Multiple sequence alignment - TraesCS2D01G582200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G582200 chr2D 100.000 3434 0 0 1 3434 643191219 643194652 0.000000e+00 6342.0
1 TraesCS2D01G582200 chr2D 84.967 153 9 10 482 622 643191545 643191695 3.570000e-30 143.0
2 TraesCS2D01G582200 chr2D 84.967 153 9 10 327 477 643191700 643191840 3.570000e-30 143.0
3 TraesCS2D01G582200 chrUn 88.103 2631 127 76 473 3040 31688369 31690876 0.000000e+00 2953.0
4 TraesCS2D01G582200 chrUn 87.042 355 43 2 3080 3434 31691545 31691896 6.910000e-107 398.0
5 TraesCS2D01G582200 chr2A 88.536 2207 105 75 473 2638 768085556 768087655 0.000000e+00 2538.0
6 TraesCS2D01G582200 chr2A 93.352 361 23 1 3074 3434 768089254 768089613 1.810000e-147 532.0
7 TraesCS2D01G582200 chr2A 75.668 337 48 21 105 432 768085353 768085664 1.660000e-28 137.0
8 TraesCS2D01G582200 chr2A 87.069 116 8 5 2962 3070 768087693 768087808 1.290000e-24 124.0
9 TraesCS2D01G582200 chr3B 91.176 68 5 1 100 166 228206270 228206203 1.310000e-14 91.6
10 TraesCS2D01G582200 chr3B 88.060 67 7 1 100 166 483421261 483421326 1.020000e-10 78.7
11 TraesCS2D01G582200 chr3D 89.041 73 7 1 95 166 157099446 157099374 4.720000e-14 89.8
12 TraesCS2D01G582200 chr4D 89.394 66 6 1 100 164 268071176 268071241 7.900000e-12 82.4
13 TraesCS2D01G582200 chr4D 84.146 82 12 1 86 166 101665717 101665636 1.020000e-10 78.7
14 TraesCS2D01G582200 chr7A 88.060 67 7 1 100 166 623742186 623742121 1.020000e-10 78.7
15 TraesCS2D01G582200 chr7A 88.060 67 7 1 100 166 623776221 623776156 1.020000e-10 78.7
16 TraesCS2D01G582200 chr7A 92.683 41 0 2 1216 1253 79641036 79641076 4.790000e-04 56.5
17 TraesCS2D01G582200 chr3A 88.060 67 7 1 100 166 243663356 243663421 1.020000e-10 78.7
18 TraesCS2D01G582200 chr7B 92.857 42 0 2 1215 1253 21667097 21667138 1.330000e-04 58.4
19 TraesCS2D01G582200 chr7D 92.683 41 0 2 1216 1253 75353093 75353133 4.790000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G582200 chr2D 643191219 643194652 3433 False 2209.333333 6342 89.97800 1 3434 3 chr2D.!!$F1 3433
1 TraesCS2D01G582200 chrUn 31688369 31691896 3527 False 1675.500000 2953 87.57250 473 3434 2 chrUn.!!$F1 2961
2 TraesCS2D01G582200 chr2A 768085353 768089613 4260 False 832.750000 2538 86.15625 105 3434 4 chr2A.!!$F1 3329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.035630 AGCTCTCTGTGATGCCCAAC 60.036 55.0 0.00 0.0 0.0 3.77 F
243 249 0.110419 TATCTTTTGTGCGTGCGTGC 60.110 50.0 0.00 0.0 0.0 5.34 F
1661 1766 0.035152 TGCTTGCTTGGTCGATCCAT 60.035 50.0 7.43 0.0 46.6 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1760 0.179000 AGAACTCGTGGCCATGGATC 59.821 55.0 24.78 18.58 0.00 3.36 R
1675 1780 0.242825 GCATCAAGCAAGCAAGAGCA 59.757 50.0 0.00 0.00 43.38 4.26 R
2526 2653 0.167251 CACCACGGCGATACAAAACC 59.833 55.0 16.62 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.910994 GCCATGCCATGCTCCTCC 60.911 66.667 0.00 0.00 0.00 4.30
24 25 2.599032 CCATGCCATGCTCCTCCA 59.401 61.111 0.00 0.00 0.00 3.86
25 26 1.826921 CCATGCCATGCTCCTCCAC 60.827 63.158 0.00 0.00 0.00 4.02
26 27 1.077285 CATGCCATGCTCCTCCACA 60.077 57.895 0.00 0.00 0.00 4.17
27 28 0.681887 CATGCCATGCTCCTCCACAA 60.682 55.000 0.00 0.00 0.00 3.33
28 29 0.682209 ATGCCATGCTCCTCCACAAC 60.682 55.000 0.00 0.00 0.00 3.32
29 30 1.303561 GCCATGCTCCTCCACAACA 60.304 57.895 0.00 0.00 0.00 3.33
30 31 1.310933 GCCATGCTCCTCCACAACAG 61.311 60.000 0.00 0.00 0.00 3.16
31 32 0.325933 CCATGCTCCTCCACAACAGA 59.674 55.000 0.00 0.00 0.00 3.41
32 33 1.446907 CATGCTCCTCCACAACAGAC 58.553 55.000 0.00 0.00 0.00 3.51
33 34 1.002888 CATGCTCCTCCACAACAGACT 59.997 52.381 0.00 0.00 0.00 3.24
34 35 0.394192 TGCTCCTCCACAACAGACTG 59.606 55.000 0.00 0.00 0.00 3.51
35 36 0.394565 GCTCCTCCACAACAGACTGT 59.605 55.000 1.07 1.07 0.00 3.55
36 37 1.875576 GCTCCTCCACAACAGACTGTG 60.876 57.143 9.33 6.20 45.24 3.66
37 38 1.414181 CTCCTCCACAACAGACTGTGT 59.586 52.381 9.33 6.85 44.35 3.72
38 39 1.412710 TCCTCCACAACAGACTGTGTC 59.587 52.381 9.33 0.00 44.35 3.67
39 40 1.491670 CTCCACAACAGACTGTGTCG 58.508 55.000 9.33 3.68 44.35 4.35
40 41 0.104120 TCCACAACAGACTGTGTCGG 59.896 55.000 9.33 9.73 44.35 4.79
41 42 0.179084 CCACAACAGACTGTGTCGGT 60.179 55.000 9.33 2.90 44.35 4.69
43 44 1.593006 CACAACAGACTGTGTCGGTTC 59.407 52.381 9.33 0.00 44.77 3.62
44 45 1.206132 ACAACAGACTGTGTCGGTTCA 59.794 47.619 9.33 0.00 44.77 3.18
45 46 2.158957 ACAACAGACTGTGTCGGTTCAT 60.159 45.455 9.33 3.28 44.77 2.57
46 47 2.872245 CAACAGACTGTGTCGGTTCATT 59.128 45.455 9.33 0.00 44.77 2.57
47 48 3.194005 ACAGACTGTGTCGGTTCATTT 57.806 42.857 7.47 0.00 37.68 2.32
48 49 3.131396 ACAGACTGTGTCGGTTCATTTC 58.869 45.455 7.47 0.00 37.68 2.17
49 50 3.130633 CAGACTGTGTCGGTTCATTTCA 58.869 45.455 0.00 0.00 37.67 2.69
50 51 3.185188 CAGACTGTGTCGGTTCATTTCAG 59.815 47.826 0.00 0.00 37.67 3.02
51 52 1.873591 ACTGTGTCGGTTCATTTCAGC 59.126 47.619 0.00 0.00 0.00 4.26
52 53 2.146342 CTGTGTCGGTTCATTTCAGCT 58.854 47.619 0.00 0.00 0.00 4.24
53 54 2.143122 TGTGTCGGTTCATTTCAGCTC 58.857 47.619 0.00 0.00 0.00 4.09
54 55 2.224281 TGTGTCGGTTCATTTCAGCTCT 60.224 45.455 0.00 0.00 0.00 4.09
55 56 2.413453 GTGTCGGTTCATTTCAGCTCTC 59.587 50.000 0.00 0.00 0.00 3.20
56 57 2.300152 TGTCGGTTCATTTCAGCTCTCT 59.700 45.455 0.00 0.00 0.00 3.10
57 58 2.670414 GTCGGTTCATTTCAGCTCTCTG 59.330 50.000 0.00 0.00 41.67 3.35
58 59 2.300152 TCGGTTCATTTCAGCTCTCTGT 59.700 45.455 0.00 0.00 41.10 3.41
59 60 2.414481 CGGTTCATTTCAGCTCTCTGTG 59.586 50.000 0.00 0.00 41.10 3.66
60 61 3.668447 GGTTCATTTCAGCTCTCTGTGA 58.332 45.455 0.00 0.00 41.10 3.58
61 62 4.260170 GGTTCATTTCAGCTCTCTGTGAT 58.740 43.478 0.00 0.00 41.10 3.06
62 63 4.094590 GGTTCATTTCAGCTCTCTGTGATG 59.905 45.833 0.00 0.00 41.10 3.07
63 64 3.268330 TCATTTCAGCTCTCTGTGATGC 58.732 45.455 0.00 0.00 41.10 3.91
64 65 2.105006 TTTCAGCTCTCTGTGATGCC 57.895 50.000 0.00 0.00 41.10 4.40
65 66 0.251354 TTCAGCTCTCTGTGATGCCC 59.749 55.000 0.00 0.00 41.10 5.36
66 67 0.906282 TCAGCTCTCTGTGATGCCCA 60.906 55.000 0.00 0.00 41.10 5.36
67 68 0.035725 CAGCTCTCTGTGATGCCCAA 60.036 55.000 0.00 0.00 35.61 4.12
68 69 0.035630 AGCTCTCTGTGATGCCCAAC 60.036 55.000 0.00 0.00 0.00 3.77
69 70 0.035630 GCTCTCTGTGATGCCCAACT 60.036 55.000 0.00 0.00 0.00 3.16
70 71 2.011046 GCTCTCTGTGATGCCCAACTC 61.011 57.143 0.00 0.00 0.00 3.01
71 72 0.615331 TCTCTGTGATGCCCAACTCC 59.385 55.000 0.00 0.00 0.00 3.85
72 73 0.742281 CTCTGTGATGCCCAACTCCG 60.742 60.000 0.00 0.00 0.00 4.63
73 74 1.191489 TCTGTGATGCCCAACTCCGA 61.191 55.000 0.00 0.00 0.00 4.55
74 75 0.321564 CTGTGATGCCCAACTCCGAA 60.322 55.000 0.00 0.00 0.00 4.30
75 76 0.327924 TGTGATGCCCAACTCCGAAT 59.672 50.000 0.00 0.00 0.00 3.34
76 77 1.271871 TGTGATGCCCAACTCCGAATT 60.272 47.619 0.00 0.00 0.00 2.17
77 78 1.133025 GTGATGCCCAACTCCGAATTG 59.867 52.381 0.00 0.00 0.00 2.32
78 79 1.004161 TGATGCCCAACTCCGAATTGA 59.996 47.619 0.00 0.00 0.00 2.57
79 80 2.301346 GATGCCCAACTCCGAATTGAT 58.699 47.619 0.00 0.00 0.00 2.57
80 81 1.462616 TGCCCAACTCCGAATTGATG 58.537 50.000 0.00 0.00 0.00 3.07
81 82 0.740737 GCCCAACTCCGAATTGATGG 59.259 55.000 0.00 0.00 0.00 3.51
82 83 0.740737 CCCAACTCCGAATTGATGGC 59.259 55.000 0.00 0.00 0.00 4.40
83 84 1.462616 CCAACTCCGAATTGATGGCA 58.537 50.000 0.00 0.00 0.00 4.92
84 85 1.133025 CCAACTCCGAATTGATGGCAC 59.867 52.381 0.00 0.00 0.00 5.01
85 86 2.086869 CAACTCCGAATTGATGGCACT 58.913 47.619 0.00 0.00 0.00 4.40
86 87 3.270027 CAACTCCGAATTGATGGCACTA 58.730 45.455 0.00 0.00 0.00 2.74
87 88 3.845781 ACTCCGAATTGATGGCACTAT 57.154 42.857 0.00 0.00 0.00 2.12
88 89 4.156455 ACTCCGAATTGATGGCACTATT 57.844 40.909 0.00 0.00 0.00 1.73
89 90 3.879295 ACTCCGAATTGATGGCACTATTG 59.121 43.478 0.00 0.00 0.00 1.90
90 91 3.879295 CTCCGAATTGATGGCACTATTGT 59.121 43.478 0.00 0.00 0.00 2.71
91 92 4.269183 TCCGAATTGATGGCACTATTGTT 58.731 39.130 0.00 0.00 0.00 2.83
92 93 5.432645 TCCGAATTGATGGCACTATTGTTA 58.567 37.500 0.00 0.00 0.00 2.41
93 94 6.061441 TCCGAATTGATGGCACTATTGTTAT 58.939 36.000 0.00 0.00 0.00 1.89
94 95 6.204688 TCCGAATTGATGGCACTATTGTTATC 59.795 38.462 0.00 0.00 0.00 1.75
95 96 6.017192 CCGAATTGATGGCACTATTGTTATCA 60.017 38.462 0.00 0.00 0.00 2.15
96 97 7.308770 CCGAATTGATGGCACTATTGTTATCAT 60.309 37.037 0.00 0.00 31.55 2.45
97 98 7.536281 CGAATTGATGGCACTATTGTTATCATG 59.464 37.037 0.00 0.00 31.55 3.07
98 99 5.694231 TGATGGCACTATTGTTATCATGC 57.306 39.130 0.00 0.00 0.00 4.06
99 100 5.131784 TGATGGCACTATTGTTATCATGCA 58.868 37.500 0.00 0.00 34.73 3.96
100 101 4.898829 TGGCACTATTGTTATCATGCAC 57.101 40.909 0.00 0.00 34.73 4.57
101 102 4.525996 TGGCACTATTGTTATCATGCACT 58.474 39.130 0.00 0.00 34.73 4.40
102 103 4.576053 TGGCACTATTGTTATCATGCACTC 59.424 41.667 0.00 0.00 34.73 3.51
103 104 4.023707 GGCACTATTGTTATCATGCACTCC 60.024 45.833 0.00 0.00 34.73 3.85
111 112 0.179000 ATCATGCACTCCCTCCGTTC 59.821 55.000 0.00 0.00 0.00 3.95
114 115 0.824759 ATGCACTCCCTCCGTTCTAC 59.175 55.000 0.00 0.00 0.00 2.59
116 117 0.824759 GCACTCCCTCCGTTCTACAT 59.175 55.000 0.00 0.00 0.00 2.29
119 120 3.118884 GCACTCCCTCCGTTCTACATTAA 60.119 47.826 0.00 0.00 0.00 1.40
120 121 4.683832 CACTCCCTCCGTTCTACATTAAG 58.316 47.826 0.00 0.00 0.00 1.85
124 125 4.529377 TCCCTCCGTTCTACATTAAGTGTT 59.471 41.667 0.00 0.00 42.29 3.32
127 128 5.699458 CCTCCGTTCTACATTAAGTGTTGTT 59.301 40.000 0.00 0.00 42.29 2.83
129 130 6.050432 TCCGTTCTACATTAAGTGTTGTTGT 58.950 36.000 0.00 0.00 42.29 3.32
132 133 8.336806 CCGTTCTACATTAAGTGTTGTTGTTTA 58.663 33.333 0.00 0.00 42.29 2.01
133 134 9.150653 CGTTCTACATTAAGTGTTGTTGTTTAC 57.849 33.333 0.00 0.00 42.29 2.01
169 171 6.097356 ACTAAATCAGCGACACTTATTCGAA 58.903 36.000 0.00 0.00 38.85 3.71
173 175 4.552355 TCAGCGACACTTATTCGAAGAAA 58.448 39.130 6.68 1.35 45.90 2.52
180 182 7.253983 GCGACACTTATTCGAAGAAATGTCATA 60.254 37.037 32.98 6.58 45.90 2.15
192 198 8.400947 CGAAGAAATGTCATATCCAAAATGAGT 58.599 33.333 0.00 0.00 34.12 3.41
199 205 9.872684 ATGTCATATCCAAAATGAGTAGGAAAT 57.127 29.630 0.00 0.00 34.12 2.17
202 208 9.489084 TCATATCCAAAATGAGTAGGAAATACG 57.511 33.333 0.00 0.00 39.55 3.06
224 230 3.586430 GCAAAATGCTCCGGTGTTT 57.414 47.368 0.00 0.00 40.96 2.83
225 231 2.715737 GCAAAATGCTCCGGTGTTTA 57.284 45.000 0.00 0.00 40.96 2.01
226 232 3.230743 GCAAAATGCTCCGGTGTTTAT 57.769 42.857 0.00 0.00 40.96 1.40
227 233 3.179048 GCAAAATGCTCCGGTGTTTATC 58.821 45.455 0.00 0.00 40.96 1.75
228 234 3.119495 GCAAAATGCTCCGGTGTTTATCT 60.119 43.478 0.00 0.00 40.96 1.98
229 235 4.618227 GCAAAATGCTCCGGTGTTTATCTT 60.618 41.667 0.00 0.00 40.96 2.40
230 236 5.469479 CAAAATGCTCCGGTGTTTATCTTT 58.531 37.500 0.00 0.00 0.00 2.52
231 237 5.722021 AAATGCTCCGGTGTTTATCTTTT 57.278 34.783 0.00 0.00 0.00 2.27
232 238 4.701956 ATGCTCCGGTGTTTATCTTTTG 57.298 40.909 0.00 0.00 0.00 2.44
233 239 3.482436 TGCTCCGGTGTTTATCTTTTGT 58.518 40.909 0.00 0.00 0.00 2.83
234 240 3.252215 TGCTCCGGTGTTTATCTTTTGTG 59.748 43.478 0.00 0.00 0.00 3.33
235 241 3.821841 CTCCGGTGTTTATCTTTTGTGC 58.178 45.455 0.00 0.00 0.00 4.57
236 242 2.224549 TCCGGTGTTTATCTTTTGTGCG 59.775 45.455 0.00 0.00 0.00 5.34
237 243 2.031508 CCGGTGTTTATCTTTTGTGCGT 60.032 45.455 0.00 0.00 0.00 5.24
238 244 2.970609 CGGTGTTTATCTTTTGTGCGTG 59.029 45.455 0.00 0.00 0.00 5.34
239 245 2.724174 GGTGTTTATCTTTTGTGCGTGC 59.276 45.455 0.00 0.00 0.00 5.34
240 246 2.400408 GTGTTTATCTTTTGTGCGTGCG 59.600 45.455 0.00 0.00 0.00 5.34
241 247 2.032302 TGTTTATCTTTTGTGCGTGCGT 59.968 40.909 0.00 0.00 0.00 5.24
242 248 2.308347 TTATCTTTTGTGCGTGCGTG 57.692 45.000 0.00 0.00 0.00 5.34
243 249 0.110419 TATCTTTTGTGCGTGCGTGC 60.110 50.000 0.00 0.00 0.00 5.34
244 250 3.378042 CTTTTGTGCGTGCGTGCG 61.378 61.111 0.00 0.00 37.81 5.34
245 251 4.167359 TTTTGTGCGTGCGTGCGT 62.167 55.556 3.11 0.00 37.81 5.24
246 252 4.877882 TTTGTGCGTGCGTGCGTG 62.878 61.111 3.11 0.00 37.81 5.34
282 288 3.068024 TGTTGGTGATTCTGCAAGGTTTC 59.932 43.478 0.00 0.00 0.00 2.78
283 289 2.942804 TGGTGATTCTGCAAGGTTTCA 58.057 42.857 0.00 0.00 0.00 2.69
285 291 3.896888 TGGTGATTCTGCAAGGTTTCAAT 59.103 39.130 0.00 0.00 0.00 2.57
294 300 3.826157 TGCAAGGTTTCAATAGGAACCAG 59.174 43.478 8.31 1.94 34.56 4.00
295 301 3.367395 GCAAGGTTTCAATAGGAACCAGC 60.367 47.826 8.31 7.68 34.56 4.85
296 302 3.806949 AGGTTTCAATAGGAACCAGCA 57.193 42.857 8.31 0.00 34.56 4.41
300 321 4.156739 GGTTTCAATAGGAACCAGCAGAAG 59.843 45.833 0.82 0.00 34.56 2.85
304 325 2.270434 TAGGAACCAGCAGAAGGGAT 57.730 50.000 0.00 0.00 0.00 3.85
306 327 0.620556 GGAACCAGCAGAAGGGATCA 59.379 55.000 0.00 0.00 0.00 2.92
312 333 2.573369 CAGCAGAAGGGATCAAGGATG 58.427 52.381 0.00 0.00 0.00 3.51
314 335 1.590932 CAGAAGGGATCAAGGATGCG 58.409 55.000 0.00 0.00 31.06 4.73
317 338 0.179034 AAGGGATCAAGGATGCGAGC 60.179 55.000 0.00 0.00 31.06 5.03
318 339 1.146930 GGGATCAAGGATGCGAGCA 59.853 57.895 0.00 0.00 31.06 4.26
319 340 0.883814 GGGATCAAGGATGCGAGCAG 60.884 60.000 3.58 0.00 31.06 4.24
330 351 4.528002 CGAGCAGCAAAGCACTTG 57.472 55.556 0.00 0.00 38.15 3.16
339 360 2.512485 CAAAGCACTTGCCATGTCAA 57.488 45.000 0.00 0.00 43.38 3.18
340 361 2.129607 CAAAGCACTTGCCATGTCAAC 58.870 47.619 0.00 0.00 43.38 3.18
341 362 0.675633 AAGCACTTGCCATGTCAACC 59.324 50.000 0.00 0.00 43.38 3.77
342 363 0.178981 AGCACTTGCCATGTCAACCT 60.179 50.000 0.00 0.00 43.38 3.50
343 364 0.242017 GCACTTGCCATGTCAACCTC 59.758 55.000 0.00 0.00 34.31 3.85
344 365 1.608055 CACTTGCCATGTCAACCTCA 58.392 50.000 0.00 0.00 0.00 3.86
345 366 1.538512 CACTTGCCATGTCAACCTCAG 59.461 52.381 0.00 0.00 0.00 3.35
346 367 1.421268 ACTTGCCATGTCAACCTCAGA 59.579 47.619 0.00 0.00 0.00 3.27
347 368 2.040813 ACTTGCCATGTCAACCTCAGAT 59.959 45.455 0.00 0.00 0.00 2.90
348 369 2.885135 TGCCATGTCAACCTCAGATT 57.115 45.000 0.00 0.00 0.00 2.40
349 370 2.439409 TGCCATGTCAACCTCAGATTG 58.561 47.619 0.00 0.00 0.00 2.67
350 371 2.224843 TGCCATGTCAACCTCAGATTGT 60.225 45.455 0.00 0.00 0.00 2.71
351 372 2.821969 GCCATGTCAACCTCAGATTGTT 59.178 45.455 0.00 0.00 0.00 2.83
352 373 3.119708 GCCATGTCAACCTCAGATTGTTC 60.120 47.826 0.00 0.00 0.00 3.18
353 374 4.074259 CCATGTCAACCTCAGATTGTTCA 58.926 43.478 0.00 0.00 0.00 3.18
354 375 4.155462 CCATGTCAACCTCAGATTGTTCAG 59.845 45.833 0.00 0.00 0.00 3.02
355 376 3.743521 TGTCAACCTCAGATTGTTCAGG 58.256 45.455 0.00 0.00 0.00 3.86
356 377 2.485814 GTCAACCTCAGATTGTTCAGGC 59.514 50.000 0.00 0.00 0.00 4.85
357 378 1.815003 CAACCTCAGATTGTTCAGGCC 59.185 52.381 0.00 0.00 0.00 5.19
358 379 0.329596 ACCTCAGATTGTTCAGGCCC 59.670 55.000 0.00 0.00 0.00 5.80
359 380 0.745845 CCTCAGATTGTTCAGGCCCG 60.746 60.000 0.00 0.00 0.00 6.13
360 381 0.745845 CTCAGATTGTTCAGGCCCGG 60.746 60.000 0.00 0.00 0.00 5.73
361 382 1.750399 CAGATTGTTCAGGCCCGGG 60.750 63.158 19.09 19.09 0.00 5.73
362 383 3.140814 GATTGTTCAGGCCCGGGC 61.141 66.667 38.57 38.57 41.06 6.13
378 399 2.743928 GCCAGAGGCGGTGAACAG 60.744 66.667 0.00 0.00 39.62 3.16
379 400 2.743718 CCAGAGGCGGTGAACAGT 59.256 61.111 0.00 0.00 0.00 3.55
380 401 1.669115 CCAGAGGCGGTGAACAGTG 60.669 63.158 0.00 0.00 0.00 3.66
381 402 1.669115 CAGAGGCGGTGAACAGTGG 60.669 63.158 0.00 0.00 0.00 4.00
382 403 1.837051 AGAGGCGGTGAACAGTGGA 60.837 57.895 0.00 0.00 0.00 4.02
383 404 1.374758 GAGGCGGTGAACAGTGGAG 60.375 63.158 0.00 0.00 0.00 3.86
384 405 2.100879 GAGGCGGTGAACAGTGGAGT 62.101 60.000 0.00 0.00 0.00 3.85
385 406 1.961277 GGCGGTGAACAGTGGAGTG 60.961 63.158 0.00 0.00 0.00 3.51
386 407 1.069090 GCGGTGAACAGTGGAGTGA 59.931 57.895 0.00 0.00 0.00 3.41
387 408 0.946221 GCGGTGAACAGTGGAGTGAG 60.946 60.000 0.00 0.00 0.00 3.51
388 409 0.389391 CGGTGAACAGTGGAGTGAGT 59.611 55.000 0.00 0.00 0.00 3.41
389 410 1.869754 CGGTGAACAGTGGAGTGAGTG 60.870 57.143 0.00 0.00 0.00 3.51
390 411 1.412710 GGTGAACAGTGGAGTGAGTGA 59.587 52.381 0.00 0.00 0.00 3.41
391 412 2.546795 GGTGAACAGTGGAGTGAGTGAG 60.547 54.545 0.00 0.00 0.00 3.51
392 413 2.362397 GTGAACAGTGGAGTGAGTGAGA 59.638 50.000 0.00 0.00 0.00 3.27
393 414 2.625314 TGAACAGTGGAGTGAGTGAGAG 59.375 50.000 0.00 0.00 0.00 3.20
394 415 2.666272 ACAGTGGAGTGAGTGAGAGA 57.334 50.000 0.00 0.00 0.00 3.10
395 416 2.513753 ACAGTGGAGTGAGTGAGAGAG 58.486 52.381 0.00 0.00 0.00 3.20
396 417 1.202114 CAGTGGAGTGAGTGAGAGAGC 59.798 57.143 0.00 0.00 0.00 4.09
397 418 1.202989 AGTGGAGTGAGTGAGAGAGCA 60.203 52.381 0.00 0.00 0.00 4.26
398 419 1.202114 GTGGAGTGAGTGAGAGAGCAG 59.798 57.143 0.00 0.00 0.00 4.24
399 420 0.173255 GGAGTGAGTGAGAGAGCAGC 59.827 60.000 0.00 0.00 0.00 5.25
400 421 0.887247 GAGTGAGTGAGAGAGCAGCA 59.113 55.000 0.00 0.00 0.00 4.41
401 422 0.602562 AGTGAGTGAGAGAGCAGCAC 59.397 55.000 0.00 0.00 0.00 4.40
402 423 0.389687 GTGAGTGAGAGAGCAGCACC 60.390 60.000 0.00 0.00 33.14 5.01
403 424 1.153862 GAGTGAGAGAGCAGCACCG 60.154 63.158 0.00 0.00 33.14 4.94
404 425 2.125753 GTGAGAGAGCAGCACCGG 60.126 66.667 0.00 0.00 0.00 5.28
405 426 4.074526 TGAGAGAGCAGCACCGGC 62.075 66.667 0.00 0.00 41.61 6.13
406 427 4.074526 GAGAGAGCAGCACCGGCA 62.075 66.667 0.00 0.00 44.61 5.69
407 428 3.382803 GAGAGAGCAGCACCGGCAT 62.383 63.158 0.00 0.00 44.61 4.40
408 429 2.894387 GAGAGCAGCACCGGCATC 60.894 66.667 0.00 0.00 44.61 3.91
409 430 3.382803 GAGAGCAGCACCGGCATCT 62.383 63.158 0.00 0.00 44.61 2.90
410 431 3.200593 GAGCAGCACCGGCATCTG 61.201 66.667 0.00 7.66 44.61 2.90
413 434 2.827190 CAGCACCGGCATCTGCAT 60.827 61.111 16.21 0.15 44.61 3.96
414 435 2.827190 AGCACCGGCATCTGCATG 60.827 61.111 16.21 0.00 44.61 4.06
415 436 3.896133 GCACCGGCATCTGCATGG 61.896 66.667 9.73 7.72 44.36 3.66
416 437 2.124612 CACCGGCATCTGCATGGA 60.125 61.111 16.64 0.00 44.36 3.41
417 438 1.750018 CACCGGCATCTGCATGGAA 60.750 57.895 16.64 0.00 44.36 3.53
418 439 1.452651 ACCGGCATCTGCATGGAAG 60.453 57.895 16.64 0.00 44.36 3.46
419 440 2.191513 CCGGCATCTGCATGGAAGG 61.192 63.158 4.33 0.00 44.36 3.46
420 441 1.153107 CGGCATCTGCATGGAAGGA 60.153 57.895 4.33 0.00 44.36 3.36
421 442 1.164662 CGGCATCTGCATGGAAGGAG 61.165 60.000 4.33 0.00 44.36 3.69
422 443 0.182061 GGCATCTGCATGGAAGGAGA 59.818 55.000 4.33 0.00 44.36 3.71
423 444 1.307097 GCATCTGCATGGAAGGAGAC 58.693 55.000 0.00 0.00 38.84 3.36
424 445 1.407851 GCATCTGCATGGAAGGAGACA 60.408 52.381 0.00 0.00 38.84 3.41
425 446 2.562635 CATCTGCATGGAAGGAGACAG 58.437 52.381 0.00 0.00 38.84 3.51
426 447 0.907486 TCTGCATGGAAGGAGACAGG 59.093 55.000 0.00 0.00 30.55 4.00
427 448 0.747283 CTGCATGGAAGGAGACAGGC 60.747 60.000 0.00 0.00 43.93 4.85
428 449 1.300963 GCATGGAAGGAGACAGGCA 59.699 57.895 0.00 0.00 43.22 4.75
429 450 0.747283 GCATGGAAGGAGACAGGCAG 60.747 60.000 0.00 0.00 43.22 4.85
430 451 0.747283 CATGGAAGGAGACAGGCAGC 60.747 60.000 0.00 0.00 0.00 5.25
431 452 1.919600 ATGGAAGGAGACAGGCAGCC 61.920 60.000 1.84 1.84 0.00 4.85
432 453 2.125350 GAAGGAGACAGGCAGCCG 60.125 66.667 5.55 3.56 0.00 5.52
433 454 4.400961 AAGGAGACAGGCAGCCGC 62.401 66.667 5.55 0.00 37.44 6.53
436 457 4.385405 GAGACAGGCAGCCGCTGT 62.385 66.667 21.29 5.81 38.60 4.40
437 458 4.694233 AGACAGGCAGCCGCTGTG 62.694 66.667 21.29 14.75 38.60 3.66
438 459 4.996434 GACAGGCAGCCGCTGTGT 62.996 66.667 21.29 17.76 37.80 3.72
439 460 3.589654 GACAGGCAGCCGCTGTGTA 62.590 63.158 21.29 0.00 36.01 2.90
440 461 3.121030 CAGGCAGCCGCTGTGTAC 61.121 66.667 21.29 9.76 38.60 2.90
441 462 4.394712 AGGCAGCCGCTGTGTACC 62.395 66.667 21.29 13.57 38.60 3.34
443 464 4.735132 GCAGCCGCTGTGTACCGA 62.735 66.667 21.29 0.00 33.43 4.69
444 465 2.809601 CAGCCGCTGTGTACCGAC 60.810 66.667 12.54 0.00 0.00 4.79
445 466 4.415332 AGCCGCTGTGTACCGACG 62.415 66.667 0.00 0.00 0.00 5.12
447 468 4.789075 CCGCTGTGTACCGACGGG 62.789 72.222 20.00 0.00 40.18 5.28
449 470 4.065281 GCTGTGTACCGACGGGCT 62.065 66.667 20.00 0.00 36.48 5.19
450 471 2.126071 CTGTGTACCGACGGGCTG 60.126 66.667 20.00 5.77 36.48 4.85
451 472 4.367023 TGTGTACCGACGGGCTGC 62.367 66.667 20.00 1.90 36.48 5.25
465 486 3.476646 CTGCGCGTGAGTGAGCTG 61.477 66.667 8.43 0.00 46.66 4.24
468 489 3.108289 CGCGTGAGTGAGCTGGTG 61.108 66.667 0.00 0.00 46.66 4.17
469 490 3.418068 GCGTGAGTGAGCTGGTGC 61.418 66.667 0.00 0.00 40.05 5.01
470 491 3.108289 CGTGAGTGAGCTGGTGCG 61.108 66.667 0.00 0.00 45.42 5.34
471 492 3.418068 GTGAGTGAGCTGGTGCGC 61.418 66.667 0.00 0.00 45.42 6.09
504 525 1.340308 TGCCATGTCACCCTCAGATTG 60.340 52.381 0.00 0.00 0.00 2.67
505 526 1.340405 GCCATGTCACCCTCAGATTGT 60.340 52.381 0.00 0.00 0.00 2.71
506 527 2.881403 GCCATGTCACCCTCAGATTGTT 60.881 50.000 0.00 0.00 0.00 2.83
547 575 2.213499 GAACAGTGGAGTGAGTGTTGG 58.787 52.381 0.00 0.00 39.18 3.77
555 583 3.245622 TGGAGTGAGTGTTGGGAGAGATA 60.246 47.826 0.00 0.00 0.00 1.98
579 607 1.300963 GCATGGAAGGAGACAGGCA 59.699 57.895 0.00 0.00 43.22 4.75
588 616 4.385405 AGACAGGCAGCCGCTGTC 62.385 66.667 21.30 21.30 42.10 3.51
737 798 1.997874 AGACTCCCACATGGCCTCC 60.998 63.158 3.32 0.00 0.00 4.30
739 800 3.813724 CTCCCACATGGCCTCCCC 61.814 72.222 3.32 0.00 0.00 4.81
742 803 3.671410 CCACATGGCCTCCCCCAA 61.671 66.667 3.32 0.00 38.61 4.12
774 846 4.384098 CCTCTCACATGCACCTACCATAAA 60.384 45.833 0.00 0.00 0.00 1.40
776 848 3.616219 TCACATGCACCTACCATAAACC 58.384 45.455 0.00 0.00 0.00 3.27
778 850 3.761218 CACATGCACCTACCATAAACCAA 59.239 43.478 0.00 0.00 0.00 3.67
782 854 6.013812 ACATGCACCTACCATAAACCAATTTT 60.014 34.615 0.00 0.00 0.00 1.82
783 855 6.031751 TGCACCTACCATAAACCAATTTTC 57.968 37.500 0.00 0.00 0.00 2.29
784 856 5.777732 TGCACCTACCATAAACCAATTTTCT 59.222 36.000 0.00 0.00 0.00 2.52
785 857 6.948886 TGCACCTACCATAAACCAATTTTCTA 59.051 34.615 0.00 0.00 0.00 2.10
786 858 7.094118 TGCACCTACCATAAACCAATTTTCTAC 60.094 37.037 0.00 0.00 0.00 2.59
787 859 7.469260 CACCTACCATAAACCAATTTTCTACG 58.531 38.462 0.00 0.00 0.00 3.51
788 860 6.600427 ACCTACCATAAACCAATTTTCTACGG 59.400 38.462 0.00 0.00 0.00 4.02
789 861 6.824704 CCTACCATAAACCAATTTTCTACGGA 59.175 38.462 0.00 0.00 0.00 4.69
790 862 6.753107 ACCATAAACCAATTTTCTACGGAG 57.247 37.500 0.00 0.00 0.00 4.63
1011 1105 2.204624 TCCTCCCTCCCTCCTCCA 60.205 66.667 0.00 0.00 0.00 3.86
1030 1124 4.074526 TGCTCGCCACTCTGCTCC 62.075 66.667 0.00 0.00 0.00 4.70
1035 1129 4.828925 GCCACTCTGCTCCGCTCC 62.829 72.222 0.00 0.00 0.00 4.70
1036 1130 4.504916 CCACTCTGCTCCGCTCCG 62.505 72.222 0.00 0.00 0.00 4.63
1039 1133 4.567385 CTCTGCTCCGCTCCGCTC 62.567 72.222 0.00 0.00 0.00 5.03
1042 1136 4.441695 TGCTCCGCTCCGCTCAAG 62.442 66.667 0.00 0.00 0.00 3.02
1051 1145 1.633852 CTCCGCTCAAGCAAGCAGAC 61.634 60.000 2.50 0.00 42.62 3.51
1124 1221 4.803426 GAGGTGACGAGCCTGGCG 62.803 72.222 13.96 2.09 36.29 5.69
1174 1271 4.639171 GGCCAACAACAACGCCGG 62.639 66.667 0.00 0.00 0.00 6.13
1178 1275 3.645975 AACAACAACGCCGGCTCG 61.646 61.111 26.68 12.89 0.00 5.03
1403 1500 1.071471 CCACAAGGACAAGTCGGCT 59.929 57.895 0.00 0.00 36.89 5.52
1644 1749 5.429957 TTTCTTTCTCTCTTCTTGCTTGC 57.570 39.130 0.00 0.00 0.00 4.01
1645 1750 4.348863 TCTTTCTCTCTTCTTGCTTGCT 57.651 40.909 0.00 0.00 0.00 3.91
1646 1751 4.712476 TCTTTCTCTCTTCTTGCTTGCTT 58.288 39.130 0.00 0.00 0.00 3.91
1647 1752 4.514441 TCTTTCTCTCTTCTTGCTTGCTTG 59.486 41.667 0.00 0.00 0.00 4.01
1648 1753 2.149578 TCTCTCTTCTTGCTTGCTTGC 58.850 47.619 0.00 0.00 0.00 4.01
1649 1754 2.152830 CTCTCTTCTTGCTTGCTTGCT 58.847 47.619 3.47 0.00 0.00 3.91
1650 1755 2.553172 CTCTCTTCTTGCTTGCTTGCTT 59.447 45.455 3.47 0.00 0.00 3.91
1651 1756 2.292569 TCTCTTCTTGCTTGCTTGCTTG 59.707 45.455 3.47 0.00 0.00 4.01
1652 1757 1.338973 TCTTCTTGCTTGCTTGCTTGG 59.661 47.619 3.47 0.00 0.00 3.61
1653 1758 1.068127 CTTCTTGCTTGCTTGCTTGGT 59.932 47.619 3.47 0.00 0.00 3.67
1654 1759 0.670162 TCTTGCTTGCTTGCTTGGTC 59.330 50.000 3.47 0.00 0.00 4.02
1655 1760 0.662374 CTTGCTTGCTTGCTTGGTCG 60.662 55.000 3.47 0.00 0.00 4.79
1656 1761 1.100463 TTGCTTGCTTGCTTGGTCGA 61.100 50.000 3.47 0.00 0.00 4.20
1657 1762 0.890542 TGCTTGCTTGCTTGGTCGAT 60.891 50.000 0.00 0.00 0.00 3.59
1658 1763 0.179179 GCTTGCTTGCTTGGTCGATC 60.179 55.000 0.00 0.00 0.00 3.69
1659 1764 0.449388 CTTGCTTGCTTGGTCGATCC 59.551 55.000 0.00 0.00 0.00 3.36
1660 1765 0.250684 TTGCTTGCTTGGTCGATCCA 60.251 50.000 0.00 0.00 45.60 3.41
1661 1766 0.035152 TGCTTGCTTGGTCGATCCAT 60.035 50.000 7.43 0.00 46.60 3.41
1662 1767 0.379669 GCTTGCTTGGTCGATCCATG 59.620 55.000 7.43 10.31 46.60 3.66
1663 1768 1.019673 CTTGCTTGGTCGATCCATGG 58.980 55.000 4.97 4.97 46.60 3.66
1664 1769 1.031571 TTGCTTGGTCGATCCATGGC 61.032 55.000 6.96 16.66 46.60 4.40
1665 1770 2.189499 GCTTGGTCGATCCATGGCC 61.189 63.158 6.96 2.14 46.60 5.36
1666 1771 1.224315 CTTGGTCGATCCATGGCCA 59.776 57.895 8.56 8.56 46.60 5.36
1667 1772 1.077787 TTGGTCGATCCATGGCCAC 60.078 57.895 8.16 0.00 46.60 5.01
1668 1773 2.588877 GGTCGATCCATGGCCACG 60.589 66.667 8.16 7.05 35.97 4.94
1669 1774 2.499205 GTCGATCCATGGCCACGA 59.501 61.111 8.16 9.95 0.00 4.35
1670 1775 1.592669 GTCGATCCATGGCCACGAG 60.593 63.158 21.29 0.00 33.82 4.18
1671 1776 2.058001 TCGATCCATGGCCACGAGT 61.058 57.895 8.16 0.00 0.00 4.18
1672 1777 1.153369 CGATCCATGGCCACGAGTT 60.153 57.895 8.16 0.00 0.00 3.01
1673 1778 1.154205 CGATCCATGGCCACGAGTTC 61.154 60.000 8.16 3.47 0.00 3.01
1674 1779 0.179000 GATCCATGGCCACGAGTTCT 59.821 55.000 8.16 0.00 0.00 3.01
1675 1780 0.620556 ATCCATGGCCACGAGTTCTT 59.379 50.000 8.16 0.00 0.00 2.52
1676 1781 0.321564 TCCATGGCCACGAGTTCTTG 60.322 55.000 8.16 0.00 0.00 3.02
1677 1782 1.503542 CATGGCCACGAGTTCTTGC 59.496 57.895 8.16 0.00 0.00 4.01
1678 1783 0.957395 CATGGCCACGAGTTCTTGCT 60.957 55.000 8.16 0.00 0.00 3.91
1687 1792 1.399471 CGAGTTCTTGCTCTTGCTTGC 60.399 52.381 0.00 0.00 40.48 4.01
1715 1820 0.820226 CTTGGATCTGGAGCTGACGA 59.180 55.000 0.00 0.00 0.00 4.20
1716 1821 1.205655 CTTGGATCTGGAGCTGACGAA 59.794 52.381 0.00 0.00 0.00 3.85
1722 1827 3.170791 TCTGGAGCTGACGAATGATTC 57.829 47.619 0.00 0.00 0.00 2.52
1971 2090 1.211457 GCATCAACTGGATCTGGAGGT 59.789 52.381 0.00 0.00 32.57 3.85
1985 2104 1.321074 GGAGGTCCGTCCGTCAGATT 61.321 60.000 0.00 0.00 41.99 2.40
1986 2105 0.100861 GAGGTCCGTCCGTCAGATTC 59.899 60.000 0.00 0.00 41.99 2.52
1987 2106 0.611062 AGGTCCGTCCGTCAGATTCA 60.611 55.000 0.00 0.00 41.99 2.57
1988 2107 0.179134 GGTCCGTCCGTCAGATTCAG 60.179 60.000 0.00 0.00 0.00 3.02
1989 2108 0.809385 GTCCGTCCGTCAGATTCAGA 59.191 55.000 0.00 0.00 0.00 3.27
1990 2109 1.405821 GTCCGTCCGTCAGATTCAGAT 59.594 52.381 0.00 0.00 0.00 2.90
1994 2113 2.542618 CGTCCGTCAGATTCAGATCCAG 60.543 54.545 0.00 0.00 32.44 3.86
2013 2132 3.006537 CCAGGAACGAGACTAACCAAAGA 59.993 47.826 0.00 0.00 0.00 2.52
2014 2133 3.988517 CAGGAACGAGACTAACCAAAGAC 59.011 47.826 0.00 0.00 0.00 3.01
2017 2136 1.336609 ACGAGACTAACCAAAGACGCC 60.337 52.381 0.00 0.00 0.00 5.68
2018 2137 1.336517 CGAGACTAACCAAAGACGCCA 60.337 52.381 0.00 0.00 0.00 5.69
2019 2138 2.674177 CGAGACTAACCAAAGACGCCAT 60.674 50.000 0.00 0.00 0.00 4.40
2020 2139 3.335579 GAGACTAACCAAAGACGCCATT 58.664 45.455 0.00 0.00 0.00 3.16
2021 2140 3.074412 AGACTAACCAAAGACGCCATTG 58.926 45.455 0.00 0.00 0.00 2.82
2022 2141 1.539827 ACTAACCAAAGACGCCATTGC 59.460 47.619 0.00 0.00 0.00 3.56
2023 2142 1.539388 CTAACCAAAGACGCCATTGCA 59.461 47.619 0.00 0.00 37.32 4.08
2024 2143 0.968405 AACCAAAGACGCCATTGCAT 59.032 45.000 0.00 0.00 37.32 3.96
2334 2453 3.907221 AGGCCTGCAAATACTCATGATT 58.093 40.909 3.11 0.00 0.00 2.57
2346 2465 6.862711 ATACTCATGATTTGCTCACTCATG 57.137 37.500 0.00 12.12 44.85 3.07
2351 2470 3.200483 TGATTTGCTCACTCATGATCCG 58.800 45.455 0.00 0.00 33.22 4.18
2374 2498 2.099592 CCATGGTTGGTTGATTGATCGG 59.900 50.000 2.57 0.00 38.30 4.18
2390 2514 4.368315 TGATCGGTTGATTGAGTAATCGG 58.632 43.478 0.00 0.00 44.55 4.18
2425 2549 6.841119 TGATCGGTTGATGAGTAAATTGTTG 58.159 36.000 0.00 0.00 34.09 3.33
2464 2591 4.154015 TCTGTGCATTTTTCTCACGTATGG 59.846 41.667 0.00 0.00 33.69 2.74
2465 2592 3.171277 GTGCATTTTTCTCACGTATGGC 58.829 45.455 0.00 0.00 0.00 4.40
2466 2593 2.163412 TGCATTTTTCTCACGTATGGCC 59.837 45.455 0.00 0.00 0.00 5.36
2467 2594 2.423538 GCATTTTTCTCACGTATGGCCT 59.576 45.455 3.32 0.00 0.00 5.19
2468 2595 3.487544 GCATTTTTCTCACGTATGGCCTC 60.488 47.826 3.32 0.00 0.00 4.70
2469 2596 2.004583 TTTTCTCACGTATGGCCTCG 57.995 50.000 3.32 9.18 0.00 4.63
2470 2597 0.459585 TTTCTCACGTATGGCCTCGC 60.460 55.000 3.32 0.00 0.00 5.03
2471 2598 1.320344 TTCTCACGTATGGCCTCGCT 61.320 55.000 3.32 0.00 0.00 4.93
2599 2727 0.110419 TGATTCTTTTCGGCGTTGCG 60.110 50.000 6.85 0.00 0.00 4.85
2610 2738 0.373716 GGCGTTGCGTTGATCCTTAG 59.626 55.000 0.00 0.00 0.00 2.18
2611 2739 1.076332 GCGTTGCGTTGATCCTTAGT 58.924 50.000 0.00 0.00 0.00 2.24
2612 2740 2.264813 GCGTTGCGTTGATCCTTAGTA 58.735 47.619 0.00 0.00 0.00 1.82
2645 2777 9.838975 TGTTCTTGTAATTATATGTGCTGTTTG 57.161 29.630 0.00 0.00 0.00 2.93
2646 2778 8.798153 GTTCTTGTAATTATATGTGCTGTTTGC 58.202 33.333 0.00 0.00 43.25 3.68
2647 2779 7.479980 TCTTGTAATTATATGTGCTGTTTGCC 58.520 34.615 0.00 0.00 42.00 4.52
2648 2780 6.765915 TGTAATTATATGTGCTGTTTGCCA 57.234 33.333 0.00 0.00 42.00 4.92
2649 2781 7.163001 TGTAATTATATGTGCTGTTTGCCAA 57.837 32.000 0.00 0.00 42.00 4.52
2650 2782 7.780064 TGTAATTATATGTGCTGTTTGCCAAT 58.220 30.769 0.00 0.00 42.00 3.16
2651 2783 7.920151 TGTAATTATATGTGCTGTTTGCCAATC 59.080 33.333 0.00 0.00 42.00 2.67
2652 2784 3.806625 ATATGTGCTGTTTGCCAATCC 57.193 42.857 0.00 0.00 42.00 3.01
2653 2785 0.609662 ATGTGCTGTTTGCCAATCCC 59.390 50.000 0.00 0.00 42.00 3.85
2654 2786 0.469705 TGTGCTGTTTGCCAATCCCT 60.470 50.000 0.00 0.00 42.00 4.20
2655 2787 0.244721 GTGCTGTTTGCCAATCCCTC 59.755 55.000 0.00 0.00 42.00 4.30
2656 2788 1.243342 TGCTGTTTGCCAATCCCTCG 61.243 55.000 0.00 0.00 42.00 4.63
2657 2789 0.960364 GCTGTTTGCCAATCCCTCGA 60.960 55.000 0.00 0.00 35.15 4.04
2658 2790 1.533625 CTGTTTGCCAATCCCTCGAA 58.466 50.000 0.00 0.00 0.00 3.71
2659 2791 1.470098 CTGTTTGCCAATCCCTCGAAG 59.530 52.381 0.00 0.00 0.00 3.79
2660 2792 1.073125 TGTTTGCCAATCCCTCGAAGA 59.927 47.619 0.00 0.00 0.00 2.87
2661 2793 2.159382 GTTTGCCAATCCCTCGAAGAA 58.841 47.619 0.00 0.00 34.09 2.52
2662 2794 2.556622 GTTTGCCAATCCCTCGAAGAAA 59.443 45.455 0.00 0.00 34.09 2.52
2663 2795 2.577606 TGCCAATCCCTCGAAGAAAA 57.422 45.000 0.00 0.00 34.09 2.29
2667 2799 3.774066 CCAATCCCTCGAAGAAAAATGC 58.226 45.455 0.00 0.00 34.09 3.56
2702 2834 3.560481 TGCAAAGCAAACCAAATGACATG 59.440 39.130 0.00 0.00 34.76 3.21
2703 2835 3.808726 GCAAAGCAAACCAAATGACATGA 59.191 39.130 0.00 0.00 0.00 3.07
2704 2836 4.084223 GCAAAGCAAACCAAATGACATGAG 60.084 41.667 0.00 0.00 0.00 2.90
2706 2838 2.028748 AGCAAACCAAATGACATGAGGC 60.029 45.455 0.00 0.00 0.00 4.70
2740 2873 3.430333 TTTGTTGCGAGTTTTTCCTCC 57.570 42.857 0.00 0.00 0.00 4.30
2742 2875 2.650322 TGTTGCGAGTTTTTCCTCCTT 58.350 42.857 0.00 0.00 0.00 3.36
2748 2883 5.313712 TGCGAGTTTTTCCTCCTTTTCTAT 58.686 37.500 0.00 0.00 0.00 1.98
2749 2884 5.411669 TGCGAGTTTTTCCTCCTTTTCTATC 59.588 40.000 0.00 0.00 0.00 2.08
2772 2907 4.470334 AACAAGTTGTTGCTCCATTTGT 57.530 36.364 20.26 0.00 39.45 2.83
2774 2909 5.186996 ACAAGTTGTTGCTCCATTTGTAG 57.813 39.130 1.64 0.00 37.14 2.74
2777 2912 4.460263 AGTTGTTGCTCCATTTGTAGTCA 58.540 39.130 0.00 0.00 0.00 3.41
2784 2919 5.559770 TGCTCCATTTGTAGTCATCAAGAA 58.440 37.500 0.00 0.00 0.00 2.52
2786 2921 6.072508 TGCTCCATTTGTAGTCATCAAGAAAC 60.073 38.462 0.00 0.00 0.00 2.78
2803 2938 5.146010 AGAAACAAAAACTTGTTGCTCCA 57.854 34.783 5.55 0.00 45.27 3.86
2804 2939 4.929211 AGAAACAAAAACTTGTTGCTCCAC 59.071 37.500 5.55 0.00 45.27 4.02
2831 2966 5.062308 GCAACATCGTGTTTGTTAACCAAAA 59.938 36.000 2.48 0.00 44.36 2.44
2840 2975 7.514435 CGTGTTTGTTAACCAAAAATGCTAGTG 60.514 37.037 2.48 0.00 44.36 2.74
2844 2979 8.586570 TTGTTAACCAAAAATGCTAGTGATTG 57.413 30.769 2.48 0.00 0.00 2.67
2850 2985 5.575606 CCAAAAATGCTAGTGATTGCTCTTG 59.424 40.000 0.00 0.00 0.00 3.02
2861 2996 6.002704 AGTGATTGCTCTTGAAGATTGAAGT 58.997 36.000 0.00 0.00 0.00 3.01
2863 2998 7.118971 AGTGATTGCTCTTGAAGATTGAAGTAC 59.881 37.037 0.00 0.00 0.00 2.73
2865 3000 7.663081 TGATTGCTCTTGAAGATTGAAGTACTT 59.337 33.333 8.13 8.13 0.00 2.24
2866 3001 9.155975 GATTGCTCTTGAAGATTGAAGTACTTA 57.844 33.333 8.42 0.00 0.00 2.24
2867 3002 8.539770 TTGCTCTTGAAGATTGAAGTACTTAG 57.460 34.615 8.42 0.00 0.00 2.18
2869 3004 6.816140 GCTCTTGAAGATTGAAGTACTTAGCT 59.184 38.462 8.42 0.00 0.00 3.32
2870 3005 7.976734 GCTCTTGAAGATTGAAGTACTTAGCTA 59.023 37.037 8.42 0.00 0.00 3.32
2871 3006 9.296400 CTCTTGAAGATTGAAGTACTTAGCTAC 57.704 37.037 8.42 0.00 0.00 3.58
2872 3007 9.026121 TCTTGAAGATTGAAGTACTTAGCTACT 57.974 33.333 8.42 2.40 0.00 2.57
2873 3008 9.646427 CTTGAAGATTGAAGTACTTAGCTACTT 57.354 33.333 8.42 10.45 39.26 2.24
2895 3030 2.117156 CCGGGGAATGCAGCTCTTG 61.117 63.158 0.00 0.00 0.00 3.02
2919 3054 8.317891 TGACGATAACATTTCTTCTAAGCAAA 57.682 30.769 0.00 0.00 0.00 3.68
2922 3057 9.774742 ACGATAACATTTCTTCTAAGCAAATTC 57.225 29.630 0.00 0.00 0.00 2.17
2949 3084 2.550830 TGAGGACTTGCTCAACCTTC 57.449 50.000 0.00 0.00 32.53 3.46
2956 3091 3.119096 GCTCAACCTTCGTCGCCC 61.119 66.667 0.00 0.00 0.00 6.13
2958 3093 3.952628 CTCAACCTTCGTCGCCCCC 62.953 68.421 0.00 0.00 0.00 5.40
2960 3095 3.562232 AACCTTCGTCGCCCCCAA 61.562 61.111 0.00 0.00 0.00 4.12
2980 3115 4.262164 CCAAGCCTTGTTTGTTTGAGCTAT 60.262 41.667 3.37 0.00 0.00 2.97
2992 3136 1.143183 GAGCTATGGTTTCGGCCGA 59.857 57.895 27.28 27.28 0.00 5.54
2995 3139 2.014594 CTATGGTTTCGGCCGAAGC 58.985 57.895 37.62 37.62 35.38 3.86
2996 3140 1.762222 CTATGGTTTCGGCCGAAGCG 61.762 60.000 37.42 24.93 41.24 4.68
3025 3169 1.199097 CGGTGGCAAAGATTTTAGCGT 59.801 47.619 0.00 0.00 0.00 5.07
3070 3214 0.548510 AGCTATCAAAGGGTGGCCTC 59.451 55.000 3.32 0.00 0.00 4.70
3072 3216 1.340991 GCTATCAAAGGGTGGCCTCAA 60.341 52.381 3.32 0.00 0.00 3.02
3076 4738 0.178964 CAAAGGGTGGCCTCAAAGGA 60.179 55.000 3.32 0.00 37.67 3.36
3104 4766 1.935327 GCCTCGTGCTCGGTAGAAGT 61.935 60.000 8.49 0.00 36.87 3.01
3112 4774 1.669779 GCTCGGTAGAAGTTAGAGCGA 59.330 52.381 9.60 9.60 43.62 4.93
3219 4881 1.394227 GACGATACTCGGATAGGCTCG 59.606 57.143 0.00 0.00 45.59 5.03
3244 4906 1.112113 GGATCGACCAAGTGAGCCTA 58.888 55.000 0.00 0.00 37.68 3.93
3258 4920 4.134563 GTGAGCCTACACTGGAAGAAAAA 58.865 43.478 0.00 0.00 37.43 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.910994 GGAGGAGCATGGCATGGC 60.911 66.667 27.48 19.20 0.00 4.40
7 8 1.826921 GTGGAGGAGCATGGCATGG 60.827 63.158 27.48 10.64 0.00 3.66
8 9 0.681887 TTGTGGAGGAGCATGGCATG 60.682 55.000 22.99 22.99 0.00 4.06
9 10 0.682209 GTTGTGGAGGAGCATGGCAT 60.682 55.000 0.00 0.00 0.00 4.40
10 11 1.303561 GTTGTGGAGGAGCATGGCA 60.304 57.895 0.00 0.00 0.00 4.92
11 12 1.303561 TGTTGTGGAGGAGCATGGC 60.304 57.895 0.00 0.00 0.00 4.40
12 13 0.325933 TCTGTTGTGGAGGAGCATGG 59.674 55.000 0.00 0.00 0.00 3.66
13 14 1.002888 AGTCTGTTGTGGAGGAGCATG 59.997 52.381 0.00 0.00 0.00 4.06
14 15 1.002888 CAGTCTGTTGTGGAGGAGCAT 59.997 52.381 0.00 0.00 0.00 3.79
15 16 0.394192 CAGTCTGTTGTGGAGGAGCA 59.606 55.000 0.00 0.00 0.00 4.26
16 17 0.394565 ACAGTCTGTTGTGGAGGAGC 59.605 55.000 0.00 0.00 0.00 4.70
17 18 2.160822 CACAGTCTGTTGTGGAGGAG 57.839 55.000 1.67 0.00 43.65 3.69
24 25 1.206132 TGAACCGACACAGTCTGTTGT 59.794 47.619 1.67 5.31 39.38 3.32
25 26 1.934589 TGAACCGACACAGTCTGTTG 58.065 50.000 1.67 1.96 39.38 3.33
26 27 2.910688 ATGAACCGACACAGTCTGTT 57.089 45.000 1.67 6.65 41.30 3.16
27 28 2.910688 AATGAACCGACACAGTCTGT 57.089 45.000 0.00 0.00 31.71 3.41
28 29 3.130633 TGAAATGAACCGACACAGTCTG 58.869 45.455 0.00 0.00 0.00 3.51
29 30 3.393800 CTGAAATGAACCGACACAGTCT 58.606 45.455 0.00 0.00 0.00 3.24
30 31 2.096218 GCTGAAATGAACCGACACAGTC 60.096 50.000 0.00 0.00 0.00 3.51
31 32 1.873591 GCTGAAATGAACCGACACAGT 59.126 47.619 0.00 0.00 0.00 3.55
32 33 2.146342 AGCTGAAATGAACCGACACAG 58.854 47.619 0.00 0.00 0.00 3.66
33 34 2.143122 GAGCTGAAATGAACCGACACA 58.857 47.619 0.00 0.00 0.00 3.72
34 35 2.413453 GAGAGCTGAAATGAACCGACAC 59.587 50.000 0.00 0.00 0.00 3.67
35 36 2.300152 AGAGAGCTGAAATGAACCGACA 59.700 45.455 0.00 0.00 0.00 4.35
36 37 2.670414 CAGAGAGCTGAAATGAACCGAC 59.330 50.000 0.00 0.00 45.17 4.79
37 38 2.300152 ACAGAGAGCTGAAATGAACCGA 59.700 45.455 0.00 0.00 45.17 4.69
38 39 2.414481 CACAGAGAGCTGAAATGAACCG 59.586 50.000 0.00 0.00 45.17 4.44
39 40 3.668447 TCACAGAGAGCTGAAATGAACC 58.332 45.455 0.00 0.00 45.17 3.62
40 41 4.437121 GCATCACAGAGAGCTGAAATGAAC 60.437 45.833 0.00 0.00 45.17 3.18
41 42 3.688185 GCATCACAGAGAGCTGAAATGAA 59.312 43.478 0.00 0.00 45.17 2.57
42 43 3.268330 GCATCACAGAGAGCTGAAATGA 58.732 45.455 0.00 0.00 45.17 2.57
43 44 2.355132 GGCATCACAGAGAGCTGAAATG 59.645 50.000 0.00 0.00 45.17 2.32
44 45 2.641305 GGCATCACAGAGAGCTGAAAT 58.359 47.619 0.00 0.00 45.17 2.17
45 46 1.339438 GGGCATCACAGAGAGCTGAAA 60.339 52.381 0.00 0.00 45.17 2.69
46 47 0.251354 GGGCATCACAGAGAGCTGAA 59.749 55.000 0.00 0.00 45.17 3.02
47 48 0.906282 TGGGCATCACAGAGAGCTGA 60.906 55.000 0.00 0.00 45.17 4.26
49 50 0.035630 GTTGGGCATCACAGAGAGCT 60.036 55.000 0.00 0.00 0.00 4.09
50 51 0.035630 AGTTGGGCATCACAGAGAGC 60.036 55.000 0.00 0.00 0.00 4.09
51 52 1.406614 GGAGTTGGGCATCACAGAGAG 60.407 57.143 0.00 0.00 0.00 3.20
52 53 0.615331 GGAGTTGGGCATCACAGAGA 59.385 55.000 0.00 0.00 0.00 3.10
53 54 0.742281 CGGAGTTGGGCATCACAGAG 60.742 60.000 0.00 0.00 0.00 3.35
54 55 1.191489 TCGGAGTTGGGCATCACAGA 61.191 55.000 0.00 0.00 0.00 3.41
55 56 0.321564 TTCGGAGTTGGGCATCACAG 60.322 55.000 0.00 0.00 0.00 3.66
56 57 0.327924 ATTCGGAGTTGGGCATCACA 59.672 50.000 0.00 0.00 0.00 3.58
57 58 1.133025 CAATTCGGAGTTGGGCATCAC 59.867 52.381 5.41 0.00 0.00 3.06
58 59 1.004161 TCAATTCGGAGTTGGGCATCA 59.996 47.619 12.51 0.00 0.00 3.07
59 60 1.750193 TCAATTCGGAGTTGGGCATC 58.250 50.000 12.51 0.00 0.00 3.91
60 61 2.026641 CATCAATTCGGAGTTGGGCAT 58.973 47.619 12.51 0.00 0.00 4.40
61 62 1.462616 CATCAATTCGGAGTTGGGCA 58.537 50.000 12.51 0.00 0.00 5.36
62 63 0.740737 CCATCAATTCGGAGTTGGGC 59.259 55.000 12.51 0.00 0.00 5.36
63 64 0.740737 GCCATCAATTCGGAGTTGGG 59.259 55.000 12.51 8.35 0.00 4.12
64 65 1.133025 GTGCCATCAATTCGGAGTTGG 59.867 52.381 12.51 0.00 0.00 3.77
65 66 2.086869 AGTGCCATCAATTCGGAGTTG 58.913 47.619 6.89 6.89 0.00 3.16
66 67 2.496899 AGTGCCATCAATTCGGAGTT 57.503 45.000 0.00 0.00 0.00 3.01
67 68 3.845781 ATAGTGCCATCAATTCGGAGT 57.154 42.857 0.00 0.00 0.00 3.85
68 69 3.879295 ACAATAGTGCCATCAATTCGGAG 59.121 43.478 0.00 0.00 0.00 4.63
69 70 3.884895 ACAATAGTGCCATCAATTCGGA 58.115 40.909 0.00 0.00 0.00 4.55
70 71 4.637483 AACAATAGTGCCATCAATTCGG 57.363 40.909 0.00 0.00 0.00 4.30
71 72 6.958255 TGATAACAATAGTGCCATCAATTCG 58.042 36.000 5.18 0.00 29.69 3.34
72 73 7.327761 GCATGATAACAATAGTGCCATCAATTC 59.672 37.037 10.24 1.98 34.00 2.17
73 74 7.149973 GCATGATAACAATAGTGCCATCAATT 58.850 34.615 10.24 0.00 34.00 2.32
74 75 6.265876 TGCATGATAACAATAGTGCCATCAAT 59.734 34.615 10.24 0.22 34.00 2.57
75 76 5.593502 TGCATGATAACAATAGTGCCATCAA 59.406 36.000 10.24 0.00 34.00 2.57
76 77 5.008911 GTGCATGATAACAATAGTGCCATCA 59.991 40.000 9.02 9.02 34.50 3.07
77 78 5.240183 AGTGCATGATAACAATAGTGCCATC 59.760 40.000 0.00 0.00 0.00 3.51
78 79 5.135383 AGTGCATGATAACAATAGTGCCAT 58.865 37.500 0.00 0.00 0.00 4.40
79 80 4.525996 AGTGCATGATAACAATAGTGCCA 58.474 39.130 0.00 0.00 0.00 4.92
80 81 4.023707 GGAGTGCATGATAACAATAGTGCC 60.024 45.833 0.00 0.00 0.00 5.01
81 82 4.023707 GGGAGTGCATGATAACAATAGTGC 60.024 45.833 0.00 0.00 0.00 4.40
82 83 5.371526 AGGGAGTGCATGATAACAATAGTG 58.628 41.667 0.00 0.00 0.00 2.74
83 84 5.455326 GGAGGGAGTGCATGATAACAATAGT 60.455 44.000 0.00 0.00 0.00 2.12
84 85 4.999950 GGAGGGAGTGCATGATAACAATAG 59.000 45.833 0.00 0.00 0.00 1.73
85 86 4.503123 CGGAGGGAGTGCATGATAACAATA 60.503 45.833 0.00 0.00 0.00 1.90
86 87 3.745480 CGGAGGGAGTGCATGATAACAAT 60.745 47.826 0.00 0.00 0.00 2.71
87 88 2.419990 CGGAGGGAGTGCATGATAACAA 60.420 50.000 0.00 0.00 0.00 2.83
88 89 1.138859 CGGAGGGAGTGCATGATAACA 59.861 52.381 0.00 0.00 0.00 2.41
89 90 1.139058 ACGGAGGGAGTGCATGATAAC 59.861 52.381 0.00 0.00 0.00 1.89
90 91 1.496060 ACGGAGGGAGTGCATGATAA 58.504 50.000 0.00 0.00 0.00 1.75
91 92 1.412710 GAACGGAGGGAGTGCATGATA 59.587 52.381 0.00 0.00 0.00 2.15
92 93 0.179000 GAACGGAGGGAGTGCATGAT 59.821 55.000 0.00 0.00 0.00 2.45
93 94 0.904865 AGAACGGAGGGAGTGCATGA 60.905 55.000 0.00 0.00 0.00 3.07
94 95 0.824109 TAGAACGGAGGGAGTGCATG 59.176 55.000 0.00 0.00 0.00 4.06
95 96 0.824759 GTAGAACGGAGGGAGTGCAT 59.175 55.000 0.00 0.00 0.00 3.96
96 97 0.541063 TGTAGAACGGAGGGAGTGCA 60.541 55.000 0.00 0.00 0.00 4.57
97 98 0.824759 ATGTAGAACGGAGGGAGTGC 59.175 55.000 0.00 0.00 0.00 4.40
98 99 4.159879 ACTTAATGTAGAACGGAGGGAGTG 59.840 45.833 0.00 0.00 0.00 3.51
99 100 4.159879 CACTTAATGTAGAACGGAGGGAGT 59.840 45.833 0.00 0.00 0.00 3.85
100 101 4.159879 ACACTTAATGTAGAACGGAGGGAG 59.840 45.833 0.00 0.00 40.88 4.30
101 102 4.091549 ACACTTAATGTAGAACGGAGGGA 58.908 43.478 0.00 0.00 40.88 4.20
102 103 4.467198 ACACTTAATGTAGAACGGAGGG 57.533 45.455 0.00 0.00 40.88 4.30
103 104 5.235516 ACAACACTTAATGTAGAACGGAGG 58.764 41.667 0.00 0.00 42.31 4.30
132 133 7.115947 GTCGCTGATTTAGTACAACTTTGTAGT 59.884 37.037 12.86 12.86 46.14 2.73
133 134 7.115805 TGTCGCTGATTTAGTACAACTTTGTAG 59.884 37.037 1.96 0.00 43.67 2.74
134 135 6.924612 TGTCGCTGATTTAGTACAACTTTGTA 59.075 34.615 0.00 0.00 42.35 2.41
135 136 5.756347 TGTCGCTGATTTAGTACAACTTTGT 59.244 36.000 0.00 0.00 44.86 2.83
136 137 6.071463 GTGTCGCTGATTTAGTACAACTTTG 58.929 40.000 0.00 0.00 0.00 2.77
169 171 9.347240 CCTACTCATTTTGGATATGACATTTCT 57.653 33.333 5.95 0.00 0.00 2.52
173 175 9.872684 ATTTCCTACTCATTTTGGATATGACAT 57.127 29.630 0.00 0.00 0.00 3.06
180 182 6.659824 ACCGTATTTCCTACTCATTTTGGAT 58.340 36.000 0.00 0.00 0.00 3.41
192 198 5.744666 GCATTTTGCTACCGTATTTCCTA 57.255 39.130 0.00 0.00 40.96 2.94
220 226 2.032302 ACGCACGCACAAAAGATAAACA 59.968 40.909 0.00 0.00 0.00 2.83
223 229 1.661743 GCACGCACGCACAAAAGATAA 60.662 47.619 0.00 0.00 0.00 1.75
224 230 0.110419 GCACGCACGCACAAAAGATA 60.110 50.000 0.00 0.00 0.00 1.98
225 231 1.370414 GCACGCACGCACAAAAGAT 60.370 52.632 0.00 0.00 0.00 2.40
226 232 2.024022 GCACGCACGCACAAAAGA 59.976 55.556 0.00 0.00 0.00 2.52
227 233 3.378042 CGCACGCACGCACAAAAG 61.378 61.111 0.00 0.00 0.00 2.27
228 234 4.167359 ACGCACGCACGCACAAAA 62.167 55.556 0.00 0.00 36.19 2.44
229 235 4.877882 CACGCACGCACGCACAAA 62.878 61.111 0.00 0.00 36.19 2.83
247 253 3.716006 CAACACCGAGCCAGCACG 61.716 66.667 2.32 2.32 0.00 5.34
248 254 3.357079 CCAACACCGAGCCAGCAC 61.357 66.667 0.00 0.00 0.00 4.40
249 255 3.872603 ACCAACACCGAGCCAGCA 61.873 61.111 0.00 0.00 0.00 4.41
250 256 3.357079 CACCAACACCGAGCCAGC 61.357 66.667 0.00 0.00 0.00 4.85
251 257 0.606401 AATCACCAACACCGAGCCAG 60.606 55.000 0.00 0.00 0.00 4.85
252 258 0.605319 GAATCACCAACACCGAGCCA 60.605 55.000 0.00 0.00 0.00 4.75
253 259 0.321653 AGAATCACCAACACCGAGCC 60.322 55.000 0.00 0.00 0.00 4.70
260 266 2.363306 ACCTTGCAGAATCACCAACA 57.637 45.000 0.00 0.00 0.00 3.33
282 288 2.239654 TCCCTTCTGCTGGTTCCTATTG 59.760 50.000 0.00 0.00 0.00 1.90
283 289 2.562296 TCCCTTCTGCTGGTTCCTATT 58.438 47.619 0.00 0.00 0.00 1.73
285 291 2.119495 GATCCCTTCTGCTGGTTCCTA 58.881 52.381 0.00 0.00 0.00 2.94
294 300 1.316651 GCATCCTTGATCCCTTCTGC 58.683 55.000 0.00 0.00 0.00 4.26
295 301 1.139654 TCGCATCCTTGATCCCTTCTG 59.860 52.381 0.00 0.00 0.00 3.02
296 302 1.415659 CTCGCATCCTTGATCCCTTCT 59.584 52.381 0.00 0.00 0.00 2.85
300 321 0.883814 CTGCTCGCATCCTTGATCCC 60.884 60.000 0.00 0.00 0.00 3.85
304 325 2.664398 TGCTGCTCGCATCCTTGA 59.336 55.556 0.00 0.00 45.47 3.02
312 333 1.728426 CAAGTGCTTTGCTGCTCGC 60.728 57.895 0.00 1.27 39.77 5.03
320 341 2.129607 GTTGACATGGCAAGTGCTTTG 58.870 47.619 16.10 4.14 41.70 2.77
321 342 1.069049 GGTTGACATGGCAAGTGCTTT 59.931 47.619 16.10 0.00 41.70 3.51
322 343 0.675633 GGTTGACATGGCAAGTGCTT 59.324 50.000 16.10 0.00 41.70 3.91
323 344 0.178981 AGGTTGACATGGCAAGTGCT 60.179 50.000 16.10 0.00 41.70 4.40
324 345 0.242017 GAGGTTGACATGGCAAGTGC 59.758 55.000 16.10 2.57 41.14 4.40
325 346 1.538512 CTGAGGTTGACATGGCAAGTG 59.461 52.381 16.10 0.00 0.00 3.16
326 347 1.421268 TCTGAGGTTGACATGGCAAGT 59.579 47.619 16.10 4.77 0.00 3.16
327 348 2.189594 TCTGAGGTTGACATGGCAAG 57.810 50.000 16.10 1.84 0.00 4.01
328 349 2.821378 CAATCTGAGGTTGACATGGCAA 59.179 45.455 10.79 10.79 0.00 4.52
329 350 2.224843 ACAATCTGAGGTTGACATGGCA 60.225 45.455 13.17 0.00 0.00 4.92
330 351 2.440409 ACAATCTGAGGTTGACATGGC 58.560 47.619 13.17 0.00 0.00 4.40
331 352 4.074259 TGAACAATCTGAGGTTGACATGG 58.926 43.478 13.17 0.00 0.00 3.66
332 353 4.155462 CCTGAACAATCTGAGGTTGACATG 59.845 45.833 13.17 5.57 0.00 3.21
333 354 4.330250 CCTGAACAATCTGAGGTTGACAT 58.670 43.478 13.17 0.00 0.00 3.06
334 355 3.743521 CCTGAACAATCTGAGGTTGACA 58.256 45.455 13.17 10.53 0.00 3.58
335 356 2.485814 GCCTGAACAATCTGAGGTTGAC 59.514 50.000 13.17 6.47 0.00 3.18
336 357 2.553028 GGCCTGAACAATCTGAGGTTGA 60.553 50.000 13.17 0.00 0.00 3.18
337 358 1.815003 GGCCTGAACAATCTGAGGTTG 59.185 52.381 3.46 3.46 0.00 3.77
338 359 1.272147 GGGCCTGAACAATCTGAGGTT 60.272 52.381 0.84 0.00 0.00 3.50
339 360 0.329596 GGGCCTGAACAATCTGAGGT 59.670 55.000 0.84 0.00 0.00 3.85
340 361 0.745845 CGGGCCTGAACAATCTGAGG 60.746 60.000 5.28 0.00 0.00 3.86
341 362 0.745845 CCGGGCCTGAACAATCTGAG 60.746 60.000 15.09 0.00 0.00 3.35
342 363 1.299648 CCGGGCCTGAACAATCTGA 59.700 57.895 15.09 0.00 0.00 3.27
343 364 1.750399 CCCGGGCCTGAACAATCTG 60.750 63.158 15.09 0.00 0.00 2.90
344 365 2.677228 CCCGGGCCTGAACAATCT 59.323 61.111 15.09 0.00 0.00 2.40
345 366 3.140814 GCCCGGGCCTGAACAATC 61.141 66.667 36.64 2.25 34.56 2.67
361 382 2.743928 CTGTTCACCGCCTCTGGC 60.744 66.667 0.00 0.00 46.75 4.85
362 383 1.669115 CACTGTTCACCGCCTCTGG 60.669 63.158 0.00 0.00 0.00 3.86
363 384 1.669115 CCACTGTTCACCGCCTCTG 60.669 63.158 0.00 0.00 0.00 3.35
364 385 1.821061 CTCCACTGTTCACCGCCTCT 61.821 60.000 0.00 0.00 0.00 3.69
365 386 1.374758 CTCCACTGTTCACCGCCTC 60.375 63.158 0.00 0.00 0.00 4.70
366 387 2.140792 ACTCCACTGTTCACCGCCT 61.141 57.895 0.00 0.00 0.00 5.52
367 388 1.961277 CACTCCACTGTTCACCGCC 60.961 63.158 0.00 0.00 0.00 6.13
368 389 0.946221 CTCACTCCACTGTTCACCGC 60.946 60.000 0.00 0.00 0.00 5.68
369 390 0.389391 ACTCACTCCACTGTTCACCG 59.611 55.000 0.00 0.00 0.00 4.94
370 391 1.412710 TCACTCACTCCACTGTTCACC 59.587 52.381 0.00 0.00 0.00 4.02
371 392 2.362397 TCTCACTCACTCCACTGTTCAC 59.638 50.000 0.00 0.00 0.00 3.18
372 393 2.625314 CTCTCACTCACTCCACTGTTCA 59.375 50.000 0.00 0.00 0.00 3.18
373 394 2.887783 TCTCTCACTCACTCCACTGTTC 59.112 50.000 0.00 0.00 0.00 3.18
374 395 2.890311 CTCTCTCACTCACTCCACTGTT 59.110 50.000 0.00 0.00 0.00 3.16
375 396 2.513753 CTCTCTCACTCACTCCACTGT 58.486 52.381 0.00 0.00 0.00 3.55
376 397 1.202114 GCTCTCTCACTCACTCCACTG 59.798 57.143 0.00 0.00 0.00 3.66
377 398 1.202989 TGCTCTCTCACTCACTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
378 399 1.202114 CTGCTCTCTCACTCACTCCAC 59.798 57.143 0.00 0.00 0.00 4.02
379 400 1.543607 CTGCTCTCTCACTCACTCCA 58.456 55.000 0.00 0.00 0.00 3.86
380 401 0.173255 GCTGCTCTCTCACTCACTCC 59.827 60.000 0.00 0.00 0.00 3.85
381 402 0.887247 TGCTGCTCTCTCACTCACTC 59.113 55.000 0.00 0.00 0.00 3.51
382 403 0.602562 GTGCTGCTCTCTCACTCACT 59.397 55.000 0.00 0.00 0.00 3.41
383 404 0.389687 GGTGCTGCTCTCTCACTCAC 60.390 60.000 0.00 0.00 0.00 3.51
384 405 1.871126 CGGTGCTGCTCTCTCACTCA 61.871 60.000 0.00 0.00 0.00 3.41
385 406 1.153862 CGGTGCTGCTCTCTCACTC 60.154 63.158 0.00 0.00 0.00 3.51
386 407 2.644212 CCGGTGCTGCTCTCTCACT 61.644 63.158 0.00 0.00 0.00 3.41
387 408 2.125753 CCGGTGCTGCTCTCTCAC 60.126 66.667 0.00 0.00 0.00 3.51
388 409 4.074526 GCCGGTGCTGCTCTCTCA 62.075 66.667 1.90 0.00 33.53 3.27
389 410 3.382803 ATGCCGGTGCTGCTCTCTC 62.383 63.158 1.90 0.00 38.71 3.20
390 411 3.382803 GATGCCGGTGCTGCTCTCT 62.383 63.158 1.90 0.00 38.71 3.10
391 412 2.894387 GATGCCGGTGCTGCTCTC 60.894 66.667 1.90 0.00 38.71 3.20
392 413 3.397439 AGATGCCGGTGCTGCTCT 61.397 61.111 1.90 0.00 38.71 4.09
393 414 3.200593 CAGATGCCGGTGCTGCTC 61.201 66.667 1.90 0.00 38.71 4.26
396 417 2.827190 ATGCAGATGCCGGTGCTG 60.827 61.111 15.00 14.30 40.54 4.41
397 418 2.827190 CATGCAGATGCCGGTGCT 60.827 61.111 15.00 1.93 40.54 4.40
398 419 3.896133 CCATGCAGATGCCGGTGC 61.896 66.667 1.90 5.41 41.18 5.01
399 420 1.721664 CTTCCATGCAGATGCCGGTG 61.722 60.000 1.90 0.00 41.18 4.94
400 421 1.452651 CTTCCATGCAGATGCCGGT 60.453 57.895 1.90 0.00 41.18 5.28
401 422 2.191513 CCTTCCATGCAGATGCCGG 61.192 63.158 0.00 0.00 41.18 6.13
402 423 1.153107 TCCTTCCATGCAGATGCCG 60.153 57.895 1.72 0.00 41.18 5.69
403 424 0.182061 TCTCCTTCCATGCAGATGCC 59.818 55.000 1.72 0.00 41.18 4.40
404 425 1.307097 GTCTCCTTCCATGCAGATGC 58.693 55.000 0.00 0.00 42.50 3.91
405 426 2.562635 CTGTCTCCTTCCATGCAGATG 58.437 52.381 0.00 0.00 0.00 2.90
406 427 1.489649 CCTGTCTCCTTCCATGCAGAT 59.510 52.381 0.00 0.00 0.00 2.90
407 428 0.907486 CCTGTCTCCTTCCATGCAGA 59.093 55.000 0.00 0.00 0.00 4.26
408 429 0.747283 GCCTGTCTCCTTCCATGCAG 60.747 60.000 0.00 0.00 0.00 4.41
409 430 1.300963 GCCTGTCTCCTTCCATGCA 59.699 57.895 0.00 0.00 0.00 3.96
410 431 0.747283 CTGCCTGTCTCCTTCCATGC 60.747 60.000 0.00 0.00 0.00 4.06
411 432 0.747283 GCTGCCTGTCTCCTTCCATG 60.747 60.000 0.00 0.00 0.00 3.66
412 433 1.606531 GCTGCCTGTCTCCTTCCAT 59.393 57.895 0.00 0.00 0.00 3.41
413 434 2.596851 GGCTGCCTGTCTCCTTCCA 61.597 63.158 12.43 0.00 0.00 3.53
414 435 2.270527 GGCTGCCTGTCTCCTTCC 59.729 66.667 12.43 0.00 0.00 3.46
415 436 2.125350 CGGCTGCCTGTCTCCTTC 60.125 66.667 17.92 0.00 0.00 3.46
416 437 4.400961 GCGGCTGCCTGTCTCCTT 62.401 66.667 17.92 0.00 33.98 3.36
419 440 4.385405 ACAGCGGCTGCCTGTCTC 62.385 66.667 28.80 0.61 44.31 3.36
420 441 4.694233 CACAGCGGCTGCCTGTCT 62.694 66.667 28.80 6.30 44.31 3.41
421 442 3.589654 TACACAGCGGCTGCCTGTC 62.590 63.158 28.80 5.75 44.31 3.51
422 443 3.625897 TACACAGCGGCTGCCTGT 61.626 61.111 28.80 26.00 44.31 4.00
423 444 3.121030 GTACACAGCGGCTGCCTG 61.121 66.667 28.80 21.99 44.31 4.85
424 445 4.394712 GGTACACAGCGGCTGCCT 62.395 66.667 28.80 16.43 44.31 4.75
426 447 4.735132 TCGGTACACAGCGGCTGC 62.735 66.667 28.80 10.33 45.57 5.25
427 448 2.809601 GTCGGTACACAGCGGCTG 60.810 66.667 27.43 27.43 46.35 4.85
430 451 4.789075 CCCGTCGGTACACAGCGG 62.789 72.222 11.06 9.45 45.57 5.52
432 453 4.065281 AGCCCGTCGGTACACAGC 62.065 66.667 11.06 5.14 0.00 4.40
433 454 2.126071 CAGCCCGTCGGTACACAG 60.126 66.667 11.06 0.00 0.00 3.66
434 455 4.367023 GCAGCCCGTCGGTACACA 62.367 66.667 11.06 0.00 0.00 3.72
448 469 3.476646 CAGCTCACTCACGCGCAG 61.477 66.667 5.73 4.78 0.00 5.18
451 472 3.108289 CACCAGCTCACTCACGCG 61.108 66.667 3.53 3.53 0.00 6.01
452 473 3.418068 GCACCAGCTCACTCACGC 61.418 66.667 0.00 0.00 37.91 5.34
453 474 3.108289 CGCACCAGCTCACTCACG 61.108 66.667 0.00 0.00 39.10 4.35
454 475 3.418068 GCGCACCAGCTCACTCAC 61.418 66.667 0.30 0.00 39.10 3.51
455 476 3.927548 TGCGCACCAGCTCACTCA 61.928 61.111 5.66 0.00 39.10 3.41
468 489 2.098298 CAAGTACCATGCGTGCGC 59.902 61.111 9.85 9.85 42.35 6.09
469 490 2.098298 GCAAGTACCATGCGTGCG 59.902 61.111 0.00 0.00 33.57 5.34
470 491 2.331893 TGGCAAGTACCATGCGTGC 61.332 57.895 13.32 2.06 44.75 5.34
471 492 3.979789 TGGCAAGTACCATGCGTG 58.020 55.556 13.32 0.00 44.75 5.34
477 498 0.037590 GGGTGACATGGCAAGTACCA 59.962 55.000 0.58 2.96 45.82 3.25
494 515 1.406069 CGGTCCTGAACAATCTGAGGG 60.406 57.143 0.00 0.00 0.00 4.30
504 525 1.592223 CTCTGGTCCGGTCCTGAAC 59.408 63.158 23.40 4.59 35.59 3.18
505 526 2.283529 GCTCTGGTCCGGTCCTGAA 61.284 63.158 23.40 11.04 35.59 3.02
506 527 2.680352 GCTCTGGTCCGGTCCTGA 60.680 66.667 22.28 22.28 34.95 3.86
547 575 4.563168 CCTTCCATGCAGATGTATCTCTCC 60.563 50.000 0.00 0.00 34.22 3.71
555 583 1.911357 TGTCTCCTTCCATGCAGATGT 59.089 47.619 0.00 0.00 0.00 3.06
588 616 0.522286 CTCAGCTCACTCACGCGTAG 60.522 60.000 13.44 12.67 0.00 3.51
737 798 2.092699 GTGAGAGGGAAAGAGATTGGGG 60.093 54.545 0.00 0.00 0.00 4.96
739 800 3.988976 TGTGAGAGGGAAAGAGATTGG 57.011 47.619 0.00 0.00 0.00 3.16
741 802 3.265221 TGCATGTGAGAGGGAAAGAGATT 59.735 43.478 0.00 0.00 0.00 2.40
742 803 2.842496 TGCATGTGAGAGGGAAAGAGAT 59.158 45.455 0.00 0.00 0.00 2.75
774 846 7.335627 TGATTGATACTCCGTAGAAAATTGGT 58.664 34.615 0.00 0.00 0.00 3.67
776 848 9.869844 GATTGATTGATACTCCGTAGAAAATTG 57.130 33.333 0.00 0.00 0.00 2.32
778 850 7.661847 GGGATTGATTGATACTCCGTAGAAAAT 59.338 37.037 0.00 0.00 0.00 1.82
782 854 5.394738 AGGGATTGATTGATACTCCGTAGA 58.605 41.667 0.00 0.00 0.00 2.59
783 855 5.730296 AGGGATTGATTGATACTCCGTAG 57.270 43.478 0.00 0.00 0.00 3.51
784 856 6.014840 GGTTAGGGATTGATTGATACTCCGTA 60.015 42.308 0.00 0.00 0.00 4.02
785 857 5.221661 GGTTAGGGATTGATTGATACTCCGT 60.222 44.000 0.00 0.00 0.00 4.69
786 858 5.012148 AGGTTAGGGATTGATTGATACTCCG 59.988 44.000 0.00 0.00 0.00 4.63
787 859 6.441088 AGGTTAGGGATTGATTGATACTCC 57.559 41.667 0.00 0.00 0.00 3.85
788 860 6.271159 AGGAGGTTAGGGATTGATTGATACTC 59.729 42.308 0.00 0.00 0.00 2.59
789 861 6.153924 AGGAGGTTAGGGATTGATTGATACT 58.846 40.000 0.00 0.00 0.00 2.12
790 862 6.271159 AGAGGAGGTTAGGGATTGATTGATAC 59.729 42.308 0.00 0.00 0.00 2.24
875 954 0.317479 GTCGGTGCAGTGGACTTACT 59.683 55.000 14.88 0.00 0.00 2.24
1011 1105 3.293901 GAGCAGAGTGGCGAGCAGT 62.294 63.158 0.00 0.00 39.27 4.40
1035 1129 2.684843 GGGTCTGCTTGCTTGAGCG 61.685 63.158 0.00 0.00 45.64 5.03
1036 1130 1.174712 TTGGGTCTGCTTGCTTGAGC 61.175 55.000 0.00 0.00 43.00 4.26
1037 1131 0.879765 CTTGGGTCTGCTTGCTTGAG 59.120 55.000 0.00 0.00 0.00 3.02
1038 1132 1.174712 GCTTGGGTCTGCTTGCTTGA 61.175 55.000 0.00 0.00 0.00 3.02
1039 1133 1.288127 GCTTGGGTCTGCTTGCTTG 59.712 57.895 0.00 0.00 0.00 4.01
1042 1136 2.960170 CTGCTTGGGTCTGCTTGC 59.040 61.111 0.00 0.00 0.00 4.01
1051 1145 3.441290 GCTCTGCTGCTGCTTGGG 61.441 66.667 17.00 10.38 40.48 4.12
1651 1756 2.588877 CGTGGCCATGGATCGACC 60.589 66.667 18.40 7.22 39.54 4.79
1652 1757 1.592669 CTCGTGGCCATGGATCGAC 60.593 63.158 24.78 5.12 0.00 4.20
1653 1758 1.613317 AACTCGTGGCCATGGATCGA 61.613 55.000 24.78 18.98 0.00 3.59
1654 1759 1.153369 AACTCGTGGCCATGGATCG 60.153 57.895 24.78 15.56 0.00 3.69
1655 1760 0.179000 AGAACTCGTGGCCATGGATC 59.821 55.000 24.78 18.58 0.00 3.36
1656 1761 0.620556 AAGAACTCGTGGCCATGGAT 59.379 50.000 24.78 10.47 0.00 3.41
1657 1762 0.321564 CAAGAACTCGTGGCCATGGA 60.322 55.000 24.78 16.32 0.00 3.41
1658 1763 1.926511 GCAAGAACTCGTGGCCATGG 61.927 60.000 24.78 17.05 0.00 3.66
1659 1764 0.957395 AGCAAGAACTCGTGGCCATG 60.957 55.000 19.62 19.62 0.00 3.66
1660 1765 0.674895 GAGCAAGAACTCGTGGCCAT 60.675 55.000 9.72 0.00 0.00 4.40
1661 1766 1.301716 GAGCAAGAACTCGTGGCCA 60.302 57.895 0.00 0.00 0.00 5.36
1662 1767 0.603975 AAGAGCAAGAACTCGTGGCC 60.604 55.000 0.00 0.00 41.77 5.36
1663 1768 0.514691 CAAGAGCAAGAACTCGTGGC 59.485 55.000 0.00 0.00 40.94 5.01
1664 1769 0.514691 GCAAGAGCAAGAACTCGTGG 59.485 55.000 9.03 0.00 43.66 4.94
1665 1770 1.506493 AGCAAGAGCAAGAACTCGTG 58.494 50.000 3.54 3.54 45.45 4.35
1666 1771 1.869767 CAAGCAAGAGCAAGAACTCGT 59.130 47.619 0.00 0.00 45.49 4.18
1667 1772 1.399471 GCAAGCAAGAGCAAGAACTCG 60.399 52.381 0.00 0.00 45.49 4.18
1668 1773 1.878734 AGCAAGCAAGAGCAAGAACTC 59.121 47.619 0.00 0.00 45.49 3.01
1669 1774 1.978454 AGCAAGCAAGAGCAAGAACT 58.022 45.000 0.00 0.00 45.49 3.01
1670 1775 2.033801 TCAAGCAAGCAAGAGCAAGAAC 59.966 45.455 0.00 0.00 45.49 3.01
1671 1776 2.300433 TCAAGCAAGCAAGAGCAAGAA 58.700 42.857 0.00 0.00 45.49 2.52
1672 1777 1.971481 TCAAGCAAGCAAGAGCAAGA 58.029 45.000 0.00 0.00 45.49 3.02
1673 1778 2.596452 CATCAAGCAAGCAAGAGCAAG 58.404 47.619 0.00 0.00 45.49 4.01
1674 1779 1.336517 GCATCAAGCAAGCAAGAGCAA 60.337 47.619 0.00 0.00 43.38 3.91
1675 1780 0.242825 GCATCAAGCAAGCAAGAGCA 59.757 50.000 0.00 0.00 43.38 4.26
1676 1781 0.797249 CGCATCAAGCAAGCAAGAGC 60.797 55.000 0.00 0.00 46.13 4.09
1677 1782 0.797249 GCGCATCAAGCAAGCAAGAG 60.797 55.000 0.30 0.00 46.13 2.85
1678 1783 1.210931 GCGCATCAAGCAAGCAAGA 59.789 52.632 0.30 0.00 46.13 3.02
1687 1792 0.661552 CCAGATCCAAGCGCATCAAG 59.338 55.000 11.47 0.66 0.00 3.02
1715 1820 5.279156 GCTCTGTTTTTCCACCAGAATCATT 60.279 40.000 0.00 0.00 34.99 2.57
1716 1821 4.219288 GCTCTGTTTTTCCACCAGAATCAT 59.781 41.667 0.00 0.00 34.99 2.45
1722 1827 2.886523 TGATGCTCTGTTTTTCCACCAG 59.113 45.455 0.00 0.00 0.00 4.00
1933 2051 4.474651 TGATGCAAGGGGAAGAAAGAGATA 59.525 41.667 0.00 0.00 0.00 1.98
1971 2090 1.676529 GATCTGAATCTGACGGACGGA 59.323 52.381 0.00 0.00 38.35 4.69
1985 2104 2.516227 AGTCTCGTTCCTGGATCTGA 57.484 50.000 0.00 0.00 0.00 3.27
1986 2105 3.181485 GGTTAGTCTCGTTCCTGGATCTG 60.181 52.174 0.00 0.00 0.00 2.90
1987 2106 3.025262 GGTTAGTCTCGTTCCTGGATCT 58.975 50.000 0.00 0.00 0.00 2.75
1988 2107 2.758979 TGGTTAGTCTCGTTCCTGGATC 59.241 50.000 0.00 0.00 0.00 3.36
1989 2108 2.816411 TGGTTAGTCTCGTTCCTGGAT 58.184 47.619 0.00 0.00 0.00 3.41
1990 2109 2.297698 TGGTTAGTCTCGTTCCTGGA 57.702 50.000 0.00 0.00 0.00 3.86
1994 2113 2.985139 CGTCTTTGGTTAGTCTCGTTCC 59.015 50.000 0.00 0.00 0.00 3.62
2017 2136 2.647529 TCTTGAGCTGCAATGCAATG 57.352 45.000 9.92 0.00 38.41 2.82
2018 2137 2.561419 ACTTCTTGAGCTGCAATGCAAT 59.439 40.909 9.92 0.02 38.41 3.56
2019 2138 1.958579 ACTTCTTGAGCTGCAATGCAA 59.041 42.857 9.92 0.00 38.41 4.08
2020 2139 1.612676 ACTTCTTGAGCTGCAATGCA 58.387 45.000 7.99 7.99 35.59 3.96
2021 2140 2.228343 AGAACTTCTTGAGCTGCAATGC 59.772 45.455 1.02 0.00 35.59 3.56
2022 2141 4.142730 GGTAGAACTTCTTGAGCTGCAATG 60.143 45.833 1.02 0.00 35.59 2.82
2023 2142 4.006319 GGTAGAACTTCTTGAGCTGCAAT 58.994 43.478 1.02 0.00 35.59 3.56
2024 2143 3.181455 TGGTAGAACTTCTTGAGCTGCAA 60.181 43.478 1.02 0.00 34.73 4.08
2334 2453 1.134699 GGACGGATCATGAGTGAGCAA 60.135 52.381 0.09 0.00 42.47 3.91
2374 2498 7.134815 CCAATTGATCCGATTACTCAATCAAC 58.865 38.462 7.12 0.00 40.61 3.18
2425 2549 4.286101 GCACAGAGCAAAAGAAGAAGAAC 58.714 43.478 0.00 0.00 44.79 3.01
2464 2591 1.466558 CAAAAAGAAGAGGAGCGAGGC 59.533 52.381 0.00 0.00 0.00 4.70
2465 2592 2.481952 CACAAAAAGAAGAGGAGCGAGG 59.518 50.000 0.00 0.00 0.00 4.63
2466 2593 3.134458 ACACAAAAAGAAGAGGAGCGAG 58.866 45.455 0.00 0.00 0.00 5.03
2467 2594 3.194005 ACACAAAAAGAAGAGGAGCGA 57.806 42.857 0.00 0.00 0.00 4.93
2468 2595 4.932200 AGATACACAAAAAGAAGAGGAGCG 59.068 41.667 0.00 0.00 0.00 5.03
2469 2596 9.771534 ATATAGATACACAAAAAGAAGAGGAGC 57.228 33.333 0.00 0.00 0.00 4.70
2526 2653 0.167251 CACCACGGCGATACAAAACC 59.833 55.000 16.62 0.00 0.00 3.27
2638 2770 0.960364 TCGAGGGATTGGCAAACAGC 60.960 55.000 3.01 0.00 44.65 4.40
2639 2771 1.470098 CTTCGAGGGATTGGCAAACAG 59.530 52.381 3.01 0.00 0.00 3.16
2640 2772 1.073125 TCTTCGAGGGATTGGCAAACA 59.927 47.619 3.01 0.00 0.00 2.83
2641 2773 1.821216 TCTTCGAGGGATTGGCAAAC 58.179 50.000 3.01 0.17 0.00 2.93
2642 2774 2.577606 TTCTTCGAGGGATTGGCAAA 57.422 45.000 3.01 0.00 0.00 3.68
2643 2775 2.577606 TTTCTTCGAGGGATTGGCAA 57.422 45.000 0.68 0.68 0.00 4.52
2644 2776 2.577606 TTTTCTTCGAGGGATTGGCA 57.422 45.000 0.00 0.00 0.00 4.92
2645 2777 3.774066 CATTTTTCTTCGAGGGATTGGC 58.226 45.455 0.00 0.00 0.00 4.52
2646 2778 3.731867 CGCATTTTTCTTCGAGGGATTGG 60.732 47.826 0.00 0.00 0.00 3.16
2647 2779 3.119849 ACGCATTTTTCTTCGAGGGATTG 60.120 43.478 0.00 0.00 0.00 2.67
2648 2780 3.081804 ACGCATTTTTCTTCGAGGGATT 58.918 40.909 0.00 0.00 0.00 3.01
2649 2781 2.711542 ACGCATTTTTCTTCGAGGGAT 58.288 42.857 0.00 0.00 0.00 3.85
2650 2782 2.178912 ACGCATTTTTCTTCGAGGGA 57.821 45.000 0.00 0.00 0.00 4.20
2651 2783 2.031157 ACAACGCATTTTTCTTCGAGGG 60.031 45.455 0.00 0.00 0.00 4.30
2652 2784 3.268013 ACAACGCATTTTTCTTCGAGG 57.732 42.857 0.00 0.00 0.00 4.63
2653 2785 4.603825 GCAAACAACGCATTTTTCTTCGAG 60.604 41.667 0.00 0.00 0.00 4.04
2654 2786 3.241784 GCAAACAACGCATTTTTCTTCGA 59.758 39.130 0.00 0.00 0.00 3.71
2655 2787 3.521406 GCAAACAACGCATTTTTCTTCG 58.479 40.909 0.00 0.00 0.00 3.79
2656 2788 3.308323 TGGCAAACAACGCATTTTTCTTC 59.692 39.130 0.00 0.00 0.00 2.87
2657 2789 3.265791 TGGCAAACAACGCATTTTTCTT 58.734 36.364 0.00 0.00 0.00 2.52
2658 2790 2.898705 TGGCAAACAACGCATTTTTCT 58.101 38.095 0.00 0.00 0.00 2.52
2659 2791 3.665173 TTGGCAAACAACGCATTTTTC 57.335 38.095 0.00 0.00 33.18 2.29
2660 2792 3.791455 GCATTGGCAAACAACGCATTTTT 60.791 39.130 3.01 0.00 46.80 1.94
2661 2793 2.286891 GCATTGGCAAACAACGCATTTT 60.287 40.909 3.01 0.00 46.80 1.82
2662 2794 1.263752 GCATTGGCAAACAACGCATTT 59.736 42.857 3.01 0.00 46.80 2.32
2663 2795 0.867086 GCATTGGCAAACAACGCATT 59.133 45.000 3.01 0.00 46.80 3.56
2683 2815 4.634199 CCTCATGTCATTTGGTTTGCTTT 58.366 39.130 0.00 0.00 0.00 3.51
2706 2838 2.883574 CAACAAATAGCAGTGGCATGG 58.116 47.619 0.00 0.00 44.61 3.66
2711 2844 1.806542 ACTCGCAACAAATAGCAGTGG 59.193 47.619 0.00 0.00 0.00 4.00
2720 2853 3.020984 AGGAGGAAAAACTCGCAACAAA 58.979 40.909 0.00 0.00 38.39 2.83
2786 2921 3.108144 CTCGTGGAGCAACAAGTTTTTG 58.892 45.455 0.00 0.00 40.24 2.44
2804 2939 2.383298 AACAAACACGATGTTGCTCG 57.617 45.000 4.51 0.00 40.14 5.03
2831 2966 5.494724 TCTTCAAGAGCAATCACTAGCATT 58.505 37.500 0.00 0.00 0.00 3.56
2840 2975 7.608308 AGTACTTCAATCTTCAAGAGCAATC 57.392 36.000 0.00 0.00 0.00 2.67
2844 2979 6.816140 AGCTAAGTACTTCAATCTTCAAGAGC 59.184 38.462 12.39 10.62 0.00 4.09
2850 2985 9.240159 GCTAAGTAGCTAAGTACTTCAATCTTC 57.760 37.037 12.39 3.63 45.62 2.87
2869 3004 0.983905 TGCATTCCCCGGGCTAAGTA 60.984 55.000 17.73 0.80 0.00 2.24
2870 3005 2.270874 CTGCATTCCCCGGGCTAAGT 62.271 60.000 17.73 0.00 0.00 2.24
2871 3006 1.526917 CTGCATTCCCCGGGCTAAG 60.527 63.158 17.73 5.85 0.00 2.18
2872 3007 2.595095 CTGCATTCCCCGGGCTAA 59.405 61.111 17.73 12.43 0.00 3.09
2873 3008 4.189580 GCTGCATTCCCCGGGCTA 62.190 66.667 17.73 4.80 0.00 3.93
2876 3011 3.350031 AAGAGCTGCATTCCCCGGG 62.350 63.158 15.80 15.80 0.00 5.73
2891 3026 7.817478 TGCTTAGAAGAAATGTTATCGTCAAGA 59.183 33.333 0.00 0.00 0.00 3.02
2895 3030 9.774742 AATTTGCTTAGAAGAAATGTTATCGTC 57.225 29.630 0.00 0.00 0.00 4.20
2956 3091 2.825205 CTCAAACAAACAAGGCTTGGG 58.175 47.619 29.26 20.12 34.12 4.12
2958 3093 3.169355 AGCTCAAACAAACAAGGCTTG 57.831 42.857 25.06 25.06 0.00 4.01
2960 3095 3.256631 CCATAGCTCAAACAAACAAGGCT 59.743 43.478 0.00 0.00 0.00 4.58
2992 3136 3.591835 CACCGCCACAAACCGCTT 61.592 61.111 0.00 0.00 0.00 4.68
2996 3140 2.969677 CTTTGCCACCGCCACAAACC 62.970 60.000 0.00 0.00 0.00 3.27
2997 3141 1.591327 CTTTGCCACCGCCACAAAC 60.591 57.895 0.00 0.00 0.00 2.93
3025 3169 0.249953 TCGGTAAGCGCCTTGTTTCA 60.250 50.000 2.29 0.00 0.00 2.69
3070 3214 1.131883 CGAGGCAAGCTCAATCCTTTG 59.868 52.381 0.00 0.00 0.00 2.77
3072 3216 0.326264 ACGAGGCAAGCTCAATCCTT 59.674 50.000 0.00 0.00 0.00 3.36
3076 4738 3.583383 GCACGAGGCAAGCTCAAT 58.417 55.556 0.00 0.00 43.97 2.57
3104 4766 2.165845 GACCAACTTAGGCTCGCTCTAA 59.834 50.000 0.00 0.00 0.00 2.10
3112 4774 1.066787 GCTCGAAGACCAACTTAGGCT 60.067 52.381 0.00 0.00 39.13 4.58
3404 5066 1.886585 GAGCTGAGCTCGAACCTGA 59.113 57.895 19.71 0.00 45.85 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.