Multiple sequence alignment - TraesCS2D01G581100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G581100 chr2D 100.000 2378 0 0 1 2378 642938186 642940563 0.000000e+00 4392
1 TraesCS2D01G581100 chr2D 91.045 134 10 2 2246 2377 642443428 642443561 1.880000e-41 180
2 TraesCS2D01G581100 chr7D 98.854 2269 9 1 1 2252 579015963 579018231 0.000000e+00 4030
3 TraesCS2D01G581100 chrUn 98.853 2266 6 2 4 2252 237257442 237255180 0.000000e+00 4023
4 TraesCS2D01G581100 chrUn 97.444 2269 25 2 1 2252 182414625 182412373 0.000000e+00 3838
5 TraesCS2D01G581100 chrUn 98.211 1230 5 1 1 1213 399834733 399833504 0.000000e+00 2134
6 TraesCS2D01G581100 chrUn 96.146 467 1 1 1 450 448235055 448235521 0.000000e+00 747
7 TraesCS2D01G581100 chr1A 98.151 2272 22 2 1 2252 238109360 238107089 0.000000e+00 3945
8 TraesCS2D01G581100 chr1A 98.151 2272 22 2 1 2252 238154745 238152474 0.000000e+00 3945
9 TraesCS2D01G581100 chr1A 97.668 1501 17 2 1 1483 278506731 278508231 0.000000e+00 2562
10 TraesCS2D01G581100 chr5A 98.107 2272 23 2 1 2252 16577535 16575264 0.000000e+00 3940
11 TraesCS2D01G581100 chr4D 98.105 2269 26 1 1 2252 123520451 123518183 0.000000e+00 3936
12 TraesCS2D01G581100 chr4D 98.011 1307 8 3 1 1289 123663942 123662636 0.000000e+00 2254
13 TraesCS2D01G581100 chr7A 97.975 2272 26 2 1 2252 60328625 60326354 0.000000e+00 3923
14 TraesCS2D01G581100 chr6B 97.885 2269 30 2 1 2252 596656921 596654654 0.000000e+00 3908
15 TraesCS2D01G581100 chr3B 97.403 2272 37 4 1 2252 483372701 483374970 0.000000e+00 3849
16 TraesCS2D01G581100 chr2A 91.045 134 10 2 2246 2377 767570362 767570495 1.880000e-41 180
17 TraesCS2D01G581100 chr2B 89.552 134 12 1 2246 2377 799253013 799252880 4.070000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G581100 chr2D 642938186 642940563 2377 False 4392 4392 100.000 1 2378 1 chr2D.!!$F2 2377
1 TraesCS2D01G581100 chr7D 579015963 579018231 2268 False 4030 4030 98.854 1 2252 1 chr7D.!!$F1 2251
2 TraesCS2D01G581100 chrUn 237255180 237257442 2262 True 4023 4023 98.853 4 2252 1 chrUn.!!$R2 2248
3 TraesCS2D01G581100 chrUn 182412373 182414625 2252 True 3838 3838 97.444 1 2252 1 chrUn.!!$R1 2251
4 TraesCS2D01G581100 chrUn 399833504 399834733 1229 True 2134 2134 98.211 1 1213 1 chrUn.!!$R3 1212
5 TraesCS2D01G581100 chr1A 238107089 238109360 2271 True 3945 3945 98.151 1 2252 1 chr1A.!!$R1 2251
6 TraesCS2D01G581100 chr1A 238152474 238154745 2271 True 3945 3945 98.151 1 2252 1 chr1A.!!$R2 2251
7 TraesCS2D01G581100 chr1A 278506731 278508231 1500 False 2562 2562 97.668 1 1483 1 chr1A.!!$F1 1482
8 TraesCS2D01G581100 chr5A 16575264 16577535 2271 True 3940 3940 98.107 1 2252 1 chr5A.!!$R1 2251
9 TraesCS2D01G581100 chr4D 123518183 123520451 2268 True 3936 3936 98.105 1 2252 1 chr4D.!!$R1 2251
10 TraesCS2D01G581100 chr4D 123662636 123663942 1306 True 2254 2254 98.011 1 1289 1 chr4D.!!$R2 1288
11 TraesCS2D01G581100 chr7A 60326354 60328625 2271 True 3923 3923 97.975 1 2252 1 chr7A.!!$R1 2251
12 TraesCS2D01G581100 chr6B 596654654 596656921 2267 True 3908 3908 97.885 1 2252 1 chr6B.!!$R1 2251
13 TraesCS2D01G581100 chr3B 483372701 483374970 2269 False 3849 3849 97.403 1 2252 1 chr3B.!!$F1 2251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 970 0.40404 AAAAGGGGTGCTTCGGATCA 59.596 50.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2320 0.183731 CCCCAAGTAGATTCCCAGCC 59.816 60.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
948 970 0.404040 AAAAGGGGTGCTTCGGATCA 59.596 50.000 0.00 0.00 0.00 2.92
2252 2280 7.334858 AGGAGATACTCTTCAACAAATCTTCC 58.665 38.462 0.00 0.00 0.00 3.46
2253 2281 6.256757 GGAGATACTCTTCAACAAATCTTCCG 59.743 42.308 0.00 0.00 0.00 4.30
2254 2282 6.936279 AGATACTCTTCAACAAATCTTCCGA 58.064 36.000 0.00 0.00 0.00 4.55
2255 2283 7.038659 AGATACTCTTCAACAAATCTTCCGAG 58.961 38.462 0.00 0.00 0.00 4.63
2256 2284 4.319177 ACTCTTCAACAAATCTTCCGAGG 58.681 43.478 0.00 0.00 0.00 4.63
2257 2285 4.040461 ACTCTTCAACAAATCTTCCGAGGA 59.960 41.667 0.00 0.00 0.00 3.71
2258 2286 5.165961 TCTTCAACAAATCTTCCGAGGAT 57.834 39.130 0.00 0.00 0.00 3.24
2259 2287 4.937620 TCTTCAACAAATCTTCCGAGGATG 59.062 41.667 0.00 0.00 0.00 3.51
2260 2288 3.009723 TCAACAAATCTTCCGAGGATGC 58.990 45.455 0.00 0.00 0.00 3.91
2261 2289 3.012518 CAACAAATCTTCCGAGGATGCT 58.987 45.455 0.00 0.00 0.00 3.79
2262 2290 2.636830 ACAAATCTTCCGAGGATGCTG 58.363 47.619 0.00 0.00 0.00 4.41
2263 2291 2.237143 ACAAATCTTCCGAGGATGCTGA 59.763 45.455 0.00 0.00 0.00 4.26
2264 2292 3.273434 CAAATCTTCCGAGGATGCTGAA 58.727 45.455 0.00 0.00 0.00 3.02
2265 2293 3.634397 AATCTTCCGAGGATGCTGAAA 57.366 42.857 0.00 0.00 0.00 2.69
2266 2294 3.853355 ATCTTCCGAGGATGCTGAAAT 57.147 42.857 0.00 0.00 0.00 2.17
2267 2295 3.634397 TCTTCCGAGGATGCTGAAATT 57.366 42.857 0.00 0.00 0.00 1.82
2268 2296 3.955471 TCTTCCGAGGATGCTGAAATTT 58.045 40.909 0.00 0.00 0.00 1.82
2269 2297 3.941483 TCTTCCGAGGATGCTGAAATTTC 59.059 43.478 11.41 11.41 0.00 2.17
2270 2298 3.634397 TCCGAGGATGCTGAAATTTCT 57.366 42.857 18.64 0.00 0.00 2.52
2271 2299 3.535561 TCCGAGGATGCTGAAATTTCTC 58.464 45.455 18.64 11.00 0.00 2.87
2272 2300 3.198635 TCCGAGGATGCTGAAATTTCTCT 59.801 43.478 18.64 6.99 0.00 3.10
2273 2301 3.944015 CCGAGGATGCTGAAATTTCTCTT 59.056 43.478 18.64 4.79 0.00 2.85
2274 2302 4.397417 CCGAGGATGCTGAAATTTCTCTTT 59.603 41.667 18.64 2.35 0.00 2.52
2275 2303 5.105997 CCGAGGATGCTGAAATTTCTCTTTT 60.106 40.000 18.64 1.01 0.00 2.27
2276 2304 6.026513 CGAGGATGCTGAAATTTCTCTTTTC 58.973 40.000 18.64 9.21 34.40 2.29
2277 2305 6.348786 CGAGGATGCTGAAATTTCTCTTTTCA 60.349 38.462 18.64 8.00 39.96 2.69
2278 2306 7.294017 AGGATGCTGAAATTTCTCTTTTCAA 57.706 32.000 18.64 0.00 41.23 2.69
2279 2307 7.729116 AGGATGCTGAAATTTCTCTTTTCAAA 58.271 30.769 18.64 0.00 41.23 2.69
2280 2308 7.871463 AGGATGCTGAAATTTCTCTTTTCAAAG 59.129 33.333 18.64 5.97 41.23 2.77
2281 2309 7.869429 GGATGCTGAAATTTCTCTTTTCAAAGA 59.131 33.333 18.64 2.07 41.23 2.52
2288 2316 3.000815 TCTTTTCAAAGAGCGCCGT 57.999 47.368 2.29 0.00 39.95 5.68
2289 2317 2.157834 TCTTTTCAAAGAGCGCCGTA 57.842 45.000 2.29 0.00 39.95 4.02
2290 2318 2.695359 TCTTTTCAAAGAGCGCCGTAT 58.305 42.857 2.29 0.00 39.95 3.06
2291 2319 3.071479 TCTTTTCAAAGAGCGCCGTATT 58.929 40.909 2.29 0.00 39.95 1.89
2292 2320 2.892373 TTTCAAAGAGCGCCGTATTG 57.108 45.000 2.29 5.06 0.00 1.90
2293 2321 1.083489 TTCAAAGAGCGCCGTATTGG 58.917 50.000 2.29 0.00 42.50 3.16
2305 2333 2.767505 CCGTATTGGCTGGGAATCTAC 58.232 52.381 0.00 0.00 0.00 2.59
2306 2334 2.368875 CCGTATTGGCTGGGAATCTACT 59.631 50.000 0.00 0.00 0.00 2.57
2307 2335 3.181454 CCGTATTGGCTGGGAATCTACTT 60.181 47.826 0.00 0.00 0.00 2.24
2308 2336 3.809832 CGTATTGGCTGGGAATCTACTTG 59.190 47.826 0.00 0.00 0.00 3.16
2309 2337 2.806945 TTGGCTGGGAATCTACTTGG 57.193 50.000 0.00 0.00 0.00 3.61
2310 2338 0.918983 TGGCTGGGAATCTACTTGGG 59.081 55.000 0.00 0.00 0.00 4.12
2311 2339 0.183731 GGCTGGGAATCTACTTGGGG 59.816 60.000 0.00 0.00 0.00 4.96
2312 2340 0.466372 GCTGGGAATCTACTTGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
2313 2341 0.918983 CTGGGAATCTACTTGGGGCA 59.081 55.000 0.00 0.00 0.00 5.36
2314 2342 0.918983 TGGGAATCTACTTGGGGCAG 59.081 55.000 0.00 0.00 0.00 4.85
2315 2343 0.466372 GGGAATCTACTTGGGGCAGC 60.466 60.000 0.00 0.00 0.00 5.25
2316 2344 0.466372 GGAATCTACTTGGGGCAGCC 60.466 60.000 1.26 1.26 0.00 4.85
2317 2345 0.466372 GAATCTACTTGGGGCAGCCC 60.466 60.000 24.23 24.23 44.51 5.19
2318 2346 2.270874 AATCTACTTGGGGCAGCCCG 62.271 60.000 25.18 13.45 46.66 6.13
2319 2347 4.489771 CTACTTGGGGCAGCCCGG 62.490 72.222 25.18 18.38 46.66 5.73
2334 2362 4.901123 CGGTGTCACGGTGTGGCA 62.901 66.667 8.17 0.00 46.26 4.92
2337 2365 3.860605 TGTCACGGTGTGGCAGCT 61.861 61.111 8.17 0.00 43.49 4.24
2338 2366 2.591715 GTCACGGTGTGGCAGCTT 60.592 61.111 8.17 0.00 38.14 3.74
2339 2367 2.280797 TCACGGTGTGGCAGCTTC 60.281 61.111 8.17 0.00 33.87 3.86
2340 2368 2.591429 CACGGTGTGGCAGCTTCA 60.591 61.111 0.00 0.00 0.00 3.02
2341 2369 2.186160 CACGGTGTGGCAGCTTCAA 61.186 57.895 0.00 0.00 0.00 2.69
2342 2370 1.228245 ACGGTGTGGCAGCTTCAAT 60.228 52.632 0.00 0.00 0.00 2.57
2343 2371 1.210931 CGGTGTGGCAGCTTCAATG 59.789 57.895 0.00 0.00 0.00 2.82
2344 2372 1.236616 CGGTGTGGCAGCTTCAATGA 61.237 55.000 0.00 0.00 0.00 2.57
2345 2373 1.180029 GGTGTGGCAGCTTCAATGAT 58.820 50.000 0.00 0.00 0.00 2.45
2346 2374 2.368439 GGTGTGGCAGCTTCAATGATA 58.632 47.619 0.00 0.00 0.00 2.15
2347 2375 2.098117 GGTGTGGCAGCTTCAATGATAC 59.902 50.000 0.00 0.00 0.00 2.24
2348 2376 2.749076 GTGTGGCAGCTTCAATGATACA 59.251 45.455 0.00 0.00 0.00 2.29
2349 2377 3.191162 GTGTGGCAGCTTCAATGATACAA 59.809 43.478 0.00 0.00 0.00 2.41
2350 2378 3.441222 TGTGGCAGCTTCAATGATACAAG 59.559 43.478 0.00 0.00 0.00 3.16
2351 2379 3.441572 GTGGCAGCTTCAATGATACAAGT 59.558 43.478 0.00 0.00 0.00 3.16
2352 2380 4.635765 GTGGCAGCTTCAATGATACAAGTA 59.364 41.667 0.00 0.00 0.00 2.24
2353 2381 5.123820 GTGGCAGCTTCAATGATACAAGTAA 59.876 40.000 0.00 0.00 0.00 2.24
2354 2382 5.355071 TGGCAGCTTCAATGATACAAGTAAG 59.645 40.000 0.00 0.00 0.00 2.34
2355 2383 5.586243 GGCAGCTTCAATGATACAAGTAAGA 59.414 40.000 0.00 0.00 0.00 2.10
2356 2384 6.238320 GGCAGCTTCAATGATACAAGTAAGAG 60.238 42.308 0.00 0.00 0.00 2.85
2357 2385 6.536582 GCAGCTTCAATGATACAAGTAAGAGA 59.463 38.462 0.00 0.00 0.00 3.10
2358 2386 7.465245 GCAGCTTCAATGATACAAGTAAGAGAC 60.465 40.741 0.00 0.00 0.00 3.36
2359 2387 6.754209 AGCTTCAATGATACAAGTAAGAGACG 59.246 38.462 0.00 0.00 0.00 4.18
2360 2388 6.531948 GCTTCAATGATACAAGTAAGAGACGT 59.468 38.462 0.00 0.00 0.00 4.34
2361 2389 7.063544 GCTTCAATGATACAAGTAAGAGACGTT 59.936 37.037 0.00 0.00 0.00 3.99
2362 2390 8.462143 TTCAATGATACAAGTAAGAGACGTTC 57.538 34.615 0.00 0.00 0.00 3.95
2363 2391 6.745907 TCAATGATACAAGTAAGAGACGTTCG 59.254 38.462 0.00 0.00 0.00 3.95
2364 2392 5.618056 TGATACAAGTAAGAGACGTTCGT 57.382 39.130 0.00 0.00 0.00 3.85
2365 2393 5.625251 TGATACAAGTAAGAGACGTTCGTC 58.375 41.667 16.11 16.11 35.54 4.20
2366 2394 3.279853 ACAAGTAAGAGACGTTCGTCC 57.720 47.619 19.41 12.12 35.90 4.79
2367 2395 2.620115 ACAAGTAAGAGACGTTCGTCCA 59.380 45.455 19.41 2.84 35.90 4.02
2368 2396 2.978489 CAAGTAAGAGACGTTCGTCCAC 59.022 50.000 19.41 14.38 35.90 4.02
2369 2397 1.538950 AGTAAGAGACGTTCGTCCACC 59.461 52.381 19.41 10.63 35.90 4.61
2370 2398 1.538950 GTAAGAGACGTTCGTCCACCT 59.461 52.381 19.41 12.39 35.90 4.00
2371 2399 1.901591 AAGAGACGTTCGTCCACCTA 58.098 50.000 19.41 0.00 35.90 3.08
2372 2400 1.901591 AGAGACGTTCGTCCACCTAA 58.098 50.000 19.41 0.00 35.90 2.69
2373 2401 1.538950 AGAGACGTTCGTCCACCTAAC 59.461 52.381 19.41 5.46 35.90 2.34
2374 2402 1.538950 GAGACGTTCGTCCACCTAACT 59.461 52.381 19.41 1.08 35.90 2.24
2375 2403 1.959282 AGACGTTCGTCCACCTAACTT 59.041 47.619 19.41 0.00 35.90 2.66
2376 2404 2.030451 AGACGTTCGTCCACCTAACTTC 60.030 50.000 19.41 0.00 35.90 3.01
2377 2405 1.682854 ACGTTCGTCCACCTAACTTCA 59.317 47.619 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
948 970 4.470602 CCCTTTCAAAAGTGGTTACTCCT 58.529 43.478 2.09 0.00 35.69 3.69
1148 1170 6.258068 GCTCAACCGTACTTTTGCTATCTTAT 59.742 38.462 0.00 0.00 0.00 1.73
2252 2280 5.557891 AAAGAGAAATTTCAGCATCCTCG 57.442 39.130 19.99 0.00 0.00 4.63
2253 2281 6.917533 TGAAAAGAGAAATTTCAGCATCCTC 58.082 36.000 19.99 7.04 40.75 3.71
2254 2282 6.906157 TGAAAAGAGAAATTTCAGCATCCT 57.094 33.333 19.99 4.61 40.75 3.24
2255 2283 7.869429 TCTTTGAAAAGAGAAATTTCAGCATCC 59.131 33.333 19.99 5.94 44.83 3.51
2256 2284 8.807667 TCTTTGAAAAGAGAAATTTCAGCATC 57.192 30.769 19.99 8.76 44.83 3.91
2270 2298 2.157834 TACGGCGCTCTTTGAAAAGA 57.842 45.000 6.90 5.43 42.41 2.52
2271 2299 3.163594 CAATACGGCGCTCTTTGAAAAG 58.836 45.455 6.90 0.00 37.36 2.27
2272 2300 2.095466 CCAATACGGCGCTCTTTGAAAA 60.095 45.455 6.90 0.00 0.00 2.29
2273 2301 1.466950 CCAATACGGCGCTCTTTGAAA 59.533 47.619 6.90 0.00 0.00 2.69
2274 2302 1.083489 CCAATACGGCGCTCTTTGAA 58.917 50.000 6.90 0.00 0.00 2.69
2275 2303 2.762360 CCAATACGGCGCTCTTTGA 58.238 52.632 6.90 0.00 0.00 2.69
2285 2313 2.368875 AGTAGATTCCCAGCCAATACGG 59.631 50.000 0.00 0.00 38.11 4.02
2286 2314 3.753294 AGTAGATTCCCAGCCAATACG 57.247 47.619 0.00 0.00 0.00 3.06
2287 2315 4.137543 CCAAGTAGATTCCCAGCCAATAC 58.862 47.826 0.00 0.00 0.00 1.89
2288 2316 3.138283 CCCAAGTAGATTCCCAGCCAATA 59.862 47.826 0.00 0.00 0.00 1.90
2289 2317 2.091665 CCCAAGTAGATTCCCAGCCAAT 60.092 50.000 0.00 0.00 0.00 3.16
2290 2318 1.284785 CCCAAGTAGATTCCCAGCCAA 59.715 52.381 0.00 0.00 0.00 4.52
2291 2319 0.918983 CCCAAGTAGATTCCCAGCCA 59.081 55.000 0.00 0.00 0.00 4.75
2292 2320 0.183731 CCCCAAGTAGATTCCCAGCC 59.816 60.000 0.00 0.00 0.00 4.85
2293 2321 0.466372 GCCCCAAGTAGATTCCCAGC 60.466 60.000 0.00 0.00 0.00 4.85
2294 2322 0.918983 TGCCCCAAGTAGATTCCCAG 59.081 55.000 0.00 0.00 0.00 4.45
2295 2323 0.918983 CTGCCCCAAGTAGATTCCCA 59.081 55.000 0.00 0.00 0.00 4.37
2296 2324 0.466372 GCTGCCCCAAGTAGATTCCC 60.466 60.000 0.00 0.00 0.00 3.97
2297 2325 0.466372 GGCTGCCCCAAGTAGATTCC 60.466 60.000 7.66 0.00 0.00 3.01
2298 2326 3.102090 GGCTGCCCCAAGTAGATTC 57.898 57.895 7.66 0.00 0.00 2.52
2317 2345 4.901123 TGCCACACCGTGACACCG 62.901 66.667 5.28 0.00 35.23 4.94
2318 2346 2.972505 CTGCCACACCGTGACACC 60.973 66.667 5.28 0.00 35.23 4.16
2319 2347 3.649986 GCTGCCACACCGTGACAC 61.650 66.667 5.28 0.00 35.23 3.67
2320 2348 3.399105 AAGCTGCCACACCGTGACA 62.399 57.895 5.28 0.00 35.23 3.58
2321 2349 2.591715 AAGCTGCCACACCGTGAC 60.592 61.111 5.28 0.00 35.23 3.67
2322 2350 2.280797 GAAGCTGCCACACCGTGA 60.281 61.111 5.28 0.00 35.23 4.35
2323 2351 1.518056 ATTGAAGCTGCCACACCGTG 61.518 55.000 0.00 0.00 0.00 4.94
2324 2352 1.228245 ATTGAAGCTGCCACACCGT 60.228 52.632 0.00 0.00 0.00 4.83
2325 2353 1.210931 CATTGAAGCTGCCACACCG 59.789 57.895 0.00 0.00 0.00 4.94
2326 2354 1.180029 ATCATTGAAGCTGCCACACC 58.820 50.000 0.00 0.00 0.00 4.16
2327 2355 2.749076 TGTATCATTGAAGCTGCCACAC 59.251 45.455 0.00 0.00 0.00 3.82
2328 2356 3.070476 TGTATCATTGAAGCTGCCACA 57.930 42.857 0.00 0.00 0.00 4.17
2329 2357 3.441572 ACTTGTATCATTGAAGCTGCCAC 59.558 43.478 0.00 0.00 0.00 5.01
2330 2358 3.689347 ACTTGTATCATTGAAGCTGCCA 58.311 40.909 0.00 0.00 0.00 4.92
2331 2359 5.586243 TCTTACTTGTATCATTGAAGCTGCC 59.414 40.000 0.00 0.00 0.00 4.85
2332 2360 6.536582 TCTCTTACTTGTATCATTGAAGCTGC 59.463 38.462 0.00 0.00 0.00 5.25
2333 2361 7.253917 CGTCTCTTACTTGTATCATTGAAGCTG 60.254 40.741 0.00 0.00 0.00 4.24
2334 2362 6.754209 CGTCTCTTACTTGTATCATTGAAGCT 59.246 38.462 0.00 0.00 0.00 3.74
2335 2363 6.531948 ACGTCTCTTACTTGTATCATTGAAGC 59.468 38.462 0.00 0.00 0.00 3.86
2336 2364 8.467402 AACGTCTCTTACTTGTATCATTGAAG 57.533 34.615 0.00 0.00 0.00 3.02
2337 2365 7.272731 CGAACGTCTCTTACTTGTATCATTGAA 59.727 37.037 0.00 0.00 0.00 2.69
2338 2366 6.745907 CGAACGTCTCTTACTTGTATCATTGA 59.254 38.462 0.00 0.00 0.00 2.57
2339 2367 6.527023 ACGAACGTCTCTTACTTGTATCATTG 59.473 38.462 0.00 0.00 0.00 2.82
2340 2368 6.618811 ACGAACGTCTCTTACTTGTATCATT 58.381 36.000 0.00 0.00 0.00 2.57
2341 2369 6.192234 ACGAACGTCTCTTACTTGTATCAT 57.808 37.500 0.00 0.00 0.00 2.45
2342 2370 5.391310 GGACGAACGTCTCTTACTTGTATCA 60.391 44.000 22.98 0.00 44.04 2.15
2343 2371 5.027099 GGACGAACGTCTCTTACTTGTATC 58.973 45.833 22.98 2.40 44.04 2.24
2344 2372 4.456911 TGGACGAACGTCTCTTACTTGTAT 59.543 41.667 22.98 0.00 44.04 2.29
2345 2373 3.814842 TGGACGAACGTCTCTTACTTGTA 59.185 43.478 22.98 0.00 44.04 2.41
2346 2374 2.620115 TGGACGAACGTCTCTTACTTGT 59.380 45.455 22.98 0.00 44.04 3.16
2347 2375 2.978489 GTGGACGAACGTCTCTTACTTG 59.022 50.000 22.98 0.00 44.04 3.16
2348 2376 2.030451 GGTGGACGAACGTCTCTTACTT 60.030 50.000 22.98 0.00 44.04 2.24
2349 2377 1.538950 GGTGGACGAACGTCTCTTACT 59.461 52.381 22.98 0.00 44.04 2.24
2350 2378 1.538950 AGGTGGACGAACGTCTCTTAC 59.461 52.381 22.98 16.71 44.04 2.34
2351 2379 1.901591 AGGTGGACGAACGTCTCTTA 58.098 50.000 22.98 8.18 44.04 2.10
2352 2380 1.901591 TAGGTGGACGAACGTCTCTT 58.098 50.000 22.98 15.85 44.04 2.85
2353 2381 1.538950 GTTAGGTGGACGAACGTCTCT 59.461 52.381 22.98 19.11 44.04 3.10
2354 2382 1.538950 AGTTAGGTGGACGAACGTCTC 59.461 52.381 22.98 16.68 44.04 3.36
2355 2383 1.613836 AGTTAGGTGGACGAACGTCT 58.386 50.000 22.98 9.12 44.04 4.18
2356 2384 2.287788 TGAAGTTAGGTGGACGAACGTC 60.288 50.000 17.33 17.33 41.17 4.34
2357 2385 1.682854 TGAAGTTAGGTGGACGAACGT 59.317 47.619 0.00 0.00 39.36 3.99
2358 2386 2.427232 TGAAGTTAGGTGGACGAACG 57.573 50.000 0.00 0.00 39.36 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.