274 72.970000 4494 5420 1 chr3B.!!$R2 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 933 0.384230 CCAACAACGTACAAGCAGCG 60.384 55.0 0.00 0.00 0.00 5.18 F
1554 6020 0.252197 AGGCCACGACCTTGAATACC 59.748 55.0 5.01 0.00 36.28 2.73 F
3030 7750 0.252103 TTTACCGCCTCCCTCTGTCT 60.252 55.0 0.00 0.00 0.00 3.41 F
3616 8380 0.322546 ACGGAATGGAAAGAGCCACC 60.323 55.0 0.00 0.00 41.56 4.61 F
4275 10782 0.105760 AGGTCACATTGCCACCCAAA 60.106 50.0 1.78 0.00 36.92 3.28 F
5123 11669 0.374063 ACGACACGATCTCGCAGTAG 59.626 55.0 3.00 2.49 44.43 2.57 F
6024 12750 0.407528 TGGCAATGGCTTTGGGTAGA 59.592 50.0 14.12 0.00 40.87 2.59 F
7287 15719 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.0 22.11 1.21 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2343 7063 1.508088 GGCATCGGCTTGAAACCAG 59.492 57.895 0.00 0.0 40.87 4.00 R
3373 8135 0.533085 GCTCCCGCCTTATGAGAACC 60.533 60.000 0.00 0.0 0.00 3.62 R
3849 8614 0.250234 TGGAACTCCAAGATGCGAGG 59.750 55.000 0.00 0.0 44.35 4.63 R
5608 12315 0.664761 CCAAATGCTCATAGCCCACG 59.335 55.000 0.00 0.0 41.51 4.94 R
5921 12644 1.486310 TCATCAGTGGCATGTCTACCC 59.514 52.381 0.00 0.0 0.00 3.69 R
6361 13399 1.183549 ACCACGACCTCATCTGTACC 58.816 55.000 0.00 0.0 0.00 3.34 R
7426 15858 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.0 0.00 5.34 R
9103 17910 0.246360 ATATAGCGCTGGCGTATGCA 59.754 50.000 22.90 0.0 46.35 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 8.644318 ATCTTATGTACTTCGAATGTTGGTAC 57.356 34.615 14.45 14.45 34.95 3.34
52 53 7.833786 TCTTATGTACTTCGAATGTTGGTACT 58.166 34.615 19.32 11.18 35.29 2.73
105 110 5.151297 TGAATAGAGTGAGCACATTGTCA 57.849 39.130 3.19 0.00 0.00 3.58
127 132 5.290885 TCATCGTCTTGGACAAATAATCACG 59.709 40.000 0.00 0.00 32.09 4.35
200 205 4.363991 AAGATGTGAAAGCACTCCTTCT 57.636 40.909 0.00 0.00 45.36 2.85
461 493 5.774498 AGAAAAGAATGGGAAGTGTTGTC 57.226 39.130 0.00 0.00 0.00 3.18
475 507 6.093495 GGAAGTGTTGTCGAATATCCATTTCA 59.907 38.462 0.00 0.00 0.00 2.69
618 658 2.640302 GGTGTCCGAGCAGCTCTCA 61.640 63.158 20.39 13.09 41.98 3.27
647 687 4.741321 AAAATATCGGTCCGGAACAGTA 57.259 40.909 21.79 11.83 0.00 2.74
663 703 7.248437 CGGAACAGTAAACTTTTTCAAAGTCT 58.752 34.615 2.42 0.00 0.00 3.24
675 715 9.283768 ACTTTTTCAAAGTCTCCAATTTTGTTT 57.716 25.926 0.00 0.00 36.33 2.83
724 764 2.642139 ATGAGCTGAAATTTGGCACG 57.358 45.000 13.09 0.00 0.00 5.34
856 896 2.613133 GAGCCATTTAGCTGCTCTCAAG 59.387 50.000 4.91 0.00 45.15 3.02
893 933 0.384230 CCAACAACGTACAAGCAGCG 60.384 55.000 0.00 0.00 0.00 5.18
905 945 5.229469 CGTACAAGCAGCGTATATATAAGCC 59.771 44.000 22.16 11.38 38.30 4.35
957 1018 2.125188 GCAGACAGAGCTGGAGCC 60.125 66.667 0.00 0.00 43.38 4.70
982 1043 6.302535 ACTTAGCTCTGACAGAGTAGAGTA 57.697 41.667 28.76 13.11 44.12 2.59
1301 1413 1.810030 GTCGGCGAACCTGATCACC 60.810 63.158 12.92 0.00 0.00 4.02
1305 1417 0.535335 GGCGAACCTGATCACCTACA 59.465 55.000 0.00 0.00 0.00 2.74
1316 1428 2.285069 ACCTACATGACGGGGCCA 60.285 61.111 4.39 0.00 0.00 5.36
1554 6020 0.252197 AGGCCACGACCTTGAATACC 59.748 55.000 5.01 0.00 36.28 2.73
1840 6455 2.552743 GGCGAAAGGACTATTAATGCCC 59.447 50.000 0.00 0.00 33.95 5.36
1919 6639 7.334671 AGTCTAACAAGTTTATGAGCCTAAAGC 59.665 37.037 0.00 0.00 44.25 3.51
2026 6746 7.041644 CCGTCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
2027 6747 8.009974 CGTCCAAAATAAGTGTCTCAACTTTAG 58.990 37.037 0.00 0.00 40.77 1.85
2037 6757 8.197988 AGTGTCTCAACTTTAGTACAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
2038 6758 7.822822 AGTGTCTCAACTTTAGTACAACTTTGT 59.177 33.333 0.00 0.00 44.86 2.83
2039 6759 9.090692 GTGTCTCAACTTTAGTACAACTTTGTA 57.909 33.333 0.00 0.00 42.35 2.41
2385 7105 5.944007 CCACCTTACCAAAGTATTAGCTTGT 59.056 40.000 0.00 0.00 0.00 3.16
2496 7216 9.415544 CTTTCAGATTTTCCGATCTTTTCATTT 57.584 29.630 0.00 0.00 34.20 2.32
2549 7269 7.849804 ACTCTGGTGACAATATTTCATGTAC 57.150 36.000 0.00 0.00 42.06 2.90
2637 7357 2.860136 TCGCGATTCACATTCATGTCTC 59.140 45.455 3.71 0.00 39.39 3.36
2641 7361 4.093998 GCGATTCACATTCATGTCTCAACT 59.906 41.667 0.00 0.00 39.39 3.16
2648 7368 7.642669 TCACATTCATGTCTCAACTCTTTTTC 58.357 34.615 0.00 0.00 39.39 2.29
2686 7406 3.911868 TGCATGCATTTTGTAGTTGACC 58.088 40.909 18.46 0.00 0.00 4.02
2726 7446 4.865776 TGAAGAAAATTAGTTGCCAACCG 58.134 39.130 3.45 0.00 0.00 4.44
2831 7551 2.570415 TCCCTTGTTTTGGCGATACA 57.430 45.000 0.00 0.00 0.00 2.29
2927 7647 9.521841 AGTCGATGAGAATATTCCTAATAGTGA 57.478 33.333 11.92 0.00 0.00 3.41
3006 7726 0.739561 GAACGACTCCCTAGCGACAT 59.260 55.000 0.00 0.00 0.00 3.06
3008 7728 0.680280 ACGACTCCCTAGCGACATGT 60.680 55.000 0.00 0.00 0.00 3.21
3030 7750 0.252103 TTTACCGCCTCCCTCTGTCT 60.252 55.000 0.00 0.00 0.00 3.41
3037 7757 1.341581 GCCTCCCTCTGTCTCTACTGT 60.342 57.143 0.00 0.00 0.00 3.55
3058 7778 6.115448 TGTCGATCTGTCTCATCTCCTATA 57.885 41.667 0.00 0.00 0.00 1.31
3108 7828 2.116983 GACCCTTGACAGCAGGAGCA 62.117 60.000 0.00 0.00 45.49 4.26
3194 7923 4.075682 GCTCCCTAAAGATGGAATAAGGC 58.924 47.826 0.00 0.00 0.00 4.35
3201 7930 1.149101 GATGGAATAAGGCCCTCCCA 58.851 55.000 0.00 0.00 35.39 4.37
3202 7931 1.713078 GATGGAATAAGGCCCTCCCAT 59.287 52.381 0.00 5.74 37.13 4.00
3206 7935 1.074566 GAATAAGGCCCTCCCATCCTG 59.925 57.143 0.00 0.00 35.39 3.86
3318 8080 3.072915 TCTTTGCTGGATCTTCTTGGACA 59.927 43.478 0.00 0.00 0.00 4.02
3373 8135 4.442375 AGTTAGATCCTTCCGATATGCG 57.558 45.455 0.00 0.00 40.47 4.73
3423 8185 2.359107 TGCCTTCAGCTTGCTCCG 60.359 61.111 0.00 0.00 44.23 4.63
3424 8186 3.808656 GCCTTCAGCTTGCTCCGC 61.809 66.667 0.00 0.00 38.99 5.54
3444 8206 3.566523 GCTGCTTATAATCGTCGCTAGT 58.433 45.455 0.00 0.00 0.00 2.57
3451 8213 7.022384 GCTTATAATCGTCGCTAGTTGTCTAT 58.978 38.462 0.00 0.00 0.00 1.98
3499 8261 7.707035 CACATCTAGTATTCTTTGTACTCCCAC 59.293 40.741 0.00 0.00 34.43 4.61
3500 8262 7.399191 ACATCTAGTATTCTTTGTACTCCCACA 59.601 37.037 0.00 0.00 34.43 4.17
3590 8354 3.350833 CAAGAATTCCTGGAGTCCCAAG 58.649 50.000 6.74 0.00 42.98 3.61
3599 8363 1.553248 TGGAGTCCCAAGTATTCCACG 59.447 52.381 6.74 0.00 40.09 4.94
3616 8380 0.322546 ACGGAATGGAAAGAGCCACC 60.323 55.000 0.00 0.00 41.56 4.61
3653 8417 1.076995 TCGAGGATGAGCCGGAAGA 60.077 57.895 5.05 0.00 43.43 2.87
3704 8468 1.463674 CATTGGGAGCCTTACCACAC 58.536 55.000 0.00 0.00 36.27 3.82
3880 8645 3.537337 TGGAGTTCCAAATAAGAGGGGA 58.463 45.455 0.00 0.00 44.35 4.81
3922 8687 4.341487 TCAATCGTGAGGAAGGAGTAAGA 58.659 43.478 0.00 0.00 0.00 2.10
3961 8726 2.076863 GGCCGGATTAGGAATCATTCG 58.923 52.381 5.05 0.00 39.71 3.34
4074 10540 2.235016 AGACAATAGCCCGTTTTGCAA 58.765 42.857 0.00 0.00 0.00 4.08
4198 10705 1.137872 GTGGGTTCATGGTTGTTTGCA 59.862 47.619 0.00 0.00 0.00 4.08
4263 10770 0.541063 TGGGAGTAGCGAAGGTCACA 60.541 55.000 0.00 0.00 40.68 3.58
4275 10782 0.105760 AGGTCACATTGCCACCCAAA 60.106 50.000 1.78 0.00 36.92 3.28
4299 10806 3.626996 CTTGGGGCTGCCGACATGA 62.627 63.158 13.40 0.00 0.00 3.07
4384 10891 6.269307 AGAACACCCTAGTAGCTTCTAAAACA 59.731 38.462 1.47 0.00 0.00 2.83
4402 10909 3.726291 ACATTTTGACAACTTTCGGGG 57.274 42.857 0.00 0.00 0.00 5.73
4410 10917 1.418637 ACAACTTTCGGGGCACTTCTA 59.581 47.619 0.00 0.00 0.00 2.10
4460 10967 3.369892 CCGGGACACTTTTGAGATCATCT 60.370 47.826 0.00 0.00 0.00 2.90
4461 10968 4.256920 CGGGACACTTTTGAGATCATCTT 58.743 43.478 0.00 0.00 0.00 2.40
4517 11025 9.844257 CAATTATCTCCTAGTTCTCTTGGAAAT 57.156 33.333 0.00 0.00 42.89 2.17
4522 11030 7.334090 TCTCCTAGTTCTCTTGGAAATCAATG 58.666 38.462 0.00 0.00 42.89 2.82
4593 11101 3.939066 AGAACACCCTTCGGTCAATAAG 58.061 45.455 0.00 0.00 42.04 1.73
4652 11161 8.771766 CACATATTCACGAAGATCTTCATTGAT 58.228 33.333 29.93 20.47 39.46 2.57
4724 11233 2.295253 ACCCGATGCGAGACTTTTAG 57.705 50.000 0.00 0.00 0.00 1.85
4886 11402 0.673644 CGAGTGGGCCCAAACTGTAG 60.674 60.000 30.64 10.18 0.00 2.74
4887 11403 0.400594 GAGTGGGCCCAAACTGTAGT 59.599 55.000 30.64 4.06 0.00 2.73
4890 11406 1.977009 GGGCCCAAACTGTAGTGCC 60.977 63.158 19.95 3.26 38.16 5.01
5123 11669 0.374063 ACGACACGATCTCGCAGTAG 59.626 55.000 3.00 2.49 44.43 2.57
5169 11715 6.640518 ACACCACTGATCTCGTAACAATATT 58.359 36.000 0.00 0.00 0.00 1.28
5255 11812 4.569719 AGCTAGTCCTAGAGGCTAGATC 57.430 50.000 21.50 10.99 40.84 2.75
5330 11887 9.859427 TTTGAATCTCACATTCAATAACCATTC 57.141 29.630 9.89 0.00 44.45 2.67
5473 12173 3.695830 AACGAAAGACCAATGGCTAGA 57.304 42.857 0.00 0.00 0.00 2.43
5474 12175 3.695830 ACGAAAGACCAATGGCTAGAA 57.304 42.857 0.00 0.00 0.00 2.10
5556 12259 2.158900 AGCATGTCTTCTCCGTATTGGG 60.159 50.000 0.00 0.00 38.76 4.12
5608 12315 2.486966 GCGTTGAAGGCCATCTGC 59.513 61.111 9.78 7.07 40.16 4.26
5644 12351 7.221450 AGCATTTGGTGTTGTACTAAGTCTAA 58.779 34.615 0.00 0.00 31.00 2.10
5864 12572 4.965119 AAAGCTTTATGGGAATCGTGTC 57.035 40.909 10.72 0.00 0.00 3.67
5917 12640 6.476863 GTGATGCCACGTAAATAAAATTCG 57.523 37.500 0.00 0.00 33.10 3.34
5921 12644 3.717404 GCCACGTAAATAAAATTCGCTCG 59.283 43.478 0.00 0.00 0.00 5.03
5935 12658 1.521681 GCTCGGGTAGACATGCCAC 60.522 63.158 0.00 0.00 31.63 5.01
6021 12747 2.060370 CTTGGCAATGGCTTTGGGT 58.940 52.632 14.12 0.00 40.87 4.51
6024 12750 0.407528 TGGCAATGGCTTTGGGTAGA 59.592 50.000 14.12 0.00 40.87 2.59
6115 12841 4.188462 CGTATGTGCTCTATTGAAACCCA 58.812 43.478 0.00 0.00 0.00 4.51
6267 13305 5.974108 TGTAGAAAGGCATAGTACACTTCC 58.026 41.667 0.00 0.00 0.00 3.46
6346 13384 3.641436 GTCTTGGAGGGAAAAACACCAAT 59.359 43.478 0.00 0.00 39.39 3.16
6399 13466 7.437565 GTCGTGGTAGTAGGATTTTAGGAAATC 59.562 40.741 3.83 3.83 46.75 2.17
6693 15085 4.825199 AATTAGCTAGAGAGAGGGAGGT 57.175 45.455 0.00 0.00 0.00 3.85
6735 15130 1.474077 CTCCCTTGGAAAATGCCGAAG 59.526 52.381 0.00 0.00 0.00 3.79
6742 15137 5.336372 CCTTGGAAAATGCCGAAGTTATTCA 60.336 40.000 0.00 0.00 34.94 2.57
7160 15588 2.278206 CGTCCGATGAGCCTGACG 60.278 66.667 0.00 0.00 43.64 4.35
7249 15681 8.934023 TCACTTAAATTTGATACTCCCTTTGT 57.066 30.769 0.00 0.00 0.00 2.83
7250 15682 9.362151 TCACTTAAATTTGATACTCCCTTTGTT 57.638 29.630 0.00 0.00 0.00 2.83
7251 15683 9.981114 CACTTAAATTTGATACTCCCTTTGTTT 57.019 29.630 0.00 0.00 0.00 2.83
7255 15687 7.839680 AATTTGATACTCCCTTTGTTTCAGT 57.160 32.000 0.00 0.00 29.90 3.41
7256 15688 7.839680 ATTTGATACTCCCTTTGTTTCAGTT 57.160 32.000 0.00 0.00 29.90 3.16
7257 15689 7.654022 TTTGATACTCCCTTTGTTTCAGTTT 57.346 32.000 0.00 0.00 29.90 2.66
7258 15690 8.754991 TTTGATACTCCCTTTGTTTCAGTTTA 57.245 30.769 0.00 0.00 29.90 2.01
7259 15691 7.739498 TGATACTCCCTTTGTTTCAGTTTAC 57.261 36.000 0.00 0.00 0.00 2.01
7260 15692 7.284074 TGATACTCCCTTTGTTTCAGTTTACA 58.716 34.615 0.00 0.00 0.00 2.41
7261 15693 7.776030 TGATACTCCCTTTGTTTCAGTTTACAA 59.224 33.333 0.00 0.00 32.76 2.41
7262 15694 6.451064 ACTCCCTTTGTTTCAGTTTACAAG 57.549 37.500 0.00 0.00 35.83 3.16
7263 15695 5.949952 ACTCCCTTTGTTTCAGTTTACAAGT 59.050 36.000 0.00 0.00 35.83 3.16
7264 15696 6.095021 ACTCCCTTTGTTTCAGTTTACAAGTC 59.905 38.462 0.00 0.00 35.83 3.01
7265 15697 5.358725 TCCCTTTGTTTCAGTTTACAAGTCC 59.641 40.000 0.00 0.00 35.83 3.85
7266 15698 5.359860 CCCTTTGTTTCAGTTTACAAGTCCT 59.640 40.000 0.00 0.00 35.83 3.85
7267 15699 6.544564 CCCTTTGTTTCAGTTTACAAGTCCTA 59.455 38.462 0.00 0.00 35.83 2.94
7268 15700 7.415229 CCTTTGTTTCAGTTTACAAGTCCTAC 58.585 38.462 0.00 0.00 35.83 3.18
7269 15701 6.592798 TTGTTTCAGTTTACAAGTCCTACG 57.407 37.500 0.00 0.00 31.15 3.51
7270 15702 4.508861 TGTTTCAGTTTACAAGTCCTACGC 59.491 41.667 0.00 0.00 0.00 4.42
7271 15703 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
7272 15704 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
7273 15705 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
7274 15706 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
7275 15707 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
7276 15708 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
7277 15709 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
7278 15710 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
7279 15711 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
7280 15712 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
7281 15713 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
7282 15714 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
7283 15715 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
7284 15716 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
7285 15717 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
7286 15718 0.386838 ACGCGTATACCTAGGTTGCC 59.613 55.000 22.11 7.02 0.00 4.52
7287 15719 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
7288 15720 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
7289 15721 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
7290 15722 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
7291 15723 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
7292 15724 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
7293 15725 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
7294 15726 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
7295 15727 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
7296 15728 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
7297 15729 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
7298 15730 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
7299 15731 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
7300 15732 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
7301 15733 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
7302 15734 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
7303 15735 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
7304 15736 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
7305 15737 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
7306 15738 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
7352 15784 8.786826 ATACCGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
7353 15785 7.504924 ACCGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
7354 15786 7.584987 ACCGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
7355 15787 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
7356 15788 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
7357 15789 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
7406 15838 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
7407 15839 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
7408 15840 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
7409 15841 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
7410 15842 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
7420 15852 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
7421 15853 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
7422 15854 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
7423 15855 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
7437 15869 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
7438 15870 4.053526 TACGCGCACGCCCTGTAA 62.054 61.111 5.73 0.00 45.53 2.41
7439 15871 3.570621 TACGCGCACGCCCTGTAAA 62.571 57.895 5.73 0.00 45.53 2.01
7440 15872 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
7441 15873 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
7442 15874 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
7443 15875 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
7444 15876 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
7445 15877 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
7446 15878 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
7447 15879 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
7448 15880 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
7449 15881 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
7450 15882 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
7451 15883 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
7452 15884 2.763448 CCCTGTAAACTGAGAGAGAGGG 59.237 54.545 0.00 0.00 33.23 4.30
7453 15885 3.564571 CCCTGTAAACTGAGAGAGAGGGA 60.565 52.174 8.74 0.00 41.40 4.20
7454 15886 3.699038 CCTGTAAACTGAGAGAGAGGGAG 59.301 52.174 0.00 0.00 0.00 4.30
7455 15887 3.093057 TGTAAACTGAGAGAGAGGGAGC 58.907 50.000 0.00 0.00 0.00 4.70
7456 15888 2.317371 AAACTGAGAGAGAGGGAGCA 57.683 50.000 0.00 0.00 0.00 4.26
7504 15975 1.751437 GATTGGTAAGGTGTGGGAGC 58.249 55.000 0.00 0.00 0.00 4.70
7740 16547 4.555709 TTTGTCGCTGCGGGTGGT 62.556 61.111 23.03 0.00 0.00 4.16
8909 17716 1.202582 CAAGCACCTACGTCTACAGCT 59.797 52.381 0.00 0.00 0.00 4.24
8958 17765 5.880332 ACCTACCATGTACTACAAAATGCAG 59.120 40.000 0.00 0.00 0.00 4.41
9091 17898 6.042093 TCTCACTCCATGAATTGGGTAGATAC 59.958 42.308 0.00 0.00 46.45 2.24
9174 19154 3.370840 AAGCCCATTTCTACATGCTGA 57.629 42.857 0.00 0.00 0.00 4.26
9195 19175 7.962918 TGCTGATTTTTCTTAACTATCGAAAGC 59.037 33.333 0.00 0.00 0.00 3.51
9217 19197 2.808919 TCCACTTGGTTTGGTCAACAA 58.191 42.857 0.00 0.00 37.07 2.83
9264 20598 8.361592 ACTATTAATCACGTGGCATTACTTAC 57.638 34.615 17.00 0.00 0.00 2.34
9309 20643 3.423123 CCTGCAACGACGCTTAAGTTAAG 60.423 47.826 16.87 16.87 38.80 1.85
9323 20657 1.616865 AGTTAAGTGCCGTCAGTGCTA 59.383 47.619 0.00 0.00 0.00 3.49
9412 20746 2.924421 ACTACTACCTACTACGGTGCC 58.076 52.381 0.00 0.00 37.93 5.01
9540 20878 0.877649 CACTAGCTATGCGCCACCAG 60.878 60.000 4.18 0.00 40.39 4.00
9612 20950 5.614308 TCATCACAGTTCATGTCTTCAAGT 58.386 37.500 0.00 0.00 41.41 3.16
9635 20973 3.383185 CCCTAACAGTTTGCAAGGAAACA 59.617 43.478 17.41 0.00 38.14 2.83
9636 20974 4.142049 CCCTAACAGTTTGCAAGGAAACAA 60.142 41.667 17.41 2.01 38.14 2.83
9637 20975 4.803613 CCTAACAGTTTGCAAGGAAACAAC 59.196 41.667 17.41 0.00 38.14 3.32
9638 20976 4.535526 AACAGTTTGCAAGGAAACAACT 57.464 36.364 17.41 0.00 38.14 3.16
9639 20977 4.110036 ACAGTTTGCAAGGAAACAACTC 57.890 40.909 17.41 0.00 38.14 3.01
9640 20978 3.509575 ACAGTTTGCAAGGAAACAACTCA 59.490 39.130 17.41 0.00 38.14 3.41
9641 20979 4.107622 CAGTTTGCAAGGAAACAACTCAG 58.892 43.478 17.41 0.00 38.14 3.35
9642 20980 4.016444 AGTTTGCAAGGAAACAACTCAGA 58.984 39.130 17.41 0.00 38.14 3.27
9643 20981 4.646492 AGTTTGCAAGGAAACAACTCAGAT 59.354 37.500 17.41 0.00 38.14 2.90
9644 20982 5.127682 AGTTTGCAAGGAAACAACTCAGATT 59.872 36.000 17.41 0.00 38.14 2.40
9645 20983 5.596836 TTGCAAGGAAACAACTCAGATTT 57.403 34.783 0.00 0.00 0.00 2.17
9646 20984 6.707440 TTGCAAGGAAACAACTCAGATTTA 57.293 33.333 0.00 0.00 0.00 1.40
9647 20985 6.317789 TGCAAGGAAACAACTCAGATTTAG 57.682 37.500 0.00 0.00 0.00 1.85
9648 20986 5.157067 GCAAGGAAACAACTCAGATTTAGC 58.843 41.667 0.00 0.00 0.00 3.09
9649 20987 5.278463 GCAAGGAAACAACTCAGATTTAGCA 60.278 40.000 0.00 0.00 0.00 3.49
9650 20988 6.376978 CAAGGAAACAACTCAGATTTAGCAG 58.623 40.000 0.00 0.00 0.00 4.24
9651 20989 5.869579 AGGAAACAACTCAGATTTAGCAGA 58.130 37.500 0.00 0.00 0.00 4.26
9652 20990 6.479884 AGGAAACAACTCAGATTTAGCAGAT 58.520 36.000 0.00 0.00 0.00 2.90
9653 20991 6.944862 AGGAAACAACTCAGATTTAGCAGATT 59.055 34.615 0.00 0.00 0.00 2.40
9654 20992 8.103305 AGGAAACAACTCAGATTTAGCAGATTA 58.897 33.333 0.00 0.00 0.00 1.75
9655 20993 8.897752 GGAAACAACTCAGATTTAGCAGATTAT 58.102 33.333 0.00 0.00 0.00 1.28
9658 20996 8.443953 ACAACTCAGATTTAGCAGATTATTCC 57.556 34.615 0.00 0.00 0.00 3.01
9659 20997 8.270744 ACAACTCAGATTTAGCAGATTATTCCT 58.729 33.333 0.00 0.00 0.00 3.36
9660 20998 8.772705 CAACTCAGATTTAGCAGATTATTCCTC 58.227 37.037 0.00 0.00 0.00 3.71
9735 21107 2.437281 CCAGCATATCCAAGTCAGGACT 59.563 50.000 0.00 0.00 44.94 3.85
9736 21108 3.494048 CCAGCATATCCAAGTCAGGACTC 60.494 52.174 1.86 0.00 41.58 3.36
9744 21116 3.311486 CAAGTCAGGACTCTTGGTCTC 57.689 52.381 1.86 0.00 43.97 3.36
9772 21144 5.982356 TCTCTCAACATGAACTAATGAGGG 58.018 41.667 0.00 3.60 39.45 4.30
9783 21155 9.573133 CATGAACTAATGAGGGTAAACATTTTC 57.427 33.333 0.00 0.00 37.75 2.29
9793 21165 9.974980 TGAGGGTAAACATTTTCAGAAAATAAC 57.025 29.630 18.84 14.17 38.97 1.89
9913 21486 1.126113 CCTTCACGGTTTCGAATCACG 59.874 52.381 0.00 6.89 44.09 4.35
9914 21487 1.126113 CTTCACGGTTTCGAATCACGG 59.874 52.381 17.07 11.96 42.82 4.94
9915 21488 0.668096 TCACGGTTTCGAATCACGGG 60.668 55.000 17.07 14.32 42.82 5.28
9916 21489 0.947180 CACGGTTTCGAATCACGGGT 60.947 55.000 17.07 5.81 42.82 5.28
9917 21490 0.668401 ACGGTTTCGAATCACGGGTC 60.668 55.000 17.07 0.00 42.82 4.46
9918 21491 0.668096 CGGTTTCGAATCACGGGTCA 60.668 55.000 0.00 0.00 42.82 4.02
9919 21492 1.515081 GGTTTCGAATCACGGGTCAA 58.485 50.000 0.00 0.00 42.82 3.18
9920 21493 1.196127 GGTTTCGAATCACGGGTCAAC 59.804 52.381 0.00 0.00 42.82 3.18
9921 21494 1.196127 GTTTCGAATCACGGGTCAACC 59.804 52.381 0.00 0.00 42.82 3.77
9922 21495 0.393448 TTCGAATCACGGGTCAACCA 59.607 50.000 0.00 0.00 42.82 3.67
9923 21496 0.320073 TCGAATCACGGGTCAACCAC 60.320 55.000 0.89 0.00 42.82 4.16
9924 21497 0.601576 CGAATCACGGGTCAACCACA 60.602 55.000 0.89 0.00 40.22 4.17
9925 21498 1.821216 GAATCACGGGTCAACCACAT 58.179 50.000 0.89 0.00 40.22 3.21
9926 21499 2.675603 CGAATCACGGGTCAACCACATA 60.676 50.000 0.89 0.00 40.22 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.125956 GTGCAATCACGTGGAGTACCAA 61.126 50.000 17.00 0.00 39.59 3.67
46 47 0.682292 TGCAATCACGTGGAGTACCA 59.318 50.000 17.00 3.22 44.76 3.25
47 48 1.076332 GTGCAATCACGTGGAGTACC 58.924 55.000 17.00 0.50 32.98 3.34
48 49 1.790755 TGTGCAATCACGTGGAGTAC 58.209 50.000 17.00 14.94 46.01 2.73
50 51 2.760634 TATGTGCAATCACGTGGAGT 57.239 45.000 17.00 0.00 46.01 3.85
51 52 2.352651 CCTTATGTGCAATCACGTGGAG 59.647 50.000 17.00 7.07 46.01 3.86
52 53 2.027653 TCCTTATGTGCAATCACGTGGA 60.028 45.455 17.00 2.69 46.01 4.02
105 110 4.034048 GCGTGATTATTTGTCCAAGACGAT 59.966 41.667 0.00 0.00 34.95 3.73
127 132 1.745489 CTTACCACCTTGCTCGGGC 60.745 63.158 0.00 0.00 39.26 6.13
448 480 3.262151 TGGATATTCGACAACACTTCCCA 59.738 43.478 0.00 0.00 0.00 4.37
461 493 2.738846 CGGGAGCTGAAATGGATATTCG 59.261 50.000 0.00 0.00 0.00 3.34
626 666 3.622166 ACTGTTCCGGACCGATATTTT 57.378 42.857 17.49 0.00 0.00 1.82
627 667 4.741321 TTACTGTTCCGGACCGATATTT 57.259 40.909 17.49 0.00 0.00 1.40
629 669 3.703052 AGTTTACTGTTCCGGACCGATAT 59.297 43.478 17.49 0.00 0.00 1.63
630 670 3.091545 AGTTTACTGTTCCGGACCGATA 58.908 45.455 17.49 0.00 0.00 2.92
632 672 1.331214 AGTTTACTGTTCCGGACCGA 58.669 50.000 17.49 0.00 0.00 4.69
633 673 2.159327 AAGTTTACTGTTCCGGACCG 57.841 50.000 1.83 6.99 0.00 4.79
634 674 4.336153 TGAAAAAGTTTACTGTTCCGGACC 59.664 41.667 1.83 0.00 0.00 4.46
642 682 7.696992 TGGAGACTTTGAAAAAGTTTACTGT 57.303 32.000 6.81 0.00 0.00 3.55
647 687 9.283768 ACAAAATTGGAGACTTTGAAAAAGTTT 57.716 25.926 6.81 1.56 34.76 2.66
724 764 3.679980 AGATGTGTTAGTGCGTGATGTTC 59.320 43.478 0.00 0.00 0.00 3.18
856 896 6.870971 TGTTGGTTGGATTAGTTACAAGAC 57.129 37.500 0.00 0.00 0.00 3.01
905 945 4.374399 AGACAAAAATCTTTGCCAGCTTG 58.626 39.130 0.00 0.00 44.96 4.01
957 1018 6.346096 ACTCTACTCTGTCAGAGCTAAGTAG 58.654 44.000 26.65 20.21 46.12 2.57
982 1043 1.556911 CATCTTGCTACACCCCTCAGT 59.443 52.381 0.00 0.00 0.00 3.41
1301 1413 1.153369 CAGTGGCCCCGTCATGTAG 60.153 63.158 0.00 0.00 0.00 2.74
1316 1428 4.643387 GCGTTGGAGTGGCCCAGT 62.643 66.667 0.00 0.00 37.53 4.00
1508 5964 5.703592 TGATTGTGCCGTAAGTAGAAATGTT 59.296 36.000 0.00 0.00 0.00 2.71
1554 6020 4.527564 AGATTTGAAAGCAACGAGTTTCG 58.472 39.130 0.00 0.00 46.93 3.46
1890 6610 6.534634 AGGCTCATAAACTTGTTAGACTGTT 58.465 36.000 0.00 0.00 0.00 3.16
1919 6639 9.725019 TTCAAACATGCCTATATTGGACTATAG 57.275 33.333 7.44 0.00 33.34 1.31
2039 6759 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
2040 6760 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
2042 6762 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2048 6768 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2049 6769 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2050 6770 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2051 6771 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2052 6772 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2053 6773 6.605594 TGTCCCAAAATAAGTGTCTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
2054 6774 6.126409 TGTCCCAAAATAAGTGTCTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
2055 6775 5.690865 TGTCCCAAAATAAGTGTCTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
2056 6776 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
2057 6777 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
2058 6778 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
2059 6779 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
2060 6780 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
2116 6836 9.554724 TGTAGCAGAAATTCATAATTCGAAAAC 57.445 29.630 0.00 0.00 0.00 2.43
2343 7063 1.508088 GGCATCGGCTTGAAACCAG 59.492 57.895 0.00 0.00 40.87 4.00
2385 7105 2.123248 TTGGCGAAGGATGTCTGGCA 62.123 55.000 0.00 0.00 0.00 4.92
2516 7236 9.685276 AAATATTGTCACCAGAGTTTATCATGA 57.315 29.630 0.00 0.00 0.00 3.07
2549 7269 4.201812 CGTACTTGTACCAAATCCATGCAG 60.202 45.833 5.47 0.00 0.00 4.41
2579 7299 4.043310 TGAGGACTGAGGTGGATTTGAATT 59.957 41.667 0.00 0.00 0.00 2.17
2637 7357 3.820557 TCTCCACCCAGAAAAAGAGTTG 58.179 45.455 0.00 0.00 0.00 3.16
2641 7361 5.094387 ACTAGATCTCCACCCAGAAAAAGA 58.906 41.667 0.00 0.00 0.00 2.52
2648 7368 1.833630 TGCAACTAGATCTCCACCCAG 59.166 52.381 0.00 0.00 0.00 4.45
2704 7424 4.580995 TCGGTTGGCAACTAATTTTCTTCA 59.419 37.500 27.77 0.00 37.61 3.02
2726 7446 4.016444 TGGCAAAATGGATAGACCTGTTC 58.984 43.478 0.00 0.00 39.86 3.18
2796 7516 7.660030 AACAAGGGAATTACCAAATATCTGG 57.340 36.000 10.06 0.00 42.68 3.86
2799 7519 7.279981 GCCAAAACAAGGGAATTACCAAATATC 59.720 37.037 10.06 0.00 41.20 1.63
2831 7551 7.638444 CCCCAATTATCCCTACCAAAATTTTT 58.362 34.615 0.00 0.00 0.00 1.94
2889 7609 3.935203 TCTCATCGACTTCATTCTTTGGC 59.065 43.478 0.00 0.00 0.00 4.52
3014 7734 1.572689 TAGAGACAGAGGGAGGCGGT 61.573 60.000 0.00 0.00 0.00 5.68
3030 7750 5.029807 AGATGAGACAGATCGACAGTAGA 57.970 43.478 0.00 0.00 0.00 2.59
3037 7757 5.182487 GCTATAGGAGATGAGACAGATCGA 58.818 45.833 1.04 0.00 0.00 3.59
3108 7828 4.020485 ACATACTAAAAACCGAGCAGGAGT 60.020 41.667 5.19 0.78 45.00 3.85
3258 8020 2.582498 CGAGATCCGCCGGTGAAC 60.582 66.667 18.79 5.91 0.00 3.18
3283 8045 2.549754 CAGCAAAGACAAACACCGATCT 59.450 45.455 0.00 0.00 0.00 2.75
3318 8080 1.577328 CGCAGCCAAACGAAGACCAT 61.577 55.000 0.00 0.00 0.00 3.55
3373 8135 0.533085 GCTCCCGCCTTATGAGAACC 60.533 60.000 0.00 0.00 0.00 3.62
3382 8144 3.854669 CTCCATCGCTCCCGCCTT 61.855 66.667 0.00 0.00 0.00 4.35
3423 8185 3.566523 ACTAGCGACGATTATAAGCAGC 58.433 45.455 0.00 3.44 0.00 5.25
3424 8186 4.976731 ACAACTAGCGACGATTATAAGCAG 59.023 41.667 0.00 0.00 0.00 4.24
3451 8213 8.078060 TGTGAGAGAAATTACATCCATGTCTA 57.922 34.615 0.00 0.00 41.97 2.59
3574 8338 3.459969 GGAATACTTGGGACTCCAGGAAT 59.540 47.826 1.52 0.00 45.04 3.01
3599 8363 0.035439 TCGGTGGCTCTTTCCATTCC 60.035 55.000 0.00 0.00 38.57 3.01
3616 8380 2.221749 CGACAATGACTTATGGCCATCG 59.778 50.000 24.80 17.23 0.00 3.84
3653 8417 0.329596 GACTGCCTTTGGGATGTCCT 59.670 55.000 0.00 0.00 36.20 3.85
3704 8468 5.586243 ACTCAACTTATTCATCCAATGTCCG 59.414 40.000 0.00 0.00 0.00 4.79
3849 8614 0.250234 TGGAACTCCAAGATGCGAGG 59.750 55.000 0.00 0.00 44.35 4.63
3880 8645 1.771255 AGCAGGACAAAGACTCCAACT 59.229 47.619 0.00 0.00 0.00 3.16
3922 8687 0.631212 CCCCTTCCCCTACAAGCATT 59.369 55.000 0.00 0.00 0.00 3.56
3961 8726 3.399330 TCCTCCAAACGACAGAAATGAC 58.601 45.455 0.00 0.00 0.00 3.06
4050 8815 3.270877 CAAAACGGGCTATTGTCTAGCT 58.729 45.455 4.42 0.00 40.25 3.32
4074 10540 3.708631 CCCTTATGGTGTCTCACAGATCT 59.291 47.826 0.00 0.00 35.86 2.75
4198 10705 2.360854 CCCCTCCTTCCTCTGGATAACT 60.361 54.545 0.00 0.00 32.56 2.24
4263 10770 2.040145 CAAGGGAAATTTGGGTGGCAAT 59.960 45.455 0.00 0.00 0.00 3.56
4299 10806 2.078665 AATGCCGCCCATAGGGTCT 61.079 57.895 3.68 0.00 46.51 3.85
4384 10891 2.035632 TGCCCCGAAAGTTGTCAAAAT 58.964 42.857 0.00 0.00 0.00 1.82
4393 10900 1.275573 GTCTAGAAGTGCCCCGAAAGT 59.724 52.381 0.00 0.00 0.00 2.66
4402 10909 1.471676 CCCCGTGATGTCTAGAAGTGC 60.472 57.143 0.00 0.00 0.00 4.40
4410 10917 0.541863 GGAATGTCCCCGTGATGTCT 59.458 55.000 0.00 0.00 0.00 3.41
4460 10967 3.297134 AGGACTTTTGAAGGTGCTCAA 57.703 42.857 0.00 0.00 33.48 3.02
4461 10968 3.297134 AAGGACTTTTGAAGGTGCTCA 57.703 42.857 0.83 0.00 33.19 4.26
4517 11025 1.876799 CACACGCTTAACCACCATTGA 59.123 47.619 0.00 0.00 0.00 2.57
4522 11030 1.232621 GGGTCACACGCTTAACCACC 61.233 60.000 0.00 0.00 33.27 4.61
4593 11101 6.980416 AAGGGTGTCTAGACCTATTGATAC 57.020 41.667 20.11 8.59 36.14 2.24
4652 11161 1.274167 ACGCGATAAAGTCAGGTTGGA 59.726 47.619 15.93 0.00 0.00 3.53
4761 11270 9.573133 GAACAAAATTGGTAATGAGGATAACTG 57.427 33.333 0.00 0.00 0.00 3.16
4852 11368 3.057456 CCCACTCGGTATTTCTCTATCCG 60.057 52.174 0.00 0.00 42.12 4.18
4890 11406 1.402896 TTAGCTCCTCTGGCGATGGG 61.403 60.000 0.00 0.00 34.52 4.00
5109 11655 4.335874 ACTTATGAACTACTGCGAGATCGT 59.664 41.667 3.94 0.00 42.22 3.73
5169 11715 1.071542 TGTGACAAGGATGCCGAGAAA 59.928 47.619 0.00 0.00 0.00 2.52
5255 11812 8.455903 AAACATAGACACCATAAAGATCCATG 57.544 34.615 0.00 0.00 0.00 3.66
5473 12173 9.152595 GTTTAAGACTATCCTCGATGACTTTTT 57.847 33.333 0.00 0.00 0.00 1.94
5474 12175 8.532819 AGTTTAAGACTATCCTCGATGACTTTT 58.467 33.333 0.00 0.00 36.65 2.27
5556 12259 2.910977 CCTAACATACCCCTACCATCCC 59.089 54.545 0.00 0.00 0.00 3.85
5608 12315 0.664761 CCAAATGCTCATAGCCCACG 59.335 55.000 0.00 0.00 41.51 4.94
5864 12572 8.034215 AGAAAGACACTCACTATGATCTTCAAG 58.966 37.037 0.00 0.00 0.00 3.02
5917 12640 1.521681 GTGGCATGTCTACCCGAGC 60.522 63.158 0.00 0.00 0.00 5.03
5921 12644 1.486310 TCATCAGTGGCATGTCTACCC 59.514 52.381 0.00 0.00 0.00 3.69
5935 12658 3.564644 GGTGATCAAGCTGGATTCATCAG 59.435 47.826 4.72 0.00 35.49 2.90
5987 12712 3.003480 GCCAAGCTTCTAACTACCAGTG 58.997 50.000 0.00 0.00 0.00 3.66
6021 12747 6.542821 ACACATCCCTCTCAAAAATTGTCTA 58.457 36.000 0.00 0.00 0.00 2.59
6024 12750 5.139727 TGACACATCCCTCTCAAAAATTGT 58.860 37.500 0.00 0.00 0.00 2.71
6267 13305 2.369394 GATGCCCCTTTGTCCAACTAG 58.631 52.381 0.00 0.00 0.00 2.57
6361 13399 1.183549 ACCACGACCTCATCTGTACC 58.816 55.000 0.00 0.00 0.00 3.34
6399 13466 6.202516 TCTTTTCACACAACCAAAAGGTAG 57.797 37.500 0.00 0.00 37.60 3.18
6411 13478 2.552315 GGCCTCGAATTCTTTTCACACA 59.448 45.455 3.52 0.00 0.00 3.72
6507 13619 4.381932 GGCCCTGGATTTACAAACATGAAG 60.382 45.833 0.00 0.00 0.00 3.02
6735 15130 5.107453 CGAGTTTGTGAGGTCTGTGAATAAC 60.107 44.000 0.00 0.00 0.00 1.89
6742 15137 2.628178 TGATCGAGTTTGTGAGGTCTGT 59.372 45.455 0.00 0.00 0.00 3.41
7036 15464 8.034215 TGCATATCACCCATTTTAACTTCAAAG 58.966 33.333 0.00 0.00 0.00 2.77
7160 15588 9.809096 TCATACATGAGAGAAACTTAATGAGAC 57.191 33.333 0.00 0.00 32.11 3.36
7240 15672 6.451064 ACTTGTAAACTGAAACAAAGGGAG 57.549 37.500 0.00 0.00 35.32 4.30
7241 15673 5.358725 GGACTTGTAAACTGAAACAAAGGGA 59.641 40.000 0.00 0.00 35.32 4.20
7242 15674 5.359860 AGGACTTGTAAACTGAAACAAAGGG 59.640 40.000 0.00 0.00 35.32 3.95
7243 15675 6.451064 AGGACTTGTAAACTGAAACAAAGG 57.549 37.500 0.00 0.00 35.32 3.11
7244 15676 7.123830 CGTAGGACTTGTAAACTGAAACAAAG 58.876 38.462 0.00 0.00 35.32 2.77
7245 15677 6.457257 GCGTAGGACTTGTAAACTGAAACAAA 60.457 38.462 0.00 0.00 35.32 2.83
7246 15678 5.006941 GCGTAGGACTTGTAAACTGAAACAA 59.993 40.000 0.00 0.00 34.57 2.83
7247 15679 4.508861 GCGTAGGACTTGTAAACTGAAACA 59.491 41.667 0.00 0.00 0.00 2.83
7248 15680 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
7249 15681 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
7250 15682 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
7251 15683 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
7252 15684 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
7253 15685 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
7254 15686 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
7255 15687 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
7256 15688 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
7257 15689 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
7258 15690 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
7259 15691 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
7260 15692 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
7261 15693 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
7262 15694 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
7263 15695 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
7264 15696 2.351157 GCAACCTAGGTATACGCGTAGG 60.351 54.545 24.78 21.85 46.64 3.18
7265 15697 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
7266 15698 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42
7267 15699 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
7268 15700 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
7269 15701 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
7270 15702 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
7271 15703 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
7272 15704 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
7273 15705 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
7274 15706 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
7275 15707 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
7276 15708 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
7277 15709 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
7278 15710 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
7279 15711 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
7280 15712 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
7326 15758 9.878667 TCAGATGTTCTATTTTCAAACGGTATA 57.121 29.630 0.00 0.00 0.00 1.47
7327 15759 8.786826 TCAGATGTTCTATTTTCAAACGGTAT 57.213 30.769 0.00 0.00 0.00 2.73
7328 15760 8.610248 TTCAGATGTTCTATTTTCAAACGGTA 57.390 30.769 0.00 0.00 0.00 4.02
7329 15761 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
7330 15762 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
7331 15763 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
7380 15812 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
7381 15813 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
7382 15814 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
7383 15815 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
7384 15816 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
7385 15817 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
7386 15818 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
7387 15819 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
7388 15820 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
7389 15821 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
7390 15822 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
7391 15823 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
7399 15831 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
7400 15832 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
7401 15833 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
7402 15834 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
7403 15835 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
7404 15836 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
7405 15837 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
7406 15838 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
7407 15839 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
7408 15840 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
7409 15841 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
7410 15842 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
7411 15843 3.142838 TGCGCGTACCCCTAGGTC 61.143 66.667 8.43 0.00 46.45 3.85
7413 15845 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
7420 15852 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
7421 15853 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
7422 15854 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
7423 15855 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
7424 15856 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
7425 15857 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
7426 15858 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
7427 15859 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
7428 15860 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
7429 15861 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
7430 15862 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
7431 15863 2.763448 CCCTCTCTCTCAGTTTACAGGG 59.237 54.545 0.00 0.00 33.59 4.45
7432 15864 3.699038 CTCCCTCTCTCTCAGTTTACAGG 59.301 52.174 0.00 0.00 0.00 4.00
7433 15865 3.130340 GCTCCCTCTCTCTCAGTTTACAG 59.870 52.174 0.00 0.00 0.00 2.74
7434 15866 3.093057 GCTCCCTCTCTCTCAGTTTACA 58.907 50.000 0.00 0.00 0.00 2.41
7435 15867 3.093057 TGCTCCCTCTCTCTCAGTTTAC 58.907 50.000 0.00 0.00 0.00 2.01
7436 15868 3.458044 TGCTCCCTCTCTCTCAGTTTA 57.542 47.619 0.00 0.00 0.00 2.01
7437 15869 2.317371 TGCTCCCTCTCTCTCAGTTT 57.683 50.000 0.00 0.00 0.00 2.66
7438 15870 2.178580 CTTGCTCCCTCTCTCTCAGTT 58.821 52.381 0.00 0.00 0.00 3.16
7439 15871 1.077005 ACTTGCTCCCTCTCTCTCAGT 59.923 52.381 0.00 0.00 0.00 3.41
7440 15872 1.851304 ACTTGCTCCCTCTCTCTCAG 58.149 55.000 0.00 0.00 0.00 3.35
7441 15873 3.204158 AGATACTTGCTCCCTCTCTCTCA 59.796 47.826 0.00 0.00 0.00 3.27
7442 15874 3.821033 GAGATACTTGCTCCCTCTCTCTC 59.179 52.174 0.00 0.00 31.70 3.20
7443 15875 3.204158 TGAGATACTTGCTCCCTCTCTCT 59.796 47.826 0.00 0.00 34.73 3.10
7444 15876 3.317993 GTGAGATACTTGCTCCCTCTCTC 59.682 52.174 0.00 0.00 34.73 3.20
7445 15877 3.295973 GTGAGATACTTGCTCCCTCTCT 58.704 50.000 0.00 0.00 34.73 3.10
7446 15878 3.027412 TGTGAGATACTTGCTCCCTCTC 58.973 50.000 0.00 0.00 34.33 3.20
7447 15879 3.107402 TGTGAGATACTTGCTCCCTCT 57.893 47.619 0.00 0.00 0.00 3.69
7448 15880 3.895232 TTGTGAGATACTTGCTCCCTC 57.105 47.619 0.00 0.00 0.00 4.30
7449 15881 4.384647 GGATTTGTGAGATACTTGCTCCCT 60.385 45.833 0.00 0.00 0.00 4.20
7450 15882 3.879892 GGATTTGTGAGATACTTGCTCCC 59.120 47.826 0.00 0.00 0.00 4.30
7451 15883 3.879892 GGGATTTGTGAGATACTTGCTCC 59.120 47.826 0.00 0.00 0.00 4.70
7452 15884 4.775236 AGGGATTTGTGAGATACTTGCTC 58.225 43.478 0.00 0.00 0.00 4.26
7453 15885 4.851639 AGGGATTTGTGAGATACTTGCT 57.148 40.909 0.00 0.00 0.00 3.91
7454 15886 5.415701 TGAAAGGGATTTGTGAGATACTTGC 59.584 40.000 0.00 0.00 0.00 4.01
7455 15887 6.881065 TCTGAAAGGGATTTGTGAGATACTTG 59.119 38.462 0.00 0.00 0.00 3.16
7456 15888 7.020827 TCTGAAAGGGATTTGTGAGATACTT 57.979 36.000 0.00 0.00 0.00 2.24
7515 15988 7.660112 TGTTCTAAACCAGATTAGTAACGACA 58.340 34.615 0.00 0.00 35.01 4.35
7558 16039 7.277539 CCAAAACTGCAAGAAACATTTTCTACA 59.722 33.333 1.67 3.61 37.43 2.74
7740 16547 2.972348 ACAGGGAGGTGTAGAAGAACA 58.028 47.619 0.00 0.00 0.00 3.18
8314 17121 3.766691 GCCGGCGGTAACTCCAGA 61.767 66.667 28.82 0.00 43.61 3.86
8958 17765 0.839946 TAAGGGAATGGCAGGAGCTC 59.160 55.000 4.71 4.71 41.70 4.09
9091 17898 5.672073 GCTGGCGTATGCAGATATACATTTG 60.672 44.000 9.59 0.00 45.35 2.32
9103 17910 0.246360 ATATAGCGCTGGCGTATGCA 59.754 50.000 22.90 0.00 46.35 3.96
9174 19154 8.956426 TGGATGCTTTCGATAGTTAAGAAAAAT 58.044 29.630 4.77 0.00 34.07 1.82
9195 19175 2.692557 TGTTGACCAAACCAAGTGGATG 59.307 45.455 3.83 2.85 39.62 3.51
9217 19197 2.006888 CCAAGACGATTAATGTGGCGT 58.993 47.619 0.00 0.00 39.99 5.68
9309 20643 1.738099 CACCTAGCACTGACGGCAC 60.738 63.158 0.00 0.00 0.00 5.01
9323 20657 0.321671 AAGATACGCACACTGCACCT 59.678 50.000 0.00 0.00 45.36 4.00
9412 20746 4.045104 GCACTCCAATAGATACTCACACG 58.955 47.826 0.00 0.00 0.00 4.49
9540 20878 3.802139 TGCACGGATCTCGATAAAATGTC 59.198 43.478 10.05 0.00 42.43 3.06
9612 20950 3.586470 TTCCTTGCAAACTGTTAGGGA 57.414 42.857 0.00 0.00 0.00 4.20
9635 20973 8.489489 TGAGGAATAATCTGCTAAATCTGAGTT 58.511 33.333 0.00 0.00 0.00 3.01
9636 20974 8.027524 TGAGGAATAATCTGCTAAATCTGAGT 57.972 34.615 0.00 0.00 0.00 3.41
9637 20975 8.772705 GTTGAGGAATAATCTGCTAAATCTGAG 58.227 37.037 0.00 0.00 0.00 3.35
9638 20976 8.489489 AGTTGAGGAATAATCTGCTAAATCTGA 58.511 33.333 0.00 0.00 0.00 3.27
9639 20977 8.557864 CAGTTGAGGAATAATCTGCTAAATCTG 58.442 37.037 0.00 0.00 0.00 2.90
9640 20978 7.228308 GCAGTTGAGGAATAATCTGCTAAATCT 59.772 37.037 7.56 0.00 42.98 2.40
9641 20979 7.358830 GCAGTTGAGGAATAATCTGCTAAATC 58.641 38.462 7.56 0.00 42.98 2.17
9642 20980 6.017605 CGCAGTTGAGGAATAATCTGCTAAAT 60.018 38.462 11.97 0.00 43.75 1.40
9643 20981 5.294306 CGCAGTTGAGGAATAATCTGCTAAA 59.706 40.000 11.97 0.00 43.75 1.85
9644 20982 4.811024 CGCAGTTGAGGAATAATCTGCTAA 59.189 41.667 11.97 0.00 43.75 3.09
9645 20983 4.141937 ACGCAGTTGAGGAATAATCTGCTA 60.142 41.667 11.97 0.00 37.78 3.49
9646 20984 3.201290 CGCAGTTGAGGAATAATCTGCT 58.799 45.455 11.97 0.00 43.75 4.24
9647 20985 2.939103 ACGCAGTTGAGGAATAATCTGC 59.061 45.455 0.00 0.00 37.78 4.26
9648 20986 5.005779 GTGTACGCAGTTGAGGAATAATCTG 59.994 44.000 0.39 0.00 37.78 2.90
9649 20987 5.109903 GTGTACGCAGTTGAGGAATAATCT 58.890 41.667 0.39 0.00 37.78 2.40
9650 20988 4.868171 TGTGTACGCAGTTGAGGAATAATC 59.132 41.667 4.65 0.00 37.78 1.75
9651 20989 4.827692 TGTGTACGCAGTTGAGGAATAAT 58.172 39.130 4.65 0.00 37.78 1.28
9652 20990 4.260139 TGTGTACGCAGTTGAGGAATAA 57.740 40.909 4.65 0.00 37.78 1.40
9653 20991 3.945981 TGTGTACGCAGTTGAGGAATA 57.054 42.857 4.65 0.00 37.78 1.75
9654 20992 2.831685 TGTGTACGCAGTTGAGGAAT 57.168 45.000 4.65 0.00 37.78 3.01
9655 20993 2.605837 TTGTGTACGCAGTTGAGGAA 57.394 45.000 9.41 0.00 37.78 3.36
9656 20994 2.299013 AGATTGTGTACGCAGTTGAGGA 59.701 45.455 9.41 0.00 37.78 3.71
9657 20995 2.668457 GAGATTGTGTACGCAGTTGAGG 59.332 50.000 9.41 0.00 37.78 3.86
9658 20996 2.668457 GGAGATTGTGTACGCAGTTGAG 59.332 50.000 9.41 0.00 37.78 3.02
9659 20997 2.299013 AGGAGATTGTGTACGCAGTTGA 59.701 45.455 9.41 0.00 37.78 3.18
9660 20998 2.688507 AGGAGATTGTGTACGCAGTTG 58.311 47.619 9.41 0.00 37.78 3.16
9701 21073 1.809684 ATGCTGGATGATGATGCTCG 58.190 50.000 0.00 0.00 0.00 5.03
9735 21107 4.202514 TGTTGAGAGAGAGAGAGACCAAGA 60.203 45.833 0.00 0.00 0.00 3.02
9736 21108 4.078537 TGTTGAGAGAGAGAGAGACCAAG 58.921 47.826 0.00 0.00 0.00 3.61
9741 21113 5.569355 AGTTCATGTTGAGAGAGAGAGAGA 58.431 41.667 0.00 0.00 0.00 3.10
9742 21114 5.902613 AGTTCATGTTGAGAGAGAGAGAG 57.097 43.478 0.00 0.00 0.00 3.20
9743 21115 7.613411 TCATTAGTTCATGTTGAGAGAGAGAGA 59.387 37.037 0.00 0.00 0.00 3.10
9744 21116 7.770201 TCATTAGTTCATGTTGAGAGAGAGAG 58.230 38.462 0.00 0.00 0.00 3.20
9783 21155 8.538856 TGAAAATTTGCTTCACGTTATTTTCTG 58.461 29.630 15.10 0.00 40.22 3.02
9793 21165 4.350346 TGTCACTGAAAATTTGCTTCACG 58.650 39.130 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.