Multiple sequence alignment - TraesCS2D01G582300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G582300 chr2D 100.000 6737 0 0 1 6737 643210304 643203568 0.000000e+00 12441
1 TraesCS2D01G582300 chr2D 99.872 781 1 0 4293 5073 614835408 614834628 0.000000e+00 1437
2 TraesCS2D01G582300 chr2D 99.616 781 3 0 4293 5073 262069205 262068425 0.000000e+00 1426
3 TraesCS2D01G582300 chr2D 99.488 781 4 0 4293 5073 293347202 293346422 0.000000e+00 1421
4 TraesCS2D01G582300 chr2A 89.192 5496 337 106 735 6139 768101944 768096615 0.000000e+00 6621
5 TraesCS2D01G582300 chr2A 86.979 576 61 8 6151 6724 766003748 766004311 2.650000e-178 636
6 TraesCS2D01G582300 chr2A 75.227 331 71 10 5188 5514 519843675 519843998 5.440000e-31 147
7 TraesCS2D01G582300 chr2A 88.298 94 8 2 5644 5737 766002637 766002727 7.140000e-20 110
8 TraesCS2D01G582300 chrUn 88.252 1813 115 32 2950 4713 31699612 31697849 0.000000e+00 2078
9 TraesCS2D01G582300 chrUn 95.974 1242 46 3 1628 2869 31700863 31699626 0.000000e+00 2013
10 TraesCS2D01G582300 chrUn 93.206 1045 53 10 4737 5767 31697794 31696754 0.000000e+00 1520
11 TraesCS2D01G582300 chrUn 99.801 503 1 0 4571 5073 373581764 373581262 0.000000e+00 924
12 TraesCS2D01G582300 chrUn 82.401 858 94 24 704 1538 31701824 31701001 0.000000e+00 695
13 TraesCS2D01G582300 chrUn 81.681 595 65 23 5 580 31702666 31702097 7.960000e-124 455
14 TraesCS2D01G582300 chr3D 99.872 782 1 0 4292 5073 41754919 41754138 0.000000e+00 1439
15 TraesCS2D01G582300 chr7D 99.744 781 2 0 4293 5073 131255776 131256556 0.000000e+00 1432
16 TraesCS2D01G582300 chr7D 100.000 193 0 0 4293 4485 121107904 121107712 2.310000e-94 357
17 TraesCS2D01G582300 chr1D 99.616 781 3 0 4293 5073 26546775 26547555 0.000000e+00 1426
18 TraesCS2D01G582300 chr1D 99.824 568 1 0 4506 5073 75830610 75830043 0.000000e+00 1044
19 TraesCS2D01G582300 chr7B 87.864 206 12 5 4371 4563 120918995 120919200 5.260000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G582300 chr2D 643203568 643210304 6736 True 12441.0 12441 100.0000 1 6737 1 chr2D.!!$R4 6736
1 TraesCS2D01G582300 chr2D 614834628 614835408 780 True 1437.0 1437 99.8720 4293 5073 1 chr2D.!!$R3 780
2 TraesCS2D01G582300 chr2D 262068425 262069205 780 True 1426.0 1426 99.6160 4293 5073 1 chr2D.!!$R1 780
3 TraesCS2D01G582300 chr2D 293346422 293347202 780 True 1421.0 1421 99.4880 4293 5073 1 chr2D.!!$R2 780
4 TraesCS2D01G582300 chr2A 768096615 768101944 5329 True 6621.0 6621 89.1920 735 6139 1 chr2A.!!$R1 5404
5 TraesCS2D01G582300 chr2A 766002637 766004311 1674 False 373.0 636 87.6385 5644 6724 2 chr2A.!!$F2 1080
6 TraesCS2D01G582300 chrUn 31696754 31702666 5912 True 1352.2 2078 88.3028 5 5767 5 chrUn.!!$R2 5762
7 TraesCS2D01G582300 chrUn 373581262 373581764 502 True 924.0 924 99.8010 4571 5073 1 chrUn.!!$R1 502
8 TraesCS2D01G582300 chr3D 41754138 41754919 781 True 1439.0 1439 99.8720 4292 5073 1 chr3D.!!$R1 781
9 TraesCS2D01G582300 chr7D 131255776 131256556 780 False 1432.0 1432 99.7440 4293 5073 1 chr7D.!!$F1 780
10 TraesCS2D01G582300 chr1D 26546775 26547555 780 False 1426.0 1426 99.6160 4293 5073 1 chr1D.!!$F1 780
11 TraesCS2D01G582300 chr1D 75830043 75830610 567 True 1044.0 1044 99.8240 4506 5073 1 chr1D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 433 0.043334 TGAGGAGGAGGGGAAAGAGG 59.957 60.0 0.00 0.0 0.00 3.69 F
1280 1508 0.103208 GGAGCTCGAATGTGATCCGT 59.897 55.0 7.83 0.0 34.82 4.69 F
1365 1599 0.034186 TTGCCAAGCTCCGGATGAAT 60.034 50.0 3.57 0.0 0.00 2.57 F
1366 1600 0.464373 TGCCAAGCTCCGGATGAATC 60.464 55.0 3.57 0.0 0.00 2.52 F
1449 1683 0.603569 ACGAGAGAACCGCACATTCT 59.396 50.0 0.00 0.0 39.15 2.40 F
1501 1735 0.709397 TTTGGGGGCATTCATCCAGA 59.291 50.0 0.00 0.0 0.00 3.86 F
1575 1821 0.817654 GAGCAGTAATTTGGGGGCAC 59.182 55.0 0.00 0.0 0.00 5.01 F
2396 2685 0.819259 TTCCACTGCCACAGAAGCAC 60.819 55.0 0.78 0.0 36.01 4.40 F
4103 4427 0.897621 CATTTTGCCCCCTCCAAGAC 59.102 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1596 0.179119 CGTACGGGAGTGGTGGATTC 60.179 60.000 7.57 0.0 46.80 2.52 R
2885 3179 1.621107 CGTGCAAAGACCATCAATGC 58.379 50.000 0.00 0.0 37.52 3.56 R
2891 3185 2.115052 TGCCCGTGCAAAGACCAT 59.885 55.556 0.00 0.0 46.66 3.55 R
3293 3587 3.050619 GAGAAGTTGACCACTGTGTACG 58.949 50.000 7.08 0.0 35.12 3.67 R
3397 3694 7.546358 TGTACAAAATATCTGAAATTGGCAGG 58.454 34.615 0.00 0.0 34.20 4.85 R
3456 3753 4.453478 TCAAATGAGAGCACTTAACAGCAG 59.547 41.667 0.00 0.0 0.00 4.24 R
3570 3867 9.856162 TGGTAAAGAAACCAGAGTTATTTACTT 57.144 29.630 17.29 0.0 44.68 2.24 R
4191 4519 1.073025 TTCAGTGGCACGCCTTGAT 59.927 52.632 12.71 0.0 41.54 2.57 R
5830 6260 0.175760 GATAACACCTCAGGCTGCGA 59.824 55.000 10.34 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.993121 CAAAGTAGTATGGCTGATTTATACAGG 58.007 37.037 0.00 0.00 36.09 4.00
38 40 6.599638 GGCTGATTTATACAGGTCTTTGAACT 59.400 38.462 0.00 0.00 36.09 3.01
43 45 9.827411 GATTTATACAGGTCTTTGAACTTTCAC 57.173 33.333 0.00 0.00 36.83 3.18
45 47 8.918202 TTATACAGGTCTTTGAACTTTCACAT 57.082 30.769 0.00 0.00 36.83 3.21
49 51 7.651808 ACAGGTCTTTGAACTTTCACATAATG 58.348 34.615 0.00 0.00 36.83 1.90
54 56 6.636447 TCTTTGAACTTTCACATAATGCAACG 59.364 34.615 0.00 0.00 36.83 4.10
76 78 4.201812 CGTGATGTTTTAGTACATGGCCTG 60.202 45.833 3.32 2.01 38.80 4.85
92 94 0.884704 CCTGACCACGTTTGACCCTG 60.885 60.000 0.00 0.00 0.00 4.45
94 96 0.179067 TGACCACGTTTGACCCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
105 107 5.183140 CGTTTGACCCTGTCCTAATTGAATT 59.817 40.000 0.00 0.00 0.00 2.17
108 110 6.834168 TGACCCTGTCCTAATTGAATTTTC 57.166 37.500 0.00 0.00 0.00 2.29
111 113 7.122650 TGACCCTGTCCTAATTGAATTTTCATC 59.877 37.037 0.00 0.00 37.00 2.92
112 114 6.095440 ACCCTGTCCTAATTGAATTTTCATCG 59.905 38.462 0.00 0.00 37.00 3.84
117 119 7.393234 TGTCCTAATTGAATTTTCATCGTCCTT 59.607 33.333 0.00 0.00 37.00 3.36
118 120 7.698130 GTCCTAATTGAATTTTCATCGTCCTTG 59.302 37.037 0.00 0.00 37.00 3.61
192 197 0.840288 AGCCACCACACTGATACCCA 60.840 55.000 0.00 0.00 0.00 4.51
201 207 2.840199 CTGATACCCAGGGCAGCTA 58.160 57.895 4.91 0.00 39.23 3.32
207 213 3.854669 CCAGGGCAGCTACTCGGG 61.855 72.222 0.00 0.00 0.00 5.14
219 229 1.960040 TACTCGGGCTCTGCATGTGG 61.960 60.000 0.00 0.00 0.00 4.17
255 265 8.132995 TGAAATAATAGCATGCATGAAGAACTG 58.867 33.333 30.64 2.71 0.00 3.16
262 272 4.142447 GCATGCATGAAGAACTGATCAAGT 60.142 41.667 30.64 0.00 42.60 3.16
277 287 3.749665 TCAAGTTTTTCCATGGGCAAG 57.250 42.857 13.02 0.00 0.00 4.01
282 292 1.531739 TTTTCCATGGGCAAGCGACC 61.532 55.000 13.02 0.00 42.99 4.79
290 300 1.373748 GGCAAGCGACCGACAGTTA 60.374 57.895 0.00 0.00 0.00 2.24
293 303 0.242825 CAAGCGACCGACAGTTAGGA 59.757 55.000 3.28 0.00 0.00 2.94
299 309 0.896226 ACCGACAGTTAGGAGCCTTC 59.104 55.000 0.00 0.00 0.00 3.46
350 360 4.556233 CTCCGCCATCGATATGAAGTTTA 58.444 43.478 0.00 0.00 38.10 2.01
354 364 4.386049 CGCCATCGATATGAAGTTTAGTCC 59.614 45.833 0.00 0.00 38.10 3.85
360 370 5.810587 TCGATATGAAGTTTAGTCCTGCAAC 59.189 40.000 0.00 0.00 0.00 4.17
366 376 5.526111 TGAAGTTTAGTCCTGCAACACTAAC 59.474 40.000 14.08 10.57 35.32 2.34
368 378 3.738830 TTAGTCCTGCAACACTAACGT 57.261 42.857 11.46 0.00 31.48 3.99
369 379 2.150397 AGTCCTGCAACACTAACGTC 57.850 50.000 0.00 0.00 0.00 4.34
380 390 0.398696 ACTAACGTCCCATTGGTGCA 59.601 50.000 1.20 0.00 0.00 4.57
388 398 2.423538 GTCCCATTGGTGCAACATAGAC 59.576 50.000 4.62 6.74 39.98 2.59
389 399 2.040947 TCCCATTGGTGCAACATAGACA 59.959 45.455 4.62 0.00 39.98 3.41
400 410 4.201960 TGCAACATAGACAAGCAACGAAAA 60.202 37.500 0.00 0.00 31.42 2.29
401 411 4.917415 GCAACATAGACAAGCAACGAAAAT 59.083 37.500 0.00 0.00 0.00 1.82
402 412 5.164158 GCAACATAGACAAGCAACGAAAATG 60.164 40.000 0.00 0.00 0.00 2.32
403 413 5.940192 ACATAGACAAGCAACGAAAATGA 57.060 34.783 0.00 0.00 0.00 2.57
404 414 6.500684 ACATAGACAAGCAACGAAAATGAT 57.499 33.333 0.00 0.00 0.00 2.45
405 415 6.317088 ACATAGACAAGCAACGAAAATGATG 58.683 36.000 0.00 0.00 0.00 3.07
408 418 4.083110 AGACAAGCAACGAAAATGATGAGG 60.083 41.667 0.00 0.00 0.00 3.86
411 421 3.012518 AGCAACGAAAATGATGAGGAGG 58.987 45.455 0.00 0.00 0.00 4.30
412 422 3.009723 GCAACGAAAATGATGAGGAGGA 58.990 45.455 0.00 0.00 0.00 3.71
416 426 2.486191 CGAAAATGATGAGGAGGAGGGG 60.486 54.545 0.00 0.00 0.00 4.79
417 427 2.594536 AAATGATGAGGAGGAGGGGA 57.405 50.000 0.00 0.00 0.00 4.81
418 428 2.594536 AATGATGAGGAGGAGGGGAA 57.405 50.000 0.00 0.00 0.00 3.97
419 429 2.594536 ATGATGAGGAGGAGGGGAAA 57.405 50.000 0.00 0.00 0.00 3.13
420 430 1.885049 TGATGAGGAGGAGGGGAAAG 58.115 55.000 0.00 0.00 0.00 2.62
421 431 1.366082 TGATGAGGAGGAGGGGAAAGA 59.634 52.381 0.00 0.00 0.00 2.52
422 432 2.046292 GATGAGGAGGAGGGGAAAGAG 58.954 57.143 0.00 0.00 0.00 2.85
423 433 0.043334 TGAGGAGGAGGGGAAAGAGG 59.957 60.000 0.00 0.00 0.00 3.69
424 434 0.340208 GAGGAGGAGGGGAAAGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
425 435 0.341609 AGGAGGAGGGGAAAGAGGAG 59.658 60.000 0.00 0.00 0.00 3.69
426 436 0.692756 GGAGGAGGGGAAAGAGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
427 437 0.340208 GAGGAGGGGAAAGAGGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
428 438 1.031112 AGGAGGGGAAAGAGGAGGAT 58.969 55.000 0.00 0.00 0.00 3.24
429 439 1.061735 AGGAGGGGAAAGAGGAGGATC 60.062 57.143 0.00 0.00 0.00 3.36
462 472 2.431683 GGCTCACCACTGGCAAGA 59.568 61.111 0.00 0.00 35.26 3.02
463 473 1.968540 GGCTCACCACTGGCAAGAC 60.969 63.158 0.00 0.00 35.26 3.01
465 475 1.367471 CTCACCACTGGCAAGACGA 59.633 57.895 0.00 0.00 0.00 4.20
466 476 0.946221 CTCACCACTGGCAAGACGAC 60.946 60.000 0.00 0.00 0.00 4.34
467 477 2.029073 ACCACTGGCAAGACGACG 59.971 61.111 0.00 0.00 0.00 5.12
472 482 2.050714 TGGCAAGACGACGACGAC 60.051 61.111 15.32 8.08 42.66 4.34
473 483 2.050714 GGCAAGACGACGACGACA 60.051 61.111 15.32 0.00 42.66 4.35
477 487 1.405461 CAAGACGACGACGACAACAT 58.595 50.000 15.32 0.00 42.66 2.71
484 494 2.655577 CGACGACGACAACATCAACAAC 60.656 50.000 0.00 0.00 42.66 3.32
492 502 2.096819 ACAACATCAACAACGTGGTCAC 59.903 45.455 0.00 0.00 0.00 3.67
515 525 3.772560 CGCGCGCACACACACATA 61.773 61.111 32.61 0.00 0.00 2.29
516 526 2.096406 GCGCGCACACACACATAG 59.904 61.111 29.10 0.00 0.00 2.23
517 527 2.667318 GCGCGCACACACACATAGT 61.667 57.895 29.10 0.00 0.00 2.12
526 536 2.370519 ACACACACATAGTACCTTGGCA 59.629 45.455 0.00 0.00 0.00 4.92
529 539 3.835978 ACACACATAGTACCTTGGCACTA 59.164 43.478 2.57 2.57 0.00 2.74
530 540 4.285003 ACACACATAGTACCTTGGCACTAA 59.715 41.667 4.09 0.00 31.35 2.24
537 547 0.466543 ACCTTGGCACTAACGTGTGA 59.533 50.000 10.00 0.00 43.16 3.58
580 598 4.753610 GCATGCTCTAATAGTGCTTGATCA 59.246 41.667 24.66 0.00 40.24 2.92
581 599 5.237996 GCATGCTCTAATAGTGCTTGATCAA 59.762 40.000 24.66 8.12 40.24 2.57
582 600 6.238566 GCATGCTCTAATAGTGCTTGATCAAA 60.239 38.462 24.66 0.00 40.24 2.69
583 601 6.915544 TGCTCTAATAGTGCTTGATCAAAG 57.084 37.500 9.88 5.19 35.86 2.77
584 602 5.819379 TGCTCTAATAGTGCTTGATCAAAGG 59.181 40.000 9.88 0.00 35.86 3.11
585 603 5.238214 GCTCTAATAGTGCTTGATCAAAGGG 59.762 44.000 9.88 2.41 36.30 3.95
586 604 5.684704 TCTAATAGTGCTTGATCAAAGGGG 58.315 41.667 9.88 0.00 36.30 4.79
588 606 0.613012 AGTGCTTGATCAAAGGGGGC 60.613 55.000 9.88 9.45 36.30 5.80
589 607 0.613012 GTGCTTGATCAAAGGGGGCT 60.613 55.000 9.88 0.00 36.30 5.19
595 685 0.697854 GATCAAAGGGGGCTAGGGGA 60.698 60.000 0.00 0.00 0.00 4.81
606 696 1.984288 GCTAGGGGACGAAATGGGCT 61.984 60.000 0.00 0.00 0.00 5.19
611 701 2.106683 GGACGAAATGGGCTGACCG 61.107 63.158 0.00 0.00 44.64 4.79
612 702 2.046314 ACGAAATGGGCTGACCGG 60.046 61.111 0.00 0.00 44.64 5.28
614 704 2.106683 CGAAATGGGCTGACCGGTC 61.107 63.158 28.17 28.17 44.64 4.79
634 724 1.003355 CTGCGACAATGGAGGTGGT 60.003 57.895 0.00 0.00 0.00 4.16
641 731 4.740822 ATGGAGGTGGTTGCGCCC 62.741 66.667 4.18 0.00 36.04 6.13
650 740 4.344865 GTTGCGCCCTGGGGAGAA 62.345 66.667 16.03 0.00 37.24 2.87
671 761 2.281484 GCGACCAAAGGGCTCACA 60.281 61.111 0.00 0.00 37.90 3.58
672 762 1.675641 GCGACCAAAGGGCTCACAT 60.676 57.895 0.00 0.00 37.90 3.21
676 766 2.354704 CGACCAAAGGGCTCACATTCTA 60.355 50.000 0.00 0.00 37.90 2.10
677 767 3.686016 GACCAAAGGGCTCACATTCTAA 58.314 45.455 0.00 0.00 37.90 2.10
678 768 4.079253 GACCAAAGGGCTCACATTCTAAA 58.921 43.478 0.00 0.00 37.90 1.85
679 769 4.677182 ACCAAAGGGCTCACATTCTAAAT 58.323 39.130 0.00 0.00 37.90 1.40
680 770 5.826643 ACCAAAGGGCTCACATTCTAAATA 58.173 37.500 0.00 0.00 37.90 1.40
681 771 5.888161 ACCAAAGGGCTCACATTCTAAATAG 59.112 40.000 0.00 0.00 37.90 1.73
682 772 5.888161 CCAAAGGGCTCACATTCTAAATAGT 59.112 40.000 0.00 0.00 0.00 2.12
683 773 7.054124 CCAAAGGGCTCACATTCTAAATAGTA 58.946 38.462 0.00 0.00 0.00 1.82
749 924 5.471556 AATGACCAGCATTTGAACATGAA 57.528 34.783 0.00 0.00 44.68 2.57
753 928 5.181811 TGACCAGCATTTGAACATGAACTAG 59.818 40.000 0.00 0.00 0.00 2.57
754 929 4.082571 ACCAGCATTTGAACATGAACTAGC 60.083 41.667 0.00 0.00 0.00 3.42
755 930 4.082625 CCAGCATTTGAACATGAACTAGCA 60.083 41.667 0.00 0.00 0.00 3.49
795 971 7.870509 CTTGATTGAAGGACCATATCTGAAA 57.129 36.000 0.00 0.00 0.00 2.69
796 972 7.630242 TTGATTGAAGGACCATATCTGAAAC 57.370 36.000 0.00 0.00 0.00 2.78
797 973 6.962182 TGATTGAAGGACCATATCTGAAACT 58.038 36.000 0.00 0.00 0.00 2.66
854 1037 2.679287 AGGAGGACCGACCCGAAC 60.679 66.667 7.06 0.00 41.83 3.95
903 1108 3.253230 CCCAAAGAAAATCATTGTCGCC 58.747 45.455 0.00 0.00 0.00 5.54
973 1191 4.631740 TCCGCACTCCACTCCCCA 62.632 66.667 0.00 0.00 0.00 4.96
974 1192 4.394712 CCGCACTCCACTCCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
975 1193 3.314331 CGCACTCCACTCCCCACT 61.314 66.667 0.00 0.00 0.00 4.00
976 1194 2.665603 GCACTCCACTCCCCACTC 59.334 66.667 0.00 0.00 0.00 3.51
977 1195 2.217038 GCACTCCACTCCCCACTCA 61.217 63.158 0.00 0.00 0.00 3.41
978 1196 1.674057 CACTCCACTCCCCACTCAC 59.326 63.158 0.00 0.00 0.00 3.51
979 1197 0.833834 CACTCCACTCCCCACTCACT 60.834 60.000 0.00 0.00 0.00 3.41
980 1198 0.543174 ACTCCACTCCCCACTCACTC 60.543 60.000 0.00 0.00 0.00 3.51
981 1199 1.229209 TCCACTCCCCACTCACTCC 60.229 63.158 0.00 0.00 0.00 3.85
982 1200 2.294078 CCACTCCCCACTCACTCCC 61.294 68.421 0.00 0.00 0.00 4.30
1089 1310 3.528370 CCGTACTGGCTCTCCCCG 61.528 72.222 0.00 0.00 0.00 5.73
1091 1312 2.050350 CGTACTGGCTCTCCCCGAA 61.050 63.158 0.00 0.00 0.00 4.30
1121 1342 4.052229 CGCCGTCGGAGGTCAGTT 62.052 66.667 17.49 0.00 0.00 3.16
1122 1343 2.126031 GCCGTCGGAGGTCAGTTC 60.126 66.667 17.49 0.00 0.00 3.01
1123 1344 2.178521 CCGTCGGAGGTCAGTTCG 59.821 66.667 4.91 0.00 0.00 3.95
1124 1345 2.623915 CCGTCGGAGGTCAGTTCGT 61.624 63.158 4.91 0.00 0.00 3.85
1125 1346 1.285023 CGTCGGAGGTCAGTTCGTT 59.715 57.895 0.00 0.00 0.00 3.85
1131 1352 1.066114 GAGGTCAGTTCGTTCGCTCG 61.066 60.000 0.00 0.00 0.00 5.03
1132 1353 2.717809 GGTCAGTTCGTTCGCTCGC 61.718 63.158 0.00 0.00 0.00 5.03
1137 1358 4.400109 TTCGTTCGCTCGCTCGCT 62.400 61.111 0.00 0.00 0.00 4.93
1152 1373 1.078848 CGCTCACTTCCTTCCCCTG 60.079 63.158 0.00 0.00 0.00 4.45
1153 1374 1.831652 CGCTCACTTCCTTCCCCTGT 61.832 60.000 0.00 0.00 0.00 4.00
1169 1397 1.303888 TGTCCGGTCCTAGCTCGTT 60.304 57.895 0.00 0.00 0.00 3.85
1199 1427 1.743321 GCTCCTGGAGTGATCCCTCG 61.743 65.000 23.92 0.00 31.98 4.63
1228 1456 2.355115 GGTTTCCTGGTGCCCGAT 59.645 61.111 0.00 0.00 0.00 4.18
1240 1468 1.144057 GCCCGATGGATCAGAACGT 59.856 57.895 0.00 0.00 0.00 3.99
1280 1508 0.103208 GGAGCTCGAATGTGATCCGT 59.897 55.000 7.83 0.00 34.82 4.69
1308 1536 2.125552 TCCGTGATTCCAGCAGCG 60.126 61.111 0.00 0.00 0.00 5.18
1309 1537 3.869272 CCGTGATTCCAGCAGCGC 61.869 66.667 0.00 0.00 0.00 5.92
1360 1594 1.003355 CTTCTTGCCAAGCTCCGGA 60.003 57.895 2.93 2.93 0.00 5.14
1361 1595 0.393537 CTTCTTGCCAAGCTCCGGAT 60.394 55.000 3.57 0.00 0.00 4.18
1362 1596 0.677731 TTCTTGCCAAGCTCCGGATG 60.678 55.000 3.57 0.00 0.00 3.51
1363 1597 1.078214 CTTGCCAAGCTCCGGATGA 60.078 57.895 3.57 0.00 0.00 2.92
1364 1598 0.677731 CTTGCCAAGCTCCGGATGAA 60.678 55.000 3.57 0.00 0.00 2.57
1365 1599 0.034186 TTGCCAAGCTCCGGATGAAT 60.034 50.000 3.57 0.00 0.00 2.57
1366 1600 0.464373 TGCCAAGCTCCGGATGAATC 60.464 55.000 3.57 0.00 0.00 2.52
1367 1601 1.169034 GCCAAGCTCCGGATGAATCC 61.169 60.000 3.57 0.00 43.65 3.01
1413 1647 2.084546 GATAAATCCGCCACCTATGCC 58.915 52.381 0.00 0.00 0.00 4.40
1426 1660 3.312421 CACCTATGCCTTTCCATTGTACG 59.688 47.826 0.00 0.00 0.00 3.67
1427 1661 3.199071 ACCTATGCCTTTCCATTGTACGA 59.801 43.478 0.00 0.00 0.00 3.43
1428 1662 3.809832 CCTATGCCTTTCCATTGTACGAG 59.190 47.826 0.00 0.00 0.00 4.18
1432 1666 2.601763 GCCTTTCCATTGTACGAGTACG 59.398 50.000 8.62 0.00 45.75 3.67
1449 1683 0.603569 ACGAGAGAACCGCACATTCT 59.396 50.000 0.00 0.00 39.15 2.40
1501 1735 0.709397 TTTGGGGGCATTCATCCAGA 59.291 50.000 0.00 0.00 0.00 3.86
1502 1736 0.935942 TTGGGGGCATTCATCCAGAT 59.064 50.000 0.00 0.00 0.00 2.90
1503 1737 0.935942 TGGGGGCATTCATCCAGATT 59.064 50.000 0.00 0.00 0.00 2.40
1504 1738 1.133388 TGGGGGCATTCATCCAGATTC 60.133 52.381 0.00 0.00 0.00 2.52
1505 1739 1.625511 GGGGCATTCATCCAGATTCC 58.374 55.000 0.00 0.00 0.00 3.01
1506 1740 1.133388 GGGGCATTCATCCAGATTCCA 60.133 52.381 0.00 0.00 0.00 3.53
1507 1741 2.236766 GGGCATTCATCCAGATTCCAG 58.763 52.381 0.00 0.00 0.00 3.86
1520 1758 2.094854 AGATTCCAGTACCGTTCGTCAC 60.095 50.000 0.00 0.00 0.00 3.67
1538 1776 3.864003 GTCACTACATTTTCCGTAGCTCC 59.136 47.826 0.00 0.00 40.03 4.70
1540 1778 4.951715 TCACTACATTTTCCGTAGCTCCTA 59.048 41.667 0.00 0.00 40.03 2.94
1541 1779 5.597182 TCACTACATTTTCCGTAGCTCCTAT 59.403 40.000 0.00 0.00 40.03 2.57
1566 1812 5.035443 GTCGATTCAGTACGAGCAGTAATT 58.965 41.667 0.00 0.00 39.16 1.40
1575 1821 0.817654 GAGCAGTAATTTGGGGGCAC 59.182 55.000 0.00 0.00 0.00 5.01
1577 1823 0.817654 GCAGTAATTTGGGGGCACTC 59.182 55.000 0.00 0.00 0.00 3.51
1588 1850 1.272480 GGGGGCACTCAGTACCATTTT 60.272 52.381 0.00 0.00 0.00 1.82
1593 1855 4.335594 GGGCACTCAGTACCATTTTATCAC 59.664 45.833 0.00 0.00 0.00 3.06
1595 1857 6.346096 GGCACTCAGTACCATTTTATCACTA 58.654 40.000 0.00 0.00 0.00 2.74
1600 1862 9.959721 ACTCAGTACCATTTTATCACTACATTT 57.040 29.630 0.00 0.00 0.00 2.32
1642 1929 4.490606 TCCCCAGGATGCCCGCTA 62.491 66.667 0.00 0.00 37.58 4.26
2396 2685 0.819259 TTCCACTGCCACAGAAGCAC 60.819 55.000 0.78 0.00 36.01 4.40
2593 2882 2.959357 GCGCAGAAGGTCAGTGCAC 61.959 63.158 9.40 9.40 38.92 4.57
2595 2884 1.835483 CGCAGAAGGTCAGTGCACAC 61.835 60.000 21.04 9.34 37.01 3.82
2614 2903 7.381408 GTGCACACGCTTCAGTTATAGATATAA 59.619 37.037 13.17 0.00 39.64 0.98
2615 2904 7.595130 TGCACACGCTTCAGTTATAGATATAAG 59.405 37.037 0.00 0.00 39.64 1.73
2631 2920 6.889198 AGATATAAGTAACACTGTGGTGCAT 58.111 36.000 16.18 6.79 46.57 3.96
2637 2926 5.500234 AGTAACACTGTGGTGCATATGAAT 58.500 37.500 16.18 0.00 46.57 2.57
2683 2972 4.494484 AGATTCTTTTTGTATTTGCCCGC 58.506 39.130 0.00 0.00 0.00 6.13
2694 2983 2.884997 TTTGCCCGCTCAGTGTGTGT 62.885 55.000 5.14 0.00 0.00 3.72
2869 3163 8.833976 GCTAAAATGAGCAGTCTCTTATTTTC 57.166 34.615 13.22 3.77 42.36 2.29
2880 3174 8.384365 GCAGTCTCTTATTTTCTACTTTAGTGC 58.616 37.037 0.00 0.00 0.00 4.40
2885 3179 9.994432 CTCTTATTTTCTACTTTAGTGCATTGG 57.006 33.333 0.00 0.00 0.00 3.16
2903 3197 1.273048 TGGCATTGATGGTCTTTGCAC 59.727 47.619 0.00 0.00 35.04 4.57
2920 3214 1.675483 GCACGGGCATGAATATGACAA 59.325 47.619 3.77 0.00 44.58 3.18
2926 3220 5.036737 CGGGCATGAATATGACAAGAAAAC 58.963 41.667 0.00 0.00 44.58 2.43
2930 3224 6.350445 GGCATGAATATGACAAGAAAACTGGT 60.350 38.462 0.00 0.00 42.21 4.00
2931 3225 7.148086 GGCATGAATATGACAAGAAAACTGGTA 60.148 37.037 0.00 0.00 42.21 3.25
2932 3226 7.698130 GCATGAATATGACAAGAAAACTGGTAC 59.302 37.037 0.00 0.00 36.36 3.34
2933 3227 8.729756 CATGAATATGACAAGAAAACTGGTACA 58.270 33.333 0.00 0.00 36.36 2.90
2951 3245 7.931015 TGGTACAGATAATCCTACCATTCTT 57.069 36.000 0.00 0.00 34.88 2.52
2952 3246 7.963532 TGGTACAGATAATCCTACCATTCTTC 58.036 38.462 0.00 0.00 34.88 2.87
2953 3247 7.789831 TGGTACAGATAATCCTACCATTCTTCT 59.210 37.037 0.00 0.00 34.88 2.85
2954 3248 9.310449 GGTACAGATAATCCTACCATTCTTCTA 57.690 37.037 0.00 0.00 30.67 2.10
2962 3256 8.738645 AATCCTACCATTCTTCTATGTTTGAC 57.261 34.615 0.00 0.00 0.00 3.18
2985 3279 2.271944 AACCACTCTGTTTACCCTGC 57.728 50.000 0.00 0.00 0.00 4.85
3042 3336 4.095782 AGCTACAAAGAAACAACGAAAGCA 59.904 37.500 0.00 0.00 0.00 3.91
3093 3387 2.239907 GGGAGGCTTTGGAACAGTCTAT 59.760 50.000 0.00 0.00 42.39 1.98
3264 3558 6.512297 TGAAAGAAAAGAAAGGTAATGGTGC 58.488 36.000 0.00 0.00 0.00 5.01
3265 3559 6.097554 TGAAAGAAAAGAAAGGTAATGGTGCA 59.902 34.615 0.00 0.00 0.00 4.57
3271 3565 9.087424 GAAAAGAAAGGTAATGGTGCATTATTC 57.913 33.333 0.00 0.00 38.37 1.75
3277 3571 2.975410 ATGGTGCATTATTCGCATCG 57.025 45.000 0.00 0.00 43.67 3.84
3293 3587 6.448053 TCGCATCGTAATTTGCTATACTTC 57.552 37.500 0.00 0.00 36.71 3.01
3299 3596 7.669438 TCGTAATTTGCTATACTTCGTACAC 57.331 36.000 0.00 0.00 0.00 2.90
3302 3599 7.219535 CGTAATTTGCTATACTTCGTACACAGT 59.780 37.037 0.00 0.00 0.00 3.55
3303 3600 6.887376 ATTTGCTATACTTCGTACACAGTG 57.113 37.500 0.00 0.00 0.00 3.66
3312 3609 3.088194 TCGTACACAGTGGTCAACTTC 57.912 47.619 5.31 0.00 36.83 3.01
3322 3619 7.039011 ACACAGTGGTCAACTTCTCATCTTATA 60.039 37.037 5.31 0.00 36.83 0.98
3397 3694 3.133721 AGGATCACCTGCACTGTAAGATC 59.866 47.826 0.00 0.00 45.92 2.75
3416 3713 7.909485 AAGATCCTGCCAATTTCAGATATTT 57.091 32.000 6.14 0.00 33.54 1.40
3570 3867 2.009681 TGCTCTGGTAGGTTCACTGA 57.990 50.000 0.00 0.00 0.00 3.41
3588 3885 8.837389 GTTCACTGAAGTAAATAACTCTGGTTT 58.163 33.333 0.00 0.00 37.50 3.27
3695 3992 9.630098 AAGTTGAATTACAAATACTGCAGATTG 57.370 29.630 23.35 22.14 40.36 2.67
3705 4002 1.822990 ACTGCAGATTGCTTTCCCATG 59.177 47.619 23.35 0.00 45.31 3.66
3759 4056 4.058817 ACGTCATTCCTCAGTTTTCTCAC 58.941 43.478 0.00 0.00 0.00 3.51
3819 4116 7.228507 TGCACCTACTAAAACCTGCATAATATG 59.771 37.037 0.00 0.00 29.85 1.78
3860 4157 4.041691 GCTGGAATGCTAGGAATTAGGGTA 59.958 45.833 0.00 0.00 0.00 3.69
3861 4158 5.552178 CTGGAATGCTAGGAATTAGGGTAC 58.448 45.833 0.00 0.00 0.00 3.34
3862 4159 4.972568 TGGAATGCTAGGAATTAGGGTACA 59.027 41.667 0.00 0.00 0.00 2.90
3863 4160 5.071788 TGGAATGCTAGGAATTAGGGTACAG 59.928 44.000 0.00 0.00 0.00 2.74
3864 4161 5.307196 GGAATGCTAGGAATTAGGGTACAGA 59.693 44.000 0.00 0.00 0.00 3.41
3865 4162 6.013293 GGAATGCTAGGAATTAGGGTACAGAT 60.013 42.308 0.00 0.00 0.00 2.90
3866 4163 7.180408 GGAATGCTAGGAATTAGGGTACAGATA 59.820 40.741 0.00 0.00 0.00 1.98
3867 4164 7.726033 ATGCTAGGAATTAGGGTACAGATAG 57.274 40.000 0.00 0.00 0.00 2.08
3868 4165 6.017192 TGCTAGGAATTAGGGTACAGATAGG 58.983 44.000 0.00 0.00 0.00 2.57
3869 4166 6.017830 GCTAGGAATTAGGGTACAGATAGGT 58.982 44.000 0.00 0.00 0.00 3.08
3870 4167 6.071278 GCTAGGAATTAGGGTACAGATAGGTG 60.071 46.154 0.00 0.00 0.00 4.00
3871 4168 6.039415 AGGAATTAGGGTACAGATAGGTGA 57.961 41.667 0.00 0.00 0.00 4.02
3872 4169 6.078664 AGGAATTAGGGTACAGATAGGTGAG 58.921 44.000 0.00 0.00 0.00 3.51
3873 4170 5.839606 GGAATTAGGGTACAGATAGGTGAGT 59.160 44.000 0.00 0.00 0.00 3.41
3874 4171 6.326843 GGAATTAGGGTACAGATAGGTGAGTT 59.673 42.308 0.00 0.00 0.00 3.01
3875 4172 7.147532 GGAATTAGGGTACAGATAGGTGAGTTT 60.148 40.741 0.00 0.00 0.00 2.66
3876 4173 6.786967 TTAGGGTACAGATAGGTGAGTTTC 57.213 41.667 0.00 0.00 0.00 2.78
3877 4174 4.949121 AGGGTACAGATAGGTGAGTTTCT 58.051 43.478 0.00 0.00 0.00 2.52
3878 4175 4.957327 AGGGTACAGATAGGTGAGTTTCTC 59.043 45.833 0.00 0.00 0.00 2.87
3879 4176 4.710375 GGGTACAGATAGGTGAGTTTCTCA 59.290 45.833 0.00 0.00 38.25 3.27
3880 4177 5.364157 GGGTACAGATAGGTGAGTTTCTCAT 59.636 44.000 2.80 0.00 42.73 2.90
3881 4178 6.127026 GGGTACAGATAGGTGAGTTTCTCATT 60.127 42.308 2.80 0.00 42.73 2.57
3882 4179 6.758886 GGTACAGATAGGTGAGTTTCTCATTG 59.241 42.308 2.80 0.01 42.73 2.82
3883 4180 6.365970 ACAGATAGGTGAGTTTCTCATTGT 57.634 37.500 2.80 0.50 42.73 2.71
4044 4365 7.776969 ACACCTATCAATTTGCATGTAGAGATT 59.223 33.333 0.00 0.00 0.00 2.40
4072 4396 8.396390 GCCTGATATCATGCAGTATCTTATTTG 58.604 37.037 23.28 0.00 37.43 2.32
4103 4427 0.897621 CATTTTGCCCCCTCCAAGAC 59.102 55.000 0.00 0.00 0.00 3.01
4108 4432 1.225704 GCCCCCTCCAAGACAGATG 59.774 63.158 0.00 0.00 0.00 2.90
4110 4434 1.225704 CCCCTCCAAGACAGATGGC 59.774 63.158 0.00 0.00 37.88 4.40
4131 4459 2.930826 CCTGTCTGGGTGTACAGTTT 57.069 50.000 0.00 0.00 41.25 2.66
4155 4483 6.585695 ATGTATCGGTCCAACTATTATCGT 57.414 37.500 0.00 0.00 0.00 3.73
4191 4519 2.617840 TTTTGGCCCCCGGTTTATTA 57.382 45.000 0.00 0.00 0.00 0.98
4205 4533 3.488553 GGTTTATTATCAAGGCGTGCCAC 60.489 47.826 14.29 0.00 38.92 5.01
4284 4612 8.618240 ATTATTGGTACATCGATAGGGGATAA 57.382 34.615 0.00 0.24 39.30 1.75
5081 5486 4.661222 TCCAGGTGTGAATTCAGCAATAA 58.339 39.130 8.80 0.00 38.15 1.40
5082 5487 5.263599 TCCAGGTGTGAATTCAGCAATAAT 58.736 37.500 8.80 0.00 38.15 1.28
5117 5522 6.821665 ACGAAACTATGTAACATGCAGGTTAT 59.178 34.615 24.98 14.78 35.83 1.89
5167 5572 8.798859 ATATACAATATTGTTGCTCATCTCCC 57.201 34.615 25.31 0.00 42.35 4.30
5275 5680 4.996434 GCGTGGTGCTGCTGGAGT 62.996 66.667 0.00 0.00 41.73 3.85
5649 6060 2.125106 GACATGCGGTCCCTCCAC 60.125 66.667 0.00 0.00 40.83 4.02
5810 6240 0.996462 TTCGATTTGCGTGGTCGATC 59.004 50.000 4.54 0.00 43.03 3.69
5811 6241 1.137459 TCGATTTGCGTGGTCGATCG 61.137 55.000 9.36 9.36 39.22 3.69
5812 6242 1.636340 GATTTGCGTGGTCGATCGG 59.364 57.895 16.41 0.00 39.71 4.18
5813 6243 2.361427 GATTTGCGTGGTCGATCGGC 62.361 60.000 16.41 14.41 39.71 5.54
5890 6320 1.879380 CAGATTGGTTTTCTGGACGCA 59.121 47.619 0.00 0.00 37.53 5.24
5891 6321 2.489329 CAGATTGGTTTTCTGGACGCAT 59.511 45.455 0.00 0.00 37.53 4.73
5892 6322 2.489329 AGATTGGTTTTCTGGACGCATG 59.511 45.455 0.00 0.00 0.00 4.06
5893 6323 0.958091 TTGGTTTTCTGGACGCATGG 59.042 50.000 0.00 0.00 0.00 3.66
5897 6327 0.179004 TTTTCTGGACGCATGGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
5914 6344 4.956700 TGGTGGTTGGTTCATACAAAGAAA 59.043 37.500 0.00 0.00 0.00 2.52
5920 6350 5.666969 TGGTTCATACAAAGAAAGACACG 57.333 39.130 0.00 0.00 0.00 4.49
5926 6356 6.943981 TCATACAAAGAAAGACACGTTCTTG 58.056 36.000 11.77 9.28 44.41 3.02
5981 6446 2.860136 GCAGTTTTGTTTTCCTGTGAGC 59.140 45.455 0.00 0.00 0.00 4.26
5989 6454 0.107410 TTTCCTGTGAGCGTGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
5990 6455 0.753867 TTCCTGTGAGCGTGTTGGTA 59.246 50.000 0.00 0.00 0.00 3.25
5991 6456 0.317160 TCCTGTGAGCGTGTTGGTAG 59.683 55.000 0.00 0.00 0.00 3.18
5992 6457 0.317160 CCTGTGAGCGTGTTGGTAGA 59.683 55.000 0.00 0.00 0.00 2.59
5993 6458 1.270094 CCTGTGAGCGTGTTGGTAGAA 60.270 52.381 0.00 0.00 0.00 2.10
5994 6459 2.612972 CCTGTGAGCGTGTTGGTAGAAT 60.613 50.000 0.00 0.00 0.00 2.40
5995 6460 3.368013 CCTGTGAGCGTGTTGGTAGAATA 60.368 47.826 0.00 0.00 0.00 1.75
5996 6461 3.581755 TGTGAGCGTGTTGGTAGAATAC 58.418 45.455 0.00 0.00 42.04 1.89
5997 6462 3.257375 TGTGAGCGTGTTGGTAGAATACT 59.743 43.478 0.00 0.00 42.51 2.12
5998 6463 4.243270 GTGAGCGTGTTGGTAGAATACTT 58.757 43.478 0.00 0.00 42.51 2.24
5999 6464 5.047872 TGTGAGCGTGTTGGTAGAATACTTA 60.048 40.000 0.00 0.00 42.51 2.24
6000 6465 5.287992 GTGAGCGTGTTGGTAGAATACTTAC 59.712 44.000 0.00 0.00 42.51 2.34
6001 6466 5.184479 TGAGCGTGTTGGTAGAATACTTACT 59.816 40.000 0.00 0.00 42.51 2.24
6002 6467 5.648572 AGCGTGTTGGTAGAATACTTACTC 58.351 41.667 0.00 0.00 42.51 2.59
6005 6470 5.803967 CGTGTTGGTAGAATACTTACTCCAC 59.196 44.000 0.00 0.00 42.51 4.02
6016 6481 8.594550 AGAATACTTACTCCACACAACATAACT 58.405 33.333 0.00 0.00 0.00 2.24
6077 6542 3.977134 TTTTGCAATATGGGCACACAT 57.023 38.095 0.00 0.00 41.75 3.21
6095 6560 6.571588 CACACATCGTAACTTGAAAATTTGC 58.428 36.000 0.00 0.00 0.00 3.68
6108 6573 1.238439 AATTTGCAGTCGACCCACAG 58.762 50.000 13.01 0.00 0.00 3.66
6155 7277 5.133941 TGCCTACACAAATAGTTGAAACCA 58.866 37.500 10.35 0.00 38.20 3.67
6158 7280 6.542852 CCTACACAAATAGTTGAAACCATCG 58.457 40.000 10.35 0.00 38.20 3.84
6163 7285 1.816074 TAGTTGAAACCATCGGCACC 58.184 50.000 0.00 0.00 0.00 5.01
6164 7286 1.209127 GTTGAAACCATCGGCACCG 59.791 57.895 1.73 1.73 41.35 4.94
6169 7291 2.808181 AAACCATCGGCACCGGTACC 62.808 60.000 14.49 14.49 40.25 3.34
6170 7292 3.776781 CCATCGGCACCGGTACCA 61.777 66.667 23.80 11.16 40.25 3.25
6188 7310 2.159043 ACCACCGATGTAATGCTCTCTG 60.159 50.000 0.00 0.00 0.00 3.35
6189 7311 2.159043 CCACCGATGTAATGCTCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
6199 7321 3.708403 ATGCTCTCTGTGGTTCATCAA 57.292 42.857 0.00 0.00 0.00 2.57
6202 7324 2.681848 GCTCTCTGTGGTTCATCAATGG 59.318 50.000 0.00 0.00 0.00 3.16
6210 7332 4.074970 GTGGTTCATCAATGGTCTGTCTT 58.925 43.478 0.00 0.00 0.00 3.01
6211 7333 4.154918 GTGGTTCATCAATGGTCTGTCTTC 59.845 45.833 0.00 0.00 0.00 2.87
6212 7334 4.202451 TGGTTCATCAATGGTCTGTCTTCA 60.202 41.667 0.00 0.00 0.00 3.02
6213 7335 4.154918 GGTTCATCAATGGTCTGTCTTCAC 59.845 45.833 0.00 0.00 0.00 3.18
6214 7336 4.622260 TCATCAATGGTCTGTCTTCACA 57.378 40.909 0.00 0.00 0.00 3.58
6216 7338 4.040829 TCATCAATGGTCTGTCTTCACACT 59.959 41.667 0.00 0.00 0.00 3.55
6217 7339 3.995199 TCAATGGTCTGTCTTCACACTC 58.005 45.455 0.00 0.00 0.00 3.51
6218 7340 3.643320 TCAATGGTCTGTCTTCACACTCT 59.357 43.478 0.00 0.00 0.00 3.24
6219 7341 3.951775 ATGGTCTGTCTTCACACTCTC 57.048 47.619 0.00 0.00 0.00 3.20
6220 7342 2.950781 TGGTCTGTCTTCACACTCTCT 58.049 47.619 0.00 0.00 0.00 3.10
6227 7349 0.791238 CTTCACACTCTCTCGTCGCG 60.791 60.000 0.00 0.00 0.00 5.87
6245 7367 1.808411 CGCCCTTAAGTTTCAGCTGA 58.192 50.000 13.74 13.74 0.00 4.26
6266 7388 0.955919 CCTCAAAGTCAACGGGGCTC 60.956 60.000 0.00 0.00 0.00 4.70
6340 7462 3.777465 AGCAGCAACAACATCATCATC 57.223 42.857 0.00 0.00 0.00 2.92
6341 7463 2.096980 AGCAGCAACAACATCATCATCG 59.903 45.455 0.00 0.00 0.00 3.84
6342 7464 2.159476 GCAGCAACAACATCATCATCGT 60.159 45.455 0.00 0.00 0.00 3.73
6346 7468 4.694982 AGCAACAACATCATCATCGTTACA 59.305 37.500 0.00 0.00 0.00 2.41
6356 7478 7.224753 ACATCATCATCGTTACACATCCTTAAC 59.775 37.037 0.00 0.00 0.00 2.01
6361 7483 2.347452 CGTTACACATCCTTAACCGCAG 59.653 50.000 0.00 0.00 0.00 5.18
6363 7485 2.094762 ACACATCCTTAACCGCAGAC 57.905 50.000 0.00 0.00 0.00 3.51
6376 7498 1.798368 CGCAGACGCTAAACCGATCG 61.798 60.000 8.51 8.51 35.30 3.69
6380 7502 1.198608 GACGCTAAACCGATCGACCG 61.199 60.000 18.66 11.39 0.00 4.79
6384 7506 1.001597 GCTAAACCGATCGACCGATCT 60.002 52.381 24.22 12.13 46.36 2.75
6391 7513 2.604855 CCGATCGACCGATCTACAAAGG 60.605 54.545 24.22 15.53 46.36 3.11
6403 7525 1.064803 CTACAAAGGCACACGCAACAA 59.935 47.619 0.00 0.00 41.24 2.83
6408 7530 2.530497 GGCACACGCAACAACGAGA 61.530 57.895 0.00 0.00 41.24 4.04
6413 7535 1.202098 ACACGCAACAACGAGAAAACC 60.202 47.619 0.00 0.00 36.70 3.27
6416 7538 2.108700 CGCAACAACGAGAAAACCAAG 58.891 47.619 0.00 0.00 34.06 3.61
6417 7539 2.459934 GCAACAACGAGAAAACCAAGG 58.540 47.619 0.00 0.00 0.00 3.61
6418 7540 2.098443 GCAACAACGAGAAAACCAAGGA 59.902 45.455 0.00 0.00 0.00 3.36
6420 7542 3.553828 ACAACGAGAAAACCAAGGAGA 57.446 42.857 0.00 0.00 0.00 3.71
6421 7543 3.881220 ACAACGAGAAAACCAAGGAGAA 58.119 40.909 0.00 0.00 0.00 2.87
6422 7544 3.626217 ACAACGAGAAAACCAAGGAGAAC 59.374 43.478 0.00 0.00 0.00 3.01
6426 7548 4.095932 ACGAGAAAACCAAGGAGAACAAAC 59.904 41.667 0.00 0.00 0.00 2.93
6427 7549 4.095782 CGAGAAAACCAAGGAGAACAAACA 59.904 41.667 0.00 0.00 0.00 2.83
6428 7550 5.582550 GAGAAAACCAAGGAGAACAAACAG 58.417 41.667 0.00 0.00 0.00 3.16
6429 7551 4.402474 AGAAAACCAAGGAGAACAAACAGG 59.598 41.667 0.00 0.00 0.00 4.00
6430 7552 3.662759 AACCAAGGAGAACAAACAGGA 57.337 42.857 0.00 0.00 0.00 3.86
6431 7553 3.884037 ACCAAGGAGAACAAACAGGAT 57.116 42.857 0.00 0.00 0.00 3.24
6432 7554 3.490348 ACCAAGGAGAACAAACAGGATG 58.510 45.455 0.00 0.00 46.00 3.51
6447 7569 3.699038 ACAGGATGAGAACAGAGTAGAGC 59.301 47.826 0.00 0.00 39.69 4.09
6463 7585 1.502163 GAGCGGGCACATACATCTGC 61.502 60.000 0.00 0.00 0.00 4.26
6479 7601 3.758172 GCGGTGAGCTTTTGGGAA 58.242 55.556 0.00 0.00 44.04 3.97
6488 7610 2.037641 GAGCTTTTGGGAATTGTGCCTT 59.962 45.455 0.00 0.00 35.89 4.35
6565 7687 4.157120 ATACACGTGGAGCGGCCC 62.157 66.667 21.57 0.00 46.52 5.80
6586 7708 2.117156 GCAGGCCGCACATGATCTT 61.117 57.895 13.61 0.00 41.79 2.40
6613 7735 4.527509 TCTTGAAAGAGTAGACCTGCAG 57.472 45.455 6.78 6.78 0.00 4.41
6626 7748 2.530151 TGCAGGCTGACCCCTTCT 60.530 61.111 20.86 0.00 36.11 2.85
6632 7754 1.216710 GCTGACCCCTTCTGTCTCG 59.783 63.158 0.00 0.00 33.83 4.04
6639 7761 0.745845 CCCTTCTGTCTCGGCATTGG 60.746 60.000 0.00 0.00 0.00 3.16
6676 7798 2.076628 GCGTGCAATGCGTGAAGTG 61.077 57.895 0.00 0.00 40.15 3.16
6700 7822 0.393537 GGGCTCAATGTAGCTGCACT 60.394 55.000 6.66 0.00 42.37 4.40
6701 7823 1.012841 GGCTCAATGTAGCTGCACTC 58.987 55.000 6.66 0.00 42.37 3.51
6702 7824 1.676916 GGCTCAATGTAGCTGCACTCA 60.677 52.381 6.66 0.00 42.37 3.41
6705 7827 3.069289 CTCAATGTAGCTGCACTCACAA 58.931 45.455 6.66 0.00 0.00 3.33
6718 7840 5.771469 TGCACTCACAATTAACCAAATCAG 58.229 37.500 0.00 0.00 0.00 2.90
6721 7843 6.514870 GCACTCACAATTAACCAAATCAGTCA 60.515 38.462 0.00 0.00 0.00 3.41
6723 7845 8.084073 CACTCACAATTAACCAAATCAGTCAAT 58.916 33.333 0.00 0.00 0.00 2.57
6724 7846 8.299570 ACTCACAATTAACCAAATCAGTCAATC 58.700 33.333 0.00 0.00 0.00 2.67
6725 7847 7.601856 TCACAATTAACCAAATCAGTCAATCC 58.398 34.615 0.00 0.00 0.00 3.01
6726 7848 7.232330 TCACAATTAACCAAATCAGTCAATCCA 59.768 33.333 0.00 0.00 0.00 3.41
6727 7849 7.543172 CACAATTAACCAAATCAGTCAATCCAG 59.457 37.037 0.00 0.00 0.00 3.86
6728 7850 7.233348 ACAATTAACCAAATCAGTCAATCCAGT 59.767 33.333 0.00 0.00 0.00 4.00
6729 7851 7.781324 ATTAACCAAATCAGTCAATCCAGTT 57.219 32.000 0.00 0.00 0.00 3.16
6730 7852 8.877864 ATTAACCAAATCAGTCAATCCAGTTA 57.122 30.769 0.00 0.00 0.00 2.24
6731 7853 8.698973 TTAACCAAATCAGTCAATCCAGTTAA 57.301 30.769 0.00 0.00 0.00 2.01
6732 7854 7.595819 AACCAAATCAGTCAATCCAGTTAAA 57.404 32.000 0.00 0.00 0.00 1.52
6733 7855 7.219484 ACCAAATCAGTCAATCCAGTTAAAG 57.781 36.000 0.00 0.00 0.00 1.85
6734 7856 6.095377 CCAAATCAGTCAATCCAGTTAAAGC 58.905 40.000 0.00 0.00 0.00 3.51
6735 7857 5.551760 AATCAGTCAATCCAGTTAAAGCG 57.448 39.130 0.00 0.00 0.00 4.68
6736 7858 3.334691 TCAGTCAATCCAGTTAAAGCGG 58.665 45.455 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.764363 CTGTATAAATCAGCCATACTACTTTGA 57.236 33.333 0.00 0.00 0.00 2.69
2 3 8.993121 CCTGTATAAATCAGCCATACTACTTTG 58.007 37.037 0.00 0.00 0.00 2.77
9 10 7.715249 TCAAAGACCTGTATAAATCAGCCATAC 59.285 37.037 0.00 0.00 0.00 2.39
28 29 7.357532 CGTTGCATTATGTGAAAGTTCAAAGAC 60.358 37.037 0.00 0.00 39.21 3.01
38 40 5.369685 ACATCACGTTGCATTATGTGAAA 57.630 34.783 15.51 0.00 44.64 2.69
43 45 7.960195 TGTACTAAAACATCACGTTGCATTATG 59.040 33.333 0.00 0.00 38.07 1.90
45 47 7.422878 TGTACTAAAACATCACGTTGCATTA 57.577 32.000 0.00 0.00 38.07 1.90
49 51 5.086058 CCATGTACTAAAACATCACGTTGC 58.914 41.667 0.00 0.00 38.01 4.17
54 56 4.941263 TCAGGCCATGTACTAAAACATCAC 59.059 41.667 5.01 0.00 38.01 3.06
76 78 0.883370 GGACAGGGTCAAACGTGGTC 60.883 60.000 0.00 0.00 33.68 4.02
92 94 7.321745 AGGACGATGAAAATTCAATTAGGAC 57.678 36.000 0.00 0.00 41.13 3.85
94 96 7.538575 ACAAGGACGATGAAAATTCAATTAGG 58.461 34.615 0.00 0.00 41.13 2.69
105 107 4.582701 ATGCAAAACAAGGACGATGAAA 57.417 36.364 0.00 0.00 0.00 2.69
108 110 6.949578 AATTTATGCAAAACAAGGACGATG 57.050 33.333 0.00 0.00 0.00 3.84
144 146 9.954763 GCCACTGCTTCAAACATCTTATGGATG 62.955 44.444 8.37 8.37 44.62 3.51
177 182 1.562672 GCCCTGGGTATCAGTGTGGT 61.563 60.000 15.56 0.00 41.83 4.16
181 186 1.153086 GCTGCCCTGGGTATCAGTG 60.153 63.158 15.56 0.00 41.83 3.66
182 187 0.031111 TAGCTGCCCTGGGTATCAGT 60.031 55.000 15.56 6.83 41.83 3.41
183 188 0.394565 GTAGCTGCCCTGGGTATCAG 59.605 60.000 15.56 14.00 43.00 2.90
184 189 0.031111 AGTAGCTGCCCTGGGTATCA 60.031 55.000 15.56 2.77 0.00 2.15
192 197 4.787280 AGCCCGAGTAGCTGCCCT 62.787 66.667 0.00 0.00 39.69 5.19
193 198 4.228567 GAGCCCGAGTAGCTGCCC 62.229 72.222 0.00 0.00 41.75 5.36
201 207 2.267006 CACATGCAGAGCCCGAGT 59.733 61.111 0.00 0.00 0.00 4.18
207 213 2.158842 AGGAATAGACCACATGCAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
219 229 8.786898 TGCATGCTATTATTTCAAGGAATAGAC 58.213 33.333 20.33 0.00 35.90 2.59
239 249 4.142447 ACTTGATCAGTTCTTCATGCATGC 60.142 41.667 22.25 11.82 27.32 4.06
255 265 3.959535 TGCCCATGGAAAAACTTGATC 57.040 42.857 15.22 0.00 0.00 2.92
262 272 0.316841 GTCGCTTGCCCATGGAAAAA 59.683 50.000 15.22 3.35 0.00 1.94
266 276 4.776322 CGGTCGCTTGCCCATGGA 62.776 66.667 15.22 0.00 0.00 3.41
277 287 1.516603 GCTCCTAACTGTCGGTCGC 60.517 63.158 0.00 0.00 0.00 5.19
282 292 0.526662 ACGAAGGCTCCTAACTGTCG 59.473 55.000 5.66 5.66 0.00 4.35
285 295 3.802948 ACATACGAAGGCTCCTAACTG 57.197 47.619 0.00 0.00 0.00 3.16
286 296 3.679083 GCAACATACGAAGGCTCCTAACT 60.679 47.826 0.00 0.00 0.00 2.24
290 300 0.107654 GGCAACATACGAAGGCTCCT 60.108 55.000 0.00 0.00 0.00 3.69
293 303 1.449601 CGGGCAACATACGAAGGCT 60.450 57.895 0.00 0.00 39.74 4.58
299 309 0.384309 TAGAGCTCGGGCAACATACG 59.616 55.000 11.40 0.00 41.70 3.06
328 338 2.732412 ACTTCATATCGATGGCGGAG 57.268 50.000 8.54 2.79 38.28 4.63
331 341 4.386049 GGACTAAACTTCATATCGATGGCG 59.614 45.833 8.54 0.00 39.35 5.69
342 352 4.150897 AGTGTTGCAGGACTAAACTTCA 57.849 40.909 0.00 0.00 0.00 3.02
350 360 1.270147 GGACGTTAGTGTTGCAGGACT 60.270 52.381 5.18 5.18 0.00 3.85
354 364 1.808411 ATGGGACGTTAGTGTTGCAG 58.192 50.000 0.00 0.00 0.00 4.41
360 370 0.802494 GCACCAATGGGACGTTAGTG 59.198 55.000 3.55 0.00 38.05 2.74
366 376 1.401552 CTATGTTGCACCAATGGGACG 59.598 52.381 3.55 0.00 38.05 4.79
368 378 2.040947 TGTCTATGTTGCACCAATGGGA 59.959 45.455 3.55 0.00 38.05 4.37
369 379 2.445427 TGTCTATGTTGCACCAATGGG 58.555 47.619 3.55 0.00 41.29 4.00
380 390 6.312399 TCATTTTCGTTGCTTGTCTATGTT 57.688 33.333 0.00 0.00 0.00 2.71
388 398 4.409570 CTCCTCATCATTTTCGTTGCTTG 58.590 43.478 0.00 0.00 0.00 4.01
389 399 3.441572 CCTCCTCATCATTTTCGTTGCTT 59.558 43.478 0.00 0.00 0.00 3.91
400 410 2.021639 TCTTTCCCCTCCTCCTCATCAT 60.022 50.000 0.00 0.00 0.00 2.45
401 411 1.366082 TCTTTCCCCTCCTCCTCATCA 59.634 52.381 0.00 0.00 0.00 3.07
402 412 2.046292 CTCTTTCCCCTCCTCCTCATC 58.954 57.143 0.00 0.00 0.00 2.92
403 413 1.344906 CCTCTTTCCCCTCCTCCTCAT 60.345 57.143 0.00 0.00 0.00 2.90
404 414 0.043334 CCTCTTTCCCCTCCTCCTCA 59.957 60.000 0.00 0.00 0.00 3.86
405 415 0.340208 TCCTCTTTCCCCTCCTCCTC 59.660 60.000 0.00 0.00 0.00 3.71
408 418 0.340208 TCCTCCTCTTTCCCCTCCTC 59.660 60.000 0.00 0.00 0.00 3.71
411 421 2.182516 TGATCCTCCTCTTTCCCCTC 57.817 55.000 0.00 0.00 0.00 4.30
412 422 2.046447 TCTTGATCCTCCTCTTTCCCCT 59.954 50.000 0.00 0.00 0.00 4.79
416 426 4.522114 CCCTTTCTTGATCCTCCTCTTTC 58.478 47.826 0.00 0.00 0.00 2.62
417 427 3.268072 CCCCTTTCTTGATCCTCCTCTTT 59.732 47.826 0.00 0.00 0.00 2.52
418 428 2.849318 CCCCTTTCTTGATCCTCCTCTT 59.151 50.000 0.00 0.00 0.00 2.85
419 429 2.486716 CCCCTTTCTTGATCCTCCTCT 58.513 52.381 0.00 0.00 0.00 3.69
420 430 1.492599 CCCCCTTTCTTGATCCTCCTC 59.507 57.143 0.00 0.00 0.00 3.71
421 431 1.601248 CCCCCTTTCTTGATCCTCCT 58.399 55.000 0.00 0.00 0.00 3.69
444 454 2.674380 CTTGCCAGTGGTGAGCCC 60.674 66.667 11.74 0.00 0.00 5.19
462 472 1.126079 GTTGATGTTGTCGTCGTCGT 58.874 50.000 1.33 0.00 38.33 4.34
463 473 1.125270 TGTTGATGTTGTCGTCGTCG 58.875 50.000 0.00 0.00 38.55 5.12
465 475 1.256895 CGTTGTTGATGTTGTCGTCGT 59.743 47.619 0.00 0.00 32.69 4.34
466 476 1.256895 ACGTTGTTGATGTTGTCGTCG 59.743 47.619 0.00 0.00 32.69 5.12
467 477 2.598907 CCACGTTGTTGATGTTGTCGTC 60.599 50.000 0.00 0.00 0.00 4.20
472 482 2.540769 GGTGACCACGTTGTTGATGTTG 60.541 50.000 0.00 0.00 0.00 3.33
473 483 1.673920 GGTGACCACGTTGTTGATGTT 59.326 47.619 0.00 0.00 0.00 2.71
477 487 1.521906 CCGGTGACCACGTTGTTGA 60.522 57.895 1.11 0.00 0.00 3.18
498 508 3.684809 CTATGTGTGTGTGCGCGCG 62.685 63.158 28.44 28.44 38.36 6.86
501 511 0.719465 GGTACTATGTGTGTGTGCGC 59.281 55.000 0.00 0.00 0.00 6.09
506 516 2.742053 GTGCCAAGGTACTATGTGTGTG 59.258 50.000 0.00 0.00 38.49 3.82
509 519 4.619863 CGTTAGTGCCAAGGTACTATGTGT 60.620 45.833 16.17 0.00 41.53 3.72
510 520 3.863424 CGTTAGTGCCAAGGTACTATGTG 59.137 47.826 16.17 7.10 41.53 3.21
511 521 3.512724 ACGTTAGTGCCAAGGTACTATGT 59.487 43.478 16.17 14.52 41.53 2.29
512 522 3.863424 CACGTTAGTGCCAAGGTACTATG 59.137 47.826 16.17 14.00 41.53 2.23
513 523 4.119442 CACGTTAGTGCCAAGGTACTAT 57.881 45.455 16.17 1.26 41.53 2.12
514 524 3.581024 CACGTTAGTGCCAAGGTACTA 57.419 47.619 12.26 12.26 41.94 1.82
515 525 2.450609 CACGTTAGTGCCAAGGTACT 57.549 50.000 14.25 14.25 41.94 2.73
526 536 0.318445 GTCAGGCGTCACACGTTAGT 60.318 55.000 0.00 0.00 44.73 2.24
529 539 2.657296 CGTCAGGCGTCACACGTT 60.657 61.111 2.85 0.00 44.73 3.99
530 540 3.588906 TCGTCAGGCGTCACACGT 61.589 61.111 10.10 0.00 44.73 4.49
558 576 6.856135 TTGATCAAGCACTATTAGAGCATG 57.144 37.500 14.32 12.48 34.13 4.06
559 577 6.485984 CCTTTGATCAAGCACTATTAGAGCAT 59.514 38.462 14.32 0.88 34.13 3.79
580 598 2.691252 CGTCCCCTAGCCCCCTTT 60.691 66.667 0.00 0.00 0.00 3.11
581 599 2.776053 TTTCGTCCCCTAGCCCCCTT 62.776 60.000 0.00 0.00 0.00 3.95
582 600 2.562973 ATTTCGTCCCCTAGCCCCCT 62.563 60.000 0.00 0.00 0.00 4.79
583 601 2.076803 ATTTCGTCCCCTAGCCCCC 61.077 63.158 0.00 0.00 0.00 5.40
584 602 1.148498 CATTTCGTCCCCTAGCCCC 59.852 63.158 0.00 0.00 0.00 5.80
585 603 1.148498 CCATTTCGTCCCCTAGCCC 59.852 63.158 0.00 0.00 0.00 5.19
586 604 1.148498 CCCATTTCGTCCCCTAGCC 59.852 63.158 0.00 0.00 0.00 3.93
588 606 0.179045 CAGCCCATTTCGTCCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
589 607 0.619255 TCAGCCCATTTCGTCCCCTA 60.619 55.000 0.00 0.00 0.00 3.53
595 685 2.046314 CCGGTCAGCCCATTTCGT 60.046 61.111 0.00 0.00 0.00 3.85
614 704 1.300971 CCACCTCCATTGTCGCAGTG 61.301 60.000 0.00 0.00 0.00 3.66
619 709 1.875963 GCAACCACCTCCATTGTCG 59.124 57.895 0.00 0.00 0.00 4.35
634 724 4.033776 CTTCTCCCCAGGGCGCAA 62.034 66.667 10.83 0.00 34.68 4.85
641 731 3.787001 GTCGCCCCTTCTCCCCAG 61.787 72.222 0.00 0.00 0.00 4.45
646 736 1.377333 CCTTTGGTCGCCCCTTCTC 60.377 63.158 0.00 0.00 0.00 2.87
647 737 2.757077 CCTTTGGTCGCCCCTTCT 59.243 61.111 0.00 0.00 0.00 2.85
648 738 2.361230 CCCTTTGGTCGCCCCTTC 60.361 66.667 0.00 0.00 0.00 3.46
652 742 4.344865 TGAGCCCTTTGGTCGCCC 62.345 66.667 0.00 0.00 44.62 6.13
655 745 0.804989 GAATGTGAGCCCTTTGGTCG 59.195 55.000 0.00 0.00 44.62 4.79
660 750 9.700831 ATTTACTATTTAGAATGTGAGCCCTTT 57.299 29.630 0.00 0.00 0.00 3.11
694 784 6.818233 TGGTACCAAAATTAAAACAGAACCC 58.182 36.000 13.60 0.00 0.00 4.11
695 785 7.929245 ACATGGTACCAAAATTAAAACAGAACC 59.071 33.333 20.76 0.00 0.00 3.62
696 786 8.880878 ACATGGTACCAAAATTAAAACAGAAC 57.119 30.769 20.76 0.00 0.00 3.01
697 787 8.696374 TGACATGGTACCAAAATTAAAACAGAA 58.304 29.630 20.76 0.00 0.00 3.02
749 924 5.580022 AGGGGAAACATGTTTATTGCTAGT 58.420 37.500 23.33 0.00 32.11 2.57
753 928 5.146010 TCAAGGGGAAACATGTTTATTGC 57.854 39.130 23.33 11.05 32.11 3.56
754 929 7.385267 TCAATCAAGGGGAAACATGTTTATTG 58.615 34.615 23.33 23.09 32.11 1.90
755 930 7.552050 TCAATCAAGGGGAAACATGTTTATT 57.448 32.000 23.33 14.17 32.11 1.40
817 995 2.752358 CTTGCTGCCCACTCCTCA 59.248 61.111 0.00 0.00 0.00 3.86
818 996 2.749441 GCTTGCTGCCCACTCCTC 60.749 66.667 0.00 0.00 35.15 3.71
837 1020 2.679287 GTTCGGGTCGGTCCTCCT 60.679 66.667 0.00 0.00 36.25 3.69
851 1034 1.152333 ACCAAAAGCCCTGGGGTTC 60.152 57.895 28.91 5.64 43.04 3.62
854 1037 1.908299 GTGACCAAAAGCCCTGGGG 60.908 63.158 16.03 4.75 38.36 4.96
858 1041 2.115266 CCCGTGACCAAAAGCCCT 59.885 61.111 0.00 0.00 0.00 5.19
861 1044 2.494530 TTGGCCCGTGACCAAAAGC 61.495 57.895 0.00 0.00 44.11 3.51
887 1089 2.025887 AGGAGGGCGACAATGATTTTCT 60.026 45.455 0.00 0.00 0.00 2.52
888 1090 2.356069 GAGGAGGGCGACAATGATTTTC 59.644 50.000 0.00 0.00 0.00 2.29
903 1108 2.368439 CTGAGTGAGAGAGTGAGGAGG 58.632 57.143 0.00 0.00 0.00 4.30
973 1191 0.543174 GAGTGGAGTGGGGAGTGAGT 60.543 60.000 0.00 0.00 0.00 3.41
974 1192 1.261238 GGAGTGGAGTGGGGAGTGAG 61.261 65.000 0.00 0.00 0.00 3.51
975 1193 1.229209 GGAGTGGAGTGGGGAGTGA 60.229 63.158 0.00 0.00 0.00 3.41
976 1194 2.294078 GGGAGTGGAGTGGGGAGTG 61.294 68.421 0.00 0.00 0.00 3.51
977 1195 2.122954 GGGAGTGGAGTGGGGAGT 59.877 66.667 0.00 0.00 0.00 3.85
978 1196 3.077556 CGGGAGTGGAGTGGGGAG 61.078 72.222 0.00 0.00 0.00 4.30
981 1199 2.690653 TTTTGCGGGAGTGGAGTGGG 62.691 60.000 0.00 0.00 0.00 4.61
982 1200 0.609131 ATTTTGCGGGAGTGGAGTGG 60.609 55.000 0.00 0.00 0.00 4.00
1104 1325 3.966026 GAACTGACCTCCGACGGCG 62.966 68.421 9.66 1.94 37.24 6.46
1121 1342 4.813526 GAGCGAGCGAGCGAACGA 62.814 66.667 13.69 0.00 43.00 3.85
1123 1344 3.537297 GTGAGCGAGCGAGCGAAC 61.537 66.667 1.41 0.86 43.00 3.95
1124 1345 3.268965 AAGTGAGCGAGCGAGCGAA 62.269 57.895 1.41 0.00 43.00 4.70
1125 1346 3.669036 GAAGTGAGCGAGCGAGCGA 62.669 63.158 1.41 0.00 43.00 4.93
1131 1352 1.448717 GGGAAGGAAGTGAGCGAGC 60.449 63.158 0.00 0.00 0.00 5.03
1132 1353 1.219393 GGGGAAGGAAGTGAGCGAG 59.781 63.158 0.00 0.00 0.00 5.03
1137 1358 1.192146 CGGACAGGGGAAGGAAGTGA 61.192 60.000 0.00 0.00 0.00 3.41
1152 1373 1.432657 GAACGAGCTAGGACCGGAC 59.567 63.158 9.46 0.00 0.00 4.79
1153 1374 2.110967 CGAACGAGCTAGGACCGGA 61.111 63.158 9.46 0.00 0.00 5.14
1228 1456 2.107041 AACCGCCACGTTCTGATCCA 62.107 55.000 0.00 0.00 0.00 3.41
1240 1468 1.377987 GTGCCTGGATTAACCGCCA 60.378 57.895 0.00 0.00 42.61 5.69
1291 1519 2.125552 CGCTGCTGGAATCACGGA 60.126 61.111 0.00 0.00 0.00 4.69
1360 1594 1.485066 GTACGGGAGTGGTGGATTCAT 59.515 52.381 0.00 0.00 46.80 2.57
1361 1595 0.899720 GTACGGGAGTGGTGGATTCA 59.100 55.000 0.00 0.00 46.80 2.57
1362 1596 0.179119 CGTACGGGAGTGGTGGATTC 60.179 60.000 7.57 0.00 46.80 2.52
1363 1597 1.895238 CGTACGGGAGTGGTGGATT 59.105 57.895 7.57 0.00 46.80 3.01
1364 1598 2.718073 GCGTACGGGAGTGGTGGAT 61.718 63.158 18.39 0.00 46.80 3.41
1365 1599 3.376078 GCGTACGGGAGTGGTGGA 61.376 66.667 18.39 0.00 46.80 4.02
1366 1600 4.789075 CGCGTACGGGAGTGGTGG 62.789 72.222 26.40 0.00 46.80 4.61
1396 1630 4.579127 GGCATAGGTGGCGGATTT 57.421 55.556 0.00 0.00 41.35 2.17
1413 1647 4.978186 TCTCGTACTCGTACAATGGAAAG 58.022 43.478 7.86 0.00 35.87 2.62
1426 1660 0.520404 TGTGCGGTTCTCTCGTACTC 59.480 55.000 6.32 0.00 42.21 2.59
1427 1661 1.174783 ATGTGCGGTTCTCTCGTACT 58.825 50.000 6.32 0.00 42.21 2.73
1428 1662 1.918609 GAATGTGCGGTTCTCTCGTAC 59.081 52.381 0.00 0.00 42.09 3.67
1432 1666 2.166664 AGGTAGAATGTGCGGTTCTCTC 59.833 50.000 1.88 0.00 37.18 3.20
1449 1683 2.123597 AGCCGGCCATACGAGGTA 60.124 61.111 26.15 0.00 35.47 3.08
1495 1729 2.100916 CGAACGGTACTGGAATCTGGAT 59.899 50.000 6.65 0.00 0.00 3.41
1501 1735 1.891150 AGTGACGAACGGTACTGGAAT 59.109 47.619 6.65 0.00 0.00 3.01
1502 1736 1.321474 AGTGACGAACGGTACTGGAA 58.679 50.000 6.65 0.00 0.00 3.53
1503 1737 1.806542 GTAGTGACGAACGGTACTGGA 59.193 52.381 6.65 0.00 0.00 3.86
1504 1738 1.536766 TGTAGTGACGAACGGTACTGG 59.463 52.381 6.65 0.00 0.00 4.00
1505 1739 2.975410 TGTAGTGACGAACGGTACTG 57.025 50.000 0.00 0.00 0.00 2.74
1506 1740 4.510038 AAATGTAGTGACGAACGGTACT 57.490 40.909 0.00 9.57 0.00 2.73
1507 1741 4.090498 GGAAAATGTAGTGACGAACGGTAC 59.910 45.833 0.00 0.00 0.00 3.34
1520 1758 6.281405 ACAATAGGAGCTACGGAAAATGTAG 58.719 40.000 0.00 0.00 41.75 2.74
1538 1776 4.598062 TGCTCGTACTGAATCGACAATAG 58.402 43.478 0.00 0.00 32.65 1.73
1540 1778 3.119459 ACTGCTCGTACTGAATCGACAAT 60.119 43.478 0.00 0.00 32.65 2.71
1541 1779 2.228103 ACTGCTCGTACTGAATCGACAA 59.772 45.455 0.00 0.00 32.65 3.18
1566 1812 0.844661 ATGGTACTGAGTGCCCCCAA 60.845 55.000 17.19 0.00 37.51 4.12
1600 1862 8.418597 ACAGTGAAGATCCTAGTTAGTAACAA 57.581 34.615 15.28 0.00 0.00 2.83
1601 1863 7.122353 GGACAGTGAAGATCCTAGTTAGTAACA 59.878 40.741 15.28 1.10 0.00 2.41
1611 1873 2.940514 TGGGGACAGTGAAGATCCTA 57.059 50.000 0.00 0.00 35.01 2.94
1642 1929 0.407139 AGTTGGCCCAGCTGAAATCT 59.593 50.000 17.39 2.87 0.00 2.40
1990 2277 0.326264 AGGTCTTGCAGGTGATGTCC 59.674 55.000 0.00 0.00 0.00 4.02
2192 2479 3.403038 AGTAACTTAGTGCAGCAACTGG 58.597 45.455 0.00 0.00 31.21 4.00
2396 2685 2.420022 CGAAATGTGGTAAGGCTTCTGG 59.580 50.000 1.30 0.00 0.00 3.86
2614 2903 4.551702 TCATATGCACCACAGTGTTACT 57.448 40.909 0.00 0.00 46.35 2.24
2615 2904 5.123820 ACATTCATATGCACCACAGTGTTAC 59.876 40.000 0.00 0.00 46.35 2.50
2637 2926 9.201989 TCTCAATCCTAGCTTAAAGAATCTACA 57.798 33.333 0.00 0.00 0.00 2.74
2658 2947 6.155827 CGGGCAAATACAAAAAGAATCTCAA 58.844 36.000 0.00 0.00 0.00 3.02
2678 2967 3.044305 GACACACACTGAGCGGGC 61.044 66.667 0.00 0.00 0.00 6.13
2683 2972 2.671888 GCATGATGAGACACACACTGAG 59.328 50.000 0.00 0.00 0.00 3.35
2783 3073 6.200808 TGCATGAATGAGTTGTTATTATGCG 58.799 36.000 0.00 0.00 40.75 4.73
2880 3174 2.933906 GCAAAGACCATCAATGCCAATG 59.066 45.455 0.00 0.00 0.00 2.82
2885 3179 1.621107 CGTGCAAAGACCATCAATGC 58.379 50.000 0.00 0.00 37.52 3.56
2891 3185 2.115052 TGCCCGTGCAAAGACCAT 59.885 55.556 0.00 0.00 46.66 3.55
2903 3197 4.898829 TTTCTTGTCATATTCATGCCCG 57.101 40.909 0.00 0.00 31.73 6.13
2918 3212 9.099454 GTAGGATTATCTGTACCAGTTTTCTTG 57.901 37.037 0.00 0.00 32.61 3.02
2920 3214 7.402071 TGGTAGGATTATCTGTACCAGTTTTCT 59.598 37.037 17.21 0.00 40.00 2.52
2926 3220 7.546250 AGAATGGTAGGATTATCTGTACCAG 57.454 40.000 22.10 0.00 46.22 4.00
2931 3225 9.386122 ACATAGAAGAATGGTAGGATTATCTGT 57.614 33.333 0.00 0.00 0.00 3.41
2936 3230 9.832445 GTCAAACATAGAAGAATGGTAGGATTA 57.168 33.333 0.00 0.00 0.00 1.75
2937 3231 8.552296 AGTCAAACATAGAAGAATGGTAGGATT 58.448 33.333 0.00 0.00 0.00 3.01
2938 3232 7.989741 CAGTCAAACATAGAAGAATGGTAGGAT 59.010 37.037 0.00 0.00 0.00 3.24
2939 3233 7.180229 TCAGTCAAACATAGAAGAATGGTAGGA 59.820 37.037 0.00 0.00 0.00 2.94
2940 3234 7.331026 TCAGTCAAACATAGAAGAATGGTAGG 58.669 38.462 0.00 0.00 0.00 3.18
2941 3235 8.777865 TTCAGTCAAACATAGAAGAATGGTAG 57.222 34.615 0.00 0.00 0.00 3.18
2943 3237 7.040409 GGTTTCAGTCAAACATAGAAGAATGGT 60.040 37.037 0.00 0.00 45.66 3.55
2944 3238 7.040478 TGGTTTCAGTCAAACATAGAAGAATGG 60.040 37.037 0.00 0.00 45.66 3.16
2945 3239 7.805071 GTGGTTTCAGTCAAACATAGAAGAATG 59.195 37.037 0.00 0.00 45.66 2.67
2946 3240 7.721399 AGTGGTTTCAGTCAAACATAGAAGAAT 59.279 33.333 0.00 0.00 45.66 2.40
2947 3241 7.054124 AGTGGTTTCAGTCAAACATAGAAGAA 58.946 34.615 0.00 0.00 45.66 2.52
2948 3242 6.591935 AGTGGTTTCAGTCAAACATAGAAGA 58.408 36.000 0.00 0.00 45.66 2.87
2949 3243 6.708054 AGAGTGGTTTCAGTCAAACATAGAAG 59.292 38.462 0.00 0.00 45.66 2.85
2950 3244 6.483307 CAGAGTGGTTTCAGTCAAACATAGAA 59.517 38.462 0.00 0.00 45.66 2.10
2951 3245 5.991606 CAGAGTGGTTTCAGTCAAACATAGA 59.008 40.000 0.00 0.00 45.66 1.98
2952 3246 5.760253 ACAGAGTGGTTTCAGTCAAACATAG 59.240 40.000 0.00 0.00 45.66 2.23
2953 3247 5.680619 ACAGAGTGGTTTCAGTCAAACATA 58.319 37.500 0.00 0.00 45.66 2.29
2954 3248 4.526970 ACAGAGTGGTTTCAGTCAAACAT 58.473 39.130 0.00 0.00 45.66 2.71
2955 3249 3.950397 ACAGAGTGGTTTCAGTCAAACA 58.050 40.909 0.00 0.00 45.66 2.83
2962 3256 3.815401 CAGGGTAAACAGAGTGGTTTCAG 59.185 47.826 0.00 0.00 41.07 3.02
2985 3279 3.244353 ACATTGGTGACTGACCTGAAGAG 60.244 47.826 0.00 0.00 46.32 2.85
3042 3336 3.518634 ACCGTGCTGAAATTGTTTGTT 57.481 38.095 0.00 0.00 0.00 2.83
3093 3387 3.519510 AGCCATCACTAAACTGAGCCTTA 59.480 43.478 0.00 0.00 0.00 2.69
3264 3558 9.199184 GTATAGCAAATTACGATGCGAATAATG 57.801 33.333 0.00 0.00 46.98 1.90
3265 3559 9.151471 AGTATAGCAAATTACGATGCGAATAAT 57.849 29.630 0.00 0.00 46.98 1.28
3271 3565 5.107989 ACGAAGTATAGCAAATTACGATGCG 60.108 40.000 0.00 0.00 43.87 4.73
3293 3587 3.050619 GAGAAGTTGACCACTGTGTACG 58.949 50.000 7.08 0.00 35.12 3.67
3299 3596 8.954950 AATATAAGATGAGAAGTTGACCACTG 57.045 34.615 0.00 0.00 35.12 3.66
3302 3599 9.605275 CAGAAATATAAGATGAGAAGTTGACCA 57.395 33.333 0.00 0.00 0.00 4.02
3303 3600 9.606631 ACAGAAATATAAGATGAGAAGTTGACC 57.393 33.333 0.00 0.00 0.00 4.02
3397 3694 7.546358 TGTACAAAATATCTGAAATTGGCAGG 58.454 34.615 0.00 0.00 34.20 4.85
3433 3730 8.854117 GCAGGTCAAGATATATTTTCAAGGATT 58.146 33.333 0.00 0.00 0.00 3.01
3434 3731 8.223330 AGCAGGTCAAGATATATTTTCAAGGAT 58.777 33.333 0.00 0.00 0.00 3.24
3456 3753 4.453478 TCAAATGAGAGCACTTAACAGCAG 59.547 41.667 0.00 0.00 0.00 4.24
3570 3867 9.856162 TGGTAAAGAAACCAGAGTTATTTACTT 57.144 29.630 17.29 0.00 44.68 2.24
3588 3885 9.436957 GAGAACAAGAACTTCATATGGTAAAGA 57.563 33.333 2.13 0.00 0.00 2.52
3664 3961 7.541783 TGCAGTATTTGTAATTCAACTTGATGC 59.458 33.333 0.00 0.00 35.61 3.91
3665 3962 8.969121 TGCAGTATTTGTAATTCAACTTGATG 57.031 30.769 0.00 0.00 35.61 3.07
3666 3963 9.013229 TCTGCAGTATTTGTAATTCAACTTGAT 57.987 29.630 14.67 0.00 35.61 2.57
3667 3964 8.389779 TCTGCAGTATTTGTAATTCAACTTGA 57.610 30.769 14.67 0.00 35.61 3.02
3695 3992 1.882623 GTATAGCTGCCATGGGAAAGC 59.117 52.381 15.13 11.83 35.19 3.51
3759 4056 3.340814 ACAGATGCAAGGAACCTACAG 57.659 47.619 0.00 0.00 0.00 2.74
3819 4116 4.943705 TCCAGCTTGATACTTTTCATCCAC 59.056 41.667 0.00 0.00 0.00 4.02
3860 4157 6.365970 ACAATGAGAAACTCACCTATCTGT 57.634 37.500 3.54 0.00 43.63 3.41
3861 4158 7.819415 TGTTACAATGAGAAACTCACCTATCTG 59.181 37.037 3.54 0.00 43.63 2.90
3862 4159 7.907389 TGTTACAATGAGAAACTCACCTATCT 58.093 34.615 3.54 0.00 43.63 1.98
3863 4160 8.547967 TTGTTACAATGAGAAACTCACCTATC 57.452 34.615 3.54 0.00 43.63 2.08
3864 4161 8.918202 TTTGTTACAATGAGAAACTCACCTAT 57.082 30.769 0.00 0.00 43.63 2.57
3865 4162 8.617809 GTTTTGTTACAATGAGAAACTCACCTA 58.382 33.333 0.00 0.00 43.63 3.08
3866 4163 7.122055 TGTTTTGTTACAATGAGAAACTCACCT 59.878 33.333 0.00 0.00 43.63 4.00
3867 4164 7.254852 TGTTTTGTTACAATGAGAAACTCACC 58.745 34.615 0.00 0.00 43.63 4.02
3868 4165 8.682128 TTGTTTTGTTACAATGAGAAACTCAC 57.318 30.769 0.00 0.00 43.63 3.51
3869 4166 9.515020 GATTGTTTTGTTACAATGAGAAACTCA 57.485 29.630 6.71 3.95 45.98 3.41
3870 4167 9.515020 TGATTGTTTTGTTACAATGAGAAACTC 57.485 29.630 6.71 0.00 45.98 3.01
3871 4168 9.868277 TTGATTGTTTTGTTACAATGAGAAACT 57.132 25.926 6.71 0.00 45.98 2.66
3881 4178 9.522804 GTTGGAGTAATTGATTGTTTTGTTACA 57.477 29.630 0.00 0.00 0.00 2.41
3882 4179 9.522804 TGTTGGAGTAATTGATTGTTTTGTTAC 57.477 29.630 0.00 0.00 0.00 2.50
3883 4180 9.522804 GTGTTGGAGTAATTGATTGTTTTGTTA 57.477 29.630 0.00 0.00 0.00 2.41
4103 4427 2.593978 CCAGACAGGGGCCATCTG 59.406 66.667 19.81 19.81 39.70 2.90
4121 4449 5.653507 TGGACCGATACATAAACTGTACAC 58.346 41.667 0.00 0.00 43.01 2.90
4131 4459 7.175467 ACACGATAATAGTTGGACCGATACATA 59.825 37.037 0.00 0.00 0.00 2.29
4155 4483 3.004629 CCAAAATGCTGTGCTGTTCTACA 59.995 43.478 0.00 0.00 0.00 2.74
4191 4519 1.073025 TTCAGTGGCACGCCTTGAT 59.927 52.632 12.71 0.00 41.54 2.57
4205 4533 6.183360 CCTGATTCTTGAATGCTACTGTTCAG 60.183 42.308 0.09 0.00 35.91 3.02
4284 4612 5.297776 GCATTCTCATACCTGTACAAATGCT 59.702 40.000 21.76 0.00 42.59 3.79
5091 5496 4.630069 ACCTGCATGTTACATAGTTTCGTC 59.370 41.667 0.00 0.00 0.00 4.20
5105 5510 6.490040 ACTGAACACTAAAATAACCTGCATGT 59.510 34.615 0.00 0.00 0.00 3.21
5149 5554 5.131642 TCAAGAGGGAGATGAGCAACAATAT 59.868 40.000 0.00 0.00 0.00 1.28
5150 5555 4.471025 TCAAGAGGGAGATGAGCAACAATA 59.529 41.667 0.00 0.00 0.00 1.90
5167 5572 3.564644 GCAGTTGATCCATCCATCAAGAG 59.435 47.826 0.00 0.00 42.26 2.85
5205 5610 0.898789 CCTGGGTCACCACGTACTCT 60.899 60.000 0.00 0.00 43.37 3.24
5392 5797 2.954684 GCTGGTCCATGTCCACCGA 61.955 63.158 0.00 0.00 35.15 4.69
5824 6254 4.869440 CTCAGGCTGCGAGCTCCG 62.869 72.222 10.34 4.62 41.99 4.63
5825 6255 4.527583 CCTCAGGCTGCGAGCTCC 62.528 72.222 10.34 1.40 41.99 4.70
5826 6256 3.768922 ACCTCAGGCTGCGAGCTC 61.769 66.667 10.34 2.73 41.99 4.09
5827 6257 4.079850 CACCTCAGGCTGCGAGCT 62.080 66.667 10.34 0.00 41.99 4.09
5828 6258 2.507110 TAACACCTCAGGCTGCGAGC 62.507 60.000 10.34 0.11 41.46 5.03
5829 6259 0.176680 ATAACACCTCAGGCTGCGAG 59.823 55.000 10.34 2.57 0.00 5.03
5830 6260 0.175760 GATAACACCTCAGGCTGCGA 59.824 55.000 10.34 0.00 0.00 5.10
5831 6261 1.148157 CGATAACACCTCAGGCTGCG 61.148 60.000 10.34 2.87 0.00 5.18
5832 6262 0.811616 CCGATAACACCTCAGGCTGC 60.812 60.000 10.34 0.00 0.00 5.25
5833 6263 0.537188 ACCGATAACACCTCAGGCTG 59.463 55.000 8.58 8.58 0.00 4.85
5834 6264 1.276622 AACCGATAACACCTCAGGCT 58.723 50.000 0.00 0.00 0.00 4.58
5836 6266 4.341235 TCATCTAACCGATAACACCTCAGG 59.659 45.833 0.00 0.00 0.00 3.86
5890 6320 4.735369 TCTTTGTATGAACCAACCACCAT 58.265 39.130 0.00 0.00 0.00 3.55
5891 6321 4.171878 TCTTTGTATGAACCAACCACCA 57.828 40.909 0.00 0.00 0.00 4.17
5892 6322 5.300792 TCTTTCTTTGTATGAACCAACCACC 59.699 40.000 0.00 0.00 0.00 4.61
5893 6323 6.183360 TGTCTTTCTTTGTATGAACCAACCAC 60.183 38.462 0.00 0.00 0.00 4.16
5897 6327 5.587043 ACGTGTCTTTCTTTGTATGAACCAA 59.413 36.000 0.00 0.00 0.00 3.67
5914 6344 6.147821 CACTTCCATAATTCAAGAACGTGTCT 59.852 38.462 0.00 0.00 38.69 3.41
5920 6350 6.088824 CACAGCACTTCCATAATTCAAGAAC 58.911 40.000 0.00 0.00 0.00 3.01
5926 6356 5.156355 CACAACACAGCACTTCCATAATTC 58.844 41.667 0.00 0.00 0.00 2.17
5981 6446 5.803967 GTGGAGTAAGTATTCTACCAACACG 59.196 44.000 0.00 0.00 0.00 4.49
5989 6454 9.865321 GTTATGTTGTGTGGAGTAAGTATTCTA 57.135 33.333 0.00 0.00 0.00 2.10
5990 6455 8.594550 AGTTATGTTGTGTGGAGTAAGTATTCT 58.405 33.333 0.00 0.00 0.00 2.40
5991 6456 8.773404 AGTTATGTTGTGTGGAGTAAGTATTC 57.227 34.615 0.00 0.00 0.00 1.75
5992 6457 8.999431 CAAGTTATGTTGTGTGGAGTAAGTATT 58.001 33.333 0.00 0.00 0.00 1.89
5993 6458 8.372459 TCAAGTTATGTTGTGTGGAGTAAGTAT 58.628 33.333 0.00 0.00 0.00 2.12
5994 6459 7.728148 TCAAGTTATGTTGTGTGGAGTAAGTA 58.272 34.615 0.00 0.00 0.00 2.24
5995 6460 6.588204 TCAAGTTATGTTGTGTGGAGTAAGT 58.412 36.000 0.00 0.00 0.00 2.24
5996 6461 7.490962 TTCAAGTTATGTTGTGTGGAGTAAG 57.509 36.000 0.00 0.00 0.00 2.34
5997 6462 7.867305 TTTCAAGTTATGTTGTGTGGAGTAA 57.133 32.000 0.00 0.00 0.00 2.24
5998 6463 7.867305 TTTTCAAGTTATGTTGTGTGGAGTA 57.133 32.000 0.00 0.00 0.00 2.59
5999 6464 6.767524 TTTTCAAGTTATGTTGTGTGGAGT 57.232 33.333 0.00 0.00 0.00 3.85
6000 6465 7.920151 TGAATTTTCAAGTTATGTTGTGTGGAG 59.080 33.333 0.00 0.00 33.55 3.86
6001 6466 7.776107 TGAATTTTCAAGTTATGTTGTGTGGA 58.224 30.769 0.00 0.00 33.55 4.02
6002 6467 7.920151 TCTGAATTTTCAAGTTATGTTGTGTGG 59.080 33.333 0.00 0.00 36.64 4.17
6051 6516 4.222366 TGTGCCCATATTGCAAAATGAGAA 59.778 37.500 1.71 0.00 41.06 2.87
6056 6521 3.977134 TGTGTGCCCATATTGCAAAAT 57.023 38.095 1.71 0.00 41.06 1.82
6068 6533 1.803334 TCAAGTTACGATGTGTGCCC 58.197 50.000 0.00 0.00 0.00 5.36
6077 6542 5.006844 TCGACTGCAAATTTTCAAGTTACGA 59.993 36.000 0.00 0.00 0.00 3.43
6095 6560 2.492088 TCAACTATCTGTGGGTCGACTG 59.508 50.000 16.46 0.95 0.00 3.51
6108 6573 7.576236 CATTCGTGTATCCCATTTCAACTATC 58.424 38.462 0.00 0.00 0.00 2.08
6155 7277 3.777910 GGTGGTACCGGTGCCGAT 61.778 66.667 32.81 0.61 42.83 4.18
6164 7286 2.102588 AGAGCATTACATCGGTGGTACC 59.897 50.000 4.43 4.43 34.05 3.34
6169 7291 2.862536 CACAGAGAGCATTACATCGGTG 59.137 50.000 0.00 0.00 32.93 4.94
6170 7292 2.159043 CCACAGAGAGCATTACATCGGT 60.159 50.000 0.00 0.00 0.00 4.69
6173 7295 4.507710 TGAACCACAGAGAGCATTACATC 58.492 43.478 0.00 0.00 0.00 3.06
6182 7304 3.937706 GACCATTGATGAACCACAGAGAG 59.062 47.826 0.00 0.00 0.00 3.20
6188 7310 3.679389 AGACAGACCATTGATGAACCAC 58.321 45.455 0.00 0.00 0.00 4.16
6189 7311 4.202451 TGAAGACAGACCATTGATGAACCA 60.202 41.667 0.00 0.00 0.00 3.67
6199 7321 3.505386 AGAGAGTGTGAAGACAGACCAT 58.495 45.455 0.00 0.00 40.51 3.55
6202 7324 2.550606 ACGAGAGAGTGTGAAGACAGAC 59.449 50.000 0.00 0.00 40.03 3.51
6210 7332 2.861006 CGCGACGAGAGAGTGTGA 59.139 61.111 0.00 0.00 0.00 3.58
6211 7333 2.872001 GCGCGACGAGAGAGTGTG 60.872 66.667 12.10 0.00 0.00 3.82
6212 7334 4.104417 GGCGCGACGAGAGAGTGT 62.104 66.667 12.10 0.00 0.00 3.55
6213 7335 4.838486 GGGCGCGACGAGAGAGTG 62.838 72.222 12.10 0.00 0.00 3.51
6216 7338 1.989966 CTTAAGGGCGCGACGAGAGA 61.990 60.000 12.10 0.00 0.00 3.10
6217 7339 1.586564 CTTAAGGGCGCGACGAGAG 60.587 63.158 12.10 0.00 0.00 3.20
6218 7340 1.870055 AACTTAAGGGCGCGACGAGA 61.870 55.000 12.10 0.00 0.00 4.04
6219 7341 1.012486 AAACTTAAGGGCGCGACGAG 61.012 55.000 12.10 5.94 0.00 4.18
6220 7342 1.005867 AAACTTAAGGGCGCGACGA 60.006 52.632 12.10 0.00 0.00 4.20
6227 7349 2.229062 GGTTCAGCTGAAACTTAAGGGC 59.771 50.000 32.62 16.43 38.65 5.19
6245 7367 0.822121 GCCCCGTTGACTTTGAGGTT 60.822 55.000 0.00 0.00 0.00 3.50
6266 7388 0.668706 CTCGGGCGATTATGGCTCTG 60.669 60.000 0.00 0.00 34.31 3.35
6324 7446 4.788100 GTGTAACGATGATGATGTTGTTGC 59.212 41.667 0.00 0.00 0.00 4.17
6340 7462 2.339418 TGCGGTTAAGGATGTGTAACG 58.661 47.619 0.00 0.00 42.39 3.18
6341 7463 3.370061 GTCTGCGGTTAAGGATGTGTAAC 59.630 47.826 0.00 0.00 37.35 2.50
6342 7464 3.592059 GTCTGCGGTTAAGGATGTGTAA 58.408 45.455 0.00 0.00 0.00 2.41
6346 7468 0.739813 GCGTCTGCGGTTAAGGATGT 60.740 55.000 0.00 0.00 38.78 3.06
6361 7483 1.198608 CGGTCGATCGGTTTAGCGTC 61.199 60.000 16.41 0.00 0.00 5.19
6363 7485 0.317603 ATCGGTCGATCGGTTTAGCG 60.318 55.000 19.53 16.71 0.00 4.26
6376 7498 2.000447 GTGTGCCTTTGTAGATCGGTC 59.000 52.381 0.00 0.00 0.00 4.79
6380 7502 1.438651 TGCGTGTGCCTTTGTAGATC 58.561 50.000 0.00 0.00 41.78 2.75
6384 7506 1.095600 TTGTTGCGTGTGCCTTTGTA 58.904 45.000 0.00 0.00 41.78 2.41
6391 7513 0.247894 TTTCTCGTTGTTGCGTGTGC 60.248 50.000 0.00 0.00 43.20 4.57
6403 7525 3.553828 TGTTCTCCTTGGTTTTCTCGT 57.446 42.857 0.00 0.00 0.00 4.18
6408 7530 4.349365 TCCTGTTTGTTCTCCTTGGTTTT 58.651 39.130 0.00 0.00 0.00 2.43
6413 7535 4.645535 TCTCATCCTGTTTGTTCTCCTTG 58.354 43.478 0.00 0.00 0.00 3.61
6416 7538 4.389374 TGTTCTCATCCTGTTTGTTCTCC 58.611 43.478 0.00 0.00 0.00 3.71
6417 7539 5.300752 TCTGTTCTCATCCTGTTTGTTCTC 58.699 41.667 0.00 0.00 0.00 2.87
6418 7540 5.163258 ACTCTGTTCTCATCCTGTTTGTTCT 60.163 40.000 0.00 0.00 0.00 3.01
6420 7542 5.041191 ACTCTGTTCTCATCCTGTTTGTT 57.959 39.130 0.00 0.00 0.00 2.83
6421 7543 4.696479 ACTCTGTTCTCATCCTGTTTGT 57.304 40.909 0.00 0.00 0.00 2.83
6422 7544 6.030548 TCTACTCTGTTCTCATCCTGTTTG 57.969 41.667 0.00 0.00 0.00 2.93
6426 7548 3.243035 CGCTCTACTCTGTTCTCATCCTG 60.243 52.174 0.00 0.00 0.00 3.86
6427 7549 2.948979 CGCTCTACTCTGTTCTCATCCT 59.051 50.000 0.00 0.00 0.00 3.24
6428 7550 2.034053 CCGCTCTACTCTGTTCTCATCC 59.966 54.545 0.00 0.00 0.00 3.51
6429 7551 2.034053 CCCGCTCTACTCTGTTCTCATC 59.966 54.545 0.00 0.00 0.00 2.92
6430 7552 2.028130 CCCGCTCTACTCTGTTCTCAT 58.972 52.381 0.00 0.00 0.00 2.90
6431 7553 1.464734 CCCGCTCTACTCTGTTCTCA 58.535 55.000 0.00 0.00 0.00 3.27
6432 7554 0.101579 GCCCGCTCTACTCTGTTCTC 59.898 60.000 0.00 0.00 0.00 2.87
6447 7569 2.246739 CCGCAGATGTATGTGCCCG 61.247 63.158 8.21 0.00 43.41 6.13
6463 7585 1.613437 ACAATTCCCAAAAGCTCACCG 59.387 47.619 0.00 0.00 0.00 4.94
6473 7595 1.479368 GGCCAAGGCACAATTCCCAA 61.479 55.000 13.87 0.00 44.11 4.12
6477 7599 0.101219 GATCGGCCAAGGCACAATTC 59.899 55.000 13.87 0.00 44.11 2.17
6479 7601 0.611618 TTGATCGGCCAAGGCACAAT 60.612 50.000 13.87 2.69 44.11 2.71
6488 7610 2.684374 CAACATCATCTTTGATCGGCCA 59.316 45.455 2.24 0.00 40.70 5.36
6572 7694 1.026182 TCACCAAGATCATGTGCGGC 61.026 55.000 0.00 0.00 0.00 6.53
6573 7695 1.671979 ATCACCAAGATCATGTGCGG 58.328 50.000 0.00 0.00 28.20 5.69
6586 7708 5.047021 CAGGTCTACTCTTTCAAGATCACCA 60.047 44.000 0.00 0.00 33.93 4.17
6613 7735 1.599576 GAGACAGAAGGGGTCAGCC 59.400 63.158 0.00 0.00 37.74 4.85
6626 7748 0.616395 TACCCTCCAATGCCGAGACA 60.616 55.000 0.00 0.00 0.00 3.41
6632 7754 2.927056 CCCCTACCCTCCAATGCC 59.073 66.667 0.00 0.00 0.00 4.40
6639 7761 3.155167 CGGACTGCCCCTACCCTC 61.155 72.222 0.00 0.00 0.00 4.30
6674 7796 1.027357 CTACATTGAGCCCCATGCAC 58.973 55.000 0.00 0.00 44.83 4.57
6676 7798 0.466922 AGCTACATTGAGCCCCATGC 60.467 55.000 0.00 0.00 43.97 4.06
6700 7822 7.232330 TGGATTGACTGATTTGGTTAATTGTGA 59.768 33.333 0.00 0.00 0.00 3.58
6701 7823 7.377398 TGGATTGACTGATTTGGTTAATTGTG 58.623 34.615 0.00 0.00 0.00 3.33
6702 7824 7.233348 ACTGGATTGACTGATTTGGTTAATTGT 59.767 33.333 0.00 0.00 0.00 2.71
6705 7827 7.781324 AACTGGATTGACTGATTTGGTTAAT 57.219 32.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.