Multiple sequence alignment - TraesCS2D01G580900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G580900 chr2D 100.000 4329 0 0 1 4329 642869847 642874175 0.000000e+00 7995.0
1 TraesCS2D01G580900 chr2D 93.474 1379 60 17 2180 3541 642441365 642440000 0.000000e+00 2021.0
2 TraesCS2D01G580900 chr2D 93.801 1226 49 12 2180 3385 642478063 642476845 0.000000e+00 1818.0
3 TraesCS2D01G580900 chr2D 89.837 797 71 6 3537 4329 642433685 642432895 0.000000e+00 1014.0
4 TraesCS2D01G580900 chr2D 87.892 223 20 3 3421 3637 642459438 642459659 5.560000e-64 255.0
5 TraesCS2D01G580900 chr2D 89.565 115 10 1 3244 3356 642445845 642445959 1.250000e-30 145.0
6 TraesCS2D01G580900 chr2D 87.719 114 14 0 3940 4053 642509423 642509536 2.720000e-27 134.0
7 TraesCS2D01G580900 chr2D 76.172 256 51 9 2189 2443 381565328 381565082 4.540000e-25 126.0
8 TraesCS2D01G580900 chr2D 89.583 96 7 2 3621 3713 642508036 642508131 7.600000e-23 119.0
9 TraesCS2D01G580900 chr2D 92.500 80 1 2 3356 3435 642445899 642445973 4.580000e-20 110.0
10 TraesCS2D01G580900 chrUn 95.634 3436 99 13 917 4329 31517876 31521283 0.000000e+00 5467.0
11 TraesCS2D01G580900 chrUn 89.052 886 54 19 1 868 31516911 31517771 0.000000e+00 1059.0
12 TraesCS2D01G580900 chrUn 74.235 1079 222 33 2169 3205 183018687 183017623 6.740000e-108 401.0
13 TraesCS2D01G580900 chrUn 86.131 137 9 6 3375 3501 31526815 31526679 5.840000e-29 139.0
14 TraesCS2D01G580900 chrUn 76.562 256 50 9 2189 2443 22749100 22749346 9.770000e-27 132.0
15 TraesCS2D01G580900 chrUn 78.241 216 26 16 918 1113 31531283 31531069 7.600000e-23 119.0
16 TraesCS2D01G580900 chrUn 100.000 58 0 0 863 920 31517792 31517849 1.650000e-19 108.0
17 TraesCS2D01G580900 chrUn 84.906 106 16 0 3948 4053 183070351 183070246 1.650000e-19 108.0
18 TraesCS2D01G580900 chrUn 84.906 106 16 0 3948 4053 293040225 293040120 1.650000e-19 108.0
19 TraesCS2D01G580900 chr2A 95.510 2717 91 18 1621 4318 767782078 767784782 0.000000e+00 4313.0
20 TraesCS2D01G580900 chr2A 93.694 1332 62 11 2125 3442 767568318 767566995 0.000000e+00 1975.0
21 TraesCS2D01G580900 chr2A 85.057 1131 60 28 510 1611 767781063 767782113 0.000000e+00 1051.0
22 TraesCS2D01G580900 chr2A 91.549 568 44 3 3763 4329 767566383 767565819 0.000000e+00 780.0
23 TraesCS2D01G580900 chr2A 88.889 288 20 5 3356 3637 767572667 767572948 1.150000e-90 344.0
24 TraesCS2D01G580900 chr2A 88.696 115 11 1 3244 3356 767572613 767572727 5.840000e-29 139.0
25 TraesCS2D01G580900 chr2A 84.906 106 16 0 3948 4053 767574411 767574516 1.650000e-19 108.0
26 TraesCS2D01G580900 chr2A 98.276 58 1 0 1056 1113 767792287 767792230 7.660000e-18 102.0
27 TraesCS2D01G580900 chr2B 91.342 1825 102 20 2122 3913 799259846 799261647 0.000000e+00 2444.0
28 TraesCS2D01G580900 chr2B 91.330 1511 78 21 2122 3590 799254988 799256487 0.000000e+00 2015.0
29 TraesCS2D01G580900 chr2B 75.115 1085 214 32 2169 3210 799289732 799290803 1.420000e-124 457.0
30 TraesCS2D01G580900 chr2B 88.194 288 22 4 3356 3637 799250770 799250489 2.490000e-87 333.0
31 TraesCS2D01G580900 chr2B 90.400 250 18 4 3907 4151 799267360 799267608 1.500000e-84 324.0
32 TraesCS2D01G580900 chr2B 95.312 128 6 0 4202 4329 799267604 799267731 2.040000e-48 204.0
33 TraesCS2D01G580900 chr2B 87.209 86 11 0 3711 3796 59217935 59218020 9.910000e-17 99.0
34 TraesCS2D01G580900 chr5D 92.105 76 6 0 3712 3787 57393815 57393740 1.650000e-19 108.0
35 TraesCS2D01G580900 chr7D 87.342 79 9 1 3712 3790 495871879 495871956 5.960000e-14 89.8
36 TraesCS2D01G580900 chr7B 87.342 79 9 1 3712 3790 524244259 524244336 5.960000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G580900 chr2D 642869847 642874175 4328 False 7995.000000 7995 100.000000 1 4329 1 chr2D.!!$F2 4328
1 TraesCS2D01G580900 chr2D 642440000 642441365 1365 True 2021.000000 2021 93.474000 2180 3541 1 chr2D.!!$R3 1361
2 TraesCS2D01G580900 chr2D 642476845 642478063 1218 True 1818.000000 1818 93.801000 2180 3385 1 chr2D.!!$R4 1205
3 TraesCS2D01G580900 chr2D 642432895 642433685 790 True 1014.000000 1014 89.837000 3537 4329 1 chr2D.!!$R2 792
4 TraesCS2D01G580900 chrUn 31516911 31521283 4372 False 2211.333333 5467 94.895333 1 4329 3 chrUn.!!$F2 4328
5 TraesCS2D01G580900 chrUn 183017623 183018687 1064 True 401.000000 401 74.235000 2169 3205 1 chrUn.!!$R3 1036
6 TraesCS2D01G580900 chr2A 767781063 767784782 3719 False 2682.000000 4313 90.283500 510 4318 2 chr2A.!!$F2 3808
7 TraesCS2D01G580900 chr2A 767565819 767568318 2499 True 1377.500000 1975 92.621500 2125 4329 2 chr2A.!!$R2 2204
8 TraesCS2D01G580900 chr2B 799254988 799261647 6659 False 2229.500000 2444 91.336000 2122 3913 2 chr2B.!!$F3 1791
9 TraesCS2D01G580900 chr2B 799289732 799290803 1071 False 457.000000 457 75.115000 2169 3210 1 chr2B.!!$F2 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.248296 GCCTAGAAGACTCGTGAGCG 60.248 60.0 0.00 0.0 39.92 5.03 F
452 453 0.320421 CACGTCCATTTCTGTCCCGT 60.320 55.0 0.00 0.0 0.00 5.28 F
1347 1446 0.325296 TCCAGTATCCAGTCCGGCTT 60.325 55.0 0.00 0.0 33.14 4.35 F
1763 1862 0.906756 TCAGGCTGAACAGGAGGAGG 60.907 60.0 16.28 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1731 0.324285 CCTCTGTTTCTGCCTCTGCT 59.676 55.000 0.0 0.0 38.71 4.24 R
1755 1854 1.062505 CCTTCTTCCTAGCCTCCTCCT 60.063 57.143 0.0 0.0 0.00 3.69 R
3118 8154 2.073816 CAACCGTGATGTCCACCTTAC 58.926 52.381 0.0 0.0 42.76 2.34 R
3495 8587 1.484240 GCTCAGAGGCCTGACTTATGT 59.516 52.381 12.0 0.0 44.01 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 0.740737 GCGGGTCCCATCAAATTCAG 59.259 55.000 9.12 0.00 0.00 3.02
125 126 6.014156 AGCGATTTCTTCCTATAGTTATGGCT 60.014 38.462 0.00 0.00 0.00 4.75
128 129 8.037758 CGATTTCTTCCTATAGTTATGGCTGAT 58.962 37.037 0.00 0.00 0.00 2.90
158 159 1.381928 TAGGCTAACGTCTCTGGCCG 61.382 60.000 7.38 0.00 46.44 6.13
165 166 3.785859 GTCTCTGGCCGGGATGCA 61.786 66.667 12.87 0.00 0.00 3.96
175 176 1.267806 GCCGGGATGCAATTATGTGAG 59.732 52.381 2.18 0.00 0.00 3.51
233 234 2.093973 CACCCACACCACTCTACTCATC 60.094 54.545 0.00 0.00 0.00 2.92
287 288 7.931407 GGAACCAAAGAAAGAAATAACAACCAT 59.069 33.333 0.00 0.00 0.00 3.55
293 294 9.914131 AAAGAAAGAAATAACAACCATAAGCTC 57.086 29.630 0.00 0.00 0.00 4.09
318 319 1.068588 GGCAAAAACCGAAAAGAGCCT 59.931 47.619 0.00 0.00 37.89 4.58
322 323 4.558697 GCAAAAACCGAAAAGAGCCTATGT 60.559 41.667 0.00 0.00 0.00 2.29
324 325 6.674066 CAAAAACCGAAAAGAGCCTATGTAA 58.326 36.000 0.00 0.00 0.00 2.41
348 349 2.129555 ATCCGGTGCTGTTCTTGGCT 62.130 55.000 0.00 0.00 0.00 4.75
380 381 1.867363 TTGGGAGGCCTAGAAGACTC 58.133 55.000 4.42 0.00 0.00 3.36
387 388 0.248296 GCCTAGAAGACTCGTGAGCG 60.248 60.000 0.00 0.00 39.92 5.03
391 392 2.615489 AGAAGACTCGTGAGCGTTAC 57.385 50.000 0.00 0.00 39.49 2.50
428 429 1.445582 GCGTTACTGGGTCTGGTCG 60.446 63.158 0.00 0.00 0.00 4.79
431 432 1.229082 TTACTGGGTCTGGTCGCCT 60.229 57.895 0.00 0.00 0.00 5.52
436 437 2.432628 GGTCTGGTCGCCTTCACG 60.433 66.667 0.00 0.00 0.00 4.35
452 453 0.320421 CACGTCCATTTCTGTCCCGT 60.320 55.000 0.00 0.00 0.00 5.28
457 458 1.019278 CCATTTCTGTCCCGTCGTGG 61.019 60.000 0.00 0.00 37.55 4.94
460 461 2.091102 TTTCTGTCCCGTCGTGGTCC 62.091 60.000 0.00 0.00 35.15 4.46
485 486 1.613925 GGGAGCTGAGTTGGGTTTTTC 59.386 52.381 0.00 0.00 0.00 2.29
497 498 6.427441 AGTTGGGTTTTTCTCTCTCTTCTTT 58.573 36.000 0.00 0.00 0.00 2.52
1347 1446 0.325296 TCCAGTATCCAGTCCGGCTT 60.325 55.000 0.00 0.00 33.14 4.35
1394 1493 5.428496 TGTTAGAGACGTCGAGAAAGAAA 57.572 39.130 10.46 0.00 0.00 2.52
1595 1694 3.562182 GAGAAGAGTAAGGAGGAGGAGG 58.438 54.545 0.00 0.00 0.00 4.30
1613 1712 2.365370 AGAGGCAGAGGCAGAGGG 60.365 66.667 0.00 0.00 43.71 4.30
1614 1713 2.686835 GAGGCAGAGGCAGAGGGT 60.687 66.667 0.00 0.00 43.71 4.34
1632 1731 2.487265 GGGTGAAGCACAAGGAGAAGAA 60.487 50.000 0.00 0.00 35.86 2.52
1755 1854 2.909006 AGAAGGAGAATCAGGCTGAACA 59.091 45.455 22.84 0.00 36.25 3.18
1763 1862 0.906756 TCAGGCTGAACAGGAGGAGG 60.907 60.000 16.28 0.00 0.00 4.30
1764 1863 2.270527 GGCTGAACAGGAGGAGGC 59.729 66.667 3.99 0.00 0.00 4.70
1781 1880 1.490574 GGCTAGGAAGAAGGCTGAGA 58.509 55.000 0.00 0.00 36.63 3.27
1787 1886 3.113824 AGGAAGAAGGCTGAGATGATGT 58.886 45.455 0.00 0.00 0.00 3.06
1795 1894 1.745141 GCTGAGATGATGTGGTCCCAC 60.745 57.143 9.57 9.57 46.33 4.61
1876 1975 3.134623 TGGCGATGATGTTTACAGAGGAT 59.865 43.478 0.00 0.00 0.00 3.24
1941 2040 2.114616 GGAGATGGAGAGGAAGCAGAA 58.885 52.381 0.00 0.00 0.00 3.02
1946 2045 2.894731 TGGAGAGGAAGCAGAAGAAGA 58.105 47.619 0.00 0.00 0.00 2.87
1964 2081 2.854963 AGAAGCAGCAGATTGTTGTGA 58.145 42.857 0.00 0.00 30.85 3.58
1986 2103 2.045926 GGGCGCTGACCAGAACAT 60.046 61.111 7.64 0.00 0.00 2.71
2029 2146 6.786959 AGCTTCTCAAAGAGGATATGGATACT 59.213 38.462 0.00 0.00 34.14 2.12
2041 2158 1.186200 TGGATACTGAGCTGCGACTT 58.814 50.000 0.00 0.00 37.61 3.01
2089 2206 5.645497 GGAAGATACAAACATCAGCAAGACT 59.355 40.000 0.00 0.00 0.00 3.24
2963 7987 5.779241 TTCCTGAAGATGGTTTAGATGGT 57.221 39.130 0.00 0.00 0.00 3.55
3118 8154 4.156008 GGGTAGTTGTTTTGTCTATGGCAG 59.844 45.833 0.00 0.00 0.00 4.85
3148 8184 2.063015 ATCACGGTTGCTTGGTCCCA 62.063 55.000 0.00 0.00 0.00 4.37
3278 8319 1.202568 CCAGCTATGCAAGACGGATGA 60.203 52.381 0.00 0.00 0.00 2.92
3279 8320 2.549563 CCAGCTATGCAAGACGGATGAT 60.550 50.000 0.00 0.00 0.00 2.45
3280 8321 2.479275 CAGCTATGCAAGACGGATGATG 59.521 50.000 0.00 0.00 0.00 3.07
3281 8322 2.103771 AGCTATGCAAGACGGATGATGT 59.896 45.455 0.00 0.00 0.00 3.06
3282 8323 2.478134 GCTATGCAAGACGGATGATGTC 59.522 50.000 0.00 0.00 36.60 3.06
3495 8587 4.474394 TGATGGGTTGTTTGTGGACATTA 58.526 39.130 0.00 0.00 0.00 1.90
3724 8818 6.186957 CAGCTCATAGATACTCCCTCTGTAT 58.813 44.000 0.00 0.00 33.79 2.29
3892 9345 5.817816 AGGGATCTGATAACAGCTTTTTACG 59.182 40.000 0.00 0.00 43.17 3.18
3930 9383 1.104577 TGCCTTGGTCGGAAACAACC 61.105 55.000 0.00 0.00 0.00 3.77
3937 9390 3.757270 TGGTCGGAAACAACCATACATT 58.243 40.909 0.00 0.00 0.00 2.71
3943 9396 4.695455 CGGAAACAACCATACATTCTGAGT 59.305 41.667 0.00 0.00 0.00 3.41
4039 9493 2.291365 TGGATCTGATTGTTCCATGCG 58.709 47.619 0.00 0.00 39.05 4.73
4040 9494 1.605710 GGATCTGATTGTTCCATGCGG 59.394 52.381 0.00 0.00 35.22 5.69
4054 9508 4.038080 GCGGTGGGTGCTTTTCGG 62.038 66.667 0.00 0.00 0.00 4.30
4185 9639 5.297547 ACTGAAGTCGCTTGAATCTGTTTA 58.702 37.500 0.00 0.00 0.00 2.01
4238 9694 7.735326 TTAGAGTTCCTGCCTTACTTCTTAT 57.265 36.000 0.00 0.00 0.00 1.73
4239 9695 8.834004 TTAGAGTTCCTGCCTTACTTCTTATA 57.166 34.615 0.00 0.00 0.00 0.98
4269 9725 0.694771 ACAAGGAGCAGATGAAGCCA 59.305 50.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.682423 TGCATCATGTTATCCAACTGTTAG 57.318 37.500 0.00 0.00 35.56 2.34
69 70 0.597637 GACCCGCTGATACGTCCATG 60.598 60.000 0.00 0.00 0.00 3.66
101 102 6.091441 CAGCCATAACTATAGGAAGAAATCGC 59.909 42.308 4.43 0.00 0.00 4.58
125 126 5.651139 ACGTTAGCCTAGAACTCAAGTATCA 59.349 40.000 0.00 0.00 0.00 2.15
128 129 5.251764 AGACGTTAGCCTAGAACTCAAGTA 58.748 41.667 0.00 0.00 0.00 2.24
158 159 1.615392 GGCCTCACATAATTGCATCCC 59.385 52.381 0.00 0.00 0.00 3.85
175 176 0.600255 CCGATTAGATGGTGACGGCC 60.600 60.000 0.00 0.00 34.36 6.13
219 220 1.384989 CCCGCGATGAGTAGAGTGGT 61.385 60.000 8.23 0.00 32.75 4.16
233 234 4.929707 GGTTGGATAGGCCCCGCG 62.930 72.222 0.00 0.00 34.97 6.46
276 277 3.945285 CGGGTGAGCTTATGGTTGTTATT 59.055 43.478 0.00 0.00 0.00 1.40
282 283 1.077716 GCCGGGTGAGCTTATGGTT 60.078 57.895 2.18 0.00 0.00 3.67
287 288 0.955905 GTTTTTGCCGGGTGAGCTTA 59.044 50.000 2.18 0.00 0.00 3.09
318 319 2.034179 CAGCACCGGATCGAGTTACATA 59.966 50.000 9.46 0.00 0.00 2.29
322 323 0.892755 AACAGCACCGGATCGAGTTA 59.107 50.000 9.46 0.00 0.00 2.24
324 325 1.215647 GAACAGCACCGGATCGAGT 59.784 57.895 9.46 0.70 0.00 4.18
348 349 3.573695 GCCTCCCAATAGGTAGTAGACA 58.426 50.000 0.00 0.00 39.02 3.41
368 369 0.248296 CGCTCACGAGTCTTCTAGGC 60.248 60.000 0.00 0.00 43.93 3.93
428 429 1.464997 GACAGAAATGGACGTGAAGGC 59.535 52.381 0.00 0.00 0.00 4.35
431 432 1.606994 CGGGACAGAAATGGACGTGAA 60.607 52.381 0.00 0.00 0.00 3.18
436 437 0.037605 ACGACGGGACAGAAATGGAC 60.038 55.000 0.00 0.00 0.00 4.02
457 458 1.536943 AACTCAGCTCCCACTCGGAC 61.537 60.000 0.00 0.00 34.86 4.79
460 461 1.079543 CCAACTCAGCTCCCACTCG 60.080 63.158 0.00 0.00 0.00 4.18
470 471 4.967036 AGAGAGAGAAAAACCCAACTCAG 58.033 43.478 0.00 0.00 32.59 3.35
511 524 6.381498 AAAAGGAAAGGGGAAAGAACAAAA 57.619 33.333 0.00 0.00 0.00 2.44
829 849 7.775397 AAACAAGTTTGGAATCTCAACAATG 57.225 32.000 0.00 0.00 0.00 2.82
860 880 5.028802 AGTTTGGAATCTCATCTCTCTCCA 58.971 41.667 0.00 0.00 0.00 3.86
861 881 5.612725 AGTTTGGAATCTCATCTCTCTCC 57.387 43.478 0.00 0.00 0.00 3.71
1069 1147 1.626747 CGCTATCCATCTGCATCTCG 58.373 55.000 0.00 0.00 0.00 4.04
1272 1368 1.973281 CTGCTCACGGCCATGGTTT 60.973 57.895 14.67 0.00 40.92 3.27
1394 1493 4.918588 ACAAAATCGAAGTAGTTCCCCAT 58.081 39.130 4.70 0.00 0.00 4.00
1595 1694 2.433994 CCCTCTGCCTCTGCCTCTC 61.434 68.421 0.00 0.00 36.33 3.20
1613 1712 2.225255 GCTTCTTCTCCTTGTGCTTCAC 59.775 50.000 0.00 0.00 34.56 3.18
1614 1713 2.158769 TGCTTCTTCTCCTTGTGCTTCA 60.159 45.455 0.00 0.00 0.00 3.02
1632 1731 0.324285 CCTCTGTTTCTGCCTCTGCT 59.676 55.000 0.00 0.00 38.71 4.24
1755 1854 1.062505 CCTTCTTCCTAGCCTCCTCCT 60.063 57.143 0.00 0.00 0.00 3.69
1763 1862 2.697751 TCATCTCAGCCTTCTTCCTAGC 59.302 50.000 0.00 0.00 0.00 3.42
1764 1863 4.344679 ACATCATCTCAGCCTTCTTCCTAG 59.655 45.833 0.00 0.00 0.00 3.02
1781 1880 2.239654 AGAATTCGTGGGACCACATCAT 59.760 45.455 20.44 6.74 46.47 2.45
1876 1975 3.546724 CCTCTCATACTCCTTCTCGTCA 58.453 50.000 0.00 0.00 0.00 4.35
1941 2040 3.252701 CACAACAATCTGCTGCTTCTTCT 59.747 43.478 0.00 0.00 0.00 2.85
1946 2045 2.288030 GCTTCACAACAATCTGCTGCTT 60.288 45.455 0.00 0.00 0.00 3.91
2029 2146 1.100463 TGGCAAAAAGTCGCAGCTCA 61.100 50.000 0.00 0.00 0.00 4.26
2041 2158 2.124109 TCACGGTGGCTGGCAAAA 60.124 55.556 5.14 0.00 0.00 2.44
2089 2206 3.509137 GAACCGACCGCACTGTCCA 62.509 63.158 0.00 0.00 31.35 4.02
2963 7987 7.606456 ACAACGCTCCTTGAAAGAGAAATATAA 59.394 33.333 0.00 0.00 32.86 0.98
3118 8154 2.073816 CAACCGTGATGTCCACCTTAC 58.926 52.381 0.00 0.00 42.76 2.34
3278 8319 5.324409 ACACAAATAGTTGGGACATGACAT 58.676 37.500 12.90 0.00 40.98 3.06
3279 8320 4.724399 ACACAAATAGTTGGGACATGACA 58.276 39.130 12.90 0.00 40.98 3.58
3280 8321 7.120579 TCAATACACAAATAGTTGGGACATGAC 59.879 37.037 12.90 0.00 40.98 3.06
3281 8322 7.120579 GTCAATACACAAATAGTTGGGACATGA 59.879 37.037 12.90 9.38 40.98 3.07
3282 8323 7.121168 AGTCAATACACAAATAGTTGGGACATG 59.879 37.037 12.90 7.25 40.98 3.21
3495 8587 1.484240 GCTCAGAGGCCTGACTTATGT 59.516 52.381 12.00 0.00 44.01 2.29
3892 9345 2.937433 GCAGTCTTCTTCTACTTGCCCC 60.937 54.545 0.00 0.00 0.00 5.80
3937 9390 3.629855 GCTAGCTCATACACAGACTCAGA 59.370 47.826 7.70 0.00 0.00 3.27
3943 9396 6.471233 ACAATAAGCTAGCTCATACACAGA 57.529 37.500 19.65 0.00 0.00 3.41
4000 9454 4.143543 TCCAATCTGCATCAGTTTGTTCA 58.856 39.130 13.39 0.08 38.66 3.18
4039 9493 3.680786 GCCCGAAAAGCACCCACC 61.681 66.667 0.00 0.00 0.00 4.61
4040 9494 2.597510 AGCCCGAAAAGCACCCAC 60.598 61.111 0.00 0.00 0.00 4.61
4185 9639 3.392228 TGGAACTCCAGCGAGCAT 58.608 55.556 0.00 0.00 42.01 3.79
4238 9694 4.528206 TCTGCTCCTTGTGTTTCAGATCTA 59.472 41.667 0.00 0.00 0.00 1.98
4239 9695 3.326006 TCTGCTCCTTGTGTTTCAGATCT 59.674 43.478 0.00 0.00 0.00 2.75
4255 9711 1.206610 TGAGAGTGGCTTCATCTGCTC 59.793 52.381 0.00 0.00 0.00 4.26
4269 9725 3.952931 AGAATCAAGCTGCATTGAGAGT 58.047 40.909 15.85 7.46 42.20 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.