Multiple sequence alignment - TraesCS2D01G583200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G583200 chr2D 100.000 3026 0 0 1 3026 643639361 643642386 0.000000e+00 5589
1 TraesCS2D01G583200 chr2D 93.236 1301 72 3 749 2033 643468904 643467604 0.000000e+00 1901
2 TraesCS2D01G583200 chr2D 78.155 943 175 22 1104 2027 643435244 643436174 3.380000e-159 571
3 TraesCS2D01G583200 chr2D 81.957 327 48 7 505 823 338681021 338680698 1.790000e-67 267
4 TraesCS2D01G583200 chr2D 81.902 326 50 7 505 823 497963674 497963351 1.790000e-67 267
5 TraesCS2D01G583200 chr2D 74.031 516 111 23 1102 1608 644016470 644016971 3.980000e-44 189
6 TraesCS2D01G583200 chr2D 82.379 227 21 9 2043 2256 643467539 643467319 2.400000e-41 180
7 TraesCS2D01G583200 chr2A 94.202 1259 54 10 824 2065 768429156 768430412 0.000000e+00 1903
8 TraesCS2D01G583200 chr2A 93.317 1257 69 6 824 2065 768306995 768305739 0.000000e+00 1842
9 TraesCS2D01G583200 chr2A 78.603 916 172 16 1106 2006 768266940 768266034 4.350000e-163 584
10 TraesCS2D01G583200 chr2A 87.348 411 35 7 85 492 768428768 768429164 3.560000e-124 455
11 TraesCS2D01G583200 chr2A 88.889 135 6 6 2043 2172 768305700 768305570 1.120000e-34 158
12 TraesCS2D01G583200 chr2B 93.760 1266 55 8 824 2065 793447273 793446008 0.000000e+00 1879
13 TraesCS2D01G583200 chr2B 93.932 1236 61 2 824 2045 793456154 793457389 0.000000e+00 1855
14 TraesCS2D01G583200 chr2B 78.827 921 164 23 1106 2006 793506118 793505209 2.600000e-165 592
15 TraesCS2D01G583200 chr2B 82.927 328 47 4 505 824 2458996 2458670 1.370000e-73 287
16 TraesCS2D01G583200 chr2B 81.232 341 55 4 491 823 288734716 288735055 1.790000e-67 267
17 TraesCS2D01G583200 chr2B 87.379 206 10 7 2053 2256 793445946 793445755 3.930000e-54 222
18 TraesCS2D01G583200 chr2B 84.332 217 25 6 2037 2246 793457448 793457662 1.420000e-48 204
19 TraesCS2D01G583200 chr2B 85.088 114 8 2 376 489 793456055 793456159 1.150000e-19 108
20 TraesCS2D01G583200 chr2B 82.927 123 11 1 2264 2386 793445670 793445558 5.340000e-18 102
21 TraesCS2D01G583200 chr3D 97.134 628 18 0 2399 3026 579255985 579255358 0.000000e+00 1061
22 TraesCS2D01G583200 chr3D 96.672 631 18 1 2399 3026 578518618 578517988 0.000000e+00 1046
23 TraesCS2D01G583200 chr3D 91.684 493 37 2 955 1447 306087609 306087121 0.000000e+00 680
24 TraesCS2D01G583200 chr3D 77.802 919 157 27 1106 2006 532205690 532204801 9.610000e-145 523
25 TraesCS2D01G583200 chr1D 96.979 629 17 1 2398 3026 426128912 426129538 0.000000e+00 1055
26 TraesCS2D01G583200 chr1D 96.661 629 20 1 2398 3026 408190797 408190170 0.000000e+00 1044
27 TraesCS2D01G583200 chr7D 96.815 628 19 1 2399 3026 239338338 239338964 0.000000e+00 1048
28 TraesCS2D01G583200 chr7D 96.656 628 21 0 2399 3026 613892961 613893588 0.000000e+00 1044
29 TraesCS2D01G583200 chr7D 96.367 633 21 2 2396 3026 45792963 45792331 0.000000e+00 1040
30 TraesCS2D01G583200 chr7D 95.370 648 27 3 2380 3026 50138588 50139233 0.000000e+00 1027
31 TraesCS2D01G583200 chr4D 96.661 629 21 0 2398 3026 504585567 504584939 0.000000e+00 1046
32 TraesCS2D01G583200 chr4D 83.136 338 49 7 488 818 475317092 475317428 4.900000e-78 302
33 TraesCS2D01G583200 chr4D 82.249 338 49 8 493 823 473854230 473854563 6.390000e-72 281
34 TraesCS2D01G583200 chr7B 83.180 327 46 5 505 823 98752473 98752148 1.060000e-74 291
35 TraesCS2D01G583200 chr7B 81.346 327 52 6 505 823 711845520 711845845 1.080000e-64 257
36 TraesCS2D01G583200 chr7B 85.586 111 16 0 491 601 39228738 39228848 1.910000e-22 117
37 TraesCS2D01G583200 chr1B 82.388 335 49 5 505 830 85399648 85399315 1.780000e-72 283
38 TraesCS2D01G583200 chrUn 81.982 333 48 7 492 814 92265971 92266301 3.840000e-69 272
39 TraesCS2D01G583200 chr5A 81.471 340 55 6 493 825 675297450 675297112 3.840000e-69 272
40 TraesCS2D01G583200 chr5A 79.056 339 52 8 493 823 450498914 450499241 6.570000e-52 215
41 TraesCS2D01G583200 chr7A 81.121 339 55 4 493 823 589436879 589437216 2.310000e-66 263
42 TraesCS2D01G583200 chr5B 79.941 339 59 4 493 823 109114942 109115279 1.080000e-59 241
43 TraesCS2D01G583200 chr5D 78.571 336 51 19 492 824 525253250 525253567 5.120000e-48 202
44 TraesCS2D01G583200 chr4A 82.278 158 20 4 492 641 590993187 590993344 2.450000e-26 130
45 TraesCS2D01G583200 chr4A 87.037 108 14 0 1040 1147 570232871 570232978 4.100000e-24 122
46 TraesCS2D01G583200 chr3A 83.621 116 19 0 1040 1155 88122777 88122662 3.190000e-20 110
47 TraesCS2D01G583200 chr1A 82.759 116 20 0 1040 1155 250606285 250606400 1.480000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G583200 chr2D 643639361 643642386 3025 False 5589.000000 5589 100.0000 1 3026 1 chr2D.!!$F2 3025
1 TraesCS2D01G583200 chr2D 643467319 643468904 1585 True 1040.500000 1901 87.8075 749 2256 2 chr2D.!!$R3 1507
2 TraesCS2D01G583200 chr2D 643435244 643436174 930 False 571.000000 571 78.1550 1104 2027 1 chr2D.!!$F1 923
3 TraesCS2D01G583200 chr2A 768428768 768430412 1644 False 1179.000000 1903 90.7750 85 2065 2 chr2A.!!$F1 1980
4 TraesCS2D01G583200 chr2A 768305570 768306995 1425 True 1000.000000 1842 91.1030 824 2172 2 chr2A.!!$R2 1348
5 TraesCS2D01G583200 chr2A 768266034 768266940 906 True 584.000000 584 78.6030 1106 2006 1 chr2A.!!$R1 900
6 TraesCS2D01G583200 chr2B 793445558 793447273 1715 True 734.333333 1879 88.0220 824 2386 3 chr2B.!!$R3 1562
7 TraesCS2D01G583200 chr2B 793456055 793457662 1607 False 722.333333 1855 87.7840 376 2246 3 chr2B.!!$F2 1870
8 TraesCS2D01G583200 chr2B 793505209 793506118 909 True 592.000000 592 78.8270 1106 2006 1 chr2B.!!$R2 900
9 TraesCS2D01G583200 chr3D 579255358 579255985 627 True 1061.000000 1061 97.1340 2399 3026 1 chr3D.!!$R4 627
10 TraesCS2D01G583200 chr3D 578517988 578518618 630 True 1046.000000 1046 96.6720 2399 3026 1 chr3D.!!$R3 627
11 TraesCS2D01G583200 chr3D 532204801 532205690 889 True 523.000000 523 77.8020 1106 2006 1 chr3D.!!$R2 900
12 TraesCS2D01G583200 chr1D 426128912 426129538 626 False 1055.000000 1055 96.9790 2398 3026 1 chr1D.!!$F1 628
13 TraesCS2D01G583200 chr1D 408190170 408190797 627 True 1044.000000 1044 96.6610 2398 3026 1 chr1D.!!$R1 628
14 TraesCS2D01G583200 chr7D 239338338 239338964 626 False 1048.000000 1048 96.8150 2399 3026 1 chr7D.!!$F2 627
15 TraesCS2D01G583200 chr7D 613892961 613893588 627 False 1044.000000 1044 96.6560 2399 3026 1 chr7D.!!$F3 627
16 TraesCS2D01G583200 chr7D 45792331 45792963 632 True 1040.000000 1040 96.3670 2396 3026 1 chr7D.!!$R1 630
17 TraesCS2D01G583200 chr7D 50138588 50139233 645 False 1027.000000 1027 95.3700 2380 3026 1 chr7D.!!$F1 646
18 TraesCS2D01G583200 chr4D 504584939 504585567 628 True 1046.000000 1046 96.6610 2398 3026 1 chr4D.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 637 0.030773 CGCTTATCACTCAGGCGCTA 59.969 55.0 7.64 0.0 39.42 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2171 0.161024 GTACACACGCGAGCAGAAAC 59.839 55.0 15.93 2.38 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452078 CAAGAGTAAAATGCAAGAACCCA 57.548 39.130 0.00 0.00 0.00 4.51
23 24 6.029346 CAAGAGTAAAATGCAAGAACCCAT 57.971 37.500 0.00 0.00 0.00 4.00
24 25 5.904362 AGAGTAAAATGCAAGAACCCATC 57.096 39.130 0.00 0.00 0.00 3.51
25 26 5.324409 AGAGTAAAATGCAAGAACCCATCA 58.676 37.500 0.00 0.00 0.00 3.07
26 27 5.183904 AGAGTAAAATGCAAGAACCCATCAC 59.816 40.000 0.00 0.00 0.00 3.06
27 28 4.832266 AGTAAAATGCAAGAACCCATCACA 59.168 37.500 0.00 0.00 0.00 3.58
28 29 4.895668 AAAATGCAAGAACCCATCACAT 57.104 36.364 0.00 0.00 0.00 3.21
29 30 4.895668 AAATGCAAGAACCCATCACATT 57.104 36.364 0.00 0.00 32.81 2.71
30 31 3.880047 ATGCAAGAACCCATCACATTG 57.120 42.857 0.00 0.00 0.00 2.82
31 32 2.874014 TGCAAGAACCCATCACATTGA 58.126 42.857 0.00 0.00 0.00 2.57
32 33 2.821378 TGCAAGAACCCATCACATTGAG 59.179 45.455 0.00 0.00 0.00 3.02
33 34 2.165030 GCAAGAACCCATCACATTGAGG 59.835 50.000 0.00 0.00 0.00 3.86
40 41 2.099141 CATCACATTGAGGGACGTGT 57.901 50.000 0.00 0.00 27.79 4.49
41 42 2.002586 CATCACATTGAGGGACGTGTC 58.997 52.381 0.00 0.00 27.79 3.67
42 43 1.338107 TCACATTGAGGGACGTGTCT 58.662 50.000 0.00 0.00 0.00 3.41
43 44 1.000843 TCACATTGAGGGACGTGTCTG 59.999 52.381 0.00 0.00 0.00 3.51
44 45 1.048601 ACATTGAGGGACGTGTCTGT 58.951 50.000 0.00 0.00 0.00 3.41
45 46 2.029380 CACATTGAGGGACGTGTCTGTA 60.029 50.000 0.00 0.00 0.00 2.74
46 47 2.231478 ACATTGAGGGACGTGTCTGTAG 59.769 50.000 0.00 0.00 0.00 2.74
47 48 2.281539 TTGAGGGACGTGTCTGTAGA 57.718 50.000 0.00 0.00 0.00 2.59
48 49 2.281539 TGAGGGACGTGTCTGTAGAA 57.718 50.000 0.00 0.00 0.00 2.10
49 50 2.589720 TGAGGGACGTGTCTGTAGAAA 58.410 47.619 0.00 0.00 0.00 2.52
50 51 2.960384 TGAGGGACGTGTCTGTAGAAAA 59.040 45.455 0.00 0.00 0.00 2.29
51 52 3.243636 TGAGGGACGTGTCTGTAGAAAAC 60.244 47.826 0.00 0.00 0.00 2.43
52 53 2.696707 AGGGACGTGTCTGTAGAAAACA 59.303 45.455 0.00 0.00 36.42 2.83
53 54 2.798847 GGGACGTGTCTGTAGAAAACAC 59.201 50.000 0.00 0.00 39.87 3.32
56 57 2.943843 GTGTCTGTAGAAAACACGGC 57.056 50.000 0.00 0.00 34.55 5.68
57 58 2.480845 GTGTCTGTAGAAAACACGGCT 58.519 47.619 0.00 0.00 34.55 5.52
58 59 3.645884 GTGTCTGTAGAAAACACGGCTA 58.354 45.455 0.00 0.00 34.55 3.93
59 60 3.427863 GTGTCTGTAGAAAACACGGCTAC 59.572 47.826 0.00 0.00 34.55 3.58
60 61 3.068448 TGTCTGTAGAAAACACGGCTACA 59.932 43.478 0.00 0.00 41.38 2.74
61 62 4.053295 GTCTGTAGAAAACACGGCTACAA 58.947 43.478 0.00 0.00 42.56 2.41
62 63 4.508861 GTCTGTAGAAAACACGGCTACAAA 59.491 41.667 0.00 0.00 42.56 2.83
63 64 5.006941 GTCTGTAGAAAACACGGCTACAAAA 59.993 40.000 0.00 0.00 42.56 2.44
64 65 5.761234 TCTGTAGAAAACACGGCTACAAAAT 59.239 36.000 0.00 0.00 42.56 1.82
65 66 6.261381 TCTGTAGAAAACACGGCTACAAAATT 59.739 34.615 0.00 0.00 42.56 1.82
66 67 6.797454 TGTAGAAAACACGGCTACAAAATTT 58.203 32.000 0.00 0.00 40.88 1.82
67 68 7.259161 TGTAGAAAACACGGCTACAAAATTTT 58.741 30.769 0.00 0.00 40.88 1.82
68 69 6.582437 AGAAAACACGGCTACAAAATTTTG 57.418 33.333 25.73 25.73 43.62 2.44
69 70 6.334202 AGAAAACACGGCTACAAAATTTTGA 58.666 32.000 32.20 17.12 40.55 2.69
70 71 5.959652 AAACACGGCTACAAAATTTTGAC 57.040 34.783 32.20 21.06 40.55 3.18
71 72 4.911514 ACACGGCTACAAAATTTTGACT 57.088 36.364 32.20 16.57 40.55 3.41
72 73 4.606961 ACACGGCTACAAAATTTTGACTG 58.393 39.130 32.20 25.32 40.55 3.51
73 74 4.336993 ACACGGCTACAAAATTTTGACTGA 59.663 37.500 32.20 15.57 40.55 3.41
74 75 5.009610 ACACGGCTACAAAATTTTGACTGAT 59.990 36.000 32.20 15.26 40.55 2.90
75 76 6.205853 ACACGGCTACAAAATTTTGACTGATA 59.794 34.615 32.20 15.54 40.55 2.15
76 77 7.081349 CACGGCTACAAAATTTTGACTGATAA 58.919 34.615 32.20 10.81 40.55 1.75
77 78 7.593273 CACGGCTACAAAATTTTGACTGATAAA 59.407 33.333 32.20 9.69 40.55 1.40
78 79 8.138712 ACGGCTACAAAATTTTGACTGATAAAA 58.861 29.630 32.20 8.85 40.55 1.52
79 80 9.139174 CGGCTACAAAATTTTGACTGATAAAAT 57.861 29.630 32.20 12.04 40.55 1.82
89 90 7.827819 TTTGACTGATAAAATCCTGTCTACG 57.172 36.000 0.00 0.00 34.79 3.51
94 95 8.019656 ACTGATAAAATCCTGTCTACGGTAAT 57.980 34.615 0.00 0.00 0.00 1.89
95 96 8.483758 ACTGATAAAATCCTGTCTACGGTAATT 58.516 33.333 0.00 0.00 0.00 1.40
118 119 4.914312 TTTCTGCGTAAACCACTAATCG 57.086 40.909 0.00 0.00 0.00 3.34
120 121 1.326548 CTGCGTAAACCACTAATCGGC 59.673 52.381 0.00 0.00 0.00 5.54
121 122 1.337917 TGCGTAAACCACTAATCGGCA 60.338 47.619 0.00 0.00 0.00 5.69
127 128 5.694910 CGTAAACCACTAATCGGCAGATTAT 59.305 40.000 17.87 6.57 45.27 1.28
142 143 6.615088 GGCAGATTATAATGTGTTAGGCATG 58.385 40.000 20.26 0.00 32.69 4.06
143 144 6.207417 GGCAGATTATAATGTGTTAGGCATGT 59.793 38.462 20.26 0.00 32.69 3.21
169 170 1.064017 ACAGTGGGTCCTGCTTTTCAA 60.064 47.619 0.00 0.00 35.83 2.69
171 172 2.029649 CAGTGGGTCCTGCTTTTCAATG 60.030 50.000 0.00 0.00 0.00 2.82
172 173 1.273327 GTGGGTCCTGCTTTTCAATGG 59.727 52.381 0.00 0.00 0.00 3.16
184 185 2.867287 TTCAATGGCATGGCATAACG 57.133 45.000 32.36 23.09 0.00 3.18
187 188 1.404748 CAATGGCATGGCATAACGACA 59.595 47.619 32.36 4.56 36.70 4.35
274 278 6.090483 TCAAATATCACTTTCCCGCAAAAA 57.910 33.333 0.00 0.00 0.00 1.94
275 279 6.696411 TCAAATATCACTTTCCCGCAAAAAT 58.304 32.000 0.00 0.00 0.00 1.82
286 290 8.845227 ACTTTCCCGCAAAAATTAATTTCAAAT 58.155 25.926 13.68 0.00 0.00 2.32
343 347 3.805422 CACTTGTTGTCATGCAAAGCAAT 59.195 39.130 0.00 0.00 43.62 3.56
405 409 9.567776 TTTCCATGTAACTAGTTTGAATCTTCA 57.432 29.630 14.49 2.01 34.92 3.02
422 427 8.753133 TGAATCTTCAAAATACTAGAGCAGAGA 58.247 33.333 0.00 0.00 33.55 3.10
446 451 5.478332 ACATCTTAAAGAAAGGAAGCCCAAG 59.522 40.000 0.00 0.00 35.75 3.61
447 452 5.061721 TCTTAAAGAAAGGAAGCCCAAGT 57.938 39.130 0.00 0.00 35.75 3.16
448 453 6.195600 TCTTAAAGAAAGGAAGCCCAAGTA 57.804 37.500 0.00 0.00 35.75 2.24
449 454 6.790319 TCTTAAAGAAAGGAAGCCCAAGTAT 58.210 36.000 0.00 0.00 35.75 2.12
450 455 6.659242 TCTTAAAGAAAGGAAGCCCAAGTATG 59.341 38.462 0.00 0.00 35.75 2.39
451 456 4.657814 AAGAAAGGAAGCCCAAGTATGA 57.342 40.909 0.00 0.00 33.88 2.15
452 457 4.227864 AGAAAGGAAGCCCAAGTATGAG 57.772 45.455 0.00 0.00 33.88 2.90
453 458 3.846588 AGAAAGGAAGCCCAAGTATGAGA 59.153 43.478 0.00 0.00 33.88 3.27
454 459 4.289672 AGAAAGGAAGCCCAAGTATGAGAA 59.710 41.667 0.00 0.00 33.88 2.87
455 460 3.922171 AGGAAGCCCAAGTATGAGAAG 57.078 47.619 0.00 0.00 33.88 2.85
460 465 4.078639 AGCCCAAGTATGAGAAGTATGC 57.921 45.455 0.00 0.00 0.00 3.14
483 488 4.100035 CCCTACATCTCACTGTCATGCTTA 59.900 45.833 0.00 0.00 0.00 3.09
484 489 5.221601 CCCTACATCTCACTGTCATGCTTAT 60.222 44.000 0.00 0.00 0.00 1.73
485 490 5.925397 CCTACATCTCACTGTCATGCTTATC 59.075 44.000 0.00 0.00 0.00 1.75
486 491 5.611128 ACATCTCACTGTCATGCTTATCT 57.389 39.130 0.00 0.00 0.00 1.98
487 492 5.987098 ACATCTCACTGTCATGCTTATCTT 58.013 37.500 0.00 0.00 0.00 2.40
488 493 6.413052 ACATCTCACTGTCATGCTTATCTTT 58.587 36.000 0.00 0.00 0.00 2.52
489 494 6.315642 ACATCTCACTGTCATGCTTATCTTTG 59.684 38.462 0.00 0.00 0.00 2.77
490 495 6.041423 TCTCACTGTCATGCTTATCTTTGA 57.959 37.500 0.00 0.00 0.00 2.69
491 496 5.871524 TCTCACTGTCATGCTTATCTTTGAC 59.128 40.000 0.00 0.00 39.11 3.18
492 497 4.627035 TCACTGTCATGCTTATCTTTGACG 59.373 41.667 0.00 0.00 41.02 4.35
493 498 3.935203 ACTGTCATGCTTATCTTTGACGG 59.065 43.478 8.72 8.72 46.25 4.79
494 499 2.677836 TGTCATGCTTATCTTTGACGGC 59.322 45.455 0.00 0.00 41.02 5.68
495 500 2.677836 GTCATGCTTATCTTTGACGGCA 59.322 45.455 0.00 0.00 30.29 5.69
496 501 3.126858 GTCATGCTTATCTTTGACGGCAA 59.873 43.478 0.00 0.00 33.44 4.52
497 502 3.755905 TCATGCTTATCTTTGACGGCAAA 59.244 39.130 17.10 17.10 41.47 3.68
498 503 4.217334 TCATGCTTATCTTTGACGGCAAAA 59.783 37.500 18.75 9.34 42.96 2.44
499 504 4.782019 TGCTTATCTTTGACGGCAAAAT 57.218 36.364 18.75 15.53 42.96 1.82
500 505 4.484236 TGCTTATCTTTGACGGCAAAATG 58.516 39.130 18.75 7.30 42.96 2.32
501 506 3.859386 GCTTATCTTTGACGGCAAAATGG 59.141 43.478 18.75 6.50 42.96 3.16
502 507 4.380444 GCTTATCTTTGACGGCAAAATGGA 60.380 41.667 18.75 12.18 42.96 3.41
503 508 3.575965 ATCTTTGACGGCAAAATGGAC 57.424 42.857 18.75 0.00 42.96 4.02
504 509 2.302260 TCTTTGACGGCAAAATGGACA 58.698 42.857 18.75 0.00 42.96 4.02
505 510 2.690497 TCTTTGACGGCAAAATGGACAA 59.310 40.909 18.75 0.00 42.96 3.18
506 511 3.131223 TCTTTGACGGCAAAATGGACAAA 59.869 39.130 18.75 0.00 42.96 2.83
507 512 3.742433 TTGACGGCAAAATGGACAAAT 57.258 38.095 0.00 0.00 0.00 2.32
508 513 3.742433 TGACGGCAAAATGGACAAATT 57.258 38.095 0.00 0.00 0.00 1.82
509 514 4.065321 TGACGGCAAAATGGACAAATTT 57.935 36.364 0.00 0.00 0.00 1.82
510 515 3.806521 TGACGGCAAAATGGACAAATTTG 59.193 39.130 16.67 16.67 37.17 2.32
511 516 4.054671 GACGGCAAAATGGACAAATTTGA 58.945 39.130 24.64 2.69 36.41 2.69
512 517 3.807071 ACGGCAAAATGGACAAATTTGAC 59.193 39.130 24.64 17.82 38.43 3.18
513 518 3.186205 CGGCAAAATGGACAAATTTGACC 59.814 43.478 26.48 26.48 38.55 4.02
514 519 4.388485 GGCAAAATGGACAAATTTGACCT 58.612 39.130 30.62 18.38 42.31 3.85
515 520 4.452114 GGCAAAATGGACAAATTTGACCTC 59.548 41.667 30.62 16.85 42.31 3.85
516 521 5.055812 GCAAAATGGACAAATTTGACCTCA 58.944 37.500 30.62 17.91 42.31 3.86
517 522 5.178067 GCAAAATGGACAAATTTGACCTCAG 59.822 40.000 30.62 19.91 42.31 3.35
518 523 5.473066 AAATGGACAAATTTGACCTCAGG 57.527 39.130 30.62 0.00 42.31 3.86
519 524 2.875296 TGGACAAATTTGACCTCAGGG 58.125 47.619 30.62 3.50 42.31 4.45
520 525 1.546029 GGACAAATTTGACCTCAGGGC 59.454 52.381 26.10 0.00 39.42 5.19
521 526 1.200020 GACAAATTTGACCTCAGGGCG 59.800 52.381 24.64 0.00 35.63 6.13
522 527 1.202879 ACAAATTTGACCTCAGGGCGA 60.203 47.619 24.64 0.00 35.63 5.54
523 528 1.885887 CAAATTTGACCTCAGGGCGAA 59.114 47.619 13.08 0.00 35.63 4.70
524 529 2.286365 AATTTGACCTCAGGGCGAAA 57.714 45.000 2.19 0.00 35.63 3.46
525 530 1.534729 ATTTGACCTCAGGGCGAAAC 58.465 50.000 2.19 0.00 35.63 2.78
526 531 0.472471 TTTGACCTCAGGGCGAAACT 59.528 50.000 0.00 0.00 35.63 2.66
527 532 1.344065 TTGACCTCAGGGCGAAACTA 58.656 50.000 0.00 0.00 35.63 2.24
528 533 1.568504 TGACCTCAGGGCGAAACTAT 58.431 50.000 0.00 0.00 35.63 2.12
529 534 1.906574 TGACCTCAGGGCGAAACTATT 59.093 47.619 0.00 0.00 35.63 1.73
530 535 2.304761 TGACCTCAGGGCGAAACTATTT 59.695 45.455 0.00 0.00 35.63 1.40
531 536 2.937149 GACCTCAGGGCGAAACTATTTC 59.063 50.000 0.00 0.00 35.63 2.17
532 537 2.304761 ACCTCAGGGCGAAACTATTTCA 59.695 45.455 0.00 0.00 36.49 2.69
533 538 2.678336 CCTCAGGGCGAAACTATTTCAC 59.322 50.000 2.50 0.00 39.63 3.18
534 539 3.334691 CTCAGGGCGAAACTATTTCACA 58.665 45.455 2.50 0.00 39.63 3.58
535 540 3.745799 TCAGGGCGAAACTATTTCACAA 58.254 40.909 2.50 0.00 39.63 3.33
536 541 4.138290 TCAGGGCGAAACTATTTCACAAA 58.862 39.130 2.50 0.00 39.63 2.83
537 542 4.023536 TCAGGGCGAAACTATTTCACAAAC 60.024 41.667 2.50 0.00 39.63 2.93
538 543 4.023193 CAGGGCGAAACTATTTCACAAACT 60.023 41.667 2.50 0.00 39.63 2.66
539 544 5.180492 CAGGGCGAAACTATTTCACAAACTA 59.820 40.000 2.50 0.00 39.63 2.24
540 545 5.766174 AGGGCGAAACTATTTCACAAACTAA 59.234 36.000 2.50 0.00 39.63 2.24
541 546 6.263617 AGGGCGAAACTATTTCACAAACTAAA 59.736 34.615 2.50 0.00 39.63 1.85
542 547 6.361481 GGGCGAAACTATTTCACAAACTAAAC 59.639 38.462 2.50 0.00 39.63 2.01
543 548 7.136772 GGCGAAACTATTTCACAAACTAAACT 58.863 34.615 2.50 0.00 39.63 2.66
544 549 8.284693 GGCGAAACTATTTCACAAACTAAACTA 58.715 33.333 2.50 0.00 39.63 2.24
545 550 9.821662 GCGAAACTATTTCACAAACTAAACTAT 57.178 29.630 2.50 0.00 39.63 2.12
571 576 9.730420 TTTTTAAAAGTATTTCACTCAGCTGAC 57.270 29.630 13.74 0.45 37.28 3.51
572 577 5.948992 AAAAGTATTTCACTCAGCTGACC 57.051 39.130 13.74 0.00 37.28 4.02
573 578 3.618690 AGTATTTCACTCAGCTGACCC 57.381 47.619 13.74 0.00 28.33 4.46
574 579 2.237392 AGTATTTCACTCAGCTGACCCC 59.763 50.000 13.74 0.00 28.33 4.95
575 580 1.366319 ATTTCACTCAGCTGACCCCT 58.634 50.000 13.74 0.00 0.00 4.79
576 581 2.024176 TTTCACTCAGCTGACCCCTA 57.976 50.000 13.74 0.00 0.00 3.53
577 582 2.024176 TTCACTCAGCTGACCCCTAA 57.976 50.000 13.74 0.24 0.00 2.69
578 583 2.254152 TCACTCAGCTGACCCCTAAT 57.746 50.000 13.74 0.00 0.00 1.73
579 584 1.833630 TCACTCAGCTGACCCCTAATG 59.166 52.381 13.74 2.78 0.00 1.90
580 585 1.556911 CACTCAGCTGACCCCTAATGT 59.443 52.381 13.74 3.50 0.00 2.71
581 586 2.766263 CACTCAGCTGACCCCTAATGTA 59.234 50.000 13.74 0.00 0.00 2.29
582 587 3.389329 CACTCAGCTGACCCCTAATGTAT 59.611 47.826 13.74 0.00 0.00 2.29
583 588 4.588951 CACTCAGCTGACCCCTAATGTATA 59.411 45.833 13.74 0.00 0.00 1.47
584 589 4.835615 ACTCAGCTGACCCCTAATGTATAG 59.164 45.833 13.74 0.00 0.00 1.31
585 590 3.578716 TCAGCTGACCCCTAATGTATAGC 59.421 47.826 13.74 0.00 0.00 2.97
586 591 2.563179 AGCTGACCCCTAATGTATAGCG 59.437 50.000 0.00 0.00 33.61 4.26
587 592 2.299297 GCTGACCCCTAATGTATAGCGT 59.701 50.000 0.00 0.00 0.00 5.07
588 593 3.614390 GCTGACCCCTAATGTATAGCGTC 60.614 52.174 0.00 0.00 0.00 5.19
589 594 2.895404 TGACCCCTAATGTATAGCGTCC 59.105 50.000 0.00 0.00 0.00 4.79
590 595 1.891150 ACCCCTAATGTATAGCGTCCG 59.109 52.381 0.00 0.00 0.00 4.79
591 596 2.165167 CCCCTAATGTATAGCGTCCGA 58.835 52.381 0.00 0.00 0.00 4.55
592 597 2.094854 CCCCTAATGTATAGCGTCCGAC 60.095 54.545 0.00 0.00 0.00 4.79
593 598 2.555325 CCCTAATGTATAGCGTCCGACA 59.445 50.000 0.00 0.00 0.00 4.35
594 599 3.366070 CCCTAATGTATAGCGTCCGACAG 60.366 52.174 0.00 0.00 0.00 3.51
595 600 2.135664 AATGTATAGCGTCCGACAGC 57.864 50.000 0.00 3.52 0.00 4.40
596 601 1.029681 ATGTATAGCGTCCGACAGCA 58.970 50.000 14.76 4.85 35.48 4.41
597 602 0.812549 TGTATAGCGTCCGACAGCAA 59.187 50.000 14.76 1.58 35.48 3.91
598 603 1.202256 TGTATAGCGTCCGACAGCAAG 60.202 52.381 14.76 0.00 35.48 4.01
599 604 0.384309 TATAGCGTCCGACAGCAAGG 59.616 55.000 14.76 0.00 35.48 3.61
600 605 2.907897 ATAGCGTCCGACAGCAAGGC 62.908 60.000 14.76 2.77 35.48 4.35
602 607 3.114616 CGTCCGACAGCAAGGCAG 61.115 66.667 0.00 0.00 0.00 4.85
603 608 3.426568 GTCCGACAGCAAGGCAGC 61.427 66.667 0.00 0.00 0.00 5.25
607 612 4.099170 GACAGCAAGGCAGCGCAG 62.099 66.667 11.47 1.31 40.15 5.18
608 613 4.943252 ACAGCAAGGCAGCGCAGT 62.943 61.111 11.47 0.00 40.15 4.40
609 614 4.400109 CAGCAAGGCAGCGCAGTG 62.400 66.667 11.47 0.00 40.15 3.66
621 626 3.489731 GCAGTGCAGCGCTTATCA 58.510 55.556 7.50 2.91 0.00 2.15
622 627 1.061570 GCAGTGCAGCGCTTATCAC 59.938 57.895 20.39 20.39 0.00 3.06
623 628 1.364626 GCAGTGCAGCGCTTATCACT 61.365 55.000 23.31 23.31 40.08 3.41
624 629 0.649475 CAGTGCAGCGCTTATCACTC 59.351 55.000 25.13 8.71 37.66 3.51
625 630 0.247460 AGTGCAGCGCTTATCACTCA 59.753 50.000 23.31 6.23 35.05 3.41
626 631 0.649475 GTGCAGCGCTTATCACTCAG 59.351 55.000 20.58 4.45 0.00 3.35
627 632 0.460811 TGCAGCGCTTATCACTCAGG 60.461 55.000 7.50 0.00 0.00 3.86
628 633 1.770085 GCAGCGCTTATCACTCAGGC 61.770 60.000 7.50 0.00 0.00 4.85
630 635 3.313750 CGCTTATCACTCAGGCGC 58.686 61.111 0.00 0.00 39.42 6.53
631 636 1.227089 CGCTTATCACTCAGGCGCT 60.227 57.895 7.64 0.00 39.42 5.92
632 637 0.030773 CGCTTATCACTCAGGCGCTA 59.969 55.000 7.64 0.00 39.42 4.26
633 638 1.492720 GCTTATCACTCAGGCGCTAC 58.507 55.000 7.64 0.00 0.00 3.58
634 639 1.202417 GCTTATCACTCAGGCGCTACA 60.202 52.381 7.64 0.00 0.00 2.74
635 640 2.546795 GCTTATCACTCAGGCGCTACAT 60.547 50.000 7.64 0.00 0.00 2.29
636 641 3.312828 CTTATCACTCAGGCGCTACATC 58.687 50.000 7.64 0.00 0.00 3.06
637 642 1.407936 ATCACTCAGGCGCTACATCT 58.592 50.000 7.64 0.00 0.00 2.90
638 643 0.457443 TCACTCAGGCGCTACATCTG 59.543 55.000 7.64 5.73 0.00 2.90
639 644 0.174389 CACTCAGGCGCTACATCTGT 59.826 55.000 7.64 0.00 0.00 3.41
640 645 0.174389 ACTCAGGCGCTACATCTGTG 59.826 55.000 7.64 9.16 0.00 3.66
641 646 1.150567 CTCAGGCGCTACATCTGTGC 61.151 60.000 7.64 0.00 39.88 4.57
642 647 1.448365 CAGGCGCTACATCTGTGCA 60.448 57.895 7.64 0.00 42.10 4.57
643 648 1.153489 AGGCGCTACATCTGTGCAG 60.153 57.895 7.64 0.00 42.10 4.41
644 649 2.705826 GCGCTACATCTGTGCAGC 59.294 61.111 0.00 0.00 40.63 5.25
646 651 2.705826 GCTACATCTGTGCAGCGC 59.294 61.111 0.00 0.00 35.19 5.92
647 652 2.817423 GCTACATCTGTGCAGCGCC 61.817 63.158 2.29 0.00 35.19 6.53
648 653 2.125147 TACATCTGTGCAGCGCCC 60.125 61.111 2.29 0.00 0.00 6.13
670 675 4.063529 GCAAGGTGCTGCACTACA 57.936 55.556 29.54 0.00 42.17 2.74
671 676 1.576421 GCAAGGTGCTGCACTACAC 59.424 57.895 29.54 14.73 42.17 2.90
674 679 2.030562 GGTGCTGCACTACACCGT 59.969 61.111 29.54 0.00 46.32 4.83
675 680 2.317609 GGTGCTGCACTACACCGTG 61.318 63.158 29.54 0.00 46.32 4.94
681 686 3.081133 CACTACACCGTGCATCGC 58.919 61.111 0.00 0.00 38.35 4.58
682 687 2.125673 ACTACACCGTGCATCGCC 60.126 61.111 0.00 0.00 38.35 5.54
683 688 2.184322 CTACACCGTGCATCGCCT 59.816 61.111 0.00 0.00 38.35 5.52
684 689 2.125713 TACACCGTGCATCGCCTG 60.126 61.111 0.00 0.00 38.35 4.85
685 690 2.835701 CTACACCGTGCATCGCCTGT 62.836 60.000 0.00 2.98 38.35 4.00
686 691 2.829043 TACACCGTGCATCGCCTGTC 62.829 60.000 0.00 0.00 38.35 3.51
687 692 3.695606 ACCGTGCATCGCCTGTCT 61.696 61.111 0.00 0.00 38.35 3.41
688 693 2.887568 CCGTGCATCGCCTGTCTC 60.888 66.667 0.00 0.00 38.35 3.36
689 694 2.182791 CGTGCATCGCCTGTCTCT 59.817 61.111 0.00 0.00 0.00 3.10
690 695 1.433471 CGTGCATCGCCTGTCTCTA 59.567 57.895 0.00 0.00 0.00 2.43
691 696 0.179137 CGTGCATCGCCTGTCTCTAA 60.179 55.000 0.00 0.00 0.00 2.10
692 697 1.565305 GTGCATCGCCTGTCTCTAAG 58.435 55.000 0.00 0.00 0.00 2.18
693 698 0.461548 TGCATCGCCTGTCTCTAAGG 59.538 55.000 0.00 0.00 37.91 2.69
694 699 0.747255 GCATCGCCTGTCTCTAAGGA 59.253 55.000 0.00 0.00 36.91 3.36
695 700 1.269517 GCATCGCCTGTCTCTAAGGAG 60.270 57.143 0.00 0.00 36.91 3.69
696 701 1.036707 ATCGCCTGTCTCTAAGGAGC 58.963 55.000 0.00 0.00 39.31 4.70
697 702 1.038130 TCGCCTGTCTCTAAGGAGCC 61.038 60.000 0.00 0.00 39.31 4.70
698 703 1.439644 GCCTGTCTCTAAGGAGCCG 59.560 63.158 0.00 0.00 39.31 5.52
699 704 1.439644 CCTGTCTCTAAGGAGCCGC 59.560 63.158 0.00 0.00 39.31 6.53
700 705 1.323271 CCTGTCTCTAAGGAGCCGCA 61.323 60.000 0.00 0.00 39.31 5.69
701 706 0.749649 CTGTCTCTAAGGAGCCGCAT 59.250 55.000 0.00 0.00 39.31 4.73
702 707 1.957177 CTGTCTCTAAGGAGCCGCATA 59.043 52.381 0.00 0.00 39.31 3.14
703 708 1.957177 TGTCTCTAAGGAGCCGCATAG 59.043 52.381 0.00 0.00 39.31 2.23
704 709 1.957877 GTCTCTAAGGAGCCGCATAGT 59.042 52.381 0.00 0.00 39.31 2.12
705 710 3.147629 GTCTCTAAGGAGCCGCATAGTA 58.852 50.000 0.00 0.00 39.31 1.82
706 711 3.189702 GTCTCTAAGGAGCCGCATAGTAG 59.810 52.174 0.00 0.00 39.31 2.57
707 712 3.072622 TCTCTAAGGAGCCGCATAGTAGA 59.927 47.826 0.00 0.00 39.31 2.59
708 713 3.413327 TCTAAGGAGCCGCATAGTAGAG 58.587 50.000 0.00 0.00 0.00 2.43
709 714 2.074729 AAGGAGCCGCATAGTAGAGT 57.925 50.000 0.00 0.00 0.00 3.24
710 715 1.323412 AGGAGCCGCATAGTAGAGTG 58.677 55.000 0.00 0.00 0.00 3.51
711 716 0.319125 GGAGCCGCATAGTAGAGTGC 60.319 60.000 0.00 0.00 37.97 4.40
712 717 0.385751 GAGCCGCATAGTAGAGTGCA 59.614 55.000 0.00 0.00 41.32 4.57
713 718 0.387202 AGCCGCATAGTAGAGTGCAG 59.613 55.000 0.00 0.00 41.32 4.41
714 719 0.103208 GCCGCATAGTAGAGTGCAGT 59.897 55.000 0.00 0.00 41.32 4.40
715 720 1.845266 CCGCATAGTAGAGTGCAGTG 58.155 55.000 0.00 0.00 41.32 3.66
716 721 1.135139 CCGCATAGTAGAGTGCAGTGT 59.865 52.381 0.00 0.00 41.32 3.55
717 722 2.455032 CGCATAGTAGAGTGCAGTGTC 58.545 52.381 0.00 0.00 41.32 3.67
718 723 2.098280 CGCATAGTAGAGTGCAGTGTCT 59.902 50.000 0.00 0.00 41.32 3.41
719 724 3.428180 CGCATAGTAGAGTGCAGTGTCTT 60.428 47.826 0.00 0.00 41.32 3.01
720 725 3.862267 GCATAGTAGAGTGCAGTGTCTTG 59.138 47.826 0.00 0.00 40.94 3.02
721 726 2.447244 AGTAGAGTGCAGTGTCTTGC 57.553 50.000 0.00 0.00 44.33 4.01
722 727 1.001406 AGTAGAGTGCAGTGTCTTGCC 59.999 52.381 0.00 0.00 43.43 4.52
723 728 0.038251 TAGAGTGCAGTGTCTTGCCG 60.038 55.000 0.00 0.00 43.43 5.69
724 729 1.595382 GAGTGCAGTGTCTTGCCGT 60.595 57.895 0.00 0.00 43.43 5.68
725 730 1.560860 GAGTGCAGTGTCTTGCCGTC 61.561 60.000 0.00 0.00 43.43 4.79
726 731 2.661537 TGCAGTGTCTTGCCGTCG 60.662 61.111 0.00 0.00 43.43 5.12
727 732 3.414700 GCAGTGTCTTGCCGTCGG 61.415 66.667 6.99 6.99 38.13 4.79
728 733 2.338620 CAGTGTCTTGCCGTCGGA 59.661 61.111 17.49 0.00 0.00 4.55
729 734 2.022129 CAGTGTCTTGCCGTCGGAC 61.022 63.158 17.49 7.13 0.00 4.79
730 735 3.103911 GTGTCTTGCCGTCGGACG 61.104 66.667 22.88 22.88 42.11 4.79
731 736 3.289062 TGTCTTGCCGTCGGACGA 61.289 61.111 30.33 10.01 46.05 4.20
732 737 2.181021 GTCTTGCCGTCGGACGAT 59.819 61.111 30.33 0.00 46.05 3.73
733 738 2.158959 GTCTTGCCGTCGGACGATG 61.159 63.158 30.33 16.24 46.05 3.84
734 739 2.126071 CTTGCCGTCGGACGATGT 60.126 61.111 30.33 0.00 46.05 3.06
735 740 1.138036 CTTGCCGTCGGACGATGTA 59.862 57.895 30.33 12.34 46.05 2.29
736 741 1.138047 CTTGCCGTCGGACGATGTAC 61.138 60.000 30.33 14.49 46.05 2.90
737 742 1.864725 TTGCCGTCGGACGATGTACA 61.865 55.000 30.33 16.65 46.05 2.90
738 743 1.153978 GCCGTCGGACGATGTACAA 60.154 57.895 30.33 0.00 46.05 2.41
739 744 0.733566 GCCGTCGGACGATGTACAAA 60.734 55.000 30.33 0.00 46.05 2.83
740 745 1.700523 CCGTCGGACGATGTACAAAA 58.299 50.000 30.33 0.00 46.05 2.44
741 746 1.652124 CCGTCGGACGATGTACAAAAG 59.348 52.381 30.33 6.89 46.05 2.27
742 747 1.652124 CGTCGGACGATGTACAAAAGG 59.348 52.381 25.29 0.00 46.05 3.11
743 748 1.997606 GTCGGACGATGTACAAAAGGG 59.002 52.381 0.00 0.00 0.00 3.95
744 749 1.619827 TCGGACGATGTACAAAAGGGT 59.380 47.619 0.00 0.00 0.00 4.34
745 750 1.997606 CGGACGATGTACAAAAGGGTC 59.002 52.381 0.00 3.32 0.00 4.46
746 751 2.610976 CGGACGATGTACAAAAGGGTCA 60.611 50.000 0.00 0.00 0.00 4.02
747 752 3.000727 GGACGATGTACAAAAGGGTCAG 58.999 50.000 0.00 0.00 0.00 3.51
804 809 8.924511 TTGTGAAATACTTTTCCTCTGAGATT 57.075 30.769 6.17 0.00 40.49 2.40
926 932 6.717413 CGTTTAGCTTATAAATAACGGCCAA 58.283 36.000 2.24 0.00 35.89 4.52
979 1003 0.603569 AGCTTACTCCACAGTCCACG 59.396 55.000 0.00 0.00 33.62 4.94
1636 1685 0.318441 CTGCCCGTTCTTCTCAGACA 59.682 55.000 0.00 0.00 0.00 3.41
1896 1945 1.601419 CCAAGTCCATGGCCAAGCTG 61.601 60.000 10.96 2.97 32.78 4.24
2011 2066 2.591915 GGTGACGAGGAGGGATTCA 58.408 57.895 0.00 0.00 0.00 2.57
2036 2091 1.102978 TCTGCCTGATGTCGATCGAA 58.897 50.000 21.31 10.78 0.00 3.71
2050 2171 5.915196 TGTCGATCGAATGATTAGCTGTTAG 59.085 40.000 21.31 0.00 34.09 2.34
2141 2294 1.082300 CACTGAGTGCTTGCTTGCG 60.082 57.895 0.00 0.00 35.36 4.85
2187 2360 9.134734 GAAATTTCACCGAAATATTTGTAAGCA 57.865 29.630 13.40 0.00 40.77 3.91
2215 2388 4.256110 CTCAAAATTTTGGGCCAGAATCC 58.744 43.478 26.45 0.00 38.66 3.01
2278 2527 5.524284 AGCATCTACAGTATCAAACTAGCG 58.476 41.667 0.00 0.00 35.76 4.26
2283 2532 4.514781 ACAGTATCAAACTAGCGTCACA 57.485 40.909 0.00 0.00 35.76 3.58
2284 2533 4.235360 ACAGTATCAAACTAGCGTCACAC 58.765 43.478 0.00 0.00 35.76 3.82
2285 2534 3.612860 CAGTATCAAACTAGCGTCACACC 59.387 47.826 0.00 0.00 35.76 4.16
2292 2541 1.535462 ACTAGCGTCACACCAAAATGC 59.465 47.619 0.00 0.00 0.00 3.56
2301 2550 4.923281 GTCACACCAAAATGCATAAAGTCC 59.077 41.667 0.00 0.00 0.00 3.85
2306 2555 6.038356 CACCAAAATGCATAAAGTCCTGATC 58.962 40.000 0.00 0.00 0.00 2.92
2309 2558 2.689553 TGCATAAAGTCCTGATCGCA 57.310 45.000 0.00 0.00 0.00 5.10
2310 2559 2.984562 TGCATAAAGTCCTGATCGCAA 58.015 42.857 0.00 0.00 0.00 4.85
2311 2560 3.342719 TGCATAAAGTCCTGATCGCAAA 58.657 40.909 0.00 0.00 0.00 3.68
2312 2561 3.755905 TGCATAAAGTCCTGATCGCAAAA 59.244 39.130 0.00 0.00 0.00 2.44
2313 2562 4.217334 TGCATAAAGTCCTGATCGCAAAAA 59.783 37.500 0.00 0.00 0.00 1.94
2356 2605 3.397955 AGTCTTAACACCCCATGAAACCT 59.602 43.478 0.00 0.00 0.00 3.50
2366 2615 2.433970 CCCATGAAACCTTGGTTGTGTT 59.566 45.455 5.74 0.00 0.00 3.32
2373 2622 1.272203 ACCTTGGTTGTGTTGTCACCA 60.272 47.619 0.00 0.00 43.26 4.17
2389 2638 5.788450 TGTCACCAGCAAAAAGAAAGAAAA 58.212 33.333 0.00 0.00 0.00 2.29
2390 2639 5.868801 TGTCACCAGCAAAAAGAAAGAAAAG 59.131 36.000 0.00 0.00 0.00 2.27
2391 2640 6.099341 GTCACCAGCAAAAAGAAAGAAAAGA 58.901 36.000 0.00 0.00 0.00 2.52
2393 2642 7.117667 GTCACCAGCAAAAAGAAAGAAAAGAAA 59.882 33.333 0.00 0.00 0.00 2.52
2394 2643 7.117667 TCACCAGCAAAAAGAAAGAAAAGAAAC 59.882 33.333 0.00 0.00 0.00 2.78
2395 2644 6.371548 ACCAGCAAAAAGAAAGAAAAGAAACC 59.628 34.615 0.00 0.00 0.00 3.27
2396 2645 6.455513 CCAGCAAAAAGAAAGAAAAGAAACCG 60.456 38.462 0.00 0.00 0.00 4.44
2403 2652 7.619964 AAGAAAGAAAAGAAACCGTCACTAA 57.380 32.000 0.00 0.00 0.00 2.24
2406 2655 9.333724 AGAAAGAAAAGAAACCGTCACTAATAA 57.666 29.630 0.00 0.00 0.00 1.40
2427 2676 2.668144 AAAAGGGTCATTTGTCCCGA 57.332 45.000 7.15 0.00 46.13 5.14
2453 2702 0.325296 AGGCCCATCTGTCTCGGTTA 60.325 55.000 0.00 0.00 0.00 2.85
2536 2785 3.866582 GGGACAGATGGGCCTCCG 61.867 72.222 4.53 0.00 35.24 4.63
2814 3067 9.130312 GCATGTCGAAAGTAATACTAATCCTAG 57.870 37.037 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.774690 TGATGGGTTCTTGCATTTTACTCTT 59.225 36.000 0.00 0.00 0.00 2.85
2 3 5.183904 GTGATGGGTTCTTGCATTTTACTCT 59.816 40.000 0.00 0.00 0.00 3.24
5 6 5.132897 TGTGATGGGTTCTTGCATTTTAC 57.867 39.130 0.00 0.00 0.00 2.01
6 7 5.999205 ATGTGATGGGTTCTTGCATTTTA 57.001 34.783 0.00 0.00 0.00 1.52
7 8 4.895668 ATGTGATGGGTTCTTGCATTTT 57.104 36.364 0.00 0.00 0.00 1.82
8 9 4.283978 TCAATGTGATGGGTTCTTGCATTT 59.716 37.500 0.00 0.00 0.00 2.32
9 10 3.833650 TCAATGTGATGGGTTCTTGCATT 59.166 39.130 0.00 0.00 0.00 3.56
10 11 3.433343 TCAATGTGATGGGTTCTTGCAT 58.567 40.909 0.00 0.00 0.00 3.96
11 12 2.821378 CTCAATGTGATGGGTTCTTGCA 59.179 45.455 0.00 0.00 0.00 4.08
12 13 2.165030 CCTCAATGTGATGGGTTCTTGC 59.835 50.000 0.00 0.00 0.00 4.01
13 14 2.756760 CCCTCAATGTGATGGGTTCTTG 59.243 50.000 0.00 0.00 33.17 3.02
14 15 2.649312 TCCCTCAATGTGATGGGTTCTT 59.351 45.455 10.61 0.00 36.68 2.52
15 16 2.025887 GTCCCTCAATGTGATGGGTTCT 60.026 50.000 10.61 0.00 36.68 3.01
16 17 2.369394 GTCCCTCAATGTGATGGGTTC 58.631 52.381 10.61 4.91 36.68 3.62
17 18 1.340017 CGTCCCTCAATGTGATGGGTT 60.340 52.381 10.61 0.00 36.68 4.11
18 19 0.253044 CGTCCCTCAATGTGATGGGT 59.747 55.000 10.61 0.00 36.68 4.51
19 20 0.253044 ACGTCCCTCAATGTGATGGG 59.747 55.000 0.00 0.00 36.67 4.00
20 21 1.339055 ACACGTCCCTCAATGTGATGG 60.339 52.381 3.42 0.00 38.23 3.51
21 22 2.002586 GACACGTCCCTCAATGTGATG 58.997 52.381 3.42 0.00 38.23 3.07
22 23 1.902508 AGACACGTCCCTCAATGTGAT 59.097 47.619 3.42 0.00 38.23 3.06
23 24 1.000843 CAGACACGTCCCTCAATGTGA 59.999 52.381 3.42 0.00 38.23 3.58
24 25 1.270305 ACAGACACGTCCCTCAATGTG 60.270 52.381 0.00 0.00 41.10 3.21
25 26 1.048601 ACAGACACGTCCCTCAATGT 58.951 50.000 0.00 0.00 0.00 2.71
26 27 2.492088 TCTACAGACACGTCCCTCAATG 59.508 50.000 0.00 0.00 0.00 2.82
27 28 2.803956 TCTACAGACACGTCCCTCAAT 58.196 47.619 0.00 0.00 0.00 2.57
28 29 2.281539 TCTACAGACACGTCCCTCAA 57.718 50.000 0.00 0.00 0.00 3.02
29 30 2.281539 TTCTACAGACACGTCCCTCA 57.718 50.000 0.00 0.00 0.00 3.86
30 31 3.243636 TGTTTTCTACAGACACGTCCCTC 60.244 47.826 0.00 0.00 31.68 4.30
31 32 2.696707 TGTTTTCTACAGACACGTCCCT 59.303 45.455 0.00 0.00 31.68 4.20
32 33 2.798847 GTGTTTTCTACAGACACGTCCC 59.201 50.000 0.00 0.00 37.45 4.46
37 38 2.480845 AGCCGTGTTTTCTACAGACAC 58.519 47.619 0.00 0.00 37.45 3.67
38 39 2.902705 AGCCGTGTTTTCTACAGACA 57.097 45.000 0.00 0.00 37.45 3.41
39 40 3.645884 TGTAGCCGTGTTTTCTACAGAC 58.354 45.455 0.00 0.00 38.11 3.51
40 41 4.325028 TTGTAGCCGTGTTTTCTACAGA 57.675 40.909 0.00 0.00 42.21 3.41
41 42 5.412526 TTTTGTAGCCGTGTTTTCTACAG 57.587 39.130 0.00 0.00 42.21 2.74
42 43 6.380095 AATTTTGTAGCCGTGTTTTCTACA 57.620 33.333 0.00 0.00 40.37 2.74
43 44 7.432838 TCAAAATTTTGTAGCCGTGTTTTCTAC 59.567 33.333 25.98 0.00 39.18 2.59
44 45 7.432838 GTCAAAATTTTGTAGCCGTGTTTTCTA 59.567 33.333 25.98 2.85 39.18 2.10
45 46 6.254804 GTCAAAATTTTGTAGCCGTGTTTTCT 59.745 34.615 25.98 0.00 39.18 2.52
46 47 6.254804 AGTCAAAATTTTGTAGCCGTGTTTTC 59.745 34.615 25.98 6.34 39.18 2.29
47 48 6.035542 CAGTCAAAATTTTGTAGCCGTGTTTT 59.964 34.615 25.98 3.05 39.18 2.43
48 49 5.518487 CAGTCAAAATTTTGTAGCCGTGTTT 59.482 36.000 25.98 3.61 39.18 2.83
49 50 5.040635 CAGTCAAAATTTTGTAGCCGTGTT 58.959 37.500 25.98 4.60 39.18 3.32
50 51 4.336993 TCAGTCAAAATTTTGTAGCCGTGT 59.663 37.500 25.98 5.03 39.18 4.49
51 52 4.854399 TCAGTCAAAATTTTGTAGCCGTG 58.146 39.130 25.98 16.15 39.18 4.94
52 53 5.705609 ATCAGTCAAAATTTTGTAGCCGT 57.294 34.783 25.98 10.10 39.18 5.68
53 54 8.514136 TTTTATCAGTCAAAATTTTGTAGCCG 57.486 30.769 25.98 13.77 39.18 5.52
63 64 8.883731 CGTAGACAGGATTTTATCAGTCAAAAT 58.116 33.333 11.47 0.00 38.09 1.82
64 65 7.333423 CCGTAGACAGGATTTTATCAGTCAAAA 59.667 37.037 11.47 0.00 37.93 2.44
65 66 6.816640 CCGTAGACAGGATTTTATCAGTCAAA 59.183 38.462 11.47 0.00 37.93 2.69
66 67 6.070995 ACCGTAGACAGGATTTTATCAGTCAA 60.071 38.462 11.47 0.00 37.93 3.18
67 68 5.421056 ACCGTAGACAGGATTTTATCAGTCA 59.579 40.000 11.47 0.49 37.93 3.41
68 69 5.903810 ACCGTAGACAGGATTTTATCAGTC 58.096 41.667 0.00 0.00 36.62 3.51
69 70 5.934402 ACCGTAGACAGGATTTTATCAGT 57.066 39.130 0.00 0.00 0.00 3.41
70 71 8.888579 AATTACCGTAGACAGGATTTTATCAG 57.111 34.615 0.00 0.00 0.00 2.90
71 72 9.675464 AAAATTACCGTAGACAGGATTTTATCA 57.325 29.630 0.00 0.00 29.16 2.15
95 96 5.334260 CCGATTAGTGGTTTACGCAGAAAAA 60.334 40.000 0.00 0.00 0.00 1.94
100 101 1.326548 GCCGATTAGTGGTTTACGCAG 59.673 52.381 0.00 0.00 0.00 5.18
114 115 6.149474 GCCTAACACATTATAATCTGCCGATT 59.851 38.462 8.49 8.49 42.34 3.34
117 118 4.754618 TGCCTAACACATTATAATCTGCCG 59.245 41.667 1.04 0.00 0.00 5.69
118 119 6.207417 ACATGCCTAACACATTATAATCTGCC 59.793 38.462 1.04 0.00 0.00 4.85
127 128 7.609918 ACTGTCATAAACATGCCTAACACATTA 59.390 33.333 0.00 0.00 37.23 1.90
142 143 2.084546 GCAGGACCCACTGTCATAAAC 58.915 52.381 0.00 0.00 46.38 2.01
143 144 1.985159 AGCAGGACCCACTGTCATAAA 59.015 47.619 0.00 0.00 46.38 1.40
169 170 1.761449 TTGTCGTTATGCCATGCCAT 58.239 45.000 0.00 0.00 0.00 4.40
171 172 3.366273 CCATATTGTCGTTATGCCATGCC 60.366 47.826 0.00 0.00 0.00 4.40
172 173 3.501828 TCCATATTGTCGTTATGCCATGC 59.498 43.478 0.00 0.00 0.00 4.06
209 210 7.539710 CACTTTGTTCCATATGTGATCAACTTG 59.460 37.037 0.00 10.60 0.00 3.16
233 236 2.639065 TGATATTGCGAAGGTTCCCAC 58.361 47.619 0.00 0.00 0.00 4.61
235 238 4.918810 ATTTGATATTGCGAAGGTTCCC 57.081 40.909 0.00 0.00 0.00 3.97
239 242 7.807977 AAGTGATATTTGATATTGCGAAGGT 57.192 32.000 0.00 0.00 0.00 3.50
257 261 7.659390 TGAAATTAATTTTTGCGGGAAAGTGAT 59.341 29.630 14.45 0.00 0.00 3.06
422 427 4.998051 TGGGCTTCCTTTCTTTAAGATGT 58.002 39.130 0.00 0.00 35.80 3.06
446 451 6.597832 AGATGTAGGGCATACTTCTCATAC 57.402 41.667 18.46 0.00 42.35 2.39
451 456 4.343526 CAGTGAGATGTAGGGCATACTTCT 59.656 45.833 22.58 22.58 46.31 2.85
452 457 4.100189 ACAGTGAGATGTAGGGCATACTTC 59.900 45.833 15.00 15.00 38.06 3.01
453 458 4.033709 ACAGTGAGATGTAGGGCATACTT 58.966 43.478 10.94 4.03 38.06 2.24
454 459 3.639094 GACAGTGAGATGTAGGGCATACT 59.361 47.826 10.94 0.00 38.06 2.12
455 460 3.384789 TGACAGTGAGATGTAGGGCATAC 59.615 47.826 1.66 1.66 38.06 2.39
460 465 2.433604 AGCATGACAGTGAGATGTAGGG 59.566 50.000 0.00 0.00 32.25 3.53
483 488 2.890311 TGTCCATTTTGCCGTCAAAGAT 59.110 40.909 0.00 0.00 42.50 2.40
484 489 2.302260 TGTCCATTTTGCCGTCAAAGA 58.698 42.857 0.00 0.00 42.50 2.52
485 490 2.791383 TGTCCATTTTGCCGTCAAAG 57.209 45.000 0.00 0.00 42.50 2.77
486 491 3.526931 TTTGTCCATTTTGCCGTCAAA 57.473 38.095 0.00 0.00 40.17 2.69
487 492 3.742433 ATTTGTCCATTTTGCCGTCAA 57.258 38.095 0.00 0.00 0.00 3.18
488 493 3.742433 AATTTGTCCATTTTGCCGTCA 57.258 38.095 0.00 0.00 0.00 4.35
489 494 4.054671 TCAAATTTGTCCATTTTGCCGTC 58.945 39.130 17.47 0.00 31.88 4.79
490 495 3.807071 GTCAAATTTGTCCATTTTGCCGT 59.193 39.130 17.47 0.00 31.88 5.68
491 496 3.186205 GGTCAAATTTGTCCATTTTGCCG 59.814 43.478 24.09 0.00 36.56 5.69
492 497 4.388485 AGGTCAAATTTGTCCATTTTGCC 58.612 39.130 28.50 13.67 38.59 4.52
493 498 5.055812 TGAGGTCAAATTTGTCCATTTTGC 58.944 37.500 28.50 14.66 38.59 3.68
494 499 5.697633 CCTGAGGTCAAATTTGTCCATTTTG 59.302 40.000 28.50 16.39 38.59 2.44
495 500 5.221702 CCCTGAGGTCAAATTTGTCCATTTT 60.222 40.000 28.50 13.50 38.59 1.82
496 501 4.284234 CCCTGAGGTCAAATTTGTCCATTT 59.716 41.667 28.50 13.80 38.59 2.32
497 502 3.834231 CCCTGAGGTCAAATTTGTCCATT 59.166 43.478 28.50 14.41 38.59 3.16
498 503 3.434309 CCCTGAGGTCAAATTTGTCCAT 58.566 45.455 28.50 17.29 38.59 3.41
499 504 2.875296 CCCTGAGGTCAAATTTGTCCA 58.125 47.619 28.50 13.52 38.59 4.02
500 505 1.546029 GCCCTGAGGTCAAATTTGTCC 59.454 52.381 22.29 22.29 36.76 4.02
501 506 1.200020 CGCCCTGAGGTCAAATTTGTC 59.800 52.381 17.47 12.07 34.57 3.18
502 507 1.202879 TCGCCCTGAGGTCAAATTTGT 60.203 47.619 17.47 0.00 34.57 2.83
503 508 1.533625 TCGCCCTGAGGTCAAATTTG 58.466 50.000 12.15 12.15 34.57 2.32
504 509 2.286365 TTCGCCCTGAGGTCAAATTT 57.714 45.000 0.00 0.00 34.57 1.82
505 510 1.886542 GTTTCGCCCTGAGGTCAAATT 59.113 47.619 0.00 0.00 34.57 1.82
506 511 1.073923 AGTTTCGCCCTGAGGTCAAAT 59.926 47.619 0.00 0.00 34.57 2.32
507 512 0.472471 AGTTTCGCCCTGAGGTCAAA 59.528 50.000 0.00 0.00 34.57 2.69
508 513 1.344065 TAGTTTCGCCCTGAGGTCAA 58.656 50.000 0.00 0.00 34.57 3.18
509 514 1.568504 ATAGTTTCGCCCTGAGGTCA 58.431 50.000 0.00 0.00 34.57 4.02
510 515 2.693267 AATAGTTTCGCCCTGAGGTC 57.307 50.000 0.00 0.00 34.57 3.85
511 516 2.304761 TGAAATAGTTTCGCCCTGAGGT 59.695 45.455 0.00 0.00 42.55 3.85
512 517 2.678336 GTGAAATAGTTTCGCCCTGAGG 59.322 50.000 0.00 0.00 42.73 3.86
513 518 3.334691 TGTGAAATAGTTTCGCCCTGAG 58.665 45.455 11.97 0.00 46.73 3.35
514 519 3.410631 TGTGAAATAGTTTCGCCCTGA 57.589 42.857 11.97 0.00 46.73 3.86
515 520 4.023193 AGTTTGTGAAATAGTTTCGCCCTG 60.023 41.667 11.97 0.00 46.73 4.45
516 521 4.142038 AGTTTGTGAAATAGTTTCGCCCT 58.858 39.130 11.97 4.59 46.73 5.19
517 522 4.499037 AGTTTGTGAAATAGTTTCGCCC 57.501 40.909 11.97 2.81 46.73 6.13
518 523 7.136772 AGTTTAGTTTGTGAAATAGTTTCGCC 58.863 34.615 11.97 0.84 46.73 5.54
545 550 9.730420 GTCAGCTGAGTGAAATACTTTTAAAAA 57.270 29.630 18.89 0.00 40.53 1.94
546 551 8.349983 GGTCAGCTGAGTGAAATACTTTTAAAA 58.650 33.333 18.89 0.00 40.53 1.52
547 552 7.040686 GGGTCAGCTGAGTGAAATACTTTTAAA 60.041 37.037 18.89 0.00 40.53 1.52
548 553 6.430000 GGGTCAGCTGAGTGAAATACTTTTAA 59.570 38.462 18.89 0.00 40.53 1.52
549 554 5.938125 GGGTCAGCTGAGTGAAATACTTTTA 59.062 40.000 18.89 0.00 40.53 1.52
550 555 4.762251 GGGTCAGCTGAGTGAAATACTTTT 59.238 41.667 18.89 0.00 40.53 2.27
551 556 4.327680 GGGTCAGCTGAGTGAAATACTTT 58.672 43.478 18.89 0.00 40.53 2.66
552 557 3.307762 GGGGTCAGCTGAGTGAAATACTT 60.308 47.826 18.89 0.00 40.53 2.24
553 558 2.237392 GGGGTCAGCTGAGTGAAATACT 59.763 50.000 18.89 0.00 44.02 2.12
554 559 2.237392 AGGGGTCAGCTGAGTGAAATAC 59.763 50.000 18.89 2.67 0.00 1.89
555 560 2.551270 AGGGGTCAGCTGAGTGAAATA 58.449 47.619 18.89 0.00 0.00 1.40
556 561 1.366319 AGGGGTCAGCTGAGTGAAAT 58.634 50.000 18.89 0.00 0.00 2.17
557 562 2.024176 TAGGGGTCAGCTGAGTGAAA 57.976 50.000 18.89 0.00 0.00 2.69
558 563 2.024176 TTAGGGGTCAGCTGAGTGAA 57.976 50.000 18.89 4.54 0.00 3.18
559 564 1.833630 CATTAGGGGTCAGCTGAGTGA 59.166 52.381 18.89 0.00 0.00 3.41
560 565 1.556911 ACATTAGGGGTCAGCTGAGTG 59.443 52.381 18.89 9.75 0.00 3.51
561 566 1.958288 ACATTAGGGGTCAGCTGAGT 58.042 50.000 18.89 5.86 0.00 3.41
562 567 4.322349 GCTATACATTAGGGGTCAGCTGAG 60.322 50.000 18.89 5.13 0.00 3.35
563 568 3.578716 GCTATACATTAGGGGTCAGCTGA 59.421 47.826 13.74 13.74 0.00 4.26
564 569 3.615110 CGCTATACATTAGGGGTCAGCTG 60.615 52.174 7.63 7.63 0.00 4.24
565 570 2.563179 CGCTATACATTAGGGGTCAGCT 59.437 50.000 0.00 0.00 0.00 4.24
566 571 2.299297 ACGCTATACATTAGGGGTCAGC 59.701 50.000 2.40 0.00 32.56 4.26
567 572 3.056749 GGACGCTATACATTAGGGGTCAG 60.057 52.174 0.00 0.00 41.35 3.51
568 573 2.895404 GGACGCTATACATTAGGGGTCA 59.105 50.000 0.00 0.00 41.35 4.02
569 574 2.094854 CGGACGCTATACATTAGGGGTC 60.095 54.545 0.00 0.00 39.71 4.46
570 575 1.891150 CGGACGCTATACATTAGGGGT 59.109 52.381 2.40 0.00 32.56 4.95
571 576 2.094854 GTCGGACGCTATACATTAGGGG 60.095 54.545 0.00 0.00 32.56 4.79
572 577 2.555325 TGTCGGACGCTATACATTAGGG 59.445 50.000 3.34 0.00 0.00 3.53
573 578 3.822996 CTGTCGGACGCTATACATTAGG 58.177 50.000 3.34 0.00 0.00 2.69
574 579 3.235195 GCTGTCGGACGCTATACATTAG 58.765 50.000 14.63 0.45 0.00 1.73
575 580 2.619646 TGCTGTCGGACGCTATACATTA 59.380 45.455 19.88 1.73 0.00 1.90
576 581 1.407618 TGCTGTCGGACGCTATACATT 59.592 47.619 19.88 0.00 0.00 2.71
577 582 1.029681 TGCTGTCGGACGCTATACAT 58.970 50.000 19.88 0.00 0.00 2.29
578 583 0.812549 TTGCTGTCGGACGCTATACA 59.187 50.000 19.88 4.25 0.00 2.29
579 584 1.478137 CTTGCTGTCGGACGCTATAC 58.522 55.000 19.88 2.12 0.00 1.47
580 585 0.384309 CCTTGCTGTCGGACGCTATA 59.616 55.000 19.88 9.19 0.00 1.31
581 586 1.141881 CCTTGCTGTCGGACGCTAT 59.858 57.895 19.88 0.00 0.00 2.97
582 587 2.571757 CCTTGCTGTCGGACGCTA 59.428 61.111 19.88 14.12 0.00 4.26
585 590 3.114616 CTGCCTTGCTGTCGGACG 61.115 66.667 3.34 0.00 0.00 4.79
586 591 3.426568 GCTGCCTTGCTGTCGGAC 61.427 66.667 0.00 0.00 0.00 4.79
590 595 4.099170 CTGCGCTGCCTTGCTGTC 62.099 66.667 9.73 0.00 0.00 3.51
591 596 4.943252 ACTGCGCTGCCTTGCTGT 62.943 61.111 14.80 5.08 38.27 4.40
592 597 4.400109 CACTGCGCTGCCTTGCTG 62.400 66.667 14.80 0.00 36.29 4.41
595 600 4.400109 CTGCACTGCGCTGCCTTG 62.400 66.667 17.78 8.81 43.06 3.61
604 609 1.061570 GTGATAAGCGCTGCACTGC 59.938 57.895 23.19 8.10 0.00 4.40
605 610 0.649475 GAGTGATAAGCGCTGCACTG 59.351 55.000 32.28 0.00 41.30 3.66
606 611 0.247460 TGAGTGATAAGCGCTGCACT 59.753 50.000 29.43 29.43 43.67 4.40
607 612 0.649475 CTGAGTGATAAGCGCTGCAC 59.351 55.000 23.08 23.08 37.50 4.57
608 613 0.460811 CCTGAGTGATAAGCGCTGCA 60.461 55.000 12.58 7.31 37.50 4.41
609 614 1.770085 GCCTGAGTGATAAGCGCTGC 61.770 60.000 12.58 4.16 37.50 5.25
610 615 1.485838 CGCCTGAGTGATAAGCGCTG 61.486 60.000 12.58 0.00 40.35 5.18
611 616 1.227089 CGCCTGAGTGATAAGCGCT 60.227 57.895 2.64 2.64 40.35 5.92
612 617 3.313750 CGCCTGAGTGATAAGCGC 58.686 61.111 0.00 0.00 40.35 5.92
614 619 1.202417 TGTAGCGCCTGAGTGATAAGC 60.202 52.381 2.29 0.00 0.00 3.09
615 620 2.871182 TGTAGCGCCTGAGTGATAAG 57.129 50.000 2.29 0.00 0.00 1.73
616 621 2.959030 AGATGTAGCGCCTGAGTGATAA 59.041 45.455 2.29 0.00 0.00 1.75
617 622 2.294512 CAGATGTAGCGCCTGAGTGATA 59.705 50.000 2.29 0.00 0.00 2.15
618 623 1.068281 CAGATGTAGCGCCTGAGTGAT 59.932 52.381 2.29 0.00 0.00 3.06
619 624 0.457443 CAGATGTAGCGCCTGAGTGA 59.543 55.000 2.29 0.00 0.00 3.41
620 625 0.174389 ACAGATGTAGCGCCTGAGTG 59.826 55.000 16.07 4.87 0.00 3.51
621 626 0.174389 CACAGATGTAGCGCCTGAGT 59.826 55.000 16.07 0.00 0.00 3.41
622 627 1.150567 GCACAGATGTAGCGCCTGAG 61.151 60.000 16.07 9.98 0.00 3.35
623 628 1.153568 GCACAGATGTAGCGCCTGA 60.154 57.895 16.07 0.00 0.00 3.86
624 629 1.426816 CTGCACAGATGTAGCGCCTG 61.427 60.000 2.29 6.40 31.35 4.85
625 630 1.153489 CTGCACAGATGTAGCGCCT 60.153 57.895 2.29 0.00 31.35 5.52
626 631 3.403277 CTGCACAGATGTAGCGCC 58.597 61.111 2.29 0.00 31.35 6.53
630 635 2.176273 GGGCGCTGCACAGATGTAG 61.176 63.158 7.64 0.00 41.23 2.74
631 636 2.125147 GGGCGCTGCACAGATGTA 60.125 61.111 7.64 0.00 0.00 2.29
653 658 1.576421 GTGTAGTGCAGCACCTTGC 59.424 57.895 22.41 8.86 45.46 4.01
658 663 3.244105 CACGGTGTAGTGCAGCAC 58.756 61.111 18.55 18.55 45.25 4.40
664 669 2.452813 GGCGATGCACGGTGTAGTG 61.453 63.158 10.24 3.24 44.47 2.74
665 670 2.125673 GGCGATGCACGGTGTAGT 60.126 61.111 10.24 0.00 42.83 2.73
666 671 2.167219 CAGGCGATGCACGGTGTAG 61.167 63.158 10.24 0.00 42.83 2.74
667 672 2.125713 CAGGCGATGCACGGTGTA 60.126 61.111 10.24 5.57 42.83 2.90
668 673 4.314440 ACAGGCGATGCACGGTGT 62.314 61.111 10.24 0.00 42.83 4.16
669 674 3.490759 GACAGGCGATGCACGGTG 61.491 66.667 3.15 3.15 42.83 4.94
670 675 3.649277 GAGACAGGCGATGCACGGT 62.649 63.158 10.02 0.00 42.83 4.83
671 676 2.004808 TAGAGACAGGCGATGCACGG 62.005 60.000 10.02 0.00 42.83 4.94
672 677 0.179137 TTAGAGACAGGCGATGCACG 60.179 55.000 0.00 0.00 45.66 5.34
673 678 1.565305 CTTAGAGACAGGCGATGCAC 58.435 55.000 0.00 0.00 0.00 4.57
674 679 0.461548 CCTTAGAGACAGGCGATGCA 59.538 55.000 0.00 0.00 0.00 3.96
675 680 0.747255 TCCTTAGAGACAGGCGATGC 59.253 55.000 0.00 0.00 0.00 3.91
676 681 1.269517 GCTCCTTAGAGACAGGCGATG 60.270 57.143 0.00 0.00 43.39 3.84
677 682 1.036707 GCTCCTTAGAGACAGGCGAT 58.963 55.000 0.00 0.00 43.39 4.58
678 683 2.494677 GCTCCTTAGAGACAGGCGA 58.505 57.895 0.00 0.00 43.39 5.54
684 689 1.957877 ACTATGCGGCTCCTTAGAGAC 59.042 52.381 0.00 0.00 45.68 3.36
685 690 2.366640 ACTATGCGGCTCCTTAGAGA 57.633 50.000 0.00 0.00 43.39 3.10
686 691 3.413327 TCTACTATGCGGCTCCTTAGAG 58.587 50.000 0.00 0.00 43.57 2.43
687 692 3.181442 ACTCTACTATGCGGCTCCTTAGA 60.181 47.826 0.00 2.11 0.00 2.10
688 693 3.057876 CACTCTACTATGCGGCTCCTTAG 60.058 52.174 0.00 0.35 0.00 2.18
689 694 2.885266 CACTCTACTATGCGGCTCCTTA 59.115 50.000 0.00 0.00 0.00 2.69
690 695 1.683917 CACTCTACTATGCGGCTCCTT 59.316 52.381 0.00 0.00 0.00 3.36
691 696 1.323412 CACTCTACTATGCGGCTCCT 58.677 55.000 0.00 0.00 0.00 3.69
692 697 0.319125 GCACTCTACTATGCGGCTCC 60.319 60.000 0.00 0.00 30.97 4.70
693 698 0.385751 TGCACTCTACTATGCGGCTC 59.614 55.000 0.00 0.00 45.13 4.70
694 699 0.387202 CTGCACTCTACTATGCGGCT 59.613 55.000 0.00 0.00 45.13 5.52
695 700 2.892305 CTGCACTCTACTATGCGGC 58.108 57.895 0.00 0.00 45.13 6.53
697 702 2.098280 AGACACTGCACTCTACTATGCG 59.902 50.000 0.00 0.00 45.13 4.73
698 703 3.791973 AGACACTGCACTCTACTATGC 57.208 47.619 0.00 0.00 42.40 3.14
699 704 3.862267 GCAAGACACTGCACTCTACTATG 59.138 47.826 0.00 0.00 42.17 2.23
700 705 3.118956 GGCAAGACACTGCACTCTACTAT 60.119 47.826 0.00 0.00 44.52 2.12
701 706 2.231478 GGCAAGACACTGCACTCTACTA 59.769 50.000 0.00 0.00 44.52 1.82
702 707 1.001406 GGCAAGACACTGCACTCTACT 59.999 52.381 0.00 0.00 44.52 2.57
703 708 1.433534 GGCAAGACACTGCACTCTAC 58.566 55.000 0.00 0.00 44.52 2.59
704 709 0.038251 CGGCAAGACACTGCACTCTA 60.038 55.000 0.00 0.00 44.52 2.43
705 710 1.301244 CGGCAAGACACTGCACTCT 60.301 57.895 0.00 0.00 44.52 3.24
706 711 1.560860 GACGGCAAGACACTGCACTC 61.561 60.000 0.00 0.00 44.52 3.51
707 712 1.595382 GACGGCAAGACACTGCACT 60.595 57.895 0.00 0.00 44.52 4.40
708 713 2.939022 GACGGCAAGACACTGCAC 59.061 61.111 0.00 0.00 44.52 4.57
709 714 2.661537 CGACGGCAAGACACTGCA 60.662 61.111 0.00 0.00 44.52 4.41
710 715 3.414700 CCGACGGCAAGACACTGC 61.415 66.667 0.00 0.00 41.85 4.40
711 716 2.022129 GTCCGACGGCAAGACACTG 61.022 63.158 9.66 0.00 0.00 3.66
712 717 2.338984 GTCCGACGGCAAGACACT 59.661 61.111 9.66 0.00 0.00 3.55
713 718 2.814183 ATCGTCCGACGGCAAGACAC 62.814 60.000 20.35 0.00 42.81 3.67
714 719 2.632544 ATCGTCCGACGGCAAGACA 61.633 57.895 20.35 0.00 42.81 3.41
715 720 2.158959 CATCGTCCGACGGCAAGAC 61.159 63.158 20.35 0.57 42.81 3.01
716 721 1.307355 TACATCGTCCGACGGCAAGA 61.307 55.000 20.35 8.59 42.81 3.02
717 722 1.138036 TACATCGTCCGACGGCAAG 59.862 57.895 20.35 10.37 42.81 4.01
718 723 1.153978 GTACATCGTCCGACGGCAA 60.154 57.895 20.35 2.08 42.81 4.52
719 724 1.864725 TTGTACATCGTCCGACGGCA 61.865 55.000 20.35 2.85 42.81 5.69
720 725 0.733566 TTTGTACATCGTCCGACGGC 60.734 55.000 20.35 3.45 42.81 5.68
721 726 1.652124 CTTTTGTACATCGTCCGACGG 59.348 52.381 20.35 7.84 42.81 4.79
722 727 1.652124 CCTTTTGTACATCGTCCGACG 59.348 52.381 14.94 14.94 44.19 5.12
723 728 1.997606 CCCTTTTGTACATCGTCCGAC 59.002 52.381 0.00 0.00 0.00 4.79
724 729 1.619827 ACCCTTTTGTACATCGTCCGA 59.380 47.619 0.00 0.00 0.00 4.55
725 730 1.997606 GACCCTTTTGTACATCGTCCG 59.002 52.381 0.00 0.00 0.00 4.79
726 731 3.000727 CTGACCCTTTTGTACATCGTCC 58.999 50.000 0.00 0.00 0.00 4.79
727 732 3.432252 CACTGACCCTTTTGTACATCGTC 59.568 47.826 0.00 0.00 0.00 4.20
728 733 3.399330 CACTGACCCTTTTGTACATCGT 58.601 45.455 0.00 0.00 0.00 3.73
729 734 2.742053 CCACTGACCCTTTTGTACATCG 59.258 50.000 0.00 0.00 0.00 3.84
730 735 3.502211 CACCACTGACCCTTTTGTACATC 59.498 47.826 0.00 0.00 0.00 3.06
731 736 3.117663 ACACCACTGACCCTTTTGTACAT 60.118 43.478 0.00 0.00 0.00 2.29
732 737 2.240160 ACACCACTGACCCTTTTGTACA 59.760 45.455 0.00 0.00 0.00 2.90
733 738 2.616842 CACACCACTGACCCTTTTGTAC 59.383 50.000 0.00 0.00 0.00 2.90
734 739 2.506231 TCACACCACTGACCCTTTTGTA 59.494 45.455 0.00 0.00 0.00 2.41
735 740 1.283613 TCACACCACTGACCCTTTTGT 59.716 47.619 0.00 0.00 0.00 2.83
736 741 2.051334 TCACACCACTGACCCTTTTG 57.949 50.000 0.00 0.00 0.00 2.44
737 742 2.818751 TTCACACCACTGACCCTTTT 57.181 45.000 0.00 0.00 0.00 2.27
738 743 2.818751 TTTCACACCACTGACCCTTT 57.181 45.000 0.00 0.00 0.00 3.11
739 744 3.394606 AGTATTTCACACCACTGACCCTT 59.605 43.478 0.00 0.00 0.00 3.95
740 745 2.979678 AGTATTTCACACCACTGACCCT 59.020 45.455 0.00 0.00 0.00 4.34
741 746 3.418684 AGTATTTCACACCACTGACCC 57.581 47.619 0.00 0.00 0.00 4.46
926 932 2.275318 GCTTGCTCAAGTCTAGCGAAT 58.725 47.619 10.86 0.00 43.11 3.34
1422 1471 4.029809 GTGTAGTTGGGCCCGCCT 62.030 66.667 19.37 17.72 36.10 5.52
2036 2091 5.521735 CGAGCAGAAACTAACAGCTAATCAT 59.478 40.000 0.00 0.00 35.36 2.45
2050 2171 0.161024 GTACACACGCGAGCAGAAAC 59.839 55.000 15.93 2.38 0.00 2.78
2141 2294 6.601741 TTTCATTGAAATGTTGAACCTTGC 57.398 33.333 7.74 0.00 37.65 4.01
2187 2360 3.970640 TGGCCCAAAATTTTGAGGTTACT 59.029 39.130 28.44 0.00 40.55 2.24
2252 2425 7.520776 CGCTAGTTTGATACTGTAGATGCTAGT 60.521 40.741 12.94 0.00 37.73 2.57
2254 2427 6.262496 ACGCTAGTTTGATACTGTAGATGCTA 59.738 38.462 0.00 0.00 37.73 3.49
2255 2428 5.067936 ACGCTAGTTTGATACTGTAGATGCT 59.932 40.000 0.00 0.00 37.73 3.79
2256 2429 5.282510 ACGCTAGTTTGATACTGTAGATGC 58.717 41.667 0.00 0.00 37.73 3.91
2258 2431 6.095021 TGTGACGCTAGTTTGATACTGTAGAT 59.905 38.462 0.00 0.00 37.73 1.98
2259 2432 5.413523 TGTGACGCTAGTTTGATACTGTAGA 59.586 40.000 0.00 0.00 37.73 2.59
2260 2433 5.512082 GTGTGACGCTAGTTTGATACTGTAG 59.488 44.000 0.00 0.00 37.73 2.74
2261 2434 5.396484 GTGTGACGCTAGTTTGATACTGTA 58.604 41.667 0.00 0.00 37.73 2.74
2262 2435 4.235360 GTGTGACGCTAGTTTGATACTGT 58.765 43.478 0.00 0.00 37.73 3.55
2278 2527 4.923281 GGACTTTATGCATTTTGGTGTGAC 59.077 41.667 3.54 0.00 0.00 3.67
2283 2532 5.163622 CGATCAGGACTTTATGCATTTTGGT 60.164 40.000 3.54 0.00 0.00 3.67
2284 2533 5.276270 CGATCAGGACTTTATGCATTTTGG 58.724 41.667 3.54 0.00 0.00 3.28
2285 2534 4.736793 GCGATCAGGACTTTATGCATTTTG 59.263 41.667 3.54 0.00 0.00 2.44
2324 2573 5.184864 TGGGGTGTTAAGACTTTATGCATTG 59.815 40.000 3.54 0.00 0.00 2.82
2366 2615 5.398603 TTTCTTTCTTTTTGCTGGTGACA 57.601 34.783 0.00 0.00 39.59 3.58
2373 2622 6.163476 ACGGTTTCTTTTCTTTCTTTTTGCT 58.837 32.000 0.00 0.00 0.00 3.91
2415 2664 3.882888 GCCTTATGAATCGGGACAAATGA 59.117 43.478 0.00 0.00 0.00 2.57
2427 2676 3.244353 CGAGACAGATGGGCCTTATGAAT 60.244 47.826 19.57 8.01 0.00 2.57
2453 2702 0.989602 CCTTTTAGTCCCGGTTCCCT 59.010 55.000 0.00 0.00 0.00 4.20
2645 2895 0.958822 CCCAAAACCACCTCCTTTCG 59.041 55.000 0.00 0.00 0.00 3.46
2708 2961 5.221067 GCACGGAGATAAGAGAAGACACATA 60.221 44.000 0.00 0.00 0.00 2.29
2814 3067 6.259550 AGTACAATCCAAACTTGATCAAGC 57.740 37.500 30.95 12.92 41.99 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.