Multiple sequence alignment - TraesCS2D01G581400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G581400 chr2D 100.000 3925 0 0 1 3925 642989827 642993751 0.000000e+00 7249.0
1 TraesCS2D01G581400 chr2D 90.250 400 21 8 2790 3181 643067134 643067523 1.260000e-139 507.0
2 TraesCS2D01G581400 chr2A 91.656 3116 156 52 151 3213 767944032 767947096 0.000000e+00 4218.0
3 TraesCS2D01G581400 chr2A 81.234 389 41 14 2680 3049 767575007 767574632 6.420000e-73 285.0
4 TraesCS2D01G581400 chr2A 94.203 138 5 2 1 137 767943796 767943931 1.430000e-49 207.0
5 TraesCS2D01G581400 chr2A 88.387 155 16 2 3763 3917 767947488 767947640 6.700000e-43 185.0
6 TraesCS2D01G581400 chr2A 83.846 130 18 3 3212 3340 657103696 657103569 1.920000e-23 121.0
7 TraesCS2D01G581400 chr2A 84.545 110 10 6 3232 3339 424168657 424168553 6.940000e-18 102.0
8 TraesCS2D01G581400 chrUn 90.766 1462 84 25 1767 3213 31602227 31603652 0.000000e+00 1905.0
9 TraesCS2D01G581400 chrUn 91.332 946 37 15 1 939 31600356 31601263 0.000000e+00 1251.0
10 TraesCS2D01G581400 chrUn 87.034 725 61 16 851 1563 31601261 31601964 0.000000e+00 787.0
11 TraesCS2D01G581400 chrUn 91.111 45 4 0 3881 3925 31604223 31604267 1.180000e-05 62.1
12 TraesCS2D01G581400 chr6D 85.524 1126 85 34 1 1099 467049189 467050263 0.000000e+00 1105.0
13 TraesCS2D01G581400 chr6D 91.781 73 2 1 1303 1371 467050272 467050344 8.980000e-17 99.0
14 TraesCS2D01G581400 chr6B 84.400 1141 103 24 1 1125 712251931 712253012 0.000000e+00 1051.0
15 TraesCS2D01G581400 chr6B 75.036 685 146 20 1785 2464 159951897 159952561 1.070000e-75 294.0
16 TraesCS2D01G581400 chr6B 84.568 162 13 6 1404 1563 716254254 716254103 2.440000e-32 150.0
17 TraesCS2D01G581400 chr6B 85.088 114 9 5 3232 3339 686512907 686512796 4.150000e-20 110.0
18 TraesCS2D01G581400 chr6B 83.088 136 8 12 1436 1563 712253119 712253247 4.150000e-20 110.0
19 TraesCS2D01G581400 chr6B 83.673 98 3 1 1303 1400 712253028 712253112 3.250000e-11 80.5
20 TraesCS2D01G581400 chr6A 86.749 649 57 13 1 635 613343032 613343665 0.000000e+00 695.0
21 TraesCS2D01G581400 chr6A 87.907 215 14 5 667 877 613343665 613343871 3.920000e-60 243.0
22 TraesCS2D01G581400 chr6A 79.848 263 17 15 1303 1563 613344065 613344293 4.060000e-35 159.0
23 TraesCS2D01G581400 chr6A 88.430 121 3 2 923 1039 613343882 613343995 6.840000e-28 135.0
24 TraesCS2D01G581400 chr4D 87.302 126 7 4 3224 3340 494509568 494509693 6.840000e-28 135.0
25 TraesCS2D01G581400 chr4D 84.259 108 14 3 3232 3339 389518833 389518937 6.940000e-18 102.0
26 TraesCS2D01G581400 chr3A 86.555 119 5 7 3225 3340 149084180 149084290 1.920000e-23 121.0
27 TraesCS2D01G581400 chr1A 84.375 128 12 8 3215 3340 359978293 359978172 6.890000e-23 119.0
28 TraesCS2D01G581400 chr5B 85.185 108 13 3 3232 3339 394016239 394016135 1.490000e-19 108.0
29 TraesCS2D01G581400 chr5B 84.466 103 13 3 2366 2467 518810696 518810796 8.980000e-17 99.0
30 TraesCS2D01G581400 chr3D 84.259 108 13 4 3232 3339 613075451 613075348 6.940000e-18 102.0
31 TraesCS2D01G581400 chr3D 92.683 41 3 0 3451 3491 338932026 338931986 4.240000e-05 60.2
32 TraesCS2D01G581400 chr5A 73.196 291 73 5 2179 2467 545531143 545531430 2.500000e-17 100.0
33 TraesCS2D01G581400 chr5A 73.206 209 36 13 1939 2131 537626266 537626470 1.520000e-04 58.4
34 TraesCS2D01G581400 chr5D 84.615 104 11 5 2366 2467 429578118 429578218 8.980000e-17 99.0
35 TraesCS2D01G581400 chr5D 90.196 51 5 0 2096 2146 424033613 424033663 2.530000e-07 67.6
36 TraesCS2D01G581400 chr4A 76.630 184 26 7 3346 3512 739315214 739315397 6.990000e-13 86.1
37 TraesCS2D01G581400 chr4A 78.102 137 14 13 3215 3340 606786804 606786673 5.440000e-09 73.1
38 TraesCS2D01G581400 chr4A 90.385 52 2 3 3215 3265 606723319 606723270 9.100000e-07 65.8
39 TraesCS2D01G581400 chr4B 70.659 501 112 23 1934 2415 184865085 184865569 1.170000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G581400 chr2D 642989827 642993751 3924 False 7249.000000 7249 100.000000 1 3925 1 chr2D.!!$F1 3924
1 TraesCS2D01G581400 chr2A 767943796 767947640 3844 False 1536.666667 4218 91.415333 1 3917 3 chr2A.!!$F1 3916
2 TraesCS2D01G581400 chrUn 31600356 31604267 3911 False 1001.275000 1905 90.060750 1 3925 4 chrUn.!!$F1 3924
3 TraesCS2D01G581400 chr6D 467049189 467050344 1155 False 602.000000 1105 88.652500 1 1371 2 chr6D.!!$F1 1370
4 TraesCS2D01G581400 chr6B 712251931 712253247 1316 False 413.833333 1051 83.720333 1 1563 3 chr6B.!!$F2 1562
5 TraesCS2D01G581400 chr6B 159951897 159952561 664 False 294.000000 294 75.036000 1785 2464 1 chr6B.!!$F1 679
6 TraesCS2D01G581400 chr6A 613343032 613344293 1261 False 308.000000 695 85.733500 1 1563 4 chr6A.!!$F1 1562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 730 1.434622 CCACTCACAGATGCGATGGC 61.435 60.0 0.0 0.0 40.52 4.40 F
1144 1357 1.172175 GCAAGAGGAAGCAAGGAAGG 58.828 55.0 0.0 0.0 0.00 3.46 F
2807 3201 0.606401 CCAGGAAGCAATCGGTGTGT 60.606 55.0 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1933 0.106268 TCAGGTCAGGGCTTGCAAAA 60.106 50.0 0.00 0.0 0.00 2.44 R
2863 3257 0.377554 CAGCAGCAGCAGCATTAGAC 59.622 55.0 12.92 0.0 45.49 2.59 R
3845 4519 0.544357 ATCGGGTTGTGGAGGAGACA 60.544 55.0 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 260 3.136626 AGTTGCCCACTACTGAGAAAAGT 59.863 43.478 0.00 0.00 31.97 2.66
237 353 4.517285 GGAACAGGAGATGTCAAGCATAA 58.483 43.478 0.00 0.00 43.00 1.90
338 454 9.860898 GAGCCATAATTTCATTAAACTCTGTTT 57.139 29.630 1.33 1.33 0.00 2.83
497 613 1.474077 CATTACAAGGTCAAGCTGGGC 59.526 52.381 0.00 0.00 0.00 5.36
577 697 2.555757 AGTGCAAGCAGATTCTTGTTCC 59.444 45.455 0.00 0.00 43.92 3.62
610 730 1.434622 CCACTCACAGATGCGATGGC 61.435 60.000 0.00 0.00 40.52 4.40
649 769 2.977914 TGGCTAGTTCTCATCTTGTGC 58.022 47.619 0.00 0.00 0.00 4.57
659 779 3.969312 TCTCATCTTGTGCTGGGATGATA 59.031 43.478 0.00 0.00 42.91 2.15
687 807 2.406130 AGCATTGATTTGTTTGGTGCG 58.594 42.857 0.00 0.00 36.32 5.34
688 808 2.134346 GCATTGATTTGTTTGGTGCGT 58.866 42.857 0.00 0.00 0.00 5.24
764 885 6.151144 ACTGTCGATACATTATGATCCGATCA 59.849 38.462 13.46 13.46 38.18 2.92
899 1107 3.089284 TGATATCGGATATGTCGGTGCT 58.911 45.455 14.96 0.00 0.00 4.40
1144 1357 1.172175 GCAAGAGGAAGCAAGGAAGG 58.828 55.000 0.00 0.00 0.00 3.46
1145 1358 1.271597 GCAAGAGGAAGCAAGGAAGGA 60.272 52.381 0.00 0.00 0.00 3.36
1146 1359 2.709213 CAAGAGGAAGCAAGGAAGGAG 58.291 52.381 0.00 0.00 0.00 3.69
1147 1360 1.284313 AGAGGAAGCAAGGAAGGAGG 58.716 55.000 0.00 0.00 0.00 4.30
1174 1387 2.224018 GCAAGCAAGGTTTGTCCATTCA 60.224 45.455 0.00 0.00 39.02 2.57
1215 1428 3.434453 CCTCCCTCTCACGTATTCTCTCT 60.434 52.174 0.00 0.00 0.00 3.10
1225 1442 7.594015 TCTCACGTATTCTCTCTTTGTGTTTAC 59.406 37.037 0.00 0.00 0.00 2.01
1228 1445 8.004344 CACGTATTCTCTCTTTGTGTTTACTTG 58.996 37.037 0.00 0.00 0.00 3.16
1233 1450 6.349300 TCTCTCTTTGTGTTTACTTGCTCTT 58.651 36.000 0.00 0.00 0.00 2.85
1236 1453 8.500753 TCTCTTTGTGTTTACTTGCTCTTAAA 57.499 30.769 0.00 0.00 0.00 1.52
1249 1466 8.870075 ACTTGCTCTTAAAAATTATCTCACCT 57.130 30.769 0.00 0.00 0.00 4.00
1259 1476 3.769739 TTATCTCACCTGCTGTGTTGT 57.230 42.857 6.80 0.00 45.61 3.32
1291 1510 9.111613 GCAGTATATCTACCTACCTGTATACAG 57.888 40.741 23.58 23.58 43.40 2.74
1402 1642 1.803555 GCTTCTGCCTCTGTTTCTCAC 59.196 52.381 0.00 0.00 0.00 3.51
1421 1661 2.682155 CCTGCTTCTTCTCAGGTACC 57.318 55.000 2.73 2.73 43.66 3.34
1437 1677 5.063204 CAGGTACCACTCTTCACAATCAAA 58.937 41.667 15.94 0.00 0.00 2.69
1439 1679 6.207417 CAGGTACCACTCTTCACAATCAAATT 59.793 38.462 15.94 0.00 0.00 1.82
1465 1714 4.829968 TCATCTTCTCCTCTTGCTTTCTG 58.170 43.478 0.00 0.00 0.00 3.02
1466 1715 3.051081 TCTTCTCCTCTTGCTTTCTGC 57.949 47.619 0.00 0.00 43.25 4.26
1586 1865 2.555757 AGATTGCCTTGCACTCTGTTTC 59.444 45.455 7.97 0.00 44.67 2.78
1644 1932 8.154203 TCAGGACATACTCAACATAAGTGAAAA 58.846 33.333 0.00 0.00 0.00 2.29
1645 1933 8.950210 CAGGACATACTCAACATAAGTGAAAAT 58.050 33.333 0.00 0.00 0.00 1.82
1646 1934 9.520515 AGGACATACTCAACATAAGTGAAAATT 57.479 29.630 0.00 0.00 0.00 1.82
1690 1980 2.894763 TTGCCAATGCCATAGATTGC 57.105 45.000 0.00 0.00 36.33 3.56
1693 1983 2.101750 TGCCAATGCCATAGATTGCTTG 59.898 45.455 0.00 0.00 36.33 4.01
1711 2001 5.311265 TGCTTGTCTGAAGATCAGTTCATT 58.689 37.500 7.21 0.00 44.58 2.57
1712 2002 5.766670 TGCTTGTCTGAAGATCAGTTCATTT 59.233 36.000 7.21 0.00 44.58 2.32
1725 2015 9.491675 AGATCAGTTCATTTATCAGATTGCTAG 57.508 33.333 0.00 0.00 0.00 3.42
1742 2121 3.067320 TGCTAGTAGATGCTGCAGTAGTG 59.933 47.826 16.64 0.00 0.00 2.74
1758 2137 5.066764 GCAGTAGTGTTAACTGAACCCAAAA 59.933 40.000 7.22 0.00 45.89 2.44
1759 2138 6.404954 GCAGTAGTGTTAACTGAACCCAAAAA 60.405 38.462 7.22 0.00 45.89 1.94
1764 2143 5.286797 GTGTTAACTGAACCCAAAAACGTTC 59.713 40.000 0.00 0.00 37.22 3.95
1767 2146 4.794278 ACTGAACCCAAAAACGTTCTTT 57.206 36.364 0.00 1.95 39.30 2.52
1770 2149 5.636121 ACTGAACCCAAAAACGTTCTTTTTC 59.364 36.000 0.00 6.59 39.30 2.29
1771 2150 5.539048 TGAACCCAAAAACGTTCTTTTTCA 58.461 33.333 0.00 8.75 39.30 2.69
2175 2554 3.858868 GACGAGCGCCAACTGGACA 62.859 63.158 2.29 0.00 37.39 4.02
2313 2692 2.657237 GACCAGTACTGCTGCCGT 59.343 61.111 17.86 9.32 43.71 5.68
2316 2695 2.343758 CAGTACTGCTGCCGTGGT 59.656 61.111 10.54 0.00 38.52 4.16
2322 2701 1.219124 CTGCTGCCGTGGTCAGTAT 59.781 57.895 0.00 0.00 34.21 2.12
2428 2807 1.348775 CCCCTCCTCCATCTTCACCC 61.349 65.000 0.00 0.00 0.00 4.61
2485 2864 4.100707 TCCAGCAACATGTACGTACTAC 57.899 45.455 25.12 3.47 0.00 2.73
2489 2868 5.029014 CAGCAACATGTACGTACTACTCTC 58.971 45.833 25.12 11.25 0.00 3.20
2493 2872 5.542616 ACATGTACGTACTACTCTCACAC 57.457 43.478 25.12 0.00 0.00 3.82
2517 2896 8.646004 CACCCTTAATTATCATCTCTCTCTGAA 58.354 37.037 0.00 0.00 0.00 3.02
2590 2971 5.446473 CGATTCTTCACACAATCTACAAGCC 60.446 44.000 0.00 0.00 0.00 4.35
2625 3013 6.643388 TGAATGACACTAGCAATCATACACT 58.357 36.000 4.82 0.00 32.74 3.55
2673 3061 3.829886 TTCCGATGAATGAGTTTGTGC 57.170 42.857 0.00 0.00 0.00 4.57
2674 3062 2.777094 TCCGATGAATGAGTTTGTGCA 58.223 42.857 0.00 0.00 0.00 4.57
2675 3063 2.743664 TCCGATGAATGAGTTTGTGCAG 59.256 45.455 0.00 0.00 0.00 4.41
2676 3064 2.743664 CCGATGAATGAGTTTGTGCAGA 59.256 45.455 0.00 0.00 0.00 4.26
2677 3065 3.181513 CCGATGAATGAGTTTGTGCAGAG 60.182 47.826 0.00 0.00 0.00 3.35
2678 3066 3.681417 CGATGAATGAGTTTGTGCAGAGA 59.319 43.478 0.00 0.00 0.00 3.10
2679 3067 4.331992 CGATGAATGAGTTTGTGCAGAGAT 59.668 41.667 0.00 0.00 0.00 2.75
2680 3068 5.502058 CGATGAATGAGTTTGTGCAGAGATC 60.502 44.000 0.00 0.00 0.00 2.75
2681 3069 4.903054 TGAATGAGTTTGTGCAGAGATCT 58.097 39.130 0.00 0.00 0.00 2.75
2682 3070 4.694037 TGAATGAGTTTGTGCAGAGATCTG 59.306 41.667 0.00 5.45 46.40 2.90
2683 3071 3.758755 TGAGTTTGTGCAGAGATCTGT 57.241 42.857 0.00 0.00 45.45 3.41
2684 3072 4.077300 TGAGTTTGTGCAGAGATCTGTT 57.923 40.909 0.00 0.00 45.45 3.16
2690 3078 6.040166 AGTTTGTGCAGAGATCTGTTTTGATT 59.960 34.615 0.00 0.00 45.45 2.57
2695 3083 5.583854 TGCAGAGATCTGTTTTGATTAGCTC 59.416 40.000 0.00 0.00 45.45 4.09
2699 3087 5.482908 AGATCTGTTTTGATTAGCTCGTGT 58.517 37.500 0.00 0.00 0.00 4.49
2711 3099 2.688507 AGCTCGTGTCAGTTTACATGG 58.311 47.619 0.00 0.00 37.07 3.66
2748 3142 6.981762 ATGACAGACACTTCAATGAATCTC 57.018 37.500 0.00 0.00 0.00 2.75
2807 3201 0.606401 CCAGGAAGCAATCGGTGTGT 60.606 55.000 0.00 0.00 0.00 3.72
2871 3271 1.474143 GCACCTCCTCTGGTCTAATGC 60.474 57.143 0.00 0.00 38.45 3.56
2882 3282 0.377554 GTCTAATGCTGCTGCTGCTG 59.622 55.000 27.67 16.73 40.48 4.41
2944 3344 4.016444 TGACTGATTGGTTGATTAAGGCC 58.984 43.478 0.00 0.00 0.00 5.19
2980 3380 0.116143 AGCTGACCTGACCCTCTTCT 59.884 55.000 0.00 0.00 0.00 2.85
3063 3467 4.456911 GGATCAAATTTCTGCACTGTCAGA 59.543 41.667 6.91 6.04 40.99 3.27
3077 3481 4.418013 CTGTCAGACAGTCAGTACTCAG 57.582 50.000 21.00 0.00 41.19 3.35
3079 3483 4.969484 TGTCAGACAGTCAGTACTCAGTA 58.031 43.478 0.00 0.00 31.97 2.74
3080 3484 4.755629 TGTCAGACAGTCAGTACTCAGTAC 59.244 45.833 6.89 6.89 39.10 2.73
3081 3485 4.154556 GTCAGACAGTCAGTACTCAGTACC 59.845 50.000 11.60 0.00 39.58 3.34
3135 3541 5.914085 AGTGAATGTTTCGTTCTCTCTTG 57.086 39.130 3.88 0.00 30.54 3.02
3193 3599 7.290014 TGGGATTATAGACAGCAGAGTAAATGA 59.710 37.037 0.00 0.00 0.00 2.57
3204 3612 8.936864 ACAGCAGAGTAAATGACATAAAACTAC 58.063 33.333 0.00 0.00 0.00 2.73
3205 3613 8.391106 CAGCAGAGTAAATGACATAAAACTACC 58.609 37.037 0.00 0.00 0.00 3.18
3206 3614 8.100791 AGCAGAGTAAATGACATAAAACTACCA 58.899 33.333 0.00 0.00 0.00 3.25
3207 3615 8.175716 GCAGAGTAAATGACATAAAACTACCAC 58.824 37.037 0.00 0.00 0.00 4.16
3208 3616 9.214957 CAGAGTAAATGACATAAAACTACCACA 57.785 33.333 0.00 0.00 0.00 4.17
3209 3617 9.787435 AGAGTAAATGACATAAAACTACCACAA 57.213 29.630 0.00 0.00 0.00 3.33
3214 3622 6.489127 TGACATAAAACTACCACAATTCCG 57.511 37.500 0.00 0.00 0.00 4.30
3215 3623 6.231951 TGACATAAAACTACCACAATTCCGA 58.768 36.000 0.00 0.00 0.00 4.55
3216 3624 6.711194 TGACATAAAACTACCACAATTCCGAA 59.289 34.615 0.00 0.00 0.00 4.30
3217 3625 7.228906 TGACATAAAACTACCACAATTCCGAAA 59.771 33.333 0.00 0.00 0.00 3.46
3218 3626 7.590279 ACATAAAACTACCACAATTCCGAAAG 58.410 34.615 0.00 0.00 0.00 2.62
3219 3627 7.229907 ACATAAAACTACCACAATTCCGAAAGT 59.770 33.333 0.00 0.00 0.00 2.66
3220 3628 8.723311 CATAAAACTACCACAATTCCGAAAGTA 58.277 33.333 0.00 0.00 0.00 2.24
3221 3629 6.549912 AAACTACCACAATTCCGAAAGTAC 57.450 37.500 0.00 0.00 0.00 2.73
3222 3630 5.479124 ACTACCACAATTCCGAAAGTACT 57.521 39.130 0.00 0.00 0.00 2.73
3223 3631 5.476614 ACTACCACAATTCCGAAAGTACTC 58.523 41.667 0.00 0.00 0.00 2.59
3224 3632 4.618920 ACCACAATTCCGAAAGTACTCT 57.381 40.909 0.00 0.00 0.00 3.24
3225 3633 4.969484 ACCACAATTCCGAAAGTACTCTT 58.031 39.130 0.00 0.00 35.14 2.85
3226 3634 4.995487 ACCACAATTCCGAAAGTACTCTTC 59.005 41.667 0.00 2.00 32.90 2.87
3227 3635 5.221661 ACCACAATTCCGAAAGTACTCTTCT 60.222 40.000 0.00 0.00 32.90 2.85
3228 3636 6.014840 ACCACAATTCCGAAAGTACTCTTCTA 60.015 38.462 0.00 0.00 32.90 2.10
3229 3637 6.531948 CCACAATTCCGAAAGTACTCTTCTAG 59.468 42.308 0.00 0.00 32.90 2.43
3230 3638 7.091443 CACAATTCCGAAAGTACTCTTCTAGT 58.909 38.462 0.00 0.00 42.62 2.57
3231 3639 7.273815 CACAATTCCGAAAGTACTCTTCTAGTC 59.726 40.741 0.00 0.00 39.80 2.59
3232 3640 5.893897 TTCCGAAAGTACTCTTCTAGTCC 57.106 43.478 0.00 0.00 39.80 3.85
3233 3641 4.268359 TCCGAAAGTACTCTTCTAGTCCC 58.732 47.826 0.00 0.00 39.80 4.46
3234 3642 3.065095 CCGAAAGTACTCTTCTAGTCCCG 59.935 52.174 0.00 0.00 39.80 5.14
3235 3643 3.937706 CGAAAGTACTCTTCTAGTCCCGA 59.062 47.826 0.00 0.00 39.80 5.14
3236 3644 4.034279 CGAAAGTACTCTTCTAGTCCCGAG 59.966 50.000 0.00 0.00 39.80 4.63
3237 3645 2.921821 AGTACTCTTCTAGTCCCGAGC 58.078 52.381 0.00 0.00 39.80 5.03
3238 3646 2.506644 AGTACTCTTCTAGTCCCGAGCT 59.493 50.000 0.00 0.00 39.80 4.09
3239 3647 2.047002 ACTCTTCTAGTCCCGAGCTC 57.953 55.000 2.73 2.73 30.33 4.09
3240 3648 1.282447 ACTCTTCTAGTCCCGAGCTCA 59.718 52.381 15.40 0.00 30.33 4.26
3241 3649 2.291024 ACTCTTCTAGTCCCGAGCTCAA 60.291 50.000 15.40 0.00 30.33 3.02
3242 3650 2.755655 CTCTTCTAGTCCCGAGCTCAAA 59.244 50.000 15.40 0.00 0.00 2.69
3243 3651 3.366396 TCTTCTAGTCCCGAGCTCAAAT 58.634 45.455 15.40 0.06 0.00 2.32
3244 3652 3.131223 TCTTCTAGTCCCGAGCTCAAATG 59.869 47.826 15.40 0.00 0.00 2.32
3245 3653 2.735151 TCTAGTCCCGAGCTCAAATGA 58.265 47.619 15.40 0.83 0.00 2.57
3246 3654 2.690497 TCTAGTCCCGAGCTCAAATGAG 59.310 50.000 15.40 6.05 44.75 2.90
3255 3663 3.840831 CTCAAATGAGCTCGGGTGA 57.159 52.632 9.64 10.63 35.13 4.02
3256 3664 2.099141 CTCAAATGAGCTCGGGTGAA 57.901 50.000 9.64 0.00 35.13 3.18
3257 3665 1.734465 CTCAAATGAGCTCGGGTGAAC 59.266 52.381 9.64 0.00 35.13 3.18
3258 3666 1.071542 TCAAATGAGCTCGGGTGAACA 59.928 47.619 9.64 0.00 0.00 3.18
3259 3667 1.466167 CAAATGAGCTCGGGTGAACAG 59.534 52.381 9.64 0.00 0.00 3.16
3260 3668 0.687354 AATGAGCTCGGGTGAACAGT 59.313 50.000 9.64 0.00 0.00 3.55
3261 3669 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
3262 3670 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
3263 3671 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
3264 3672 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
3265 3673 3.135994 GAGCTCGGGTGAACAGTAAAAA 58.864 45.455 0.00 0.00 0.00 1.94
3309 3717 9.673454 AAATTCCGAACTTTTATAGTGACAAAC 57.327 29.630 0.00 0.00 37.12 2.93
3310 3718 7.789273 TTCCGAACTTTTATAGTGACAAACA 57.211 32.000 0.00 0.00 37.12 2.83
3311 3719 7.972832 TCCGAACTTTTATAGTGACAAACAT 57.027 32.000 0.00 0.00 37.12 2.71
3312 3720 8.385898 TCCGAACTTTTATAGTGACAAACATT 57.614 30.769 0.00 0.00 37.12 2.71
3313 3721 8.286800 TCCGAACTTTTATAGTGACAAACATTG 58.713 33.333 0.00 0.00 37.12 2.82
3314 3722 8.286800 CCGAACTTTTATAGTGACAAACATTGA 58.713 33.333 0.00 0.00 37.12 2.57
3315 3723 9.103048 CGAACTTTTATAGTGACAAACATTGAC 57.897 33.333 0.00 0.00 37.12 3.18
3316 3724 9.944663 GAACTTTTATAGTGACAAACATTGACA 57.055 29.630 0.00 0.00 37.12 3.58
3324 3732 7.961325 AGTGACAAACATTGACAAAAGTTTT 57.039 28.000 15.43 0.00 35.58 2.43
3325 3733 8.017587 AGTGACAAACATTGACAAAAGTTTTC 57.982 30.769 15.43 15.33 35.58 2.29
3326 3734 7.655328 AGTGACAAACATTGACAAAAGTTTTCA 59.345 29.630 15.43 16.82 35.58 2.69
3327 3735 8.279103 GTGACAAACATTGACAAAAGTTTTCAA 58.721 29.630 15.43 5.43 35.58 2.69
3328 3736 8.279103 TGACAAACATTGACAAAAGTTTTCAAC 58.721 29.630 15.43 9.93 35.58 3.18
3329 3737 7.287229 ACAAACATTGACAAAAGTTTTCAACG 58.713 30.769 15.43 0.80 35.58 4.10
3330 3738 5.448926 ACATTGACAAAAGTTTTCAACGC 57.551 34.783 5.13 0.00 32.21 4.84
3331 3739 5.167845 ACATTGACAAAAGTTTTCAACGCT 58.832 33.333 5.13 0.00 32.21 5.07
3332 3740 5.637387 ACATTGACAAAAGTTTTCAACGCTT 59.363 32.000 5.13 0.00 32.21 4.68
3333 3741 5.508124 TTGACAAAAGTTTTCAACGCTTG 57.492 34.783 0.00 0.00 35.39 4.01
3334 3742 3.366422 TGACAAAAGTTTTCAACGCTTGC 59.634 39.130 0.00 0.00 33.72 4.01
3335 3743 3.321497 ACAAAAGTTTTCAACGCTTGCA 58.679 36.364 0.00 0.00 33.72 4.08
3336 3744 3.743396 ACAAAAGTTTTCAACGCTTGCAA 59.257 34.783 0.00 0.00 33.72 4.08
3337 3745 4.212214 ACAAAAGTTTTCAACGCTTGCAAA 59.788 33.333 0.00 0.00 33.72 3.68
3338 3746 4.999751 AAAGTTTTCAACGCTTGCAAAA 57.000 31.818 0.00 0.00 36.23 2.44
3339 3747 5.544136 AAAGTTTTCAACGCTTGCAAAAT 57.456 30.435 0.00 0.00 36.23 1.82
3340 3748 4.519191 AGTTTTCAACGCTTGCAAAATG 57.481 36.364 0.00 0.00 36.23 2.32
3341 3749 4.180057 AGTTTTCAACGCTTGCAAAATGA 58.820 34.783 0.00 0.00 36.23 2.57
3342 3750 4.810491 AGTTTTCAACGCTTGCAAAATGAT 59.190 33.333 0.00 0.00 36.23 2.45
3343 3751 4.712191 TTTCAACGCTTGCAAAATGATG 57.288 36.364 0.00 0.00 0.00 3.07
3344 3752 3.639716 TCAACGCTTGCAAAATGATGA 57.360 38.095 0.00 0.99 0.00 2.92
3345 3753 4.177165 TCAACGCTTGCAAAATGATGAT 57.823 36.364 0.00 0.00 0.00 2.45
3346 3754 4.558178 TCAACGCTTGCAAAATGATGATT 58.442 34.783 0.00 0.00 0.00 2.57
3347 3755 4.989797 TCAACGCTTGCAAAATGATGATTT 59.010 33.333 0.00 0.00 32.87 2.17
3348 3756 5.466058 TCAACGCTTGCAAAATGATGATTTT 59.534 32.000 0.00 0.00 41.58 1.82
3375 3783 6.827586 TTTTTATCCACGGCTTCTACAAAT 57.172 33.333 0.00 0.00 0.00 2.32
3376 3784 5.811399 TTTATCCACGGCTTCTACAAATG 57.189 39.130 0.00 0.00 0.00 2.32
3377 3785 2.851263 TCCACGGCTTCTACAAATGT 57.149 45.000 0.00 0.00 0.00 2.71
3378 3786 2.695359 TCCACGGCTTCTACAAATGTC 58.305 47.619 0.00 0.00 0.00 3.06
3379 3787 1.393539 CCACGGCTTCTACAAATGTCG 59.606 52.381 0.00 0.00 0.00 4.35
3380 3788 2.066262 CACGGCTTCTACAAATGTCGT 58.934 47.619 0.00 0.00 0.00 4.34
3381 3789 2.478894 CACGGCTTCTACAAATGTCGTT 59.521 45.455 0.00 0.00 0.00 3.85
3382 3790 3.059188 CACGGCTTCTACAAATGTCGTTT 60.059 43.478 0.00 0.00 0.00 3.60
3396 3804 7.538303 AAATGTCGTTTGAAGCTGAAATTTT 57.462 28.000 0.00 0.00 26.55 1.82
3397 3805 5.947503 TGTCGTTTGAAGCTGAAATTTTG 57.052 34.783 0.00 0.00 0.00 2.44
3398 3806 4.267452 TGTCGTTTGAAGCTGAAATTTTGC 59.733 37.500 8.49 8.49 0.00 3.68
3399 3807 4.267452 GTCGTTTGAAGCTGAAATTTTGCA 59.733 37.500 15.97 0.00 0.00 4.08
3400 3808 4.867047 TCGTTTGAAGCTGAAATTTTGCAA 59.133 33.333 15.97 0.00 0.00 4.08
3401 3809 5.005586 TCGTTTGAAGCTGAAATTTTGCAAG 59.994 36.000 15.97 4.13 0.00 4.01
3402 3810 4.799419 TTGAAGCTGAAATTTTGCAAGC 57.201 36.364 15.97 11.80 0.00 4.01
3403 3811 2.796031 TGAAGCTGAAATTTTGCAAGCG 59.204 40.909 15.97 0.00 0.00 4.68
3404 3812 1.142474 AGCTGAAATTTTGCAAGCGC 58.858 45.000 15.97 0.00 39.24 5.92
3405 3813 0.164432 GCTGAAATTTTGCAAGCGCC 59.836 50.000 2.29 0.00 37.32 6.53
3406 3814 0.435769 CTGAAATTTTGCAAGCGCCG 59.564 50.000 2.29 0.00 37.32 6.46
3407 3815 0.031314 TGAAATTTTGCAAGCGCCGA 59.969 45.000 2.29 0.00 37.32 5.54
3408 3816 1.135867 GAAATTTTGCAAGCGCCGAA 58.864 45.000 2.29 0.00 37.32 4.30
3409 3817 1.524776 GAAATTTTGCAAGCGCCGAAA 59.475 42.857 2.29 1.36 37.32 3.46
3410 3818 1.576356 AATTTTGCAAGCGCCGAAAA 58.424 40.000 2.29 0.00 37.32 2.29
3411 3819 0.858583 ATTTTGCAAGCGCCGAAAAC 59.141 45.000 2.29 0.00 37.32 2.43
3412 3820 0.179124 TTTTGCAAGCGCCGAAAACT 60.179 45.000 2.29 0.00 37.32 2.66
3413 3821 0.179124 TTTGCAAGCGCCGAAAACTT 60.179 45.000 2.29 0.00 37.32 2.66
3414 3822 0.179124 TTGCAAGCGCCGAAAACTTT 60.179 45.000 2.29 0.00 37.32 2.66
3415 3823 0.179124 TGCAAGCGCCGAAAACTTTT 60.179 45.000 2.29 0.00 37.32 2.27
3416 3824 0.229500 GCAAGCGCCGAAAACTTTTG 59.771 50.000 2.29 0.00 0.00 2.44
3417 3825 1.555477 CAAGCGCCGAAAACTTTTGT 58.445 45.000 2.29 0.00 0.00 2.83
3418 3826 1.516864 CAAGCGCCGAAAACTTTTGTC 59.483 47.619 2.29 0.00 0.00 3.18
3419 3827 0.736053 AGCGCCGAAAACTTTTGTCA 59.264 45.000 2.29 0.00 0.00 3.58
3420 3828 1.133407 AGCGCCGAAAACTTTTGTCAA 59.867 42.857 2.29 0.00 0.00 3.18
3421 3829 2.124122 GCGCCGAAAACTTTTGTCAAT 58.876 42.857 0.00 0.00 0.00 2.57
3422 3830 2.097444 GCGCCGAAAACTTTTGTCAATG 60.097 45.455 0.00 0.00 0.00 2.82
3423 3831 3.112580 CGCCGAAAACTTTTGTCAATGT 58.887 40.909 0.00 0.00 0.00 2.71
3424 3832 3.549873 CGCCGAAAACTTTTGTCAATGTT 59.450 39.130 0.00 0.00 32.90 2.71
3425 3833 4.032331 CGCCGAAAACTTTTGTCAATGTTT 59.968 37.500 9.87 9.87 40.32 2.83
3426 3834 5.254842 GCCGAAAACTTTTGTCAATGTTTG 58.745 37.500 14.10 6.89 39.19 2.93
3427 3835 5.163903 GCCGAAAACTTTTGTCAATGTTTGT 60.164 36.000 14.10 7.78 39.19 2.83
3428 3836 6.465978 CCGAAAACTTTTGTCAATGTTTGTC 58.534 36.000 14.10 12.54 39.19 3.18
3429 3837 6.090088 CCGAAAACTTTTGTCAATGTTTGTCA 59.910 34.615 14.10 0.00 39.19 3.58
3430 3838 6.947680 CGAAAACTTTTGTCAATGTTTGTCAC 59.052 34.615 14.10 8.35 39.19 3.67
3431 3839 7.148820 CGAAAACTTTTGTCAATGTTTGTCACT 60.149 33.333 14.10 3.35 39.19 3.41
3432 3840 9.134734 GAAAACTTTTGTCAATGTTTGTCACTA 57.865 29.630 14.10 0.00 39.19 2.74
3433 3841 9.482627 AAAACTTTTGTCAATGTTTGTCACTAA 57.517 25.926 14.10 0.00 39.19 2.24
3434 3842 9.651913 AAACTTTTGTCAATGTTTGTCACTAAT 57.348 25.926 13.15 0.00 38.31 1.73
3435 3843 9.651913 AACTTTTGTCAATGTTTGTCACTAATT 57.348 25.926 0.00 0.00 28.24 1.40
3436 3844 9.651913 ACTTTTGTCAATGTTTGTCACTAATTT 57.348 25.926 0.00 0.00 0.00 1.82
3475 3883 7.737972 TTTTCTGAATTTACTGTTCATCCGA 57.262 32.000 0.00 0.00 35.26 4.55
3476 3884 6.968131 TTCTGAATTTACTGTTCATCCGAG 57.032 37.500 0.00 0.00 35.26 4.63
3477 3885 4.870426 TCTGAATTTACTGTTCATCCGAGC 59.130 41.667 0.00 0.00 35.26 5.03
3478 3886 4.832248 TGAATTTACTGTTCATCCGAGCT 58.168 39.130 0.00 0.00 31.07 4.09
3479 3887 4.870426 TGAATTTACTGTTCATCCGAGCTC 59.130 41.667 2.73 2.73 31.07 4.09
3480 3888 3.953712 TTTACTGTTCATCCGAGCTCA 57.046 42.857 15.40 0.00 0.00 4.26
3481 3889 4.471904 TTTACTGTTCATCCGAGCTCAT 57.528 40.909 15.40 0.00 0.00 2.90
3482 3890 5.592104 TTTACTGTTCATCCGAGCTCATA 57.408 39.130 15.40 0.29 0.00 2.15
3483 3891 5.791336 TTACTGTTCATCCGAGCTCATAT 57.209 39.130 15.40 3.06 0.00 1.78
3484 3892 3.987547 ACTGTTCATCCGAGCTCATATG 58.012 45.455 15.40 15.66 0.00 1.78
3485 3893 3.638627 ACTGTTCATCCGAGCTCATATGA 59.361 43.478 19.13 19.13 0.00 2.15
3486 3894 4.236147 CTGTTCATCCGAGCTCATATGAG 58.764 47.826 25.64 25.64 44.75 2.90
3505 3913 2.080286 GCTCGTGCTTAGAAACTCCA 57.920 50.000 1.41 0.00 36.03 3.86
3506 3914 2.622436 GCTCGTGCTTAGAAACTCCAT 58.378 47.619 1.41 0.00 36.03 3.41
3507 3915 2.349886 GCTCGTGCTTAGAAACTCCATG 59.650 50.000 1.41 0.00 36.03 3.66
3508 3916 3.589988 CTCGTGCTTAGAAACTCCATGT 58.410 45.455 0.00 0.00 0.00 3.21
3509 3917 3.585862 TCGTGCTTAGAAACTCCATGTC 58.414 45.455 0.00 0.00 0.00 3.06
3510 3918 2.673368 CGTGCTTAGAAACTCCATGTCC 59.327 50.000 0.00 0.00 0.00 4.02
3531 3939 1.676006 CCACAATTCGGGCTATGGTTC 59.324 52.381 0.00 0.00 0.00 3.62
3532 3940 1.676006 CACAATTCGGGCTATGGTTCC 59.324 52.381 0.00 0.00 0.00 3.62
3577 3985 0.249280 CCGGAAAACCACCACAAAGC 60.249 55.000 0.00 0.00 0.00 3.51
3598 4051 5.355596 AGCTGACTATGCTTATGACAGTTC 58.644 41.667 0.00 0.00 37.52 3.01
3619 4072 3.009275 CCCATCCATCAGGGCACA 58.991 61.111 0.00 0.00 38.44 4.57
3682 4136 2.093500 TCAAATGCCTGTCTATCGTGCT 60.093 45.455 0.00 0.00 0.00 4.40
3686 4140 1.227380 CCTGTCTATCGTGCTGCCC 60.227 63.158 0.00 0.00 0.00 5.36
3702 4156 2.033602 CCGTCTTGTCCCCAACCC 59.966 66.667 0.00 0.00 0.00 4.11
3706 4160 2.033602 CTTGTCCCCAACCCGACC 59.966 66.667 0.00 0.00 0.00 4.79
3707 4161 2.773053 TTGTCCCCAACCCGACCA 60.773 61.111 0.00 0.00 0.00 4.02
3708 4162 3.122727 TTGTCCCCAACCCGACCAC 62.123 63.158 0.00 0.00 0.00 4.16
3739 4240 2.508439 CGGCAGCGGAACACGTAT 60.508 61.111 0.00 0.00 46.52 3.06
3742 4243 1.153628 GCAGCGGAACACGTATCCT 60.154 57.895 15.34 0.00 46.52 3.24
3748 4274 1.138266 CGGAACACGTATCCTTCCCAT 59.862 52.381 15.34 0.00 37.93 4.00
3749 4275 2.561569 GGAACACGTATCCTTCCCATG 58.438 52.381 11.35 0.00 33.98 3.66
3757 4283 1.987807 ATCCTTCCCATGCCGACCAG 61.988 60.000 0.00 0.00 0.00 4.00
3845 4519 1.690893 CCGTCTGGGATCATGTCATCT 59.309 52.381 0.00 0.00 38.47 2.90
3861 4535 1.065854 CATCTGTCTCCTCCACAACCC 60.066 57.143 0.00 0.00 0.00 4.11
3863 4537 1.152419 TGTCTCCTCCACAACCCGA 60.152 57.895 0.00 0.00 0.00 5.14
3864 4538 0.544357 TGTCTCCTCCACAACCCGAT 60.544 55.000 0.00 0.00 0.00 4.18
3866 4540 1.141881 CTCCTCCACAACCCGATCG 59.858 63.158 8.51 8.51 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.905357 CATCATACCCCGGATCTCCC 59.095 60.000 0.73 0.00 0.00 4.30
130 134 2.945008 CAACTGGGCATACAGGTACATG 59.055 50.000 5.87 5.87 42.75 3.21
137 141 1.001020 TGGGCAACTGGGCATACAG 60.001 57.895 1.32 1.32 45.66 2.74
169 260 4.924305 AGACAAGCAGAAAGATTTGCAA 57.076 36.364 0.00 0.00 42.67 4.08
237 353 8.258007 ACAGCATCATCATCAAAATTCTCAAAT 58.742 29.630 0.00 0.00 0.00 2.32
338 454 9.664332 TCCAATTGATTCTGAAACAAAAAGAAA 57.336 25.926 15.55 0.17 33.86 2.52
497 613 4.496670 GGAACCCATCAGTCGTCG 57.503 61.111 0.00 0.00 0.00 5.12
610 730 5.240891 AGCCAATGGATTATCACTATCACG 58.759 41.667 2.05 0.00 0.00 4.35
649 769 8.853077 TCAATGCTTTATTACTATCATCCCAG 57.147 34.615 0.00 0.00 0.00 4.45
659 779 9.206870 CACCAAACAAATCAATGCTTTATTACT 57.793 29.630 0.00 0.00 0.00 2.24
687 807 1.014564 GCCACAACTAGAGCACGGAC 61.015 60.000 0.00 0.00 0.00 4.79
688 808 1.292223 GCCACAACTAGAGCACGGA 59.708 57.895 0.00 0.00 0.00 4.69
764 885 1.071699 ACACCAAGCGTACCATCAACT 59.928 47.619 0.00 0.00 0.00 3.16
899 1107 1.901948 AGACAGGACTGAACCGCGA 60.902 57.895 8.23 0.00 34.73 5.87
1041 1254 0.598065 GGAACATGGCACTTGTGACC 59.402 55.000 3.97 5.83 0.00 4.02
1144 1357 2.718073 CCTTGCTTGCCATGGCCTC 61.718 63.158 33.44 21.40 41.09 4.70
1145 1358 2.682494 CCTTGCTTGCCATGGCCT 60.682 61.111 33.44 0.00 41.09 5.19
1146 1359 2.115734 AAACCTTGCTTGCCATGGCC 62.116 55.000 33.44 18.85 41.31 5.36
1147 1360 0.952010 CAAACCTTGCTTGCCATGGC 60.952 55.000 30.54 30.54 41.31 4.40
1174 1387 1.212935 GGTTCAGGTGAGGCATACCAT 59.787 52.381 11.93 0.00 40.74 3.55
1178 1391 1.204146 GGAGGTTCAGGTGAGGCATA 58.796 55.000 0.00 0.00 0.00 3.14
1225 1442 7.699812 GCAGGTGAGATAATTTTTAAGAGCAAG 59.300 37.037 0.00 0.00 0.00 4.01
1228 1445 7.148171 ACAGCAGGTGAGATAATTTTTAAGAGC 60.148 37.037 6.61 0.00 0.00 4.09
1259 1476 8.391699 ACAGGTAGGTAGATATACTGCTGATAA 58.608 37.037 0.00 0.00 0.00 1.75
1266 1483 9.111613 GCTGTATACAGGTAGGTAGATATACTG 57.888 40.741 29.45 3.77 43.94 2.74
1291 1510 1.210478 ACCTCTGGTGATGTGTATGGC 59.790 52.381 0.00 0.00 32.98 4.40
1421 1661 9.125906 GATGAAGAAATTTGATTGTGAAGAGTG 57.874 33.333 0.00 0.00 0.00 3.51
1437 1677 6.064735 AGCAAGAGGAGAAGATGAAGAAAT 57.935 37.500 0.00 0.00 0.00 2.17
1439 1679 5.495926 AAGCAAGAGGAGAAGATGAAGAA 57.504 39.130 0.00 0.00 0.00 2.52
1465 1714 4.342862 TCTTATCCCAGCAAGAGTATGC 57.657 45.455 0.00 0.00 46.78 3.14
1466 1715 6.204301 CACAATCTTATCCCAGCAAGAGTATG 59.796 42.308 0.00 0.00 34.43 2.39
1467 1716 6.126652 ACACAATCTTATCCCAGCAAGAGTAT 60.127 38.462 0.00 0.00 34.43 2.12
1468 1717 5.189736 ACACAATCTTATCCCAGCAAGAGTA 59.810 40.000 0.00 0.00 34.43 2.59
1472 1721 4.264253 TGACACAATCTTATCCCAGCAAG 58.736 43.478 0.00 0.00 0.00 4.01
1586 1865 4.836125 AACAAGGTCTGCACTACATTTG 57.164 40.909 0.00 0.00 0.00 2.32
1597 1885 5.649557 TGACAACATTTGAAACAAGGTCTG 58.350 37.500 0.00 0.00 0.00 3.51
1644 1932 0.971386 CAGGTCAGGGCTTGCAAAAT 59.029 50.000 0.00 0.00 0.00 1.82
1645 1933 0.106268 TCAGGTCAGGGCTTGCAAAA 60.106 50.000 0.00 0.00 0.00 2.44
1646 1934 0.823356 GTCAGGTCAGGGCTTGCAAA 60.823 55.000 0.00 0.00 0.00 3.68
1711 2001 6.162079 GCAGCATCTACTAGCAATCTGATAA 58.838 40.000 0.00 0.00 0.00 1.75
1712 2002 5.244626 TGCAGCATCTACTAGCAATCTGATA 59.755 40.000 0.00 0.00 31.42 2.15
1725 2015 5.289675 CAGTTAACACTACTGCAGCATCTAC 59.710 44.000 15.27 2.29 36.88 2.59
1742 2121 5.643664 AGAACGTTTTTGGGTTCAGTTAAC 58.356 37.500 0.46 0.00 43.79 2.01
1758 2137 7.009174 GTCATCACAACAATGAAAAAGAACGTT 59.991 33.333 0.00 0.00 35.04 3.99
1759 2138 6.472163 GTCATCACAACAATGAAAAAGAACGT 59.528 34.615 0.00 0.00 35.04 3.99
1764 2143 5.693104 CCCTGTCATCACAACAATGAAAAAG 59.307 40.000 0.00 0.00 35.04 2.27
1767 2146 3.573538 CCCCTGTCATCACAACAATGAAA 59.426 43.478 0.00 0.00 35.04 2.69
1770 2149 1.203052 GCCCCTGTCATCACAACAATG 59.797 52.381 0.00 0.00 29.82 2.82
1771 2150 1.203038 TGCCCCTGTCATCACAACAAT 60.203 47.619 0.00 0.00 29.82 2.71
1908 2287 3.222354 GAACACCACCGACTCGCCT 62.222 63.158 0.00 0.00 0.00 5.52
2313 2692 1.298340 CGGGTTGGCATACTGACCA 59.702 57.895 7.54 0.00 33.81 4.02
2316 2695 1.298340 CACCGGGTTGGCATACTGA 59.702 57.895 6.32 0.00 43.94 3.41
2485 2864 7.961351 AGAGATGATAATTAAGGGTGTGAGAG 58.039 38.462 0.00 0.00 0.00 3.20
2489 2868 7.871973 CAGAGAGAGATGATAATTAAGGGTGTG 59.128 40.741 0.00 0.00 0.00 3.82
2517 2896 7.832685 TCTTGAGAGACATGGATGAATTTCATT 59.167 33.333 12.96 0.00 37.20 2.57
2527 2906 5.189342 ACACAAGATCTTGAGAGACATGGAT 59.811 40.000 36.15 11.13 42.93 3.41
2590 2971 3.338249 AGTGTCATTCAATCTTGGGACG 58.662 45.455 0.00 0.00 31.52 4.79
2625 3013 8.359642 GGCACTATATATTGAAAAATTGCTGGA 58.640 33.333 4.36 0.00 0.00 3.86
2674 3062 5.809562 CACGAGCTAATCAAAACAGATCTCT 59.190 40.000 0.00 0.00 0.00 3.10
2675 3063 5.578727 ACACGAGCTAATCAAAACAGATCTC 59.421 40.000 0.00 0.00 0.00 2.75
2676 3064 5.482908 ACACGAGCTAATCAAAACAGATCT 58.517 37.500 0.00 0.00 0.00 2.75
2677 3065 5.348724 TGACACGAGCTAATCAAAACAGATC 59.651 40.000 0.00 0.00 0.00 2.75
2678 3066 5.237815 TGACACGAGCTAATCAAAACAGAT 58.762 37.500 0.00 0.00 0.00 2.90
2679 3067 4.627058 TGACACGAGCTAATCAAAACAGA 58.373 39.130 0.00 0.00 0.00 3.41
2680 3068 4.449068 ACTGACACGAGCTAATCAAAACAG 59.551 41.667 0.00 0.00 0.00 3.16
2681 3069 4.377021 ACTGACACGAGCTAATCAAAACA 58.623 39.130 0.00 0.00 0.00 2.83
2682 3070 4.992381 ACTGACACGAGCTAATCAAAAC 57.008 40.909 0.00 0.00 0.00 2.43
2683 3071 6.480651 TGTAAACTGACACGAGCTAATCAAAA 59.519 34.615 0.00 0.00 0.00 2.44
2684 3072 5.986741 TGTAAACTGACACGAGCTAATCAAA 59.013 36.000 0.00 0.00 0.00 2.69
2690 3078 3.845178 CCATGTAAACTGACACGAGCTA 58.155 45.455 0.00 0.00 30.52 3.32
2695 3083 2.143122 AGTGCCATGTAAACTGACACG 58.857 47.619 0.00 0.00 30.52 4.49
2699 3087 6.070824 TCAGAGATAAGTGCCATGTAAACTGA 60.071 38.462 0.00 0.00 0.00 3.41
2748 3142 0.798776 CAAACGGTTAGCAGGAGCAG 59.201 55.000 0.00 0.00 45.49 4.24
2862 3256 0.747283 AGCAGCAGCAGCATTAGACC 60.747 55.000 12.92 0.00 45.49 3.85
2863 3257 0.377554 CAGCAGCAGCAGCATTAGAC 59.622 55.000 12.92 0.00 45.49 2.59
2864 3258 2.776659 CAGCAGCAGCAGCATTAGA 58.223 52.632 12.92 0.00 45.49 2.10
2871 3271 2.820479 GGAGAGCAGCAGCAGCAG 60.820 66.667 12.92 0.00 45.49 4.24
2882 3282 2.817396 GCCACGAAGCTGGAGAGC 60.817 66.667 0.00 0.00 46.64 4.09
2887 3287 2.144833 TTGCAATGCCACGAAGCTGG 62.145 55.000 1.53 0.00 33.07 4.85
2913 3313 0.401738 CCAATCAGTCACACTGGGGT 59.598 55.000 3.86 0.00 45.94 4.95
2944 3344 4.272991 GTCAGCTTGCTCTTGGATGATTAG 59.727 45.833 0.00 0.00 0.00 1.73
3063 3467 5.538813 TCAAATGGTACTGAGTACTGACTGT 59.461 40.000 20.86 0.00 38.85 3.55
3074 3478 9.817809 GTATAACTCTCATTCAAATGGTACTGA 57.182 33.333 3.05 0.00 37.03 3.41
3075 3479 9.599866 TGTATAACTCTCATTCAAATGGTACTG 57.400 33.333 3.05 0.00 37.03 2.74
3076 3480 9.823647 CTGTATAACTCTCATTCAAATGGTACT 57.176 33.333 3.05 0.00 37.03 2.73
3077 3481 9.817809 TCTGTATAACTCTCATTCAAATGGTAC 57.182 33.333 3.05 0.00 37.03 3.34
3079 3483 8.762645 TCTCTGTATAACTCTCATTCAAATGGT 58.237 33.333 3.05 0.00 37.03 3.55
3080 3484 9.775854 ATCTCTGTATAACTCTCATTCAAATGG 57.224 33.333 3.05 0.00 37.03 3.16
3135 3541 6.282930 AGATGATTAGAAAAGCAGAGAGAGC 58.717 40.000 0.00 0.00 33.84 4.09
3193 3599 7.229907 ACTTTCGGAATTGTGGTAGTTTTATGT 59.770 33.333 0.00 0.00 0.00 2.29
3204 3612 5.238583 AGAAGAGTACTTTCGGAATTGTGG 58.761 41.667 0.00 0.00 36.39 4.17
3205 3613 7.091443 ACTAGAAGAGTACTTTCGGAATTGTG 58.909 38.462 0.00 0.00 36.27 3.33
3206 3614 7.229581 ACTAGAAGAGTACTTTCGGAATTGT 57.770 36.000 0.00 0.00 36.27 2.71
3207 3615 6.752815 GGACTAGAAGAGTACTTTCGGAATTG 59.247 42.308 0.00 0.00 39.06 2.32
3208 3616 6.127394 GGGACTAGAAGAGTACTTTCGGAATT 60.127 42.308 0.00 0.00 39.28 2.17
3209 3617 5.360429 GGGACTAGAAGAGTACTTTCGGAAT 59.640 44.000 0.00 0.00 39.28 3.01
3210 3618 4.704057 GGGACTAGAAGAGTACTTTCGGAA 59.296 45.833 0.00 0.00 39.28 4.30
3211 3619 4.268359 GGGACTAGAAGAGTACTTTCGGA 58.732 47.826 0.00 0.00 39.28 4.55
3212 3620 3.065095 CGGGACTAGAAGAGTACTTTCGG 59.935 52.174 0.00 5.00 39.28 4.30
3213 3621 3.937706 TCGGGACTAGAAGAGTACTTTCG 59.062 47.826 0.00 0.00 39.28 3.46
3214 3622 4.201940 GCTCGGGACTAGAAGAGTACTTTC 60.202 50.000 0.00 3.42 39.28 2.62
3215 3623 3.695556 GCTCGGGACTAGAAGAGTACTTT 59.304 47.826 0.00 0.00 39.28 2.66
3216 3624 3.054213 AGCTCGGGACTAGAAGAGTACTT 60.054 47.826 0.00 0.00 39.28 2.24
3217 3625 2.506644 AGCTCGGGACTAGAAGAGTACT 59.493 50.000 0.00 0.00 39.28 2.73
3218 3626 2.874086 GAGCTCGGGACTAGAAGAGTAC 59.126 54.545 0.00 0.00 39.06 2.73
3219 3627 2.504585 TGAGCTCGGGACTAGAAGAGTA 59.495 50.000 9.64 0.00 39.06 2.59
3220 3628 1.282447 TGAGCTCGGGACTAGAAGAGT 59.718 52.381 9.64 0.00 42.90 3.24
3221 3629 2.045561 TGAGCTCGGGACTAGAAGAG 57.954 55.000 9.64 0.59 0.00 2.85
3222 3630 2.509166 TTGAGCTCGGGACTAGAAGA 57.491 50.000 9.64 0.00 0.00 2.87
3223 3631 3.131223 TCATTTGAGCTCGGGACTAGAAG 59.869 47.826 9.64 0.00 0.00 2.85
3224 3632 3.096852 TCATTTGAGCTCGGGACTAGAA 58.903 45.455 9.64 0.00 0.00 2.10
3225 3633 2.690497 CTCATTTGAGCTCGGGACTAGA 59.310 50.000 9.64 0.00 35.13 2.43
3226 3634 3.090952 CTCATTTGAGCTCGGGACTAG 57.909 52.381 9.64 0.00 35.13 2.57
3237 3645 1.734465 GTTCACCCGAGCTCATTTGAG 59.266 52.381 15.40 3.13 44.75 3.02
3238 3646 1.071542 TGTTCACCCGAGCTCATTTGA 59.928 47.619 15.40 9.18 0.00 2.69
3239 3647 1.466167 CTGTTCACCCGAGCTCATTTG 59.534 52.381 15.40 6.81 0.00 2.32
3240 3648 1.072331 ACTGTTCACCCGAGCTCATTT 59.928 47.619 15.40 0.00 0.00 2.32
3241 3649 0.687354 ACTGTTCACCCGAGCTCATT 59.313 50.000 15.40 0.00 0.00 2.57
3242 3650 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
3243 3651 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
3244 3652 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
3245 3653 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
3283 3691 9.673454 GTTTGTCACTATAAAAGTTCGGAATTT 57.327 29.630 0.00 0.00 35.76 1.82
3284 3692 8.842280 TGTTTGTCACTATAAAAGTTCGGAATT 58.158 29.630 0.00 0.00 35.76 2.17
3285 3693 8.385898 TGTTTGTCACTATAAAAGTTCGGAAT 57.614 30.769 0.00 0.00 35.76 3.01
3286 3694 7.789273 TGTTTGTCACTATAAAAGTTCGGAA 57.211 32.000 0.00 0.00 35.76 4.30
3287 3695 7.972832 ATGTTTGTCACTATAAAAGTTCGGA 57.027 32.000 0.00 0.00 35.76 4.55
3288 3696 8.286800 TCAATGTTTGTCACTATAAAAGTTCGG 58.713 33.333 0.00 0.00 35.76 4.30
3289 3697 9.103048 GTCAATGTTTGTCACTATAAAAGTTCG 57.897 33.333 0.00 0.00 35.76 3.95
3290 3698 9.944663 TGTCAATGTTTGTCACTATAAAAGTTC 57.055 29.630 0.00 0.00 35.76 3.01
3298 3706 9.651913 AAAACTTTTGTCAATGTTTGTCACTAT 57.348 25.926 14.10 0.47 39.19 2.12
3299 3707 9.134734 GAAAACTTTTGTCAATGTTTGTCACTA 57.865 29.630 14.10 0.00 39.19 2.74
3300 3708 7.655328 TGAAAACTTTTGTCAATGTTTGTCACT 59.345 29.630 14.10 3.35 39.19 3.41
3301 3709 7.791949 TGAAAACTTTTGTCAATGTTTGTCAC 58.208 30.769 14.10 9.23 39.19 3.67
3302 3710 7.953158 TGAAAACTTTTGTCAATGTTTGTCA 57.047 28.000 14.10 14.83 39.19 3.58
3303 3711 7.474025 CGTTGAAAACTTTTGTCAATGTTTGTC 59.526 33.333 14.10 13.36 46.99 3.18
3304 3712 7.287229 CGTTGAAAACTTTTGTCAATGTTTGT 58.713 30.769 14.10 7.78 46.99 2.83
3305 3713 6.246125 GCGTTGAAAACTTTTGTCAATGTTTG 59.754 34.615 14.10 6.41 46.99 2.93
3306 3714 6.147000 AGCGTTGAAAACTTTTGTCAATGTTT 59.853 30.769 11.10 9.87 46.99 2.83
3307 3715 5.637387 AGCGTTGAAAACTTTTGTCAATGTT 59.363 32.000 11.10 4.41 46.99 2.71
3308 3716 5.167845 AGCGTTGAAAACTTTTGTCAATGT 58.832 33.333 11.10 0.00 46.99 2.71
3309 3717 5.701029 AGCGTTGAAAACTTTTGTCAATG 57.299 34.783 6.66 6.66 46.99 2.82
3310 3718 5.445806 GCAAGCGTTGAAAACTTTTGTCAAT 60.446 36.000 0.00 0.00 46.99 2.57
3311 3719 4.143221 GCAAGCGTTGAAAACTTTTGTCAA 60.143 37.500 0.00 0.00 46.99 3.18
3312 3720 3.366422 GCAAGCGTTGAAAACTTTTGTCA 59.634 39.130 0.00 0.00 46.99 3.58
3313 3721 3.366422 TGCAAGCGTTGAAAACTTTTGTC 59.634 39.130 0.00 0.00 46.99 3.18
3314 3722 3.321497 TGCAAGCGTTGAAAACTTTTGT 58.679 36.364 0.00 0.00 46.99 2.83
3315 3723 3.987807 TGCAAGCGTTGAAAACTTTTG 57.012 38.095 0.00 0.00 46.99 2.44
3316 3724 4.999751 TTTGCAAGCGTTGAAAACTTTT 57.000 31.818 0.00 0.00 46.99 2.27
3317 3725 4.999751 TTTTGCAAGCGTTGAAAACTTT 57.000 31.818 0.00 0.00 46.99 2.66
3318 3726 4.629200 TCATTTTGCAAGCGTTGAAAACTT 59.371 33.333 0.00 0.00 46.99 2.66
3319 3727 4.180057 TCATTTTGCAAGCGTTGAAAACT 58.820 34.783 0.00 0.00 46.99 2.66
3320 3728 4.513000 TCATTTTGCAAGCGTTGAAAAC 57.487 36.364 0.00 0.00 45.31 2.43
3321 3729 4.807834 TCATCATTTTGCAAGCGTTGAAAA 59.192 33.333 0.00 1.84 36.41 2.29
3322 3730 4.366586 TCATCATTTTGCAAGCGTTGAAA 58.633 34.783 0.00 0.00 0.00 2.69
3323 3731 3.974912 TCATCATTTTGCAAGCGTTGAA 58.025 36.364 0.00 0.00 0.00 2.69
3324 3732 3.639716 TCATCATTTTGCAAGCGTTGA 57.360 38.095 0.00 2.36 0.00 3.18
3325 3733 4.914312 AATCATCATTTTGCAAGCGTTG 57.086 36.364 0.00 0.00 0.00 4.10
3326 3734 5.927954 AAAATCATCATTTTGCAAGCGTT 57.072 30.435 0.00 0.00 40.16 4.84
3352 3760 6.207810 ACATTTGTAGAAGCCGTGGATAAAAA 59.792 34.615 0.00 0.00 0.00 1.94
3353 3761 5.708230 ACATTTGTAGAAGCCGTGGATAAAA 59.292 36.000 0.00 0.00 0.00 1.52
3354 3762 5.250200 ACATTTGTAGAAGCCGTGGATAAA 58.750 37.500 0.00 0.00 0.00 1.40
3355 3763 4.839121 ACATTTGTAGAAGCCGTGGATAA 58.161 39.130 0.00 0.00 0.00 1.75
3356 3764 4.439057 GACATTTGTAGAAGCCGTGGATA 58.561 43.478 0.00 0.00 0.00 2.59
3357 3765 3.270877 GACATTTGTAGAAGCCGTGGAT 58.729 45.455 0.00 0.00 0.00 3.41
3358 3766 2.695359 GACATTTGTAGAAGCCGTGGA 58.305 47.619 0.00 0.00 0.00 4.02
3359 3767 1.393539 CGACATTTGTAGAAGCCGTGG 59.606 52.381 0.00 0.00 0.00 4.94
3360 3768 2.066262 ACGACATTTGTAGAAGCCGTG 58.934 47.619 0.00 0.00 0.00 4.94
3361 3769 2.450609 ACGACATTTGTAGAAGCCGT 57.549 45.000 0.00 0.00 0.00 5.68
3362 3770 3.185594 TCAAACGACATTTGTAGAAGCCG 59.814 43.478 0.00 0.00 46.70 5.52
3363 3771 4.742438 TCAAACGACATTTGTAGAAGCC 57.258 40.909 0.00 0.00 46.70 4.35
3364 3772 4.613031 GCTTCAAACGACATTTGTAGAAGC 59.387 41.667 5.01 13.59 44.39 3.86
3365 3773 5.848036 CAGCTTCAAACGACATTTGTAGAAG 59.152 40.000 5.01 0.00 44.39 2.85
3366 3774 5.525745 TCAGCTTCAAACGACATTTGTAGAA 59.474 36.000 5.01 0.00 44.39 2.10
3367 3775 5.053811 TCAGCTTCAAACGACATTTGTAGA 58.946 37.500 5.01 0.00 44.39 2.59
3368 3776 5.342806 TCAGCTTCAAACGACATTTGTAG 57.657 39.130 0.00 0.00 46.70 2.74
3369 3777 5.743026 TTCAGCTTCAAACGACATTTGTA 57.257 34.783 0.00 0.00 46.70 2.41
3370 3778 4.630894 TTCAGCTTCAAACGACATTTGT 57.369 36.364 0.00 0.00 46.70 2.83
3372 3780 7.401080 CAAAATTTCAGCTTCAAACGACATTT 58.599 30.769 0.00 0.00 0.00 2.32
3373 3781 6.509997 GCAAAATTTCAGCTTCAAACGACATT 60.510 34.615 7.99 0.00 0.00 2.71
3374 3782 5.050837 GCAAAATTTCAGCTTCAAACGACAT 60.051 36.000 7.99 0.00 0.00 3.06
3375 3783 4.267452 GCAAAATTTCAGCTTCAAACGACA 59.733 37.500 7.99 0.00 0.00 4.35
3376 3784 4.267452 TGCAAAATTTCAGCTTCAAACGAC 59.733 37.500 14.34 0.00 0.00 4.34
3377 3785 4.428209 TGCAAAATTTCAGCTTCAAACGA 58.572 34.783 14.34 0.00 0.00 3.85
3378 3786 4.775440 TGCAAAATTTCAGCTTCAAACG 57.225 36.364 14.34 0.00 0.00 3.60
3379 3787 4.965762 GCTTGCAAAATTTCAGCTTCAAAC 59.034 37.500 14.34 0.00 0.00 2.93
3380 3788 4.260294 CGCTTGCAAAATTTCAGCTTCAAA 60.260 37.500 14.34 0.00 0.00 2.69
3381 3789 3.245754 CGCTTGCAAAATTTCAGCTTCAA 59.754 39.130 14.34 3.19 0.00 2.69
3382 3790 2.796031 CGCTTGCAAAATTTCAGCTTCA 59.204 40.909 14.34 1.77 0.00 3.02
3383 3791 2.410646 GCGCTTGCAAAATTTCAGCTTC 60.411 45.455 14.34 5.30 38.92 3.86
3384 3792 1.528161 GCGCTTGCAAAATTTCAGCTT 59.472 42.857 14.34 0.00 38.92 3.74
3385 3793 1.142474 GCGCTTGCAAAATTTCAGCT 58.858 45.000 14.34 0.00 38.92 4.24
3386 3794 0.164432 GGCGCTTGCAAAATTTCAGC 59.836 50.000 7.64 8.24 41.71 4.26
3387 3795 0.435769 CGGCGCTTGCAAAATTTCAG 59.564 50.000 7.64 0.00 41.71 3.02
3388 3796 0.031314 TCGGCGCTTGCAAAATTTCA 59.969 45.000 7.64 0.00 41.71 2.69
3389 3797 1.135867 TTCGGCGCTTGCAAAATTTC 58.864 45.000 7.64 0.00 41.71 2.17
3390 3798 1.576356 TTTCGGCGCTTGCAAAATTT 58.424 40.000 7.64 0.00 41.71 1.82
3391 3799 1.260297 GTTTTCGGCGCTTGCAAAATT 59.740 42.857 7.64 0.00 41.71 1.82
3392 3800 0.858583 GTTTTCGGCGCTTGCAAAAT 59.141 45.000 7.64 0.00 41.71 1.82
3393 3801 0.179124 AGTTTTCGGCGCTTGCAAAA 60.179 45.000 7.64 0.00 41.71 2.44
3394 3802 0.179124 AAGTTTTCGGCGCTTGCAAA 60.179 45.000 7.64 0.16 41.71 3.68
3395 3803 0.179124 AAAGTTTTCGGCGCTTGCAA 60.179 45.000 7.64 0.00 41.71 4.08
3396 3804 0.179124 AAAAGTTTTCGGCGCTTGCA 60.179 45.000 7.64 0.00 41.71 4.08
3397 3805 0.229500 CAAAAGTTTTCGGCGCTTGC 59.771 50.000 7.64 0.00 38.11 4.01
3398 3806 1.516864 GACAAAAGTTTTCGGCGCTTG 59.483 47.619 7.64 2.69 0.00 4.01
3399 3807 1.133407 TGACAAAAGTTTTCGGCGCTT 59.867 42.857 7.64 0.00 0.00 4.68
3400 3808 0.736053 TGACAAAAGTTTTCGGCGCT 59.264 45.000 7.64 0.00 0.00 5.92
3401 3809 1.551145 TTGACAAAAGTTTTCGGCGC 58.449 45.000 0.00 0.00 0.00 6.53
3402 3810 3.112580 ACATTGACAAAAGTTTTCGGCG 58.887 40.909 0.00 0.00 0.00 6.46
3403 3811 5.163903 ACAAACATTGACAAAAGTTTTCGGC 60.164 36.000 15.43 0.00 35.58 5.54
3404 3812 6.090088 TGACAAACATTGACAAAAGTTTTCGG 59.910 34.615 15.43 9.83 35.58 4.30
3405 3813 6.947680 GTGACAAACATTGACAAAAGTTTTCG 59.052 34.615 15.43 10.32 35.58 3.46
3406 3814 8.017587 AGTGACAAACATTGACAAAAGTTTTC 57.982 30.769 15.43 15.33 35.58 2.29
3407 3815 7.961325 AGTGACAAACATTGACAAAAGTTTT 57.039 28.000 15.43 0.00 35.58 2.43
3408 3816 9.651913 ATTAGTGACAAACATTGACAAAAGTTT 57.348 25.926 13.35 13.35 37.61 2.66
3409 3817 9.651913 AATTAGTGACAAACATTGACAAAAGTT 57.348 25.926 0.00 0.00 37.10 2.66
3410 3818 9.651913 AAATTAGTGACAAACATTGACAAAAGT 57.348 25.926 0.00 0.00 37.10 2.66
3450 3858 8.160521 TCGGATGAACAGTAAATTCAGAAAAA 57.839 30.769 0.00 0.00 39.36 1.94
3451 3859 7.573096 GCTCGGATGAACAGTAAATTCAGAAAA 60.573 37.037 0.00 0.00 39.36 2.29
3452 3860 6.128282 GCTCGGATGAACAGTAAATTCAGAAA 60.128 38.462 0.00 0.00 39.36 2.52
3453 3861 5.351465 GCTCGGATGAACAGTAAATTCAGAA 59.649 40.000 0.00 0.00 39.36 3.02
3454 3862 4.870426 GCTCGGATGAACAGTAAATTCAGA 59.130 41.667 0.00 0.00 39.36 3.27
3455 3863 4.872691 AGCTCGGATGAACAGTAAATTCAG 59.127 41.667 0.00 0.00 39.36 3.02
3456 3864 4.832248 AGCTCGGATGAACAGTAAATTCA 58.168 39.130 0.00 0.00 40.25 2.57
3457 3865 4.870426 TGAGCTCGGATGAACAGTAAATTC 59.130 41.667 9.64 0.00 0.00 2.17
3458 3866 4.832248 TGAGCTCGGATGAACAGTAAATT 58.168 39.130 9.64 0.00 0.00 1.82
3459 3867 4.471904 TGAGCTCGGATGAACAGTAAAT 57.528 40.909 9.64 0.00 0.00 1.40
3460 3868 3.953712 TGAGCTCGGATGAACAGTAAA 57.046 42.857 9.64 0.00 0.00 2.01
3461 3869 5.301805 TCATATGAGCTCGGATGAACAGTAA 59.698 40.000 21.79 4.17 0.00 2.24
3462 3870 4.827284 TCATATGAGCTCGGATGAACAGTA 59.173 41.667 21.79 4.74 0.00 2.74
3463 3871 3.638627 TCATATGAGCTCGGATGAACAGT 59.361 43.478 21.79 0.00 0.00 3.55
3464 3872 4.236147 CTCATATGAGCTCGGATGAACAG 58.764 47.826 23.28 13.15 35.13 3.16
3465 3873 4.248691 CTCATATGAGCTCGGATGAACA 57.751 45.455 23.28 8.70 35.13 3.18
3486 3894 2.080286 TGGAGTTTCTAAGCACGAGC 57.920 50.000 0.00 0.00 42.56 5.03
3487 3895 3.589988 ACATGGAGTTTCTAAGCACGAG 58.410 45.455 0.00 0.00 0.00 4.18
3488 3896 3.585862 GACATGGAGTTTCTAAGCACGA 58.414 45.455 0.00 0.00 0.00 4.35
3489 3897 2.673368 GGACATGGAGTTTCTAAGCACG 59.327 50.000 0.00 0.00 0.00 5.34
3490 3898 3.010420 GGGACATGGAGTTTCTAAGCAC 58.990 50.000 0.00 0.00 0.00 4.40
3491 3899 2.026262 GGGGACATGGAGTTTCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
3492 3900 2.026262 TGGGGACATGGAGTTTCTAAGC 60.026 50.000 0.00 0.00 33.40 3.09
3493 3901 3.009033 TGTGGGGACATGGAGTTTCTAAG 59.991 47.826 0.00 0.00 46.14 2.18
3494 3902 2.983192 TGTGGGGACATGGAGTTTCTAA 59.017 45.455 0.00 0.00 46.14 2.10
3495 3903 2.626785 TGTGGGGACATGGAGTTTCTA 58.373 47.619 0.00 0.00 46.14 2.10
3496 3904 1.444933 TGTGGGGACATGGAGTTTCT 58.555 50.000 0.00 0.00 46.14 2.52
3497 3905 2.286365 TTGTGGGGACATGGAGTTTC 57.714 50.000 0.00 0.00 46.14 2.78
3498 3906 2.999185 ATTGTGGGGACATGGAGTTT 57.001 45.000 0.00 0.00 46.14 2.66
3499 3907 2.807676 GAATTGTGGGGACATGGAGTT 58.192 47.619 0.00 0.00 46.14 3.01
3500 3908 1.340017 CGAATTGTGGGGACATGGAGT 60.340 52.381 0.00 0.00 46.14 3.85
3501 3909 1.382522 CGAATTGTGGGGACATGGAG 58.617 55.000 0.00 0.00 46.14 3.86
3502 3910 0.034574 CCGAATTGTGGGGACATGGA 60.035 55.000 0.00 0.00 46.14 3.41
3503 3911 1.037030 CCCGAATTGTGGGGACATGG 61.037 60.000 0.00 0.00 45.69 3.66
3504 3912 1.666209 GCCCGAATTGTGGGGACATG 61.666 60.000 13.05 0.00 45.69 3.21
3505 3913 1.379843 GCCCGAATTGTGGGGACAT 60.380 57.895 13.05 0.00 45.69 3.06
3506 3914 1.202099 TAGCCCGAATTGTGGGGACA 61.202 55.000 13.05 0.00 45.69 4.02
3507 3915 0.182775 ATAGCCCGAATTGTGGGGAC 59.817 55.000 13.05 4.13 45.69 4.46
3508 3916 0.182537 CATAGCCCGAATTGTGGGGA 59.817 55.000 13.05 0.00 45.69 4.81
3551 3959 2.950975 GTGGTGGTTTTCCGGAACTTTA 59.049 45.455 18.64 0.00 44.36 1.85
3555 3963 1.104630 TTGTGGTGGTTTTCCGGAAC 58.895 50.000 18.64 7.13 44.36 3.62
3556 3964 1.751924 CTTTGTGGTGGTTTTCCGGAA 59.248 47.619 14.35 14.35 44.36 4.30
3557 3965 1.394618 CTTTGTGGTGGTTTTCCGGA 58.605 50.000 0.00 0.00 44.36 5.14
3558 3966 0.249280 GCTTTGTGGTGGTTTTCCGG 60.249 55.000 0.00 0.00 44.36 5.14
3560 3968 1.754226 TCAGCTTTGTGGTGGTTTTCC 59.246 47.619 0.00 0.00 43.76 3.13
3561 3969 2.427095 AGTCAGCTTTGTGGTGGTTTTC 59.573 45.455 0.00 0.00 43.76 2.29
3567 3975 2.430465 AGCATAGTCAGCTTTGTGGTG 58.570 47.619 0.00 0.00 39.87 4.17
3577 3985 4.742167 CCGAACTGTCATAAGCATAGTCAG 59.258 45.833 0.00 0.00 0.00 3.51
3598 4051 4.275508 CCCTGATGGATGGGCCCG 62.276 72.222 19.37 0.00 36.61 6.13
3617 4070 4.512944 CAGCGTCTATATCTTTTGCCATGT 59.487 41.667 0.00 0.00 0.00 3.21
3618 4071 4.612259 GCAGCGTCTATATCTTTTGCCATG 60.612 45.833 0.00 0.00 0.00 3.66
3619 4072 3.499918 GCAGCGTCTATATCTTTTGCCAT 59.500 43.478 0.00 0.00 0.00 4.40
3626 4080 6.392625 TTTGACTAGCAGCGTCTATATCTT 57.607 37.500 2.58 0.00 32.70 2.40
3652 4106 7.653713 CGATAGACAGGCATTTGACTATAAACT 59.346 37.037 6.93 0.00 36.60 2.66
3670 4124 2.279502 GACGGGCAGCACGATAGACA 62.280 60.000 27.37 0.00 41.38 3.41
3735 4236 0.600255 GTCGGCATGGGAAGGATACG 60.600 60.000 0.00 0.00 46.39 3.06
3737 4238 0.692756 TGGTCGGCATGGGAAGGATA 60.693 55.000 0.00 0.00 0.00 2.59
3738 4239 1.987807 CTGGTCGGCATGGGAAGGAT 61.988 60.000 0.00 0.00 0.00 3.24
3739 4240 2.609299 TGGTCGGCATGGGAAGGA 60.609 61.111 0.00 0.00 0.00 3.36
3742 4243 2.609299 TCCTGGTCGGCATGGGAA 60.609 61.111 0.00 0.00 0.00 3.97
3842 4516 1.280457 GGGTTGTGGAGGAGACAGAT 58.720 55.000 0.00 0.00 0.00 2.90
3843 4517 1.185618 CGGGTTGTGGAGGAGACAGA 61.186 60.000 0.00 0.00 0.00 3.41
3845 4519 0.544357 ATCGGGTTGTGGAGGAGACA 60.544 55.000 0.00 0.00 0.00 3.41
3883 4557 2.230750 TCATTTCATGCATTGGCGTTCA 59.769 40.909 0.00 0.00 45.35 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.