Multiple sequence alignment - TraesCS2D01G583000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G583000 chr2D 100.000 3026 0 0 1 3026 643434148 643437173 0.000000e+00 5589.0
1 TraesCS2D01G583000 chr2D 84.885 1085 132 19 961 2028 643330278 643331347 0.000000e+00 1066.0
2 TraesCS2D01G583000 chr2D 77.070 942 189 22 1097 2028 643468535 643467611 4.470000e-143 518.0
3 TraesCS2D01G583000 chr2D 88.793 116 12 1 1 115 413879649 413879764 1.130000e-29 141.0
4 TraesCS2D01G583000 chr2B 91.182 1497 67 29 603 2040 793506662 793505172 0.000000e+00 1973.0
5 TraesCS2D01G583000 chr2B 84.887 1019 130 17 1022 2028 793518189 793517183 0.000000e+00 1007.0
6 TraesCS2D01G583000 chr2B 88.624 545 25 15 2010 2527 793505151 793504617 1.980000e-176 628.0
7 TraesCS2D01G583000 chr2B 82.400 625 48 24 5 584 793507254 793506647 3.510000e-134 488.0
8 TraesCS2D01G583000 chr2B 86.726 113 7 2 2253 2364 793508729 793508834 5.300000e-23 119.0
9 TraesCS2D01G583000 chr2B 96.970 66 2 0 2709 2774 793501664 793501599 8.870000e-21 111.0
10 TraesCS2D01G583000 chr2B 93.846 65 3 1 2538 2602 793501734 793501671 2.480000e-16 97.1
11 TraesCS2D01G583000 chr2A 88.328 1585 93 39 706 2216 768267357 768265791 0.000000e+00 1818.0
12 TraesCS2D01G583000 chr2A 83.938 1158 148 22 901 2037 768256844 768257984 0.000000e+00 1074.0
13 TraesCS2D01G583000 chr2A 77.979 940 188 16 1097 2030 768306705 768305779 3.380000e-159 571.0
14 TraesCS2D01G583000 chr2A 85.507 207 19 6 303 501 768270775 768270572 3.950000e-49 206.0
15 TraesCS2D01G583000 chr2A 87.500 80 4 2 2360 2433 768265541 768265462 1.490000e-13 87.9
16 TraesCS2D01G583000 chr3D 87.643 1222 101 22 831 2027 532205973 532204777 0.000000e+00 1375.0
17 TraesCS2D01G583000 chr3A 88.164 1149 102 19 901 2027 667495355 667494219 0.000000e+00 1338.0
18 TraesCS2D01G583000 chr3B 85.043 1277 144 30 909 2159 704479317 704478062 0.000000e+00 1256.0
19 TraesCS2D01G583000 chr3B 85.844 770 60 20 1512 2254 704406969 704406222 0.000000e+00 773.0
20 TraesCS2D01G583000 chr3B 84.914 464 39 16 831 1271 704409008 704408553 9.960000e-120 440.0
21 TraesCS2D01G583000 chr3B 88.696 115 13 0 1 115 674990091 674989977 1.130000e-29 141.0
22 TraesCS2D01G583000 chr7D 89.655 116 11 1 1 115 530684225 530684340 2.430000e-31 147.0
23 TraesCS2D01G583000 chr6D 88.793 116 12 1 1 115 438321776 438321891 1.130000e-29 141.0
24 TraesCS2D01G583000 chr5D 88.793 116 12 1 1 115 59947724 59947839 1.130000e-29 141.0
25 TraesCS2D01G583000 chr4D 88.793 116 12 1 1 115 326382567 326382452 1.130000e-29 141.0
26 TraesCS2D01G583000 chr4B 88.793 116 12 1 1 115 406391170 406391055 1.130000e-29 141.0
27 TraesCS2D01G583000 chr4B 88.793 116 12 1 1 115 406391380 406391265 1.130000e-29 141.0
28 TraesCS2D01G583000 chr1B 88.696 115 13 0 1 115 446426477 446426363 1.130000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G583000 chr2D 643434148 643437173 3025 False 5589.000000 5589 100.000000 1 3026 1 chr2D.!!$F3 3025
1 TraesCS2D01G583000 chr2D 643330278 643331347 1069 False 1066.000000 1066 84.885000 961 2028 1 chr2D.!!$F2 1067
2 TraesCS2D01G583000 chr2D 643467611 643468535 924 True 518.000000 518 77.070000 1097 2028 1 chr2D.!!$R1 931
3 TraesCS2D01G583000 chr2B 793517183 793518189 1006 True 1007.000000 1007 84.887000 1022 2028 1 chr2B.!!$R1 1006
4 TraesCS2D01G583000 chr2B 793501599 793507254 5655 True 659.420000 1973 90.604400 5 2774 5 chr2B.!!$R2 2769
5 TraesCS2D01G583000 chr2A 768256844 768257984 1140 False 1074.000000 1074 83.938000 901 2037 1 chr2A.!!$F1 1136
6 TraesCS2D01G583000 chr2A 768265462 768270775 5313 True 703.966667 1818 87.111667 303 2433 3 chr2A.!!$R2 2130
7 TraesCS2D01G583000 chr2A 768305779 768306705 926 True 571.000000 571 77.979000 1097 2030 1 chr2A.!!$R1 933
8 TraesCS2D01G583000 chr3D 532204777 532205973 1196 True 1375.000000 1375 87.643000 831 2027 1 chr3D.!!$R1 1196
9 TraesCS2D01G583000 chr3A 667494219 667495355 1136 True 1338.000000 1338 88.164000 901 2027 1 chr3A.!!$R1 1126
10 TraesCS2D01G583000 chr3B 704478062 704479317 1255 True 1256.000000 1256 85.043000 909 2159 1 chr3B.!!$R2 1250
11 TraesCS2D01G583000 chr3B 704406222 704409008 2786 True 606.500000 773 85.379000 831 2254 2 chr3B.!!$R3 1423

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 245 0.030369 CCTCACGCCCATACTCGTAC 59.970 60.0 0.0 0.0 37.14 3.67 F
364 376 0.607489 CGGATTGATGGGGAGATGCC 60.607 60.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 6434 0.394488 TGAACACGCCCTGGTTGAAA 60.394 50.0 0.0 0.0 0.0 2.69 R
2185 6941 1.243902 TGCAAAGACGATCCAAACCC 58.756 50.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.986085 ATGAACTACTTACAGAGCAAAACAT 57.014 32.000 0.00 0.00 0.00 2.71
29 30 6.545504 ACTACTTACAGAGCAAAACATGTG 57.454 37.500 0.00 0.00 0.00 3.21
72 73 7.430992 TGTCTATGTACATCCGTATGTAGTC 57.569 40.000 12.68 0.32 46.68 2.59
76 77 8.323567 TCTATGTACATCCGTATGTAGTCCATA 58.676 37.037 12.68 5.65 46.68 2.74
79 80 7.599171 TGTACATCCGTATGTAGTCCATATTG 58.401 38.462 0.46 0.00 46.68 1.90
80 81 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
81 82 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
82 83 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
84 85 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
85 86 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
87 88 7.545965 CCGTATGTAGTCCATATTGAAATCTCC 59.454 40.741 0.00 0.00 38.29 3.71
88 89 8.088365 CGTATGTAGTCCATATTGAAATCTCCA 58.912 37.037 0.00 0.00 38.29 3.86
89 90 9.209175 GTATGTAGTCCATATTGAAATCTCCAC 57.791 37.037 0.00 0.00 38.29 4.02
92 93 8.106462 TGTAGTCCATATTGAAATCTCCACAAA 58.894 33.333 0.00 0.00 0.00 2.83
109 110 9.158233 TCTCCACAAAACCTATATTTAAGAACG 57.842 33.333 0.00 0.00 0.00 3.95
111 112 9.504708 TCCACAAAACCTATATTTAAGAACGAA 57.495 29.630 0.00 0.00 0.00 3.85
112 113 9.769093 CCACAAAACCTATATTTAAGAACGAAG 57.231 33.333 0.00 0.00 0.00 3.79
115 116 8.953313 CAAAACCTATATTTAAGAACGAAGGGT 58.047 33.333 0.00 0.00 0.00 4.34
159 169 8.839310 ATAAGAGCATAGTGATGTATCCAAAC 57.161 34.615 0.00 0.00 35.30 2.93
160 170 5.292765 AGAGCATAGTGATGTATCCAAACG 58.707 41.667 0.00 0.00 35.30 3.60
172 182 8.988934 TGATGTATCCAAACGCTCTTATATTTC 58.011 33.333 0.00 0.00 0.00 2.17
174 184 8.365399 TGTATCCAAACGCTCTTATATTTCTG 57.635 34.615 0.00 0.00 0.00 3.02
177 187 7.766219 TCCAAACGCTCTTATATTTCTGTAC 57.234 36.000 0.00 0.00 0.00 2.90
179 189 7.820386 TCCAAACGCTCTTATATTTCTGTACAA 59.180 33.333 0.00 0.00 0.00 2.41
219 229 2.409870 CCATCACTTTGGCCGCCTC 61.410 63.158 11.61 0.00 0.00 4.70
234 244 1.731433 GCCTCACGCCCATACTCGTA 61.731 60.000 0.00 0.00 37.14 3.43
235 245 0.030369 CCTCACGCCCATACTCGTAC 59.970 60.000 0.00 0.00 37.14 3.67
241 251 1.335964 CGCCCATACTCGTACCATGAG 60.336 57.143 0.00 0.00 37.27 2.90
243 253 1.686587 CCCATACTCGTACCATGAGCA 59.313 52.381 0.00 0.00 34.63 4.26
244 254 2.545952 CCCATACTCGTACCATGAGCAC 60.546 54.545 0.00 0.00 34.63 4.40
289 301 5.506815 GCCTGACACATACGCAATACTAGTA 60.507 44.000 4.77 4.77 0.00 1.82
290 302 6.143496 CCTGACACATACGCAATACTAGTAG 58.857 44.000 8.85 0.00 0.00 2.57
291 303 6.238676 CCTGACACATACGCAATACTAGTAGT 60.239 42.308 8.85 8.14 0.00 2.73
307 319 5.982516 ACTAGTAGTACTATTCGACCTGTCG 59.017 44.000 13.25 13.25 40.98 4.35
343 355 6.398830 CGTGTCCAAATTCATTGACGAAATTG 60.399 38.462 0.00 0.00 41.85 2.32
364 376 0.607489 CGGATTGATGGGGAGATGCC 60.607 60.000 0.00 0.00 0.00 4.40
394 410 8.698973 TTAAAGGATTGATGTGTCCAAGTTTA 57.301 30.769 0.00 0.00 36.96 2.01
406 422 7.662897 TGTGTCCAAGTTTACAAAGACTTTTT 58.337 30.769 0.00 0.00 34.04 1.94
407 423 7.810759 TGTGTCCAAGTTTACAAAGACTTTTTC 59.189 33.333 0.00 0.00 34.04 2.29
409 425 8.241367 TGTCCAAGTTTACAAAGACTTTTTCTC 58.759 33.333 0.00 0.00 34.04 2.87
410 426 8.241367 GTCCAAGTTTACAAAGACTTTTTCTCA 58.759 33.333 0.00 0.00 34.04 3.27
426 462 2.125106 CACGGGAAGCAGTAGCCC 60.125 66.667 0.00 0.00 43.56 5.19
536 3671 5.381174 TGAAATCACTTGATCAGGCTTTG 57.619 39.130 4.46 0.00 32.75 2.77
541 3676 5.186996 TCACTTGATCAGGCTTTGTTTTC 57.813 39.130 4.46 0.00 0.00 2.29
542 3677 4.889409 TCACTTGATCAGGCTTTGTTTTCT 59.111 37.500 4.46 0.00 0.00 2.52
543 3678 5.360714 TCACTTGATCAGGCTTTGTTTTCTT 59.639 36.000 4.46 0.00 0.00 2.52
544 3679 5.461078 CACTTGATCAGGCTTTGTTTTCTTG 59.539 40.000 4.46 0.00 0.00 3.02
548 3683 6.042143 TGATCAGGCTTTGTTTTCTTGAAAC 58.958 36.000 0.00 0.00 46.28 2.78
562 3697 6.773976 TTCTTGAAACAAATCACTTGGTCT 57.226 33.333 0.00 0.00 39.56 3.85
643 3778 9.689976 TTTGACACCATGACAAATTGTTATTAG 57.310 29.630 0.00 0.00 37.17 1.73
765 3913 3.073735 AGGCTGCTCGCTGCTAGT 61.074 61.111 18.02 3.61 43.37 2.57
767 3915 2.182791 GCTGCTCGCTGCTAGTCA 59.817 61.111 12.65 1.42 43.37 3.41
782 3931 5.003804 TGCTAGTCACCTTCATCCTTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
783 3932 4.396478 GCTAGTCACCTTCATCCTTTTTCC 59.604 45.833 0.00 0.00 0.00 3.13
798 3947 6.296803 TCCTTTTTCCCTCTCTGTAGAAAAC 58.703 40.000 0.00 0.00 37.80 2.43
799 3948 6.062095 CCTTTTTCCCTCTCTGTAGAAAACA 58.938 40.000 0.00 0.00 37.80 2.83
820 3969 8.633075 AAACATTTCCATTTCTATATTGCACG 57.367 30.769 0.00 0.00 0.00 5.34
822 3971 7.995289 ACATTTCCATTTCTATATTGCACGAA 58.005 30.769 0.00 0.00 0.00 3.85
823 3972 8.131100 ACATTTCCATTTCTATATTGCACGAAG 58.869 33.333 0.00 0.00 0.00 3.79
825 3974 6.844696 TCCATTTCTATATTGCACGAAGAC 57.155 37.500 0.00 0.00 0.00 3.01
826 3975 6.345298 TCCATTTCTATATTGCACGAAGACA 58.655 36.000 0.00 0.00 0.00 3.41
848 4024 1.961277 GGAGTGGTTGGTGCGTGAG 60.961 63.158 0.00 0.00 0.00 3.51
849 4025 1.227556 GAGTGGTTGGTGCGTGAGT 60.228 57.895 0.00 0.00 0.00 3.41
885 4063 1.008875 CGCTGTTTCTACGCTCTGCA 61.009 55.000 0.00 0.00 0.00 4.41
927 4122 1.961793 TATAAATGACGCCCACTGCC 58.038 50.000 0.00 0.00 36.24 4.85
996 4213 2.282180 GCTTCACTTCGGCCCCAA 60.282 61.111 0.00 0.00 0.00 4.12
1034 4257 1.602237 CAATACTGGCCGTCCTGGT 59.398 57.895 0.00 0.00 41.21 4.00
1260 4492 1.001974 TCCATCCTCCTCAACAACACG 59.998 52.381 0.00 0.00 0.00 4.49
1764 6434 1.595357 GTACTACAAGGCGCTGGGT 59.405 57.895 7.64 5.43 0.00 4.51
1797 6467 1.745489 GTTCACCTCCGACATGGCC 60.745 63.158 0.00 0.00 37.80 5.36
1803 6473 3.723235 CTCCGACATGGCCCTCGTG 62.723 68.421 0.00 0.00 37.80 4.35
1966 6636 3.190738 TTCAGGACCAACGCCCAGG 62.191 63.158 0.00 0.00 0.00 4.45
2040 6789 1.667724 GCTTGATCTGATGGTTCGGTG 59.332 52.381 0.00 0.00 0.00 4.94
2060 6809 3.200593 CGGCAAGCAGGCTAGCTG 61.201 66.667 15.72 11.82 45.89 4.24
2061 6810 3.516212 GGCAAGCAGGCTAGCTGC 61.516 66.667 23.41 23.41 45.89 5.25
2133 6882 4.450082 GCCAATCGTATTTGGGTTTCTT 57.550 40.909 13.65 0.00 45.25 2.52
2142 6891 0.680618 TTGGGTTTCTTGGCATGCTG 59.319 50.000 18.92 8.52 0.00 4.41
2185 6941 4.832248 TGGTGTAGCAATAAAGAGACAGG 58.168 43.478 0.00 0.00 0.00 4.00
2199 6963 0.613777 GACAGGGGTTTGGATCGTCT 59.386 55.000 0.00 0.00 0.00 4.18
2210 6974 3.548745 TGGATCGTCTTTGCATCTGAT 57.451 42.857 0.00 0.00 0.00 2.90
2211 6975 3.461061 TGGATCGTCTTTGCATCTGATC 58.539 45.455 0.00 0.00 33.26 2.92
2212 6976 3.133542 TGGATCGTCTTTGCATCTGATCT 59.866 43.478 11.95 0.00 34.22 2.75
2355 7201 6.703165 TCGACCATGACAGAAATTGATAGATG 59.297 38.462 0.00 0.00 0.00 2.90
2452 7364 4.144418 CGGGGAAAACACCGTGAA 57.856 55.556 5.28 0.00 44.85 3.18
2463 7375 3.896648 ACACCGTGAACAATCAATCAC 57.103 42.857 5.28 0.00 41.95 3.06
2502 7416 1.376037 GTGCAAGGAGGAGAACCGG 60.376 63.158 0.00 0.00 41.83 5.28
2524 7438 2.584418 CAGCCCAGCTCGATCGTG 60.584 66.667 15.94 14.19 36.40 4.35
2527 7441 2.202797 CCCAGCTCGATCGTGTGG 60.203 66.667 15.94 19.58 0.00 4.17
2528 7442 2.573869 CCAGCTCGATCGTGTGGT 59.426 61.111 15.94 9.42 0.00 4.16
2529 7443 1.807165 CCAGCTCGATCGTGTGGTG 60.807 63.158 15.94 19.29 0.00 4.17
2530 7444 1.080501 CAGCTCGATCGTGTGGTGT 60.081 57.895 15.94 0.00 0.00 4.16
2531 7445 1.080501 AGCTCGATCGTGTGGTGTG 60.081 57.895 15.94 0.00 0.00 3.82
2535 7449 0.960286 TCGATCGTGTGGTGTGGTTA 59.040 50.000 15.94 0.00 0.00 2.85
2536 7450 1.065358 CGATCGTGTGGTGTGGTTAC 58.935 55.000 7.03 0.00 0.00 2.50
2537 7451 1.336517 CGATCGTGTGGTGTGGTTACT 60.337 52.381 7.03 0.00 0.00 2.24
2538 7452 2.066262 GATCGTGTGGTGTGGTTACTG 58.934 52.381 0.00 0.00 0.00 2.74
2539 7453 0.105224 TCGTGTGGTGTGGTTACTGG 59.895 55.000 0.00 0.00 0.00 4.00
2540 7454 0.105224 CGTGTGGTGTGGTTACTGGA 59.895 55.000 0.00 0.00 0.00 3.86
2541 7455 1.473610 CGTGTGGTGTGGTTACTGGAA 60.474 52.381 0.00 0.00 0.00 3.53
2542 7456 2.808933 CGTGTGGTGTGGTTACTGGAAT 60.809 50.000 0.00 0.00 0.00 3.01
2543 7457 2.552315 GTGTGGTGTGGTTACTGGAATG 59.448 50.000 0.00 0.00 0.00 2.67
2544 7458 1.539827 GTGGTGTGGTTACTGGAATGC 59.460 52.381 0.00 0.00 0.00 3.56
2545 7459 1.143889 TGGTGTGGTTACTGGAATGCA 59.856 47.619 0.00 0.00 0.00 3.96
2546 7460 1.812571 GGTGTGGTTACTGGAATGCAG 59.187 52.381 0.00 0.00 0.00 4.41
2566 10351 4.083324 GCAGATCAAAGATGTTTCCGTTGA 60.083 41.667 0.00 0.00 33.39 3.18
2573 10358 4.813296 AGATGTTTCCGTTGAACTTGTC 57.187 40.909 0.00 0.00 0.00 3.18
2602 10387 1.141858 GAGGCTGGATTTCTAGGGTGG 59.858 57.143 0.00 0.00 0.00 4.61
2603 10388 0.919710 GGCTGGATTTCTAGGGTGGT 59.080 55.000 0.00 0.00 0.00 4.16
2605 10390 1.408822 GCTGGATTTCTAGGGTGGTGG 60.409 57.143 0.00 0.00 0.00 4.61
2606 10391 1.212935 CTGGATTTCTAGGGTGGTGGG 59.787 57.143 0.00 0.00 0.00 4.61
2607 10392 1.296002 GGATTTCTAGGGTGGTGGGT 58.704 55.000 0.00 0.00 0.00 4.51
2608 10393 1.212195 GGATTTCTAGGGTGGTGGGTC 59.788 57.143 0.00 0.00 0.00 4.46
2609 10394 1.212195 GATTTCTAGGGTGGTGGGTCC 59.788 57.143 0.00 0.00 0.00 4.46
2610 10395 0.104356 TTTCTAGGGTGGTGGGTCCA 60.104 55.000 0.00 0.00 45.01 4.02
2620 10405 2.054799 TGGTGGGTCCATAAGATAGCC 58.945 52.381 0.00 0.00 41.93 3.93
2621 10406 2.339769 GGTGGGTCCATAAGATAGCCT 58.660 52.381 0.00 0.00 35.97 4.58
2622 10407 2.039084 GGTGGGTCCATAAGATAGCCTG 59.961 54.545 0.00 0.00 35.97 4.85
2623 10408 2.706190 GTGGGTCCATAAGATAGCCTGT 59.294 50.000 0.00 0.00 0.00 4.00
2624 10409 2.705658 TGGGTCCATAAGATAGCCTGTG 59.294 50.000 0.00 0.00 0.00 3.66
2625 10410 2.039084 GGGTCCATAAGATAGCCTGTGG 59.961 54.545 0.00 0.00 34.51 4.17
2626 10411 2.706190 GGTCCATAAGATAGCCTGTGGT 59.294 50.000 0.00 0.00 34.70 4.16
2627 10412 3.244249 GGTCCATAAGATAGCCTGTGGTC 60.244 52.174 0.00 0.00 34.70 4.02
2628 10413 2.972713 TCCATAAGATAGCCTGTGGTCC 59.027 50.000 0.00 0.00 34.70 4.46
2629 10414 2.039084 CCATAAGATAGCCTGTGGTCCC 59.961 54.545 0.00 0.00 30.81 4.46
2630 10415 1.802553 TAAGATAGCCTGTGGTCCCC 58.197 55.000 0.00 0.00 0.00 4.81
2631 10416 0.988678 AAGATAGCCTGTGGTCCCCC 60.989 60.000 0.00 0.00 0.00 5.40
2632 10417 1.692749 GATAGCCTGTGGTCCCCCA 60.693 63.158 0.00 0.00 38.87 4.96
2633 10418 1.230149 ATAGCCTGTGGTCCCCCAA 60.230 57.895 0.00 0.00 44.15 4.12
2634 10419 0.849094 ATAGCCTGTGGTCCCCCAAA 60.849 55.000 0.00 0.00 44.15 3.28
2635 10420 1.497309 TAGCCTGTGGTCCCCCAAAG 61.497 60.000 0.00 0.00 44.72 2.77
2636 10421 2.283173 CCTGTGGTCCCCCAAAGC 60.283 66.667 0.00 0.00 43.88 3.51
2637 10422 2.845345 CCTGTGGTCCCCCAAAGCT 61.845 63.158 0.00 0.00 43.88 3.74
2638 10423 1.303643 CTGTGGTCCCCCAAAGCTC 60.304 63.158 0.00 0.00 44.15 4.09
2639 10424 2.035783 GTGGTCCCCCAAAGCTCC 59.964 66.667 0.00 0.00 44.15 4.70
2640 10425 3.646715 TGGTCCCCCAAAGCTCCG 61.647 66.667 0.00 0.00 37.98 4.63
2641 10426 4.426313 GGTCCCCCAAAGCTCCGG 62.426 72.222 0.00 0.00 0.00 5.14
2646 10431 4.351054 CCCAAAGCTCCGGCCTGT 62.351 66.667 0.00 0.00 39.73 4.00
2647 10432 2.282462 CCAAAGCTCCGGCCTGTT 60.282 61.111 0.00 0.00 39.73 3.16
2648 10433 1.903404 CCAAAGCTCCGGCCTGTTT 60.903 57.895 0.00 0.00 39.73 2.83
2649 10434 0.608035 CCAAAGCTCCGGCCTGTTTA 60.608 55.000 0.00 0.00 39.73 2.01
2650 10435 1.243902 CAAAGCTCCGGCCTGTTTAA 58.756 50.000 0.00 0.00 39.73 1.52
2651 10436 1.611491 CAAAGCTCCGGCCTGTTTAAA 59.389 47.619 0.00 0.00 39.73 1.52
2652 10437 1.989706 AAGCTCCGGCCTGTTTAAAA 58.010 45.000 0.00 0.00 39.73 1.52
2653 10438 2.215942 AGCTCCGGCCTGTTTAAAAT 57.784 45.000 0.00 0.00 39.73 1.82
2654 10439 3.359695 AGCTCCGGCCTGTTTAAAATA 57.640 42.857 0.00 0.00 39.73 1.40
2655 10440 3.898482 AGCTCCGGCCTGTTTAAAATAT 58.102 40.909 0.00 0.00 39.73 1.28
2656 10441 5.043737 AGCTCCGGCCTGTTTAAAATATA 57.956 39.130 0.00 0.00 39.73 0.86
2657 10442 5.631119 AGCTCCGGCCTGTTTAAAATATAT 58.369 37.500 0.00 0.00 39.73 0.86
2658 10443 6.775708 AGCTCCGGCCTGTTTAAAATATATA 58.224 36.000 0.00 0.00 39.73 0.86
2659 10444 7.228590 AGCTCCGGCCTGTTTAAAATATATAA 58.771 34.615 0.00 0.00 39.73 0.98
2660 10445 7.888546 AGCTCCGGCCTGTTTAAAATATATAAT 59.111 33.333 0.00 0.00 39.73 1.28
2661 10446 7.968405 GCTCCGGCCTGTTTAAAATATATAATG 59.032 37.037 0.00 0.00 0.00 1.90
2662 10447 8.927675 TCCGGCCTGTTTAAAATATATAATGT 57.072 30.769 0.00 0.00 0.00 2.71
2689 10474 8.197988 GAGCGATCTCTACCTTTTTATTTTCA 57.802 34.615 0.00 0.00 36.42 2.69
2690 10475 8.561738 AGCGATCTCTACCTTTTTATTTTCAA 57.438 30.769 0.00 0.00 0.00 2.69
2691 10476 9.010029 AGCGATCTCTACCTTTTTATTTTCAAA 57.990 29.630 0.00 0.00 0.00 2.69
2692 10477 9.620660 GCGATCTCTACCTTTTTATTTTCAAAA 57.379 29.630 0.00 0.00 0.00 2.44
2721 10506 5.189180 AGAGATAGCATGTGGAAAGGAAAC 58.811 41.667 0.00 0.00 0.00 2.78
2745 10530 3.073678 TCTGAATTCCCATGTTGTCACG 58.926 45.455 2.27 0.00 0.00 4.35
2774 10559 1.731720 CAGAGCACCTACTGGAAAGC 58.268 55.000 0.00 0.00 37.04 3.51
2775 10560 1.002430 CAGAGCACCTACTGGAAAGCA 59.998 52.381 0.00 0.00 37.04 3.91
2776 10561 1.277557 AGAGCACCTACTGGAAAGCAG 59.722 52.381 0.00 0.00 37.04 4.24
2777 10562 1.276421 GAGCACCTACTGGAAAGCAGA 59.724 52.381 0.00 0.00 37.04 4.26
2778 10563 1.277557 AGCACCTACTGGAAAGCAGAG 59.722 52.381 0.00 0.00 37.04 3.35
2779 10564 1.731720 CACCTACTGGAAAGCAGAGC 58.268 55.000 0.00 0.00 37.04 4.09
2780 10565 1.002430 CACCTACTGGAAAGCAGAGCA 59.998 52.381 0.00 0.00 37.04 4.26
2781 10566 1.002544 ACCTACTGGAAAGCAGAGCAC 59.997 52.381 0.00 0.00 37.04 4.40
2782 10567 1.677217 CCTACTGGAAAGCAGAGCACC 60.677 57.143 0.00 0.00 34.57 5.01
2783 10568 1.277557 CTACTGGAAAGCAGAGCACCT 59.722 52.381 0.00 0.00 0.00 4.00
2784 10569 0.475906 ACTGGAAAGCAGAGCACCTT 59.524 50.000 0.00 0.00 0.00 3.50
2785 10570 1.163554 CTGGAAAGCAGAGCACCTTC 58.836 55.000 0.00 0.00 0.00 3.46
2786 10571 0.473755 TGGAAAGCAGAGCACCTTCA 59.526 50.000 0.00 0.00 0.00 3.02
2787 10572 1.133823 TGGAAAGCAGAGCACCTTCAA 60.134 47.619 0.00 0.00 0.00 2.69
2788 10573 1.268079 GGAAAGCAGAGCACCTTCAAC 59.732 52.381 0.00 0.00 0.00 3.18
2789 10574 1.949525 GAAAGCAGAGCACCTTCAACA 59.050 47.619 0.00 0.00 0.00 3.33
2790 10575 2.057137 AAGCAGAGCACCTTCAACAA 57.943 45.000 0.00 0.00 0.00 2.83
2791 10576 1.602311 AGCAGAGCACCTTCAACAAG 58.398 50.000 0.00 0.00 0.00 3.16
2792 10577 0.039708 GCAGAGCACCTTCAACAAGC 60.040 55.000 0.00 0.00 0.00 4.01
2793 10578 0.236711 CAGAGCACCTTCAACAAGCG 59.763 55.000 0.00 0.00 0.00 4.68
2794 10579 1.081840 GAGCACCTTCAACAAGCGC 60.082 57.895 0.00 0.00 0.00 5.92
2795 10580 1.510480 GAGCACCTTCAACAAGCGCT 61.510 55.000 2.64 2.64 38.76 5.92
2796 10581 1.081840 GCACCTTCAACAAGCGCTC 60.082 57.895 12.06 0.00 0.00 5.03
2797 10582 1.785041 GCACCTTCAACAAGCGCTCA 61.785 55.000 12.06 0.00 0.00 4.26
2798 10583 0.662619 CACCTTCAACAAGCGCTCAA 59.337 50.000 12.06 0.00 0.00 3.02
2799 10584 1.065401 CACCTTCAACAAGCGCTCAAA 59.935 47.619 12.06 0.00 0.00 2.69
2800 10585 1.748493 ACCTTCAACAAGCGCTCAAAA 59.252 42.857 12.06 0.11 0.00 2.44
2801 10586 2.165437 ACCTTCAACAAGCGCTCAAAAA 59.835 40.909 12.06 0.90 0.00 1.94
2819 10604 4.752661 AAAAATACCTCACGCGCTAAAA 57.247 36.364 5.73 0.00 0.00 1.52
2820 10605 4.752661 AAAATACCTCACGCGCTAAAAA 57.247 36.364 5.73 0.00 0.00 1.94
2866 10651 2.292103 AAAAACAGCGCTTCAGCAAA 57.708 40.000 7.50 0.00 42.21 3.68
2867 10652 1.559831 AAAACAGCGCTTCAGCAAAC 58.440 45.000 7.50 0.00 42.21 2.93
2868 10653 0.592247 AAACAGCGCTTCAGCAAACG 60.592 50.000 7.50 0.00 42.21 3.60
2883 10668 5.799542 AGCAAACGCTGTAAAATAAAACG 57.200 34.783 0.00 0.00 38.67 3.60
2884 10669 4.147479 AGCAAACGCTGTAAAATAAAACGC 59.853 37.500 0.00 0.00 38.67 4.84
2885 10670 4.600958 CAAACGCTGTAAAATAAAACGCG 58.399 39.130 3.53 3.53 41.17 6.01
2886 10671 2.235855 ACGCTGTAAAATAAAACGCGC 58.764 42.857 5.73 0.00 40.02 6.86
2887 10672 2.235020 CGCTGTAAAATAAAACGCGCA 58.765 42.857 5.73 0.00 34.12 6.09
2888 10673 2.024759 CGCTGTAAAATAAAACGCGCAC 59.975 45.455 5.73 0.00 34.12 5.34
2889 10674 2.974536 GCTGTAAAATAAAACGCGCACA 59.025 40.909 5.73 0.00 0.00 4.57
2890 10675 3.422546 GCTGTAAAATAAAACGCGCACAA 59.577 39.130 5.73 0.00 0.00 3.33
2891 10676 4.431086 GCTGTAAAATAAAACGCGCACAAG 60.431 41.667 5.73 0.00 0.00 3.16
2892 10677 3.975670 TGTAAAATAAAACGCGCACAAGG 59.024 39.130 5.73 0.00 0.00 3.61
2893 10678 3.357166 AAAATAAAACGCGCACAAGGA 57.643 38.095 5.73 0.00 0.00 3.36
2894 10679 3.357166 AAATAAAACGCGCACAAGGAA 57.643 38.095 5.73 0.00 0.00 3.36
2895 10680 2.325509 ATAAAACGCGCACAAGGAAC 57.674 45.000 5.73 0.00 0.00 3.62
2907 10692 4.278956 AGGAACTTTAGCGCACGG 57.721 55.556 11.47 0.00 27.25 4.94
2908 10693 1.375523 AGGAACTTTAGCGCACGGG 60.376 57.895 11.47 0.00 27.25 5.28
2909 10694 1.670083 GGAACTTTAGCGCACGGGT 60.670 57.895 11.47 0.00 0.00 5.28
2910 10695 1.495951 GAACTTTAGCGCACGGGTG 59.504 57.895 11.47 0.00 0.00 4.61
2911 10696 1.226030 GAACTTTAGCGCACGGGTGT 61.226 55.000 11.47 0.00 0.00 4.16
2924 10709 4.586235 GGTGTGTGTGGGGCTGCT 62.586 66.667 0.00 0.00 0.00 4.24
2925 10710 3.289834 GTGTGTGTGGGGCTGCTG 61.290 66.667 0.00 0.00 0.00 4.41
2926 10711 4.584518 TGTGTGTGGGGCTGCTGG 62.585 66.667 0.00 0.00 0.00 4.85
2938 10723 2.835605 CTGCTGGGCTGCAAATTTG 58.164 52.632 14.03 14.03 42.83 2.32
2939 10724 0.672401 CTGCTGGGCTGCAAATTTGG 60.672 55.000 19.47 5.27 42.83 3.28
2940 10725 1.376295 GCTGGGCTGCAAATTTGGG 60.376 57.895 19.47 0.00 0.00 4.12
2941 10726 1.297364 CTGGGCTGCAAATTTGGGG 59.703 57.895 19.47 0.00 0.00 4.96
2942 10727 2.046023 GGGCTGCAAATTTGGGGC 60.046 61.111 19.47 6.19 0.00 5.80
2943 10728 2.434709 GGCTGCAAATTTGGGGCG 60.435 61.111 19.47 3.96 0.00 6.13
2944 10729 2.343387 GCTGCAAATTTGGGGCGT 59.657 55.556 19.47 0.00 0.00 5.68
2945 10730 1.737735 GCTGCAAATTTGGGGCGTC 60.738 57.895 19.47 2.57 0.00 5.19
2946 10731 1.444212 CTGCAAATTTGGGGCGTCG 60.444 57.895 19.47 0.00 0.00 5.12
2947 10732 2.126110 GCAAATTTGGGGCGTCGG 60.126 61.111 19.47 0.00 0.00 4.79
2948 10733 2.631580 GCAAATTTGGGGCGTCGGA 61.632 57.895 19.47 0.00 0.00 4.55
2949 10734 1.944234 GCAAATTTGGGGCGTCGGAT 61.944 55.000 19.47 0.00 0.00 4.18
2950 10735 0.530288 CAAATTTGGGGCGTCGGATT 59.470 50.000 10.49 0.00 0.00 3.01
2951 10736 0.530288 AAATTTGGGGCGTCGGATTG 59.470 50.000 0.00 0.00 0.00 2.67
2952 10737 0.610785 AATTTGGGGCGTCGGATTGT 60.611 50.000 0.00 0.00 0.00 2.71
2953 10738 1.312371 ATTTGGGGCGTCGGATTGTG 61.312 55.000 0.00 0.00 0.00 3.33
2957 10742 3.554692 GGCGTCGGATTGTGCGAG 61.555 66.667 0.00 0.00 41.84 5.03
2958 10743 4.210304 GCGTCGGATTGTGCGAGC 62.210 66.667 0.00 0.00 41.84 5.03
2959 10744 3.902063 CGTCGGATTGTGCGAGCG 61.902 66.667 0.00 0.00 41.84 5.03
2960 10745 3.554692 GTCGGATTGTGCGAGCGG 61.555 66.667 0.00 0.00 41.84 5.52
2961 10746 4.812476 TCGGATTGTGCGAGCGGG 62.812 66.667 0.00 0.00 34.66 6.13
2963 10748 4.778143 GGATTGTGCGAGCGGGGT 62.778 66.667 0.00 0.00 0.00 4.95
2964 10749 2.185867 GATTGTGCGAGCGGGGTA 59.814 61.111 0.00 0.00 0.00 3.69
2965 10750 1.227556 GATTGTGCGAGCGGGGTAT 60.228 57.895 0.00 0.00 0.00 2.73
2966 10751 0.814010 GATTGTGCGAGCGGGGTATT 60.814 55.000 0.00 0.00 0.00 1.89
2967 10752 1.095228 ATTGTGCGAGCGGGGTATTG 61.095 55.000 0.00 0.00 0.00 1.90
2968 10753 3.573491 GTGCGAGCGGGGTATTGC 61.573 66.667 0.00 0.00 0.00 3.56
2969 10754 3.781307 TGCGAGCGGGGTATTGCT 61.781 61.111 0.00 0.00 45.90 3.91
2970 10755 3.272334 GCGAGCGGGGTATTGCTG 61.272 66.667 0.00 0.00 42.60 4.41
2971 10756 2.588877 CGAGCGGGGTATTGCTGG 60.589 66.667 0.00 0.00 42.60 4.85
2972 10757 2.590092 GAGCGGGGTATTGCTGGT 59.410 61.111 0.00 0.00 42.60 4.00
2973 10758 1.819632 GAGCGGGGTATTGCTGGTG 60.820 63.158 0.00 0.00 42.60 4.17
2974 10759 2.828549 GCGGGGTATTGCTGGTGG 60.829 66.667 0.00 0.00 0.00 4.61
2975 10760 2.124320 CGGGGTATTGCTGGTGGG 60.124 66.667 0.00 0.00 0.00 4.61
2976 10761 2.278738 GGGGTATTGCTGGTGGGG 59.721 66.667 0.00 0.00 0.00 4.96
2977 10762 2.442087 GGGTATTGCTGGTGGGGC 60.442 66.667 0.00 0.00 0.00 5.80
2978 10763 2.442087 GGTATTGCTGGTGGGGCC 60.442 66.667 0.00 0.00 37.90 5.80
2979 10764 2.828549 GTATTGCTGGTGGGGCCG 60.829 66.667 0.00 0.00 41.21 6.13
2980 10765 4.813235 TATTGCTGGTGGGGCCGC 62.813 66.667 14.01 14.01 41.21 6.53
2996 10781 2.203337 GCTGGATTGGGCGCCATA 60.203 61.111 30.85 16.13 31.53 2.74
2997 10782 1.604593 GCTGGATTGGGCGCCATAT 60.605 57.895 30.85 20.56 31.53 1.78
2998 10783 1.181098 GCTGGATTGGGCGCCATATT 61.181 55.000 30.85 12.87 31.53 1.28
2999 10784 1.331214 CTGGATTGGGCGCCATATTT 58.669 50.000 30.85 7.62 31.53 1.40
3000 10785 1.688197 CTGGATTGGGCGCCATATTTT 59.312 47.619 30.85 5.96 31.53 1.82
3001 10786 2.102925 CTGGATTGGGCGCCATATTTTT 59.897 45.455 30.85 4.74 31.53 1.94
3002 10787 2.158986 TGGATTGGGCGCCATATTTTTG 60.159 45.455 30.85 0.00 31.53 2.44
3003 10788 2.158971 GGATTGGGCGCCATATTTTTGT 60.159 45.455 30.85 2.46 31.53 2.83
3004 10789 2.376808 TTGGGCGCCATATTTTTGTG 57.623 45.000 30.85 0.00 31.53 3.33
3005 10790 0.108424 TGGGCGCCATATTTTTGTGC 60.108 50.000 30.85 6.35 0.00 4.57
3006 10791 0.108424 GGGCGCCATATTTTTGTGCA 60.108 50.000 30.85 0.00 0.00 4.57
3007 10792 1.473080 GGGCGCCATATTTTTGTGCAT 60.473 47.619 30.85 0.00 0.00 3.96
3008 10793 1.860326 GGCGCCATATTTTTGTGCATC 59.140 47.619 24.80 0.00 0.00 3.91
3009 10794 1.860326 GCGCCATATTTTTGTGCATCC 59.140 47.619 0.00 0.00 0.00 3.51
3010 10795 2.118683 CGCCATATTTTTGTGCATCCG 58.881 47.619 0.00 0.00 0.00 4.18
3011 10796 2.472816 GCCATATTTTTGTGCATCCGG 58.527 47.619 0.00 0.00 0.00 5.14
3012 10797 2.100584 GCCATATTTTTGTGCATCCGGA 59.899 45.455 6.61 6.61 0.00 5.14
3013 10798 3.430098 GCCATATTTTTGTGCATCCGGAA 60.430 43.478 9.01 0.00 0.00 4.30
3014 10799 4.753233 CCATATTTTTGTGCATCCGGAAA 58.247 39.130 9.01 0.00 0.00 3.13
3015 10800 5.174395 CCATATTTTTGTGCATCCGGAAAA 58.826 37.500 9.01 2.38 0.00 2.29
3016 10801 5.816777 CCATATTTTTGTGCATCCGGAAAAT 59.183 36.000 9.01 10.73 35.06 1.82
3017 10802 6.018832 CCATATTTTTGTGCATCCGGAAAATC 60.019 38.462 9.01 0.17 33.45 2.17
3018 10803 4.599047 TTTTTGTGCATCCGGAAAATCT 57.401 36.364 9.01 0.00 0.00 2.40
3019 10804 3.848272 TTTGTGCATCCGGAAAATCTC 57.152 42.857 9.01 0.00 0.00 2.75
3020 10805 2.787473 TGTGCATCCGGAAAATCTCT 57.213 45.000 9.01 0.00 0.00 3.10
3021 10806 2.632377 TGTGCATCCGGAAAATCTCTC 58.368 47.619 9.01 0.00 0.00 3.20
3022 10807 1.943340 GTGCATCCGGAAAATCTCTCC 59.057 52.381 9.01 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.672673 ATGTTTTGCTCTGTAAGTAGTTCATAT 57.327 29.630 0.00 0.00 33.76 1.78
1 2 8.935844 CATGTTTTGCTCTGTAAGTAGTTCATA 58.064 33.333 0.00 0.00 33.76 2.15
4 5 7.042051 TCACATGTTTTGCTCTGTAAGTAGTTC 60.042 37.037 0.00 0.00 33.76 3.01
5 6 6.765989 TCACATGTTTTGCTCTGTAAGTAGTT 59.234 34.615 0.00 0.00 33.76 2.24
7 8 6.785488 TCACATGTTTTGCTCTGTAAGTAG 57.215 37.500 0.00 0.00 33.76 2.57
8 9 7.661437 AGATTCACATGTTTTGCTCTGTAAGTA 59.339 33.333 0.00 0.00 33.76 2.24
9 10 6.488006 AGATTCACATGTTTTGCTCTGTAAGT 59.512 34.615 0.00 0.00 33.76 2.24
10 11 6.906659 AGATTCACATGTTTTGCTCTGTAAG 58.093 36.000 0.00 0.00 0.00 2.34
11 12 6.882610 AGATTCACATGTTTTGCTCTGTAA 57.117 33.333 0.00 0.00 0.00 2.41
12 13 6.934083 TGTAGATTCACATGTTTTGCTCTGTA 59.066 34.615 0.00 0.00 0.00 2.74
13 14 5.764686 TGTAGATTCACATGTTTTGCTCTGT 59.235 36.000 0.00 0.00 0.00 3.41
14 15 6.072838 AGTGTAGATTCACATGTTTTGCTCTG 60.073 38.462 0.00 0.00 40.37 3.35
15 16 6.000219 AGTGTAGATTCACATGTTTTGCTCT 59.000 36.000 0.00 0.00 40.37 4.09
16 17 6.148480 AGAGTGTAGATTCACATGTTTTGCTC 59.852 38.462 0.00 0.00 40.37 4.26
20 21 9.561069 AGTTTAGAGTGTAGATTCACATGTTTT 57.439 29.630 0.00 0.00 40.37 2.43
26 27 9.244292 AGACATAGTTTAGAGTGTAGATTCACA 57.756 33.333 0.00 0.00 40.37 3.58
48 49 6.429078 GGACTACATACGGATGTACATAGACA 59.571 42.308 16.71 0.00 44.77 3.41
55 56 7.823665 TCAATATGGACTACATACGGATGTAC 58.176 38.462 16.71 8.04 44.77 2.90
58 59 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
67 68 8.506168 TTTGTGGAGATTTCAATATGGACTAC 57.494 34.615 0.00 0.00 0.00 2.73
72 73 7.174107 AGGTTTTGTGGAGATTTCAATATGG 57.826 36.000 0.00 0.00 0.00 2.74
84 85 9.158233 TCGTTCTTAAATATAGGTTTTGTGGAG 57.842 33.333 0.00 0.00 0.00 3.86
85 86 9.504708 TTCGTTCTTAAATATAGGTTTTGTGGA 57.495 29.630 0.00 0.00 0.00 4.02
87 88 9.769093 CCTTCGTTCTTAAATATAGGTTTTGTG 57.231 33.333 0.00 0.00 0.00 3.33
88 89 8.953313 CCCTTCGTTCTTAAATATAGGTTTTGT 58.047 33.333 0.00 0.00 0.00 2.83
89 90 8.953313 ACCCTTCGTTCTTAAATATAGGTTTTG 58.047 33.333 0.00 0.00 0.00 2.44
108 109 5.657474 TGTATCTAGCAGTTAAACCCTTCG 58.343 41.667 0.00 0.00 0.00 3.79
109 110 9.780186 ATATTGTATCTAGCAGTTAAACCCTTC 57.220 33.333 0.00 0.00 0.00 3.46
150 160 8.366671 ACAGAAATATAAGAGCGTTTGGATAC 57.633 34.615 0.00 0.00 0.00 2.24
153 163 7.324935 TGTACAGAAATATAAGAGCGTTTGGA 58.675 34.615 0.00 0.00 0.00 3.53
154 164 7.534085 TGTACAGAAATATAAGAGCGTTTGG 57.466 36.000 0.00 0.00 0.00 3.28
155 165 9.478019 CTTTGTACAGAAATATAAGAGCGTTTG 57.522 33.333 0.00 0.00 0.00 2.93
157 167 8.038944 TCCTTTGTACAGAAATATAAGAGCGTT 58.961 33.333 0.00 0.00 0.00 4.84
158 168 7.553334 TCCTTTGTACAGAAATATAAGAGCGT 58.447 34.615 0.00 0.00 0.00 5.07
159 169 8.420374 TTCCTTTGTACAGAAATATAAGAGCG 57.580 34.615 0.00 0.00 0.00 5.03
160 170 9.384764 ACTTCCTTTGTACAGAAATATAAGAGC 57.615 33.333 0.00 0.00 0.00 4.09
177 187 7.029563 GGCAGAACAATATTGTACTTCCTTTG 58.970 38.462 21.07 10.83 41.31 2.77
179 189 6.245408 TGGCAGAACAATATTGTACTTCCTT 58.755 36.000 21.07 3.97 41.31 3.36
219 229 0.387929 ATGGTACGAGTATGGGCGTG 59.612 55.000 0.00 0.00 41.35 5.34
234 244 1.079127 GGTAGTGCGTGCTCATGGT 60.079 57.895 0.00 0.00 0.00 3.55
235 245 0.391661 AAGGTAGTGCGTGCTCATGG 60.392 55.000 0.00 0.00 0.00 3.66
241 251 0.438830 CGAGAAAAGGTAGTGCGTGC 59.561 55.000 0.00 0.00 0.00 5.34
243 253 1.612463 AGTCGAGAAAAGGTAGTGCGT 59.388 47.619 0.00 0.00 0.00 5.24
244 254 2.349297 AGTCGAGAAAAGGTAGTGCG 57.651 50.000 0.00 0.00 0.00 5.34
343 355 1.879796 GCATCTCCCCATCAATCCGTC 60.880 57.143 0.00 0.00 0.00 4.79
364 376 5.476599 TGGACACATCAATCCTTTAAACAGG 59.523 40.000 0.00 0.00 35.86 4.00
373 385 5.630121 TGTAAACTTGGACACATCAATCCT 58.370 37.500 0.00 0.00 35.86 3.24
394 410 3.881220 TCCCGTGAGAAAAAGTCTTTGT 58.119 40.909 0.00 0.00 36.41 2.83
406 422 1.605058 GGCTACTGCTTCCCGTGAGA 61.605 60.000 0.00 0.00 39.59 3.27
407 423 1.153549 GGCTACTGCTTCCCGTGAG 60.154 63.158 0.00 0.00 39.59 3.51
409 425 2.125106 GGGCTACTGCTTCCCGTG 60.125 66.667 0.00 0.00 39.59 4.94
426 462 0.166814 GCAAAAGCAGAGCACCTACG 59.833 55.000 0.00 0.00 0.00 3.51
536 3671 7.545615 AGACCAAGTGATTTGTTTCAAGAAAAC 59.454 33.333 0.00 0.00 46.22 2.43
541 3676 5.284079 CCAGACCAAGTGATTTGTTTCAAG 58.716 41.667 0.00 0.00 34.87 3.02
542 3677 4.441356 GCCAGACCAAGTGATTTGTTTCAA 60.441 41.667 0.00 0.00 34.87 2.69
543 3678 3.068024 GCCAGACCAAGTGATTTGTTTCA 59.932 43.478 0.00 0.00 34.87 2.69
544 3679 3.319122 AGCCAGACCAAGTGATTTGTTTC 59.681 43.478 0.00 0.00 34.87 2.78
548 3683 4.074970 ACTAAGCCAGACCAAGTGATTTG 58.925 43.478 0.00 0.00 36.50 2.32
603 3738 6.811253 TGGTGTCAAAATTAGTGTATCCAC 57.189 37.500 0.00 0.00 42.17 4.02
604 3739 7.120579 GTCATGGTGTCAAAATTAGTGTATCCA 59.879 37.037 0.00 0.00 0.00 3.41
605 3740 7.120579 TGTCATGGTGTCAAAATTAGTGTATCC 59.879 37.037 0.00 0.00 0.00 2.59
606 3741 8.039603 TGTCATGGTGTCAAAATTAGTGTATC 57.960 34.615 0.00 0.00 0.00 2.24
607 3742 7.994425 TGTCATGGTGTCAAAATTAGTGTAT 57.006 32.000 0.00 0.00 0.00 2.29
608 3743 7.809546 TTGTCATGGTGTCAAAATTAGTGTA 57.190 32.000 0.00 0.00 0.00 2.90
609 3744 6.707440 TTGTCATGGTGTCAAAATTAGTGT 57.293 33.333 0.00 0.00 0.00 3.55
610 3745 8.489559 CAATTTGTCATGGTGTCAAAATTAGTG 58.510 33.333 6.48 0.00 38.46 2.74
611 3746 8.203485 ACAATTTGTCATGGTGTCAAAATTAGT 58.797 29.630 0.00 2.23 38.46 2.24
612 3747 8.592105 ACAATTTGTCATGGTGTCAAAATTAG 57.408 30.769 0.00 1.78 38.46 1.73
613 3748 8.954950 AACAATTTGTCATGGTGTCAAAATTA 57.045 26.923 1.83 0.00 38.46 1.40
614 3749 7.862512 AACAATTTGTCATGGTGTCAAAATT 57.137 28.000 1.83 0.00 38.46 1.82
615 3750 9.558396 AATAACAATTTGTCATGGTGTCAAAAT 57.442 25.926 1.83 0.00 38.46 1.82
616 3751 8.954950 AATAACAATTTGTCATGGTGTCAAAA 57.045 26.923 1.83 0.00 38.46 2.44
617 3752 9.689976 CTAATAACAATTTGTCATGGTGTCAAA 57.310 29.630 1.83 5.19 39.07 2.69
618 3753 8.855110 ACTAATAACAATTTGTCATGGTGTCAA 58.145 29.630 1.83 0.00 0.00 3.18
643 3778 5.005779 CGACTATGTGCTGTTATTTCTGGAC 59.994 44.000 0.00 0.00 0.00 4.02
730 3877 0.321387 CTCTGGCTCACATGCACAGT 60.321 55.000 0.00 0.00 34.86 3.55
757 3904 1.484240 AGGATGAAGGTGACTAGCAGC 59.516 52.381 7.89 7.89 42.68 5.25
758 3905 3.902881 AAGGATGAAGGTGACTAGCAG 57.097 47.619 0.00 0.00 42.68 4.24
759 3906 4.640771 AAAAGGATGAAGGTGACTAGCA 57.359 40.909 0.00 0.00 42.68 3.49
765 3913 3.657727 AGAGGGAAAAAGGATGAAGGTGA 59.342 43.478 0.00 0.00 0.00 4.02
767 3915 3.919554 AGAGAGGGAAAAAGGATGAAGGT 59.080 43.478 0.00 0.00 0.00 3.50
782 3931 5.560724 TGGAAATGTTTTCTACAGAGAGGG 58.439 41.667 0.52 0.00 40.83 4.30
783 3932 7.693969 AATGGAAATGTTTTCTACAGAGAGG 57.306 36.000 0.52 0.00 40.83 3.69
798 3947 8.344831 TCTTCGTGCAATATAGAAATGGAAATG 58.655 33.333 0.00 0.00 0.00 2.32
799 3948 8.345565 GTCTTCGTGCAATATAGAAATGGAAAT 58.654 33.333 0.00 0.00 0.00 2.17
816 3965 0.792640 CACTCCATGTGTCTTCGTGC 59.207 55.000 0.00 0.00 41.53 5.34
817 3966 1.270305 ACCACTCCATGTGTCTTCGTG 60.270 52.381 0.00 0.00 44.81 4.35
818 3967 1.048601 ACCACTCCATGTGTCTTCGT 58.951 50.000 0.00 0.00 44.81 3.85
819 3968 1.800586 CAACCACTCCATGTGTCTTCG 59.199 52.381 0.00 0.00 44.81 3.79
820 3969 2.154462 CCAACCACTCCATGTGTCTTC 58.846 52.381 0.00 0.00 44.81 2.87
822 3971 1.140312 ACCAACCACTCCATGTGTCT 58.860 50.000 0.00 0.00 44.81 3.41
823 3972 1.238439 CACCAACCACTCCATGTGTC 58.762 55.000 0.00 0.00 44.81 3.67
825 3974 1.855213 CGCACCAACCACTCCATGTG 61.855 60.000 0.00 0.00 45.80 3.21
826 3975 1.600636 CGCACCAACCACTCCATGT 60.601 57.895 0.00 0.00 0.00 3.21
863 4041 2.789203 GAGCGTAGAAACAGCGGCG 61.789 63.158 0.51 0.51 35.78 6.46
885 4063 0.037734 GGAACCAAACCGGGTGAGAT 59.962 55.000 6.32 0.00 41.32 2.75
927 4122 2.811317 GTCGCTTCCTCACGCCAG 60.811 66.667 0.00 0.00 0.00 4.85
942 4137 1.731720 CTAGCTTGACTGGGCTTGTC 58.268 55.000 0.00 4.05 39.65 3.18
996 4213 1.740025 GCTGAGCTACTCGCCATTTTT 59.260 47.619 0.00 0.00 40.39 1.94
1013 4230 1.091771 CAGGACGGCCAGTATTGCTG 61.092 60.000 11.69 0.00 44.63 4.41
1014 4231 1.221840 CAGGACGGCCAGTATTGCT 59.778 57.895 11.69 0.00 36.29 3.91
1015 4232 1.819632 CCAGGACGGCCAGTATTGC 60.820 63.158 11.69 0.00 36.29 3.56
1764 6434 0.394488 TGAACACGCCCTGGTTGAAA 60.394 50.000 0.00 0.00 0.00 2.69
1797 6467 2.135933 GTGGTCTTGTTCTTCACGAGG 58.864 52.381 0.00 0.00 37.49 4.63
1803 6473 1.860078 CGCGGTGGTCTTGTTCTTC 59.140 57.895 0.00 0.00 0.00 2.87
1994 6688 2.440430 CGAAGCCCTCCTCCTCGA 60.440 66.667 0.00 0.00 0.00 4.04
2040 6789 2.512515 CTAGCCTGCTTGCCGACC 60.513 66.667 0.00 0.00 0.00 4.79
2121 6870 1.980036 AGCATGCCAAGAAACCCAAAT 59.020 42.857 15.66 0.00 0.00 2.32
2185 6941 1.243902 TGCAAAGACGATCCAAACCC 58.756 50.000 0.00 0.00 0.00 4.11
2199 6963 5.999600 TCAAGAACTCAAGATCAGATGCAAA 59.000 36.000 0.00 0.00 0.00 3.68
2355 7201 1.408822 CCAGTATCACTTTCAGCCCCC 60.409 57.143 0.00 0.00 0.00 5.40
2436 7327 1.104630 TTGTTCACGGTGTTTTCCCC 58.895 50.000 8.17 0.00 0.00 4.81
2437 7328 2.359531 TGATTGTTCACGGTGTTTTCCC 59.640 45.455 8.17 0.00 0.00 3.97
2439 7330 5.173131 GTGATTGATTGTTCACGGTGTTTTC 59.827 40.000 8.17 1.05 33.57 2.29
2440 7331 5.040635 GTGATTGATTGTTCACGGTGTTTT 58.959 37.500 8.17 0.00 33.57 2.43
2452 7364 5.188434 CAGTGACCCATAGTGATTGATTGT 58.812 41.667 0.00 0.00 0.00 2.71
2463 7375 1.224592 GCCACCCAGTGACCCATAG 59.775 63.158 0.00 0.00 35.23 2.23
2502 7416 3.382803 ATCGAGCTGGGCTGCACTC 62.383 63.158 2.50 2.41 39.88 3.51
2524 7438 1.539827 GCATTCCAGTAACCACACCAC 59.460 52.381 0.00 0.00 0.00 4.16
2527 7441 2.778299 TCTGCATTCCAGTAACCACAC 58.222 47.619 0.00 0.00 42.38 3.82
2528 7442 3.008923 TGATCTGCATTCCAGTAACCACA 59.991 43.478 0.00 0.00 42.38 4.17
2529 7443 3.609853 TGATCTGCATTCCAGTAACCAC 58.390 45.455 0.00 0.00 42.38 4.16
2530 7444 3.998913 TGATCTGCATTCCAGTAACCA 57.001 42.857 0.00 0.00 42.38 3.67
2531 7445 4.943705 TCTTTGATCTGCATTCCAGTAACC 59.056 41.667 0.00 0.00 42.38 2.85
2535 7449 4.597004 ACATCTTTGATCTGCATTCCAGT 58.403 39.130 0.00 0.00 42.38 4.00
2536 7450 5.578005 AACATCTTTGATCTGCATTCCAG 57.422 39.130 0.00 0.00 43.17 3.86
2537 7451 5.105635 GGAAACATCTTTGATCTGCATTCCA 60.106 40.000 10.04 0.00 33.08 3.53
2538 7452 5.346522 GGAAACATCTTTGATCTGCATTCC 58.653 41.667 0.00 0.00 0.00 3.01
2539 7453 5.032863 CGGAAACATCTTTGATCTGCATTC 58.967 41.667 0.00 0.00 0.00 2.67
2540 7454 4.460382 ACGGAAACATCTTTGATCTGCATT 59.540 37.500 0.00 0.00 0.00 3.56
2541 7455 4.012374 ACGGAAACATCTTTGATCTGCAT 58.988 39.130 0.00 0.00 0.00 3.96
2542 7456 3.411446 ACGGAAACATCTTTGATCTGCA 58.589 40.909 0.00 0.00 0.00 4.41
2543 7457 4.083324 TCAACGGAAACATCTTTGATCTGC 60.083 41.667 0.00 0.00 0.00 4.26
2544 7458 5.611796 TCAACGGAAACATCTTTGATCTG 57.388 39.130 0.00 0.00 0.00 2.90
2545 7459 5.765182 AGTTCAACGGAAACATCTTTGATCT 59.235 36.000 0.00 0.00 34.13 2.75
2546 7460 6.002062 AGTTCAACGGAAACATCTTTGATC 57.998 37.500 0.00 0.00 34.13 2.92
2566 10351 2.173569 AGCCTCCTGTTCTTGACAAGTT 59.826 45.455 14.75 0.00 37.93 2.66
2573 10358 2.503895 AATCCAGCCTCCTGTTCTTG 57.496 50.000 0.00 0.00 37.38 3.02
2602 10387 2.706190 ACAGGCTATCTTATGGACCCAC 59.294 50.000 0.00 0.00 0.00 4.61
2603 10388 2.705658 CACAGGCTATCTTATGGACCCA 59.294 50.000 0.00 0.00 0.00 4.51
2605 10390 2.706190 ACCACAGGCTATCTTATGGACC 59.294 50.000 0.00 0.00 0.00 4.46
2606 10391 3.244249 GGACCACAGGCTATCTTATGGAC 60.244 52.174 0.00 0.00 0.00 4.02
2607 10392 2.972713 GGACCACAGGCTATCTTATGGA 59.027 50.000 0.00 0.00 0.00 3.41
2608 10393 2.039084 GGGACCACAGGCTATCTTATGG 59.961 54.545 0.00 0.00 0.00 2.74
2609 10394 3.409026 GGGACCACAGGCTATCTTATG 57.591 52.381 0.00 0.00 0.00 1.90
2629 10414 3.868200 AACAGGCCGGAGCTTTGGG 62.868 63.158 10.86 1.24 39.73 4.12
2630 10415 0.608035 TAAACAGGCCGGAGCTTTGG 60.608 55.000 10.86 0.95 39.73 3.28
2631 10416 1.243902 TTAAACAGGCCGGAGCTTTG 58.756 50.000 10.86 0.00 39.73 2.77
2632 10417 1.989706 TTTAAACAGGCCGGAGCTTT 58.010 45.000 10.86 2.32 39.73 3.51
2633 10418 1.989706 TTTTAAACAGGCCGGAGCTT 58.010 45.000 10.86 2.42 39.73 3.74
2634 10419 2.215942 ATTTTAAACAGGCCGGAGCT 57.784 45.000 10.86 0.00 39.73 4.09
2635 10420 5.959618 ATATATTTTAAACAGGCCGGAGC 57.040 39.130 10.86 0.00 38.76 4.70
2636 10421 9.010029 ACATTATATATTTTAAACAGGCCGGAG 57.990 33.333 10.86 0.00 0.00 4.63
2637 10422 8.927675 ACATTATATATTTTAAACAGGCCGGA 57.072 30.769 10.86 0.00 0.00 5.14
2664 10449 8.197988 TGAAAATAAAAAGGTAGAGATCGCTC 57.802 34.615 0.82 0.00 41.62 5.03
2665 10450 8.561738 TTGAAAATAAAAAGGTAGAGATCGCT 57.438 30.769 3.88 3.88 0.00 4.93
2666 10451 9.620660 TTTTGAAAATAAAAAGGTAGAGATCGC 57.379 29.630 0.00 0.00 0.00 4.58
2694 10479 6.248433 TCCTTTCCACATGCTATCTCTTTTT 58.752 36.000 0.00 0.00 0.00 1.94
2695 10480 5.819991 TCCTTTCCACATGCTATCTCTTTT 58.180 37.500 0.00 0.00 0.00 2.27
2696 10481 5.441718 TCCTTTCCACATGCTATCTCTTT 57.558 39.130 0.00 0.00 0.00 2.52
2697 10482 5.441718 TTCCTTTCCACATGCTATCTCTT 57.558 39.130 0.00 0.00 0.00 2.85
2698 10483 5.189180 GTTTCCTTTCCACATGCTATCTCT 58.811 41.667 0.00 0.00 0.00 3.10
2699 10484 4.336713 GGTTTCCTTTCCACATGCTATCTC 59.663 45.833 0.00 0.00 0.00 2.75
2700 10485 4.263905 TGGTTTCCTTTCCACATGCTATCT 60.264 41.667 0.00 0.00 0.00 1.98
2701 10486 4.016444 TGGTTTCCTTTCCACATGCTATC 58.984 43.478 0.00 0.00 0.00 2.08
2702 10487 4.046286 TGGTTTCCTTTCCACATGCTAT 57.954 40.909 0.00 0.00 0.00 2.97
2703 10488 3.517296 TGGTTTCCTTTCCACATGCTA 57.483 42.857 0.00 0.00 0.00 3.49
2704 10489 2.380064 TGGTTTCCTTTCCACATGCT 57.620 45.000 0.00 0.00 0.00 3.79
2707 10492 4.387026 TCAGATGGTTTCCTTTCCACAT 57.613 40.909 0.00 0.00 36.50 3.21
2721 10506 4.018490 TGACAACATGGGAATTCAGATGG 58.982 43.478 16.26 6.03 0.00 3.51
2774 10559 0.236711 CGCTTGTTGAAGGTGCTCTG 59.763 55.000 0.00 0.00 0.00 3.35
2775 10560 1.510480 GCGCTTGTTGAAGGTGCTCT 61.510 55.000 0.00 0.00 34.21 4.09
2776 10561 1.081840 GCGCTTGTTGAAGGTGCTC 60.082 57.895 0.00 0.00 34.21 4.26
2777 10562 1.526917 AGCGCTTGTTGAAGGTGCT 60.527 52.632 2.64 0.00 41.18 4.40
2778 10563 1.081840 GAGCGCTTGTTGAAGGTGC 60.082 57.895 13.26 0.00 36.82 5.01
2779 10564 0.662619 TTGAGCGCTTGTTGAAGGTG 59.337 50.000 13.26 0.00 0.00 4.00
2780 10565 1.388547 TTTGAGCGCTTGTTGAAGGT 58.611 45.000 13.26 0.00 0.00 3.50
2781 10566 2.490328 TTTTGAGCGCTTGTTGAAGG 57.510 45.000 13.26 0.00 0.00 3.46
2798 10583 4.752661 TTTTAGCGCGTGAGGTATTTTT 57.247 36.364 8.43 0.00 0.00 1.94
2799 10584 4.752661 TTTTTAGCGCGTGAGGTATTTT 57.247 36.364 8.43 0.00 0.00 1.82
2847 10632 1.926510 GTTTGCTGAAGCGCTGTTTTT 59.073 42.857 12.58 0.00 45.83 1.94
2848 10633 1.559831 GTTTGCTGAAGCGCTGTTTT 58.440 45.000 12.58 0.00 45.83 2.43
2849 10634 0.592247 CGTTTGCTGAAGCGCTGTTT 60.592 50.000 12.58 0.00 45.83 2.83
2850 10635 1.009675 CGTTTGCTGAAGCGCTGTT 60.010 52.632 12.58 0.00 45.83 3.16
2851 10636 2.633657 CGTTTGCTGAAGCGCTGT 59.366 55.556 12.58 0.03 45.83 4.40
2862 10647 4.371046 GCGTTTTATTTTACAGCGTTTGC 58.629 39.130 0.00 0.00 43.24 3.68
2863 10648 4.600958 CGCGTTTTATTTTACAGCGTTTG 58.399 39.130 0.00 0.00 41.04 2.93
2864 10649 3.118319 GCGCGTTTTATTTTACAGCGTTT 59.882 39.130 8.43 0.00 46.55 3.60
2865 10650 2.653113 GCGCGTTTTATTTTACAGCGTT 59.347 40.909 8.43 0.00 46.55 4.84
2866 10651 2.235855 GCGCGTTTTATTTTACAGCGT 58.764 42.857 8.43 0.00 46.55 5.07
2868 10653 2.974536 TGTGCGCGTTTTATTTTACAGC 59.025 40.909 8.43 0.00 0.00 4.40
2869 10654 4.087930 CCTTGTGCGCGTTTTATTTTACAG 59.912 41.667 8.43 0.00 0.00 2.74
2870 10655 3.975670 CCTTGTGCGCGTTTTATTTTACA 59.024 39.130 8.43 0.00 0.00 2.41
2871 10656 4.220572 TCCTTGTGCGCGTTTTATTTTAC 58.779 39.130 8.43 0.00 0.00 2.01
2872 10657 4.485024 TCCTTGTGCGCGTTTTATTTTA 57.515 36.364 8.43 0.00 0.00 1.52
2873 10658 3.357166 TCCTTGTGCGCGTTTTATTTT 57.643 38.095 8.43 0.00 0.00 1.82
2874 10659 3.047093 GTTCCTTGTGCGCGTTTTATTT 58.953 40.909 8.43 0.00 0.00 1.40
2875 10660 2.292292 AGTTCCTTGTGCGCGTTTTATT 59.708 40.909 8.43 0.00 0.00 1.40
2876 10661 1.877443 AGTTCCTTGTGCGCGTTTTAT 59.123 42.857 8.43 0.00 0.00 1.40
2877 10662 1.301423 AGTTCCTTGTGCGCGTTTTA 58.699 45.000 8.43 0.00 0.00 1.52
2878 10663 0.454196 AAGTTCCTTGTGCGCGTTTT 59.546 45.000 8.43 0.00 0.00 2.43
2879 10664 0.454196 AAAGTTCCTTGTGCGCGTTT 59.546 45.000 8.43 0.00 0.00 3.60
2880 10665 1.263217 CTAAAGTTCCTTGTGCGCGTT 59.737 47.619 8.43 0.00 0.00 4.84
2881 10666 0.865769 CTAAAGTTCCTTGTGCGCGT 59.134 50.000 8.43 0.00 0.00 6.01
2882 10667 0.452784 GCTAAAGTTCCTTGTGCGCG 60.453 55.000 0.00 0.00 0.00 6.86
2883 10668 0.452784 CGCTAAAGTTCCTTGTGCGC 60.453 55.000 0.00 0.00 38.38 6.09
2884 10669 0.452784 GCGCTAAAGTTCCTTGTGCG 60.453 55.000 0.00 14.94 43.32 5.34
2885 10670 0.591170 TGCGCTAAAGTTCCTTGTGC 59.409 50.000 9.73 0.00 35.09 4.57
2886 10671 1.398451 CGTGCGCTAAAGTTCCTTGTG 60.398 52.381 9.73 0.00 0.00 3.33
2887 10672 0.865769 CGTGCGCTAAAGTTCCTTGT 59.134 50.000 9.73 0.00 0.00 3.16
2888 10673 0.165944 CCGTGCGCTAAAGTTCCTTG 59.834 55.000 9.73 0.00 0.00 3.61
2889 10674 0.953960 CCCGTGCGCTAAAGTTCCTT 60.954 55.000 9.73 0.00 0.00 3.36
2890 10675 1.375523 CCCGTGCGCTAAAGTTCCT 60.376 57.895 9.73 0.00 0.00 3.36
2891 10676 1.670083 ACCCGTGCGCTAAAGTTCC 60.670 57.895 9.73 0.00 0.00 3.62
2892 10677 1.226030 ACACCCGTGCGCTAAAGTTC 61.226 55.000 9.73 0.00 0.00 3.01
2893 10678 1.227734 ACACCCGTGCGCTAAAGTT 60.228 52.632 9.73 0.00 0.00 2.66
2894 10679 1.959226 CACACCCGTGCGCTAAAGT 60.959 57.895 9.73 0.00 36.06 2.66
2895 10680 2.860293 CACACCCGTGCGCTAAAG 59.140 61.111 9.73 0.00 36.06 1.85
2907 10692 4.586235 AGCAGCCCCACACACACC 62.586 66.667 0.00 0.00 0.00 4.16
2908 10693 3.289834 CAGCAGCCCCACACACAC 61.290 66.667 0.00 0.00 0.00 3.82
2909 10694 4.584518 CCAGCAGCCCCACACACA 62.585 66.667 0.00 0.00 0.00 3.72
2918 10703 2.459202 AAATTTGCAGCCCAGCAGCC 62.459 55.000 1.36 0.00 46.54 4.85
2919 10704 1.004200 AAATTTGCAGCCCAGCAGC 60.004 52.632 0.00 0.00 46.54 5.25
2920 10705 0.672401 CCAAATTTGCAGCCCAGCAG 60.672 55.000 12.92 0.00 46.54 4.24
2921 10706 1.371932 CCAAATTTGCAGCCCAGCA 59.628 52.632 12.92 0.00 43.99 4.41
2922 10707 1.376295 CCCAAATTTGCAGCCCAGC 60.376 57.895 12.92 0.00 0.00 4.85
2923 10708 1.297364 CCCCAAATTTGCAGCCCAG 59.703 57.895 12.92 0.00 0.00 4.45
2924 10709 2.893092 GCCCCAAATTTGCAGCCCA 61.893 57.895 12.92 0.00 0.00 5.36
2925 10710 2.046023 GCCCCAAATTTGCAGCCC 60.046 61.111 12.92 0.00 0.00 5.19
2926 10711 2.434709 CGCCCCAAATTTGCAGCC 60.435 61.111 19.15 5.93 0.00 4.85
2927 10712 1.737735 GACGCCCCAAATTTGCAGC 60.738 57.895 12.92 15.06 0.00 5.25
2928 10713 1.444212 CGACGCCCCAAATTTGCAG 60.444 57.895 12.92 6.96 0.00 4.41
2929 10714 2.647875 CGACGCCCCAAATTTGCA 59.352 55.556 12.92 0.00 0.00 4.08
2930 10715 1.944234 ATCCGACGCCCCAAATTTGC 61.944 55.000 12.92 0.67 0.00 3.68
2931 10716 0.530288 AATCCGACGCCCCAAATTTG 59.470 50.000 11.40 11.40 0.00 2.32
2932 10717 0.530288 CAATCCGACGCCCCAAATTT 59.470 50.000 0.00 0.00 0.00 1.82
2933 10718 0.610785 ACAATCCGACGCCCCAAATT 60.611 50.000 0.00 0.00 0.00 1.82
2934 10719 1.001393 ACAATCCGACGCCCCAAAT 60.001 52.632 0.00 0.00 0.00 2.32
2935 10720 1.969064 CACAATCCGACGCCCCAAA 60.969 57.895 0.00 0.00 0.00 3.28
2936 10721 2.359354 CACAATCCGACGCCCCAA 60.359 61.111 0.00 0.00 0.00 4.12
2940 10725 3.554692 CTCGCACAATCCGACGCC 61.555 66.667 0.00 0.00 0.00 5.68
2941 10726 4.210304 GCTCGCACAATCCGACGC 62.210 66.667 0.00 0.00 0.00 5.19
2942 10727 3.902063 CGCTCGCACAATCCGACG 61.902 66.667 0.00 0.00 0.00 5.12
2943 10728 3.554692 CCGCTCGCACAATCCGAC 61.555 66.667 0.00 0.00 0.00 4.79
2944 10729 4.812476 CCCGCTCGCACAATCCGA 62.812 66.667 0.00 0.00 0.00 4.55
2946 10731 2.660258 ATACCCCGCTCGCACAATCC 62.660 60.000 0.00 0.00 0.00 3.01
2947 10732 0.814010 AATACCCCGCTCGCACAATC 60.814 55.000 0.00 0.00 0.00 2.67
2948 10733 1.095228 CAATACCCCGCTCGCACAAT 61.095 55.000 0.00 0.00 0.00 2.71
2949 10734 1.743623 CAATACCCCGCTCGCACAA 60.744 57.895 0.00 0.00 0.00 3.33
2950 10735 2.125310 CAATACCCCGCTCGCACA 60.125 61.111 0.00 0.00 0.00 4.57
2951 10736 3.573491 GCAATACCCCGCTCGCAC 61.573 66.667 0.00 0.00 0.00 5.34
2952 10737 3.781307 AGCAATACCCCGCTCGCA 61.781 61.111 0.00 0.00 31.16 5.10
2953 10738 3.272334 CAGCAATACCCCGCTCGC 61.272 66.667 0.00 0.00 35.96 5.03
2954 10739 2.588877 CCAGCAATACCCCGCTCG 60.589 66.667 0.00 0.00 35.96 5.03
2955 10740 1.819632 CACCAGCAATACCCCGCTC 60.820 63.158 0.00 0.00 35.96 5.03
2956 10741 2.272146 CACCAGCAATACCCCGCT 59.728 61.111 0.00 0.00 39.66 5.52
2957 10742 2.828549 CCACCAGCAATACCCCGC 60.829 66.667 0.00 0.00 0.00 6.13
2958 10743 2.124320 CCCACCAGCAATACCCCG 60.124 66.667 0.00 0.00 0.00 5.73
2959 10744 2.278738 CCCCACCAGCAATACCCC 59.721 66.667 0.00 0.00 0.00 4.95
2960 10745 2.442087 GCCCCACCAGCAATACCC 60.442 66.667 0.00 0.00 0.00 3.69
2961 10746 2.442087 GGCCCCACCAGCAATACC 60.442 66.667 0.00 0.00 38.86 2.73
2962 10747 2.828549 CGGCCCCACCAGCAATAC 60.829 66.667 0.00 0.00 39.03 1.89
2963 10748 4.813235 GCGGCCCCACCAGCAATA 62.813 66.667 0.00 0.00 39.03 1.90
2979 10764 1.181098 AATATGGCGCCCAATCCAGC 61.181 55.000 26.77 0.00 36.95 4.85
2980 10765 1.331214 AAATATGGCGCCCAATCCAG 58.669 50.000 26.77 0.00 36.95 3.86
2981 10766 1.786937 AAAATATGGCGCCCAATCCA 58.213 45.000 26.77 3.54 36.95 3.41
2982 10767 2.158971 ACAAAAATATGGCGCCCAATCC 60.159 45.455 26.77 0.00 36.95 3.01
2983 10768 2.865551 CACAAAAATATGGCGCCCAATC 59.134 45.455 26.77 0.00 36.95 2.67
2984 10769 2.903798 CACAAAAATATGGCGCCCAAT 58.096 42.857 26.77 14.81 36.95 3.16
2985 10770 1.674221 GCACAAAAATATGGCGCCCAA 60.674 47.619 26.77 12.83 36.95 4.12
2986 10771 0.108424 GCACAAAAATATGGCGCCCA 60.108 50.000 26.77 12.86 38.19 5.36
2987 10772 0.108424 TGCACAAAAATATGGCGCCC 60.108 50.000 26.77 6.44 0.00 6.13
2988 10773 1.860326 GATGCACAAAAATATGGCGCC 59.140 47.619 22.73 22.73 0.00 6.53
2989 10774 1.860326 GGATGCACAAAAATATGGCGC 59.140 47.619 0.00 0.00 0.00 6.53
2990 10775 2.118683 CGGATGCACAAAAATATGGCG 58.881 47.619 0.00 0.00 0.00 5.69
2991 10776 2.100584 TCCGGATGCACAAAAATATGGC 59.899 45.455 0.00 0.00 0.00 4.40
2992 10777 4.383850 TTCCGGATGCACAAAAATATGG 57.616 40.909 4.15 0.00 0.00 2.74
2993 10778 6.757947 AGATTTTCCGGATGCACAAAAATATG 59.242 34.615 4.15 0.00 31.58 1.78
2994 10779 6.877236 AGATTTTCCGGATGCACAAAAATAT 58.123 32.000 4.15 0.41 31.58 1.28
2995 10780 6.152661 AGAGATTTTCCGGATGCACAAAAATA 59.847 34.615 4.15 0.00 31.58 1.40
2996 10781 5.047092 AGAGATTTTCCGGATGCACAAAAAT 60.047 36.000 4.15 6.33 33.49 1.82
2997 10782 4.280677 AGAGATTTTCCGGATGCACAAAAA 59.719 37.500 4.15 0.42 0.00 1.94
2998 10783 3.826157 AGAGATTTTCCGGATGCACAAAA 59.174 39.130 4.15 1.30 0.00 2.44
2999 10784 3.420893 AGAGATTTTCCGGATGCACAAA 58.579 40.909 4.15 2.17 0.00 2.83
3000 10785 3.009723 GAGAGATTTTCCGGATGCACAA 58.990 45.455 4.15 0.00 0.00 3.33
3001 10786 2.632377 GAGAGATTTTCCGGATGCACA 58.368 47.619 4.15 0.00 0.00 4.57
3002 10787 1.943340 GGAGAGATTTTCCGGATGCAC 59.057 52.381 4.15 0.00 0.00 4.57
3003 10788 2.332063 GGAGAGATTTTCCGGATGCA 57.668 50.000 4.15 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.