Multiple sequence alignment - TraesCS2D01G580300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G580300 chr2D 100.000 5069 0 0 1 5069 642255582 642250514 0.000000e+00 9361.0
1 TraesCS2D01G580300 chr2D 94.766 3611 89 38 734 4285 598376786 598373217 0.000000e+00 5529.0
2 TraesCS2D01G580300 chr2D 91.295 471 29 6 4472 4936 598341771 598341307 2.580000e-177 632.0
3 TraesCS2D01G580300 chr2D 89.079 467 43 6 4472 4933 106091890 106092353 1.580000e-159 573.0
4 TraesCS2D01G580300 chr2D 92.883 281 10 3 4191 4470 598372092 598371821 2.840000e-107 399.0
5 TraesCS2D01G580300 chr2D 84.365 307 41 5 3024 3327 641881170 641880868 1.380000e-75 294.0
6 TraesCS2D01G580300 chr2D 84.589 292 40 4 3024 3314 597825653 597825366 8.310000e-73 285.0
7 TraesCS2D01G580300 chr2D 89.947 189 14 2 4283 4470 598373116 598372932 6.560000e-59 239.0
8 TraesCS2D01G580300 chr2D 96.350 137 5 0 4933 5069 598341237 598341101 5.110000e-55 226.0
9 TraesCS2D01G580300 chr2A 94.213 1659 55 22 2660 4285 767131113 767132763 0.000000e+00 2494.0
10 TraesCS2D01G580300 chr2A 88.055 1465 112 33 976 2384 767129255 767130712 0.000000e+00 1677.0
11 TraesCS2D01G580300 chr2A 86.614 381 23 13 529 897 767128726 767129090 3.680000e-106 396.0
12 TraesCS2D01G580300 chr2A 95.935 246 7 1 2414 2659 767130713 767130955 3.680000e-106 396.0
13 TraesCS2D01G580300 chr2A 85.016 307 39 6 3024 3327 766848118 766847816 6.380000e-79 305.0
14 TraesCS2D01G580300 chr2A 87.069 116 11 3 4283 4398 767132862 767132973 1.480000e-25 128.0
15 TraesCS2D01G580300 chr2B 95.808 1503 51 7 2660 4161 799360452 799358961 0.000000e+00 2416.0
16 TraesCS2D01G580300 chr2B 87.944 1916 137 44 810 2659 799362498 799360611 0.000000e+00 2172.0
17 TraesCS2D01G580300 chr2B 79.596 1039 176 25 3045 4070 799289783 799290798 0.000000e+00 712.0
18 TraesCS2D01G580300 chr2B 88.278 273 18 8 521 789 799362753 799362491 1.060000e-81 315.0
19 TraesCS2D01G580300 chr2B 82.540 189 15 6 4283 4470 799358550 799358379 3.160000e-32 150.0
20 TraesCS2D01G580300 chr2B 91.429 105 6 1 4167 4268 799358924 799358820 1.900000e-29 141.0
21 TraesCS2D01G580300 chr2B 81.739 115 19 2 3922 4035 799291911 799292024 1.500000e-15 95.3
22 TraesCS2D01G580300 chrUn 79.403 1039 176 27 3045 4070 183018636 183017623 0.000000e+00 699.0
23 TraesCS2D01G580300 chrUn 79.365 126 26 0 3910 4035 327341164 327341289 6.990000e-14 89.8
24 TraesCS2D01G580300 chrUn 79.825 114 23 0 3922 4035 183016329 183016216 3.250000e-12 84.2
25 TraesCS2D01G580300 chr3D 89.597 471 41 7 4472 4936 422486140 422485672 4.370000e-165 592.0
26 TraesCS2D01G580300 chr3D 88.189 127 11 4 4945 5069 66571001 66571125 1.140000e-31 148.0
27 TraesCS2D01G580300 chr5B 89.172 471 44 6 4472 4936 75154937 75155406 9.460000e-162 580.0
28 TraesCS2D01G580300 chr3A 88.723 470 47 5 4472 4936 125284857 125284389 2.050000e-158 569.0
29 TraesCS2D01G580300 chr3A 88.723 470 45 6 4472 4936 125239662 125239196 7.370000e-158 568.0
30 TraesCS2D01G580300 chr3A 88.095 126 13 2 4945 5069 116945238 116945362 1.140000e-31 148.0
31 TraesCS2D01G580300 chr5D 88.535 471 46 5 4472 4936 11375316 11374848 9.530000e-157 564.0
32 TraesCS2D01G580300 chr4D 88.511 470 48 5 4472 4936 329651776 329651308 9.530000e-157 564.0
33 TraesCS2D01G580300 chr4D 87.302 126 14 2 4945 5069 180362049 180361925 5.290000e-30 143.0
34 TraesCS2D01G580300 chr4B 88.769 463 48 4 4472 4933 195547895 195548354 9.530000e-157 564.0
35 TraesCS2D01G580300 chr4B 88.189 127 11 4 4945 5069 74042597 74042721 1.140000e-31 148.0
36 TraesCS2D01G580300 chr4B 87.302 126 14 2 4945 5069 84954650 84954774 5.290000e-30 143.0
37 TraesCS2D01G580300 chr4B 84.314 153 17 7 4923 5069 652247740 652247589 5.290000e-30 143.0
38 TraesCS2D01G580300 chr7B 87.302 126 14 2 4945 5069 264480166 264480042 5.290000e-30 143.0
39 TraesCS2D01G580300 chr1B 87.302 126 14 2 4945 5069 303375476 303375600 5.290000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G580300 chr2D 642250514 642255582 5068 True 9361.000000 9361 100.0000 1 5069 1 chr2D.!!$R3 5068
1 TraesCS2D01G580300 chr2D 598371821 598376786 4965 True 2055.666667 5529 92.5320 734 4470 3 chr2D.!!$R5 3736
2 TraesCS2D01G580300 chr2D 598341101 598341771 670 True 429.000000 632 93.8225 4472 5069 2 chr2D.!!$R4 597
3 TraesCS2D01G580300 chr2A 767128726 767132973 4247 False 1018.200000 2494 90.3772 529 4398 5 chr2A.!!$F1 3869
4 TraesCS2D01G580300 chr2B 799358379 799362753 4374 True 1038.800000 2416 89.1998 521 4470 5 chr2B.!!$R1 3949
5 TraesCS2D01G580300 chr2B 799289783 799292024 2241 False 403.650000 712 80.6675 3045 4070 2 chr2B.!!$F1 1025
6 TraesCS2D01G580300 chrUn 183016216 183018636 2420 True 391.600000 699 79.6140 3045 4070 2 chrUn.!!$R1 1025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 477 0.031585 CCTCTCGTTCACGGTGTTGA 59.968 55.0 8.17 4.08 40.29 3.18 F
1668 1833 0.033894 AGGAGGAAGAGGACGAGGAC 60.034 60.0 0.00 0.00 0.00 3.85 F
2911 3298 0.446222 CGTTGGAATACCGTGGCTTG 59.554 55.0 0.00 0.00 39.42 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2568 0.320073 GCATGCATGTGCCAACAACT 60.320 50.0 26.79 0.0 40.46 3.16 R
3078 3467 0.326595 TGACACCGGGTATGCAATGT 59.673 50.0 6.32 0.0 0.00 2.71 R
4804 6978 0.104672 TCCCTCCAAGGAAGTGGACA 60.105 55.0 0.00 0.0 42.97 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.576447 CCAAGGCCGAAGTTGTATTATTT 57.424 39.130 0.00 0.00 0.00 1.40
23 24 5.961272 CCAAGGCCGAAGTTGTATTATTTT 58.039 37.500 0.00 0.00 0.00 1.82
24 25 6.394809 CCAAGGCCGAAGTTGTATTATTTTT 58.605 36.000 0.00 0.00 0.00 1.94
25 26 7.540299 CCAAGGCCGAAGTTGTATTATTTTTA 58.460 34.615 0.00 0.00 0.00 1.52
26 27 8.030106 CCAAGGCCGAAGTTGTATTATTTTTAA 58.970 33.333 0.00 0.00 0.00 1.52
27 28 9.413048 CAAGGCCGAAGTTGTATTATTTTTAAA 57.587 29.630 0.00 0.00 0.00 1.52
28 29 9.984190 AAGGCCGAAGTTGTATTATTTTTAAAA 57.016 25.926 0.00 0.00 0.00 1.52
29 30 9.984190 AGGCCGAAGTTGTATTATTTTTAAAAA 57.016 25.926 15.38 15.38 0.00 1.94
53 54 9.628746 AAATAAAATAAACGGCGTAATGTTTCT 57.371 25.926 15.20 9.55 39.00 2.52
109 110 8.409358 AAAAATAGCATAACAACTCCACTCTT 57.591 30.769 0.00 0.00 0.00 2.85
110 111 9.515226 AAAAATAGCATAACAACTCCACTCTTA 57.485 29.630 0.00 0.00 0.00 2.10
111 112 9.686683 AAAATAGCATAACAACTCCACTCTTAT 57.313 29.630 0.00 0.00 0.00 1.73
112 113 9.686683 AAATAGCATAACAACTCCACTCTTATT 57.313 29.630 0.00 0.00 0.00 1.40
113 114 8.894768 ATAGCATAACAACTCCACTCTTATTC 57.105 34.615 0.00 0.00 0.00 1.75
114 115 6.711277 AGCATAACAACTCCACTCTTATTCA 58.289 36.000 0.00 0.00 0.00 2.57
115 116 7.341805 AGCATAACAACTCCACTCTTATTCAT 58.658 34.615 0.00 0.00 0.00 2.57
116 117 7.831193 AGCATAACAACTCCACTCTTATTCATT 59.169 33.333 0.00 0.00 0.00 2.57
117 118 8.125448 GCATAACAACTCCACTCTTATTCATTC 58.875 37.037 0.00 0.00 0.00 2.67
118 119 9.388506 CATAACAACTCCACTCTTATTCATTCT 57.611 33.333 0.00 0.00 0.00 2.40
119 120 9.965902 ATAACAACTCCACTCTTATTCATTCTT 57.034 29.630 0.00 0.00 0.00 2.52
120 121 8.697507 AACAACTCCACTCTTATTCATTCTTT 57.302 30.769 0.00 0.00 0.00 2.52
121 122 8.329203 ACAACTCCACTCTTATTCATTCTTTC 57.671 34.615 0.00 0.00 0.00 2.62
122 123 8.160106 ACAACTCCACTCTTATTCATTCTTTCT 58.840 33.333 0.00 0.00 0.00 2.52
123 124 9.007901 CAACTCCACTCTTATTCATTCTTTCTT 57.992 33.333 0.00 0.00 0.00 2.52
125 126 9.883142 ACTCCACTCTTATTCATTCTTTCTTAG 57.117 33.333 0.00 0.00 0.00 2.18
153 154 8.776376 ACTCATTGTTTTGATTTTGTTTCAGT 57.224 26.923 0.00 0.00 0.00 3.41
154 155 9.218440 ACTCATTGTTTTGATTTTGTTTCAGTT 57.782 25.926 0.00 0.00 0.00 3.16
185 186 8.419076 TCATTTTGTTTGTTCTTTAAGGAAGC 57.581 30.769 0.00 0.00 35.24 3.86
186 187 8.257306 TCATTTTGTTTGTTCTTTAAGGAAGCT 58.743 29.630 0.00 0.00 35.24 3.74
187 188 8.882736 CATTTTGTTTGTTCTTTAAGGAAGCTT 58.117 29.630 0.00 0.00 35.24 3.74
188 189 8.840833 TTTTGTTTGTTCTTTAAGGAAGCTTT 57.159 26.923 0.00 0.00 35.24 3.51
189 190 8.840833 TTTGTTTGTTCTTTAAGGAAGCTTTT 57.159 26.923 0.00 0.00 35.24 2.27
190 191 9.930693 TTTGTTTGTTCTTTAAGGAAGCTTTTA 57.069 25.926 0.00 0.00 35.24 1.52
197 198 9.841880 GTTCTTTAAGGAAGCTTTTATACTTGG 57.158 33.333 0.00 0.00 35.24 3.61
198 199 9.582648 TTCTTTAAGGAAGCTTTTATACTTGGT 57.417 29.630 0.00 0.00 35.24 3.67
199 200 9.010029 TCTTTAAGGAAGCTTTTATACTTGGTG 57.990 33.333 0.00 0.00 35.24 4.17
200 201 8.927675 TTTAAGGAAGCTTTTATACTTGGTGA 57.072 30.769 0.00 0.00 0.00 4.02
201 202 8.927675 TTAAGGAAGCTTTTATACTTGGTGAA 57.072 30.769 0.00 0.00 0.00 3.18
202 203 7.833285 AAGGAAGCTTTTATACTTGGTGAAA 57.167 32.000 0.00 0.00 0.00 2.69
203 204 7.215719 AGGAAGCTTTTATACTTGGTGAAAC 57.784 36.000 0.00 0.00 0.00 2.78
204 205 7.004691 AGGAAGCTTTTATACTTGGTGAAACT 58.995 34.615 0.00 0.00 36.74 2.66
205 206 7.505923 AGGAAGCTTTTATACTTGGTGAAACTT 59.494 33.333 0.00 0.00 36.74 2.66
206 207 8.141909 GGAAGCTTTTATACTTGGTGAAACTTT 58.858 33.333 0.00 0.00 36.74 2.66
207 208 8.871686 AAGCTTTTATACTTGGTGAAACTTTG 57.128 30.769 0.00 0.00 36.74 2.77
208 209 7.433680 AGCTTTTATACTTGGTGAAACTTTGG 58.566 34.615 0.00 0.00 36.74 3.28
209 210 7.286775 AGCTTTTATACTTGGTGAAACTTTGGA 59.713 33.333 0.00 0.00 36.74 3.53
210 211 7.923878 GCTTTTATACTTGGTGAAACTTTGGAA 59.076 33.333 0.00 0.00 36.74 3.53
211 212 9.463443 CTTTTATACTTGGTGAAACTTTGGAAG 57.537 33.333 0.00 0.00 36.74 3.46
212 213 8.754991 TTTATACTTGGTGAAACTTTGGAAGA 57.245 30.769 0.00 0.00 36.74 2.87
213 214 8.754991 TTATACTTGGTGAAACTTTGGAAGAA 57.245 30.769 0.00 0.00 36.74 2.52
214 215 5.993748 ACTTGGTGAAACTTTGGAAGAAA 57.006 34.783 0.00 0.00 36.74 2.52
215 216 5.965922 ACTTGGTGAAACTTTGGAAGAAAG 58.034 37.500 0.00 0.00 36.74 2.62
216 217 5.105351 ACTTGGTGAAACTTTGGAAGAAAGG 60.105 40.000 0.00 0.00 36.74 3.11
217 218 3.704061 TGGTGAAACTTTGGAAGAAAGGG 59.296 43.478 0.00 0.00 36.74 3.95
218 219 3.958147 GGTGAAACTTTGGAAGAAAGGGA 59.042 43.478 0.00 0.00 36.74 4.20
219 220 4.038042 GGTGAAACTTTGGAAGAAAGGGAG 59.962 45.833 0.00 0.00 36.74 4.30
220 221 4.038042 GTGAAACTTTGGAAGAAAGGGAGG 59.962 45.833 0.00 0.00 0.00 4.30
221 222 2.980246 ACTTTGGAAGAAAGGGAGGG 57.020 50.000 0.00 0.00 0.00 4.30
222 223 2.428901 ACTTTGGAAGAAAGGGAGGGA 58.571 47.619 0.00 0.00 0.00 4.20
223 224 2.108425 ACTTTGGAAGAAAGGGAGGGAC 59.892 50.000 0.00 0.00 0.00 4.46
224 225 1.827792 TTGGAAGAAAGGGAGGGACA 58.172 50.000 0.00 0.00 0.00 4.02
225 226 1.827792 TGGAAGAAAGGGAGGGACAA 58.172 50.000 0.00 0.00 0.00 3.18
226 227 1.423921 TGGAAGAAAGGGAGGGACAAC 59.576 52.381 0.00 0.00 0.00 3.32
227 228 1.271982 GGAAGAAAGGGAGGGACAACC 60.272 57.143 0.00 0.00 40.67 3.77
238 239 3.959433 GGACAACCCCTTTCCTCTC 57.041 57.895 0.00 0.00 0.00 3.20
239 240 0.036294 GGACAACCCCTTTCCTCTCG 60.036 60.000 0.00 0.00 0.00 4.04
240 241 0.685660 GACAACCCCTTTCCTCTCGT 59.314 55.000 0.00 0.00 0.00 4.18
241 242 1.071857 GACAACCCCTTTCCTCTCGTT 59.928 52.381 0.00 0.00 0.00 3.85
242 243 1.493446 ACAACCCCTTTCCTCTCGTTT 59.507 47.619 0.00 0.00 0.00 3.60
243 244 2.152016 CAACCCCTTTCCTCTCGTTTC 58.848 52.381 0.00 0.00 0.00 2.78
244 245 0.691332 ACCCCTTTCCTCTCGTTTCC 59.309 55.000 0.00 0.00 0.00 3.13
245 246 0.984995 CCCCTTTCCTCTCGTTTCCT 59.015 55.000 0.00 0.00 0.00 3.36
246 247 1.066071 CCCCTTTCCTCTCGTTTCCTC 60.066 57.143 0.00 0.00 0.00 3.71
247 248 1.903183 CCCTTTCCTCTCGTTTCCTCT 59.097 52.381 0.00 0.00 0.00 3.69
248 249 3.097614 CCCTTTCCTCTCGTTTCCTCTA 58.902 50.000 0.00 0.00 0.00 2.43
249 250 3.131400 CCCTTTCCTCTCGTTTCCTCTAG 59.869 52.174 0.00 0.00 0.00 2.43
250 251 4.017808 CCTTTCCTCTCGTTTCCTCTAGA 58.982 47.826 0.00 0.00 0.00 2.43
251 252 4.463186 CCTTTCCTCTCGTTTCCTCTAGAA 59.537 45.833 0.00 0.00 0.00 2.10
252 253 5.047235 CCTTTCCTCTCGTTTCCTCTAGAAA 60.047 44.000 0.00 0.00 42.28 2.52
263 264 3.914312 TCCTCTAGAAACAGACTTTGCG 58.086 45.455 0.00 0.00 0.00 4.85
264 265 3.321111 TCCTCTAGAAACAGACTTTGCGT 59.679 43.478 0.00 0.00 0.00 5.24
265 266 3.430218 CCTCTAGAAACAGACTTTGCGTG 59.570 47.826 0.00 0.00 0.00 5.34
266 267 4.299155 CTCTAGAAACAGACTTTGCGTGA 58.701 43.478 0.00 0.00 0.00 4.35
267 268 4.299155 TCTAGAAACAGACTTTGCGTGAG 58.701 43.478 0.00 0.00 0.00 3.51
268 269 2.213499 AGAAACAGACTTTGCGTGAGG 58.787 47.619 0.00 0.00 0.00 3.86
269 270 1.940613 GAAACAGACTTTGCGTGAGGT 59.059 47.619 0.00 0.00 0.00 3.85
270 271 1.583054 AACAGACTTTGCGTGAGGTC 58.417 50.000 0.00 0.00 0.00 3.85
271 272 0.464036 ACAGACTTTGCGTGAGGTCA 59.536 50.000 5.52 0.00 0.00 4.02
272 273 1.134521 ACAGACTTTGCGTGAGGTCAA 60.135 47.619 5.52 0.00 0.00 3.18
273 274 1.261619 CAGACTTTGCGTGAGGTCAAC 59.738 52.381 5.52 0.00 0.00 3.18
274 275 0.586802 GACTTTGCGTGAGGTCAACC 59.413 55.000 0.00 0.00 0.00 3.77
275 276 0.818040 ACTTTGCGTGAGGTCAACCC 60.818 55.000 0.00 0.00 36.42 4.11
276 277 1.515521 CTTTGCGTGAGGTCAACCCC 61.516 60.000 0.00 0.00 36.42 4.95
277 278 1.990160 TTTGCGTGAGGTCAACCCCT 61.990 55.000 0.00 0.00 37.62 4.79
278 279 2.358737 GCGTGAGGTCAACCCCTG 60.359 66.667 0.00 0.00 34.03 4.45
279 280 3.148084 CGTGAGGTCAACCCCTGT 58.852 61.111 0.00 0.00 34.03 4.00
280 281 1.301716 CGTGAGGTCAACCCCTGTG 60.302 63.158 0.00 0.00 34.03 3.66
281 282 1.837090 GTGAGGTCAACCCCTGTGT 59.163 57.895 0.00 0.00 34.03 3.72
282 283 0.250338 GTGAGGTCAACCCCTGTGTC 60.250 60.000 0.00 0.00 34.03 3.67
283 284 1.004918 GAGGTCAACCCCTGTGTCG 60.005 63.158 0.00 0.00 34.03 4.35
284 285 1.755393 GAGGTCAACCCCTGTGTCGT 61.755 60.000 0.00 0.00 34.03 4.34
285 286 1.597027 GGTCAACCCCTGTGTCGTG 60.597 63.158 0.00 0.00 0.00 4.35
286 287 1.597027 GTCAACCCCTGTGTCGTGG 60.597 63.158 0.00 0.00 0.00 4.94
287 288 1.762858 TCAACCCCTGTGTCGTGGA 60.763 57.895 0.00 0.00 0.00 4.02
288 289 1.125093 TCAACCCCTGTGTCGTGGAT 61.125 55.000 0.00 0.00 0.00 3.41
289 290 0.250727 CAACCCCTGTGTCGTGGATT 60.251 55.000 0.00 0.00 0.00 3.01
290 291 0.476771 AACCCCTGTGTCGTGGATTT 59.523 50.000 0.00 0.00 0.00 2.17
291 292 0.036306 ACCCCTGTGTCGTGGATTTC 59.964 55.000 0.00 0.00 0.00 2.17
292 293 1.019278 CCCCTGTGTCGTGGATTTCG 61.019 60.000 0.00 0.00 0.00 3.46
293 294 0.037697 CCCTGTGTCGTGGATTTCGA 60.038 55.000 0.00 0.00 34.91 3.71
302 303 3.948735 TGGATTTCGACCACCCTTC 57.051 52.632 0.00 0.00 32.03 3.46
303 304 1.358152 TGGATTTCGACCACCCTTCT 58.642 50.000 0.00 0.00 32.03 2.85
304 305 1.702957 TGGATTTCGACCACCCTTCTT 59.297 47.619 0.00 0.00 32.03 2.52
305 306 2.290071 TGGATTTCGACCACCCTTCTTC 60.290 50.000 0.00 0.00 32.03 2.87
306 307 2.357075 GATTTCGACCACCCTTCTTCC 58.643 52.381 0.00 0.00 0.00 3.46
307 308 1.430992 TTTCGACCACCCTTCTTCCT 58.569 50.000 0.00 0.00 0.00 3.36
308 309 1.430992 TTCGACCACCCTTCTTCCTT 58.569 50.000 0.00 0.00 0.00 3.36
309 310 1.430992 TCGACCACCCTTCTTCCTTT 58.569 50.000 0.00 0.00 0.00 3.11
310 311 1.346722 TCGACCACCCTTCTTCCTTTC 59.653 52.381 0.00 0.00 0.00 2.62
311 312 1.348036 CGACCACCCTTCTTCCTTTCT 59.652 52.381 0.00 0.00 0.00 2.52
312 313 2.613223 CGACCACCCTTCTTCCTTTCTC 60.613 54.545 0.00 0.00 0.00 2.87
313 314 1.705745 ACCACCCTTCTTCCTTTCTCC 59.294 52.381 0.00 0.00 0.00 3.71
314 315 1.988846 CCACCCTTCTTCCTTTCTCCT 59.011 52.381 0.00 0.00 0.00 3.69
315 316 2.026729 CCACCCTTCTTCCTTTCTCCTC 60.027 54.545 0.00 0.00 0.00 3.71
316 317 2.026729 CACCCTTCTTCCTTTCTCCTCC 60.027 54.545 0.00 0.00 0.00 4.30
317 318 2.269940 CCCTTCTTCCTTTCTCCTCCA 58.730 52.381 0.00 0.00 0.00 3.86
318 319 2.026729 CCCTTCTTCCTTTCTCCTCCAC 60.027 54.545 0.00 0.00 0.00 4.02
319 320 2.026729 CCTTCTTCCTTTCTCCTCCACC 60.027 54.545 0.00 0.00 0.00 4.61
320 321 1.267121 TCTTCCTTTCTCCTCCACCG 58.733 55.000 0.00 0.00 0.00 4.94
321 322 0.250513 CTTCCTTTCTCCTCCACCGG 59.749 60.000 0.00 0.00 0.00 5.28
322 323 1.838073 TTCCTTTCTCCTCCACCGGC 61.838 60.000 0.00 0.00 0.00 6.13
323 324 2.125512 CTTTCTCCTCCACCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
324 325 4.388499 TTTCTCCTCCACCGGCGC 62.388 66.667 0.00 0.00 0.00 6.53
346 347 4.393778 GGTCGGAGTGGGGGAGGA 62.394 72.222 0.00 0.00 0.00 3.71
347 348 2.284405 GTCGGAGTGGGGGAGGAA 60.284 66.667 0.00 0.00 0.00 3.36
348 349 2.038975 TCGGAGTGGGGGAGGAAG 59.961 66.667 0.00 0.00 0.00 3.46
349 350 3.083997 CGGAGTGGGGGAGGAAGG 61.084 72.222 0.00 0.00 0.00 3.46
350 351 2.454941 GGAGTGGGGGAGGAAGGA 59.545 66.667 0.00 0.00 0.00 3.36
351 352 1.690985 GGAGTGGGGGAGGAAGGAG 60.691 68.421 0.00 0.00 0.00 3.69
352 353 1.690985 GAGTGGGGGAGGAAGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
353 354 2.692741 GTGGGGGAGGAAGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
354 355 3.216371 TGGGGGAGGAAGGAGGGT 61.216 66.667 0.00 0.00 0.00 4.34
355 356 2.692741 GGGGGAGGAAGGAGGGTG 60.693 72.222 0.00 0.00 0.00 4.61
356 357 2.125225 GGGGAGGAAGGAGGGTGT 59.875 66.667 0.00 0.00 0.00 4.16
357 358 2.301738 GGGGAGGAAGGAGGGTGTG 61.302 68.421 0.00 0.00 0.00 3.82
358 359 1.539124 GGGAGGAAGGAGGGTGTGT 60.539 63.158 0.00 0.00 0.00 3.72
359 360 1.554583 GGGAGGAAGGAGGGTGTGTC 61.555 65.000 0.00 0.00 0.00 3.67
360 361 1.554583 GGAGGAAGGAGGGTGTGTCC 61.555 65.000 0.00 0.00 0.00 4.02
361 362 1.889530 GAGGAAGGAGGGTGTGTCCG 61.890 65.000 0.00 0.00 39.30 4.79
362 363 2.214920 GGAAGGAGGGTGTGTCCGT 61.215 63.158 0.00 0.00 39.30 4.69
363 364 1.004918 GAAGGAGGGTGTGTCCGTG 60.005 63.158 0.00 0.00 39.30 4.94
364 365 1.755393 GAAGGAGGGTGTGTCCGTGT 61.755 60.000 0.00 0.00 39.30 4.49
365 366 2.030562 GGAGGGTGTGTCCGTGTG 59.969 66.667 0.00 0.00 37.00 3.82
366 367 2.803817 GGAGGGTGTGTCCGTGTGT 61.804 63.158 0.00 0.00 37.00 3.72
367 368 1.466025 GGAGGGTGTGTCCGTGTGTA 61.466 60.000 0.00 0.00 37.00 2.90
368 369 0.038526 GAGGGTGTGTCCGTGTGTAG 60.039 60.000 0.00 0.00 37.00 2.74
369 370 0.757935 AGGGTGTGTCCGTGTGTAGT 60.758 55.000 0.00 0.00 37.00 2.73
370 371 0.599204 GGGTGTGTCCGTGTGTAGTG 60.599 60.000 0.00 0.00 37.00 2.74
371 372 0.599204 GGTGTGTCCGTGTGTAGTGG 60.599 60.000 0.00 0.00 0.00 4.00
372 373 0.103572 GTGTGTCCGTGTGTAGTGGT 59.896 55.000 0.00 0.00 0.00 4.16
373 374 1.337703 GTGTGTCCGTGTGTAGTGGTA 59.662 52.381 0.00 0.00 0.00 3.25
374 375 1.610038 TGTGTCCGTGTGTAGTGGTAG 59.390 52.381 0.00 0.00 0.00 3.18
375 376 1.610522 GTGTCCGTGTGTAGTGGTAGT 59.389 52.381 0.00 0.00 0.00 2.73
376 377 2.035066 GTGTCCGTGTGTAGTGGTAGTT 59.965 50.000 0.00 0.00 0.00 2.24
377 378 2.694628 TGTCCGTGTGTAGTGGTAGTTT 59.305 45.455 0.00 0.00 0.00 2.66
378 379 3.132646 TGTCCGTGTGTAGTGGTAGTTTT 59.867 43.478 0.00 0.00 0.00 2.43
379 380 3.737774 GTCCGTGTGTAGTGGTAGTTTTC 59.262 47.826 0.00 0.00 0.00 2.29
380 381 3.638160 TCCGTGTGTAGTGGTAGTTTTCT 59.362 43.478 0.00 0.00 0.00 2.52
381 382 3.985925 CCGTGTGTAGTGGTAGTTTTCTC 59.014 47.826 0.00 0.00 0.00 2.87
382 383 3.985925 CGTGTGTAGTGGTAGTTTTCTCC 59.014 47.826 0.00 0.00 0.00 3.71
383 384 4.261909 CGTGTGTAGTGGTAGTTTTCTCCT 60.262 45.833 0.00 0.00 0.00 3.69
384 385 5.608449 GTGTGTAGTGGTAGTTTTCTCCTT 58.392 41.667 0.00 0.00 0.00 3.36
385 386 5.695363 GTGTGTAGTGGTAGTTTTCTCCTTC 59.305 44.000 0.00 0.00 0.00 3.46
386 387 5.601313 TGTGTAGTGGTAGTTTTCTCCTTCT 59.399 40.000 0.00 0.00 0.00 2.85
387 388 6.099269 TGTGTAGTGGTAGTTTTCTCCTTCTT 59.901 38.462 0.00 0.00 0.00 2.52
388 389 6.990939 GTGTAGTGGTAGTTTTCTCCTTCTTT 59.009 38.462 0.00 0.00 0.00 2.52
389 390 7.498239 GTGTAGTGGTAGTTTTCTCCTTCTTTT 59.502 37.037 0.00 0.00 0.00 2.27
390 391 7.713942 TGTAGTGGTAGTTTTCTCCTTCTTTTC 59.286 37.037 0.00 0.00 0.00 2.29
391 392 6.901300 AGTGGTAGTTTTCTCCTTCTTTTCT 58.099 36.000 0.00 0.00 0.00 2.52
392 393 7.347252 AGTGGTAGTTTTCTCCTTCTTTTCTT 58.653 34.615 0.00 0.00 0.00 2.52
393 394 7.499563 AGTGGTAGTTTTCTCCTTCTTTTCTTC 59.500 37.037 0.00 0.00 0.00 2.87
394 395 7.499563 GTGGTAGTTTTCTCCTTCTTTTCTTCT 59.500 37.037 0.00 0.00 0.00 2.85
395 396 7.715686 TGGTAGTTTTCTCCTTCTTTTCTTCTC 59.284 37.037 0.00 0.00 0.00 2.87
396 397 7.173562 GGTAGTTTTCTCCTTCTTTTCTTCTCC 59.826 40.741 0.00 0.00 0.00 3.71
397 398 6.065374 AGTTTTCTCCTTCTTTTCTTCTCCC 58.935 40.000 0.00 0.00 0.00 4.30
398 399 5.913946 TTTCTCCTTCTTTTCTTCTCCCT 57.086 39.130 0.00 0.00 0.00 4.20
399 400 4.899352 TCTCCTTCTTTTCTTCTCCCTG 57.101 45.455 0.00 0.00 0.00 4.45
400 401 3.008485 TCTCCTTCTTTTCTTCTCCCTGC 59.992 47.826 0.00 0.00 0.00 4.85
401 402 2.040412 TCCTTCTTTTCTTCTCCCTGCC 59.960 50.000 0.00 0.00 0.00 4.85
402 403 2.224867 CCTTCTTTTCTTCTCCCTGCCA 60.225 50.000 0.00 0.00 0.00 4.92
403 404 3.490348 CTTCTTTTCTTCTCCCTGCCAA 58.510 45.455 0.00 0.00 0.00 4.52
404 405 3.593442 TCTTTTCTTCTCCCTGCCAAA 57.407 42.857 0.00 0.00 0.00 3.28
405 406 4.118168 TCTTTTCTTCTCCCTGCCAAAT 57.882 40.909 0.00 0.00 0.00 2.32
406 407 5.255397 TCTTTTCTTCTCCCTGCCAAATA 57.745 39.130 0.00 0.00 0.00 1.40
407 408 5.640147 TCTTTTCTTCTCCCTGCCAAATAA 58.360 37.500 0.00 0.00 0.00 1.40
408 409 6.074648 TCTTTTCTTCTCCCTGCCAAATAAA 58.925 36.000 0.00 0.00 0.00 1.40
409 410 5.982890 TTTCTTCTCCCTGCCAAATAAAG 57.017 39.130 0.00 0.00 0.00 1.85
410 411 3.356290 TCTTCTCCCTGCCAAATAAAGC 58.644 45.455 0.00 0.00 0.00 3.51
411 412 1.750193 TCTCCCTGCCAAATAAAGCG 58.250 50.000 0.00 0.00 0.00 4.68
412 413 0.740737 CTCCCTGCCAAATAAAGCGG 59.259 55.000 0.00 0.00 35.04 5.52
413 414 1.141665 CCCTGCCAAATAAAGCGGC 59.858 57.895 0.00 0.00 46.43 6.53
416 417 2.582226 GCCAAATAAAGCGGCGGC 60.582 61.111 9.78 8.43 35.79 6.53
417 418 2.104132 CCAAATAAAGCGGCGGCC 59.896 61.111 13.24 9.54 41.24 6.13
418 419 2.705821 CCAAATAAAGCGGCGGCCA 61.706 57.895 20.71 0.00 41.24 5.36
419 420 1.226660 CAAATAAAGCGGCGGCCAG 60.227 57.895 20.71 12.86 41.24 4.85
420 421 1.377987 AAATAAAGCGGCGGCCAGA 60.378 52.632 20.71 0.00 41.24 3.86
421 422 0.751643 AAATAAAGCGGCGGCCAGAT 60.752 50.000 20.71 7.84 41.24 2.90
422 423 1.166531 AATAAAGCGGCGGCCAGATC 61.167 55.000 20.71 4.67 41.24 2.75
423 424 3.750373 TAAAGCGGCGGCCAGATCC 62.750 63.158 20.71 1.21 41.24 3.36
430 431 3.233980 CGGCCAGATCCGGATCCA 61.234 66.667 35.53 1.08 45.38 3.41
431 432 2.587247 CGGCCAGATCCGGATCCAT 61.587 63.158 35.53 19.41 45.38 3.41
432 433 1.298014 GGCCAGATCCGGATCCATC 59.702 63.158 35.53 24.47 38.58 3.51
433 434 1.298014 GCCAGATCCGGATCCATCC 59.702 63.158 35.53 20.15 43.65 3.51
434 435 1.986413 CCAGATCCGGATCCATCCC 59.014 63.158 35.53 15.00 44.24 3.85
435 436 1.593787 CAGATCCGGATCCATCCCG 59.406 63.158 35.53 16.56 44.24 5.14
436 437 1.156330 AGATCCGGATCCATCCCGT 59.844 57.895 35.53 16.52 45.14 5.28
437 438 0.900647 AGATCCGGATCCATCCCGTC 60.901 60.000 35.53 13.86 45.14 4.79
438 439 0.900647 GATCCGGATCCATCCCGTCT 60.901 60.000 30.80 0.00 45.14 4.18
439 440 0.900647 ATCCGGATCCATCCCGTCTC 60.901 60.000 12.38 0.00 45.14 3.36
440 441 1.531840 CCGGATCCATCCCGTCTCT 60.532 63.158 13.41 0.00 45.14 3.10
441 442 1.115930 CCGGATCCATCCCGTCTCTT 61.116 60.000 13.41 0.00 45.14 2.85
442 443 0.315568 CGGATCCATCCCGTCTCTTC 59.684 60.000 13.41 0.00 44.24 2.87
443 444 0.682292 GGATCCATCCCGTCTCTTCC 59.318 60.000 6.95 0.00 41.20 3.46
444 445 1.710816 GATCCATCCCGTCTCTTCCT 58.289 55.000 0.00 0.00 0.00 3.36
445 446 1.616374 GATCCATCCCGTCTCTTCCTC 59.384 57.143 0.00 0.00 0.00 3.71
446 447 0.335019 TCCATCCCGTCTCTTCCTCA 59.665 55.000 0.00 0.00 0.00 3.86
447 448 1.195115 CCATCCCGTCTCTTCCTCAA 58.805 55.000 0.00 0.00 0.00 3.02
448 449 1.765314 CCATCCCGTCTCTTCCTCAAT 59.235 52.381 0.00 0.00 0.00 2.57
449 450 2.171448 CCATCCCGTCTCTTCCTCAATT 59.829 50.000 0.00 0.00 0.00 2.32
450 451 3.370953 CCATCCCGTCTCTTCCTCAATTT 60.371 47.826 0.00 0.00 0.00 1.82
451 452 4.265073 CATCCCGTCTCTTCCTCAATTTT 58.735 43.478 0.00 0.00 0.00 1.82
452 453 5.428253 CATCCCGTCTCTTCCTCAATTTTA 58.572 41.667 0.00 0.00 0.00 1.52
453 454 5.693769 TCCCGTCTCTTCCTCAATTTTAT 57.306 39.130 0.00 0.00 0.00 1.40
454 455 5.671493 TCCCGTCTCTTCCTCAATTTTATC 58.329 41.667 0.00 0.00 0.00 1.75
455 456 4.816925 CCCGTCTCTTCCTCAATTTTATCC 59.183 45.833 0.00 0.00 0.00 2.59
456 457 4.816925 CCGTCTCTTCCTCAATTTTATCCC 59.183 45.833 0.00 0.00 0.00 3.85
457 458 4.816925 CGTCTCTTCCTCAATTTTATCCCC 59.183 45.833 0.00 0.00 0.00 4.81
458 459 5.133941 GTCTCTTCCTCAATTTTATCCCCC 58.866 45.833 0.00 0.00 0.00 5.40
459 460 5.046522 TCTCTTCCTCAATTTTATCCCCCT 58.953 41.667 0.00 0.00 0.00 4.79
460 461 5.132816 TCTCTTCCTCAATTTTATCCCCCTC 59.867 44.000 0.00 0.00 0.00 4.30
461 462 5.046522 TCTTCCTCAATTTTATCCCCCTCT 58.953 41.667 0.00 0.00 0.00 3.69
462 463 5.132816 TCTTCCTCAATTTTATCCCCCTCTC 59.867 44.000 0.00 0.00 0.00 3.20
463 464 3.391296 TCCTCAATTTTATCCCCCTCTCG 59.609 47.826 0.00 0.00 0.00 4.04
464 465 3.136626 CCTCAATTTTATCCCCCTCTCGT 59.863 47.826 0.00 0.00 0.00 4.18
465 466 4.385310 CCTCAATTTTATCCCCCTCTCGTT 60.385 45.833 0.00 0.00 0.00 3.85
466 467 4.777463 TCAATTTTATCCCCCTCTCGTTC 58.223 43.478 0.00 0.00 0.00 3.95
467 468 4.226394 TCAATTTTATCCCCCTCTCGTTCA 59.774 41.667 0.00 0.00 0.00 3.18
468 469 3.622166 TTTTATCCCCCTCTCGTTCAC 57.378 47.619 0.00 0.00 0.00 3.18
469 470 1.108776 TTATCCCCCTCTCGTTCACG 58.891 55.000 0.00 0.00 41.45 4.35
470 471 0.754217 TATCCCCCTCTCGTTCACGG 60.754 60.000 0.00 0.00 40.29 4.94
471 472 2.800159 ATCCCCCTCTCGTTCACGGT 62.800 60.000 0.00 0.00 40.29 4.83
472 473 2.261671 CCCCTCTCGTTCACGGTG 59.738 66.667 0.56 0.56 40.29 4.94
473 474 2.571216 CCCCTCTCGTTCACGGTGT 61.571 63.158 8.17 0.00 40.29 4.16
474 475 1.366366 CCCTCTCGTTCACGGTGTT 59.634 57.895 8.17 0.00 40.29 3.32
475 476 0.944311 CCCTCTCGTTCACGGTGTTG 60.944 60.000 8.17 0.00 40.29 3.33
476 477 0.031585 CCTCTCGTTCACGGTGTTGA 59.968 55.000 8.17 4.08 40.29 3.18
477 478 1.537348 CCTCTCGTTCACGGTGTTGAA 60.537 52.381 8.17 0.00 40.29 2.69
478 479 2.198406 CTCTCGTTCACGGTGTTGAAA 58.802 47.619 8.17 0.00 37.24 2.69
479 480 2.198406 TCTCGTTCACGGTGTTGAAAG 58.802 47.619 8.17 0.00 37.24 2.62
480 481 1.931172 CTCGTTCACGGTGTTGAAAGT 59.069 47.619 8.17 0.00 37.24 2.66
481 482 1.661617 TCGTTCACGGTGTTGAAAGTG 59.338 47.619 8.17 0.00 37.24 3.16
482 483 1.267832 CGTTCACGGTGTTGAAAGTGG 60.268 52.381 8.17 0.00 37.24 4.00
483 484 1.064952 GTTCACGGTGTTGAAAGTGGG 59.935 52.381 8.17 0.00 37.24 4.61
484 485 0.464735 TCACGGTGTTGAAAGTGGGG 60.465 55.000 8.17 0.00 35.50 4.96
485 486 1.826487 ACGGTGTTGAAAGTGGGGC 60.826 57.895 0.00 0.00 0.00 5.80
486 487 2.903547 CGGTGTTGAAAGTGGGGCG 61.904 63.158 0.00 0.00 0.00 6.13
487 488 1.826487 GGTGTTGAAAGTGGGGCGT 60.826 57.895 0.00 0.00 0.00 5.68
488 489 1.358759 GTGTTGAAAGTGGGGCGTG 59.641 57.895 0.00 0.00 0.00 5.34
489 490 1.826054 TGTTGAAAGTGGGGCGTGG 60.826 57.895 0.00 0.00 0.00 4.94
490 491 1.826487 GTTGAAAGTGGGGCGTGGT 60.826 57.895 0.00 0.00 0.00 4.16
491 492 1.076632 TTGAAAGTGGGGCGTGGTT 60.077 52.632 0.00 0.00 0.00 3.67
492 493 1.104577 TTGAAAGTGGGGCGTGGTTC 61.105 55.000 0.00 0.00 0.00 3.62
493 494 2.203437 AAAGTGGGGCGTGGTTCC 60.203 61.111 0.00 0.00 0.00 3.62
494 495 2.692273 GAAAGTGGGGCGTGGTTCCT 62.692 60.000 0.00 0.00 0.00 3.36
495 496 1.420532 AAAGTGGGGCGTGGTTCCTA 61.421 55.000 0.00 0.00 0.00 2.94
496 497 1.205460 AAGTGGGGCGTGGTTCCTAT 61.205 55.000 0.00 0.00 0.00 2.57
497 498 1.451387 GTGGGGCGTGGTTCCTATG 60.451 63.158 0.00 0.00 0.00 2.23
498 499 2.192175 GGGGCGTGGTTCCTATGG 59.808 66.667 0.00 0.00 0.00 2.74
499 500 2.676265 GGGGCGTGGTTCCTATGGT 61.676 63.158 0.00 0.00 0.00 3.55
500 501 1.451387 GGGCGTGGTTCCTATGGTG 60.451 63.158 0.00 0.00 0.00 4.17
501 502 1.451387 GGCGTGGTTCCTATGGTGG 60.451 63.158 0.00 0.00 0.00 4.61
502 503 2.112815 GCGTGGTTCCTATGGTGGC 61.113 63.158 0.00 0.00 0.00 5.01
503 504 1.298340 CGTGGTTCCTATGGTGGCA 59.702 57.895 0.00 0.00 0.00 4.92
504 505 1.024579 CGTGGTTCCTATGGTGGCAC 61.025 60.000 9.70 9.70 0.00 5.01
505 506 0.679960 GTGGTTCCTATGGTGGCACC 60.680 60.000 29.75 29.75 42.52 5.01
506 507 1.451387 GGTTCCTATGGTGGCACCG 60.451 63.158 30.14 16.78 42.58 4.94
507 508 1.298667 GTTCCTATGGTGGCACCGT 59.701 57.895 32.31 32.31 42.58 4.83
508 509 0.322187 GTTCCTATGGTGGCACCGTT 60.322 55.000 34.48 24.24 42.58 4.44
509 510 0.035820 TTCCTATGGTGGCACCGTTC 60.036 55.000 34.48 10.69 42.58 3.95
510 511 1.813753 CCTATGGTGGCACCGTTCG 60.814 63.158 34.48 24.29 42.58 3.95
511 512 1.079405 CTATGGTGGCACCGTTCGT 60.079 57.895 34.48 17.94 42.58 3.85
512 513 1.358725 CTATGGTGGCACCGTTCGTG 61.359 60.000 34.48 18.62 42.58 4.35
513 514 2.102109 TATGGTGGCACCGTTCGTGT 62.102 55.000 34.48 14.64 44.97 4.49
517 518 3.698463 GGCACCGTTCGTGTCGTG 61.698 66.667 0.00 0.00 44.97 4.35
518 519 2.958016 GCACCGTTCGTGTCGTGT 60.958 61.111 0.00 0.00 44.97 4.49
519 520 2.924285 GCACCGTTCGTGTCGTGTC 61.924 63.158 0.00 0.00 44.97 3.67
523 524 0.856641 CCGTTCGTGTCGTGTCAAAT 59.143 50.000 0.00 0.00 0.00 2.32
527 528 3.362534 CGTTCGTGTCGTGTCAAATGATA 59.637 43.478 0.00 0.00 0.00 2.15
706 715 7.755373 GGATAAGAGCCTACATTTGTTTTTGAC 59.245 37.037 0.00 0.00 0.00 3.18
754 764 1.833787 TAAGGGCCACGGTGGTTCTC 61.834 60.000 26.86 12.39 40.46 2.87
1058 1186 4.159266 CGACCCTGAGCTATCGGA 57.841 61.111 0.00 0.00 33.17 4.55
1560 1692 3.450817 GGAAGAAGGAGAAGGAGAGGAAG 59.549 52.174 0.00 0.00 0.00 3.46
1561 1693 4.349365 GAAGAAGGAGAAGGAGAGGAAGA 58.651 47.826 0.00 0.00 0.00 2.87
1562 1694 4.412060 AGAAGGAGAAGGAGAGGAAGAA 57.588 45.455 0.00 0.00 0.00 2.52
1596 1740 2.590645 CAGCAGCAGCAGGAGGAT 59.409 61.111 3.17 0.00 45.49 3.24
1646 1808 4.193826 TCACCGAGAAGATGGAAAGAAG 57.806 45.455 0.00 0.00 0.00 2.85
1662 1827 1.007842 AGAAGGGAGGAGGAAGAGGAC 59.992 57.143 0.00 0.00 0.00 3.85
1668 1833 0.033894 AGGAGGAAGAGGACGAGGAC 60.034 60.000 0.00 0.00 0.00 3.85
1689 1854 1.682684 GGAGGAGACGAGGAGGCAA 60.683 63.158 0.00 0.00 0.00 4.52
1839 2004 4.292178 GCGATGGAGGCGGAGAGG 62.292 72.222 0.00 0.00 0.00 3.69
1861 2026 3.531207 CAGCGATGGAGGCGGAGA 61.531 66.667 0.00 0.00 35.00 3.71
1862 2027 3.222855 AGCGATGGAGGCGGAGAG 61.223 66.667 0.00 0.00 35.00 3.20
2179 2398 2.100631 GGTCAGTGCGGTGGATTCG 61.101 63.158 0.00 0.00 0.00 3.34
2268 2487 4.754372 TTTGCATAGACTGTTTGCTCTG 57.246 40.909 11.01 0.00 37.28 3.35
2272 2491 3.332919 CATAGACTGTTTGCTCTGTGCT 58.667 45.455 3.20 0.00 43.37 4.40
2273 2492 4.498241 CATAGACTGTTTGCTCTGTGCTA 58.502 43.478 3.20 0.00 43.37 3.49
2349 2568 5.622007 GCAGTATTCCATAGTTTTTGCTGCA 60.622 40.000 0.00 0.00 43.27 4.41
2616 2839 9.534565 TCCTCTAATTTGATCAGAAAACTATCG 57.465 33.333 0.00 0.00 0.00 2.92
2680 3061 2.899838 GTGTTGGCGTGCTGACCA 60.900 61.111 0.00 0.00 0.00 4.02
2794 3175 5.467399 CCACCGTAACAATCAGTCAAAACTA 59.533 40.000 0.00 0.00 33.25 2.24
2795 3176 6.148811 CCACCGTAACAATCAGTCAAAACTAT 59.851 38.462 0.00 0.00 33.25 2.12
2796 3177 7.015289 CACCGTAACAATCAGTCAAAACTATG 58.985 38.462 0.00 0.00 33.25 2.23
2797 3178 6.021596 CCGTAACAATCAGTCAAAACTATGC 58.978 40.000 0.00 0.00 33.25 3.14
2875 3260 8.644374 AAGCCATGGTTTTAAGTAATTGTAGA 57.356 30.769 14.67 0.00 0.00 2.59
2876 3261 8.281212 AGCCATGGTTTTAAGTAATTGTAGAG 57.719 34.615 14.67 0.00 0.00 2.43
2878 3263 9.169592 GCCATGGTTTTAAGTAATTGTAGAGTA 57.830 33.333 14.67 0.00 0.00 2.59
2888 3273 7.063934 AGTAATTGTAGAGTATTAGGTGCCC 57.936 40.000 0.00 0.00 0.00 5.36
2889 3274 5.968676 AATTGTAGAGTATTAGGTGCCCA 57.031 39.130 0.00 0.00 0.00 5.36
2911 3298 0.446222 CGTTGGAATACCGTGGCTTG 59.554 55.000 0.00 0.00 39.42 4.01
3078 3467 7.418337 TCTATTGAGTCCTATGCAGTTTACA 57.582 36.000 0.00 0.00 0.00 2.41
3094 3483 2.031258 TACACATTGCATACCCGGTG 57.969 50.000 0.00 0.00 0.00 4.94
3151 3540 4.874966 CCTTGCAGATCTACTCCTTCAAAG 59.125 45.833 0.00 0.00 0.00 2.77
3370 3777 9.120538 ACAGTAGTATTTTCTTCTTCAGCAAAA 57.879 29.630 0.00 0.00 0.00 2.44
3567 3999 4.471726 AACCGCTACGAGGTCGCG 62.472 66.667 0.00 0.00 45.06 5.87
3635 4067 1.024271 GCAGTGTTGAGCCTTGAACA 58.976 50.000 0.00 0.00 0.00 3.18
3757 4189 9.456147 CTAGTGCAGATGGTAGTTCTACTATAT 57.544 37.037 8.42 3.82 32.65 0.86
3774 4206 9.015367 TCTACTATATATGAGAAGGTTGTGCTC 57.985 37.037 0.00 0.00 0.00 4.26
4136 4794 2.164422 GGCAAGTAGGATTTCCAACTGC 59.836 50.000 0.00 2.51 38.89 4.40
4182 4873 2.584791 CAACTAGAATGCCGCACAAAC 58.415 47.619 0.00 0.00 0.00 2.93
4194 4888 4.878971 TGCCGCACAAACTACATATACAAT 59.121 37.500 0.00 0.00 0.00 2.71
4294 5266 2.064762 CAAGAGACAGTCAAAGGCGAG 58.935 52.381 2.66 0.00 0.00 5.03
4324 5371 5.295950 CCAAAATGTTCATGCACTTGGTTA 58.704 37.500 6.77 0.00 33.44 2.85
4325 5372 5.757320 CCAAAATGTTCATGCACTTGGTTAA 59.243 36.000 6.77 0.00 33.44 2.01
4326 5373 6.427547 CCAAAATGTTCATGCACTTGGTTAAT 59.572 34.615 6.77 0.00 33.44 1.40
4327 5374 7.041235 CCAAAATGTTCATGCACTTGGTTAATT 60.041 33.333 6.77 0.00 33.44 1.40
4351 5398 4.946784 ACAGATTGCGAAGGTCAAATAC 57.053 40.909 0.00 0.00 0.00 1.89
4393 5440 4.018506 TCTTGTAATCATCAGGAGCCCAAA 60.019 41.667 0.00 0.00 0.00 3.28
4404 6572 0.521735 GAGCCCAAAATGGACGTGTC 59.478 55.000 0.00 0.00 40.96 3.67
4405 6573 1.209127 GCCCAAAATGGACGTGTCG 59.791 57.895 0.00 0.00 40.96 4.35
4406 6574 1.209127 CCCAAAATGGACGTGTCGC 59.791 57.895 0.00 0.00 40.96 5.19
4407 6575 1.511318 CCCAAAATGGACGTGTCGCA 61.511 55.000 0.00 0.00 40.96 5.10
4408 6576 0.521291 CCAAAATGGACGTGTCGCAT 59.479 50.000 0.00 0.00 40.96 4.73
4411 6579 0.321210 AAATGGACGTGTCGCATCCA 60.321 50.000 3.26 3.26 46.36 3.41
4414 6582 2.094659 GGACGTGTCGCATCCAGTG 61.095 63.158 0.00 0.00 32.35 3.66
4415 6583 1.372997 GACGTGTCGCATCCAGTGT 60.373 57.895 0.00 0.00 0.00 3.55
4416 6584 1.617755 GACGTGTCGCATCCAGTGTG 61.618 60.000 0.00 0.00 39.73 3.82
4417 6585 1.664649 CGTGTCGCATCCAGTGTGT 60.665 57.895 0.00 0.00 39.38 3.72
4418 6586 0.388006 CGTGTCGCATCCAGTGTGTA 60.388 55.000 0.00 0.00 39.38 2.90
4419 6587 1.068474 GTGTCGCATCCAGTGTGTAC 58.932 55.000 0.00 0.00 39.38 2.90
4420 6588 0.037697 TGTCGCATCCAGTGTGTACC 60.038 55.000 0.00 0.00 39.38 3.34
4421 6589 0.739813 GTCGCATCCAGTGTGTACCC 60.740 60.000 0.00 0.00 39.38 3.69
4422 6590 1.809619 CGCATCCAGTGTGTACCCG 60.810 63.158 0.00 0.00 33.61 5.28
4513 6681 1.392589 ACAAGGTGAGCACAACAAGG 58.607 50.000 0.99 0.00 35.97 3.61
4517 6685 3.059352 AGGTGAGCACAACAAGGATAC 57.941 47.619 0.99 0.00 35.97 2.24
4539 6711 9.991388 GATACTAACAAACACAAGTTACACAAA 57.009 29.630 0.00 0.00 36.84 2.83
4561 6735 8.292448 ACAAACTTACTTGAGCAATATCACAAG 58.708 33.333 0.00 0.00 43.30 3.16
4572 6746 8.833493 TGAGCAATATCACAAGATATGAAAGTG 58.167 33.333 0.00 0.00 44.67 3.16
4598 6772 4.036262 TGACACAAGTTAGCAATTCACACC 59.964 41.667 0.00 0.00 0.00 4.16
4617 6791 9.631257 TTCACACCAATCACAAGATATATCAAT 57.369 29.630 15.08 0.58 33.08 2.57
4647 6821 8.970691 GCAAGTATGAATTGCGGAATATAAAT 57.029 30.769 1.39 0.00 43.15 1.40
4655 6829 8.564574 TGAATTGCGGAATATAAATTGTAGACC 58.435 33.333 1.39 0.00 0.00 3.85
4686 6860 7.923414 ATCTCTACAAGGAAATAACCAACAC 57.077 36.000 0.00 0.00 0.00 3.32
4717 6891 8.723942 AATGAGGACAACAAGATAATAGTGAC 57.276 34.615 0.00 0.00 0.00 3.67
4768 6942 7.998964 ACCACAAATAAGGAGATATGGTTAAGG 59.001 37.037 0.00 0.00 35.70 2.69
4835 7009 2.024176 TGGAGGGAAGCTAGTCAACA 57.976 50.000 0.00 0.00 0.00 3.33
4858 7032 0.988832 GAGGGATGGGTGTTACCACA 59.011 55.000 0.00 0.00 44.72 4.17
4868 7042 2.364002 GGTGTTACCACAAAGGCACAAT 59.636 45.455 0.00 0.00 43.71 2.71
4870 7044 4.038162 GGTGTTACCACAAAGGCACAATAA 59.962 41.667 0.00 0.00 43.71 1.40
4876 7050 3.380142 CACAAAGGCACAATAACACCAC 58.620 45.455 0.00 0.00 0.00 4.16
4887 7061 1.493772 TAACACCACGAAAGCTCACG 58.506 50.000 10.23 10.23 0.00 4.35
4888 7062 1.772063 AACACCACGAAAGCTCACGC 61.772 55.000 11.44 0.00 0.00 5.34
4911 7085 4.832248 TGTTGTCCTTGAGATATCACCAC 58.168 43.478 5.32 0.00 0.00 4.16
4936 7110 2.032178 GGCGATTCTCAACCACTATTGC 59.968 50.000 0.00 0.00 0.00 3.56
4938 7112 3.375299 GCGATTCTCAACCACTATTGCTT 59.625 43.478 0.00 0.00 0.00 3.91
4939 7113 4.494855 GCGATTCTCAACCACTATTGCTTC 60.495 45.833 0.00 0.00 0.00 3.86
4940 7114 4.631377 CGATTCTCAACCACTATTGCTTCA 59.369 41.667 0.00 0.00 0.00 3.02
4972 7219 7.764617 AGGAGAGAGAATGGATCTATCACTTA 58.235 38.462 3.29 0.00 46.68 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.576447 AAATAATACAACTTCGGCCTTGG 57.424 39.130 0.00 0.00 0.00 3.61
1 2 8.973835 TTAAAAATAATACAACTTCGGCCTTG 57.026 30.769 0.00 0.12 0.00 3.61
2 3 9.984190 TTTTAAAAATAATACAACTTCGGCCTT 57.016 25.926 0.00 0.00 0.00 4.35
3 4 9.984190 TTTTTAAAAATAATACAACTTCGGCCT 57.016 25.926 9.31 0.00 0.00 5.19
27 28 9.628746 AGAAACATTACGCCGTTTATTTTATTT 57.371 25.926 0.00 0.00 35.53 1.40
84 85 8.409358 AAGAGTGGAGTTGTTATGCTATTTTT 57.591 30.769 0.00 0.00 0.00 1.94
85 86 9.686683 ATAAGAGTGGAGTTGTTATGCTATTTT 57.313 29.630 0.00 0.00 0.00 1.82
86 87 9.686683 AATAAGAGTGGAGTTGTTATGCTATTT 57.313 29.630 0.00 0.00 0.00 1.40
87 88 9.331282 GAATAAGAGTGGAGTTGTTATGCTATT 57.669 33.333 0.00 0.00 0.00 1.73
88 89 8.486210 TGAATAAGAGTGGAGTTGTTATGCTAT 58.514 33.333 0.00 0.00 0.00 2.97
89 90 7.847096 TGAATAAGAGTGGAGTTGTTATGCTA 58.153 34.615 0.00 0.00 0.00 3.49
90 91 6.711277 TGAATAAGAGTGGAGTTGTTATGCT 58.289 36.000 0.00 0.00 0.00 3.79
91 92 6.985188 TGAATAAGAGTGGAGTTGTTATGC 57.015 37.500 0.00 0.00 0.00 3.14
92 93 9.388506 AGAATGAATAAGAGTGGAGTTGTTATG 57.611 33.333 0.00 0.00 0.00 1.90
93 94 9.965902 AAGAATGAATAAGAGTGGAGTTGTTAT 57.034 29.630 0.00 0.00 0.00 1.89
94 95 9.793259 AAAGAATGAATAAGAGTGGAGTTGTTA 57.207 29.630 0.00 0.00 0.00 2.41
95 96 8.697507 AAAGAATGAATAAGAGTGGAGTTGTT 57.302 30.769 0.00 0.00 0.00 2.83
96 97 8.160106 AGAAAGAATGAATAAGAGTGGAGTTGT 58.840 33.333 0.00 0.00 0.00 3.32
97 98 8.558973 AGAAAGAATGAATAAGAGTGGAGTTG 57.441 34.615 0.00 0.00 0.00 3.16
99 100 9.883142 CTAAGAAAGAATGAATAAGAGTGGAGT 57.117 33.333 0.00 0.00 0.00 3.85
127 128 9.218440 ACTGAAACAAAATCAAAACAATGAGTT 57.782 25.926 0.00 0.00 43.89 3.01
128 129 8.776376 ACTGAAACAAAATCAAAACAATGAGT 57.224 26.923 0.00 0.00 31.76 3.41
159 160 8.878769 GCTTCCTTAAAGAACAAACAAAATGAA 58.121 29.630 0.00 0.00 37.12 2.57
160 161 8.257306 AGCTTCCTTAAAGAACAAACAAAATGA 58.743 29.630 0.00 0.00 37.12 2.57
161 162 8.424274 AGCTTCCTTAAAGAACAAACAAAATG 57.576 30.769 0.00 0.00 37.12 2.32
162 163 9.448438 AAAGCTTCCTTAAAGAACAAACAAAAT 57.552 25.926 0.00 0.00 37.12 1.82
163 164 8.840833 AAAGCTTCCTTAAAGAACAAACAAAA 57.159 26.923 0.00 0.00 37.12 2.44
164 165 8.840833 AAAAGCTTCCTTAAAGAACAAACAAA 57.159 26.923 0.00 0.00 37.12 2.83
171 172 9.841880 CCAAGTATAAAAGCTTCCTTAAAGAAC 57.158 33.333 0.00 0.00 37.12 3.01
172 173 9.582648 ACCAAGTATAAAAGCTTCCTTAAAGAA 57.417 29.630 0.00 0.00 37.12 2.52
173 174 9.010029 CACCAAGTATAAAAGCTTCCTTAAAGA 57.990 33.333 0.00 0.00 37.12 2.52
174 175 9.010029 TCACCAAGTATAAAAGCTTCCTTAAAG 57.990 33.333 0.00 0.00 38.08 1.85
175 176 8.927675 TCACCAAGTATAAAAGCTTCCTTAAA 57.072 30.769 0.00 0.00 0.00 1.52
176 177 8.927675 TTCACCAAGTATAAAAGCTTCCTTAA 57.072 30.769 0.00 0.00 0.00 1.85
177 178 8.789762 GTTTCACCAAGTATAAAAGCTTCCTTA 58.210 33.333 0.00 0.00 0.00 2.69
178 179 7.505923 AGTTTCACCAAGTATAAAAGCTTCCTT 59.494 33.333 0.00 0.00 0.00 3.36
179 180 7.004691 AGTTTCACCAAGTATAAAAGCTTCCT 58.995 34.615 0.00 0.00 0.00 3.36
180 181 7.215719 AGTTTCACCAAGTATAAAAGCTTCC 57.784 36.000 0.00 0.00 0.00 3.46
181 182 8.968242 CAAAGTTTCACCAAGTATAAAAGCTTC 58.032 33.333 0.00 0.00 0.00 3.86
182 183 7.926018 CCAAAGTTTCACCAAGTATAAAAGCTT 59.074 33.333 0.00 0.00 0.00 3.74
183 184 7.286775 TCCAAAGTTTCACCAAGTATAAAAGCT 59.713 33.333 0.00 0.00 0.00 3.74
184 185 7.430441 TCCAAAGTTTCACCAAGTATAAAAGC 58.570 34.615 0.00 0.00 0.00 3.51
185 186 9.463443 CTTCCAAAGTTTCACCAAGTATAAAAG 57.537 33.333 0.00 0.00 0.00 2.27
186 187 9.191479 TCTTCCAAAGTTTCACCAAGTATAAAA 57.809 29.630 0.00 0.00 0.00 1.52
187 188 8.754991 TCTTCCAAAGTTTCACCAAGTATAAA 57.245 30.769 0.00 0.00 0.00 1.40
188 189 8.754991 TTCTTCCAAAGTTTCACCAAGTATAA 57.245 30.769 0.00 0.00 0.00 0.98
189 190 8.754991 TTTCTTCCAAAGTTTCACCAAGTATA 57.245 30.769 0.00 0.00 0.00 1.47
190 191 7.201911 CCTTTCTTCCAAAGTTTCACCAAGTAT 60.202 37.037 0.00 0.00 0.00 2.12
191 192 6.096282 CCTTTCTTCCAAAGTTTCACCAAGTA 59.904 38.462 0.00 0.00 0.00 2.24
192 193 5.105351 CCTTTCTTCCAAAGTTTCACCAAGT 60.105 40.000 0.00 0.00 0.00 3.16
193 194 5.351458 CCTTTCTTCCAAAGTTTCACCAAG 58.649 41.667 0.00 0.00 0.00 3.61
194 195 4.161377 CCCTTTCTTCCAAAGTTTCACCAA 59.839 41.667 0.00 0.00 0.00 3.67
195 196 3.704061 CCCTTTCTTCCAAAGTTTCACCA 59.296 43.478 0.00 0.00 0.00 4.17
196 197 3.958147 TCCCTTTCTTCCAAAGTTTCACC 59.042 43.478 0.00 0.00 0.00 4.02
197 198 4.038042 CCTCCCTTTCTTCCAAAGTTTCAC 59.962 45.833 0.00 0.00 0.00 3.18
198 199 4.215109 CCTCCCTTTCTTCCAAAGTTTCA 58.785 43.478 0.00 0.00 0.00 2.69
199 200 3.574396 CCCTCCCTTTCTTCCAAAGTTTC 59.426 47.826 0.00 0.00 0.00 2.78
200 201 3.206639 TCCCTCCCTTTCTTCCAAAGTTT 59.793 43.478 0.00 0.00 0.00 2.66
201 202 2.789399 TCCCTCCCTTTCTTCCAAAGTT 59.211 45.455 0.00 0.00 0.00 2.66
202 203 2.108425 GTCCCTCCCTTTCTTCCAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
203 204 2.108250 TGTCCCTCCCTTTCTTCCAAAG 59.892 50.000 0.00 0.00 0.00 2.77
204 205 2.140224 TGTCCCTCCCTTTCTTCCAAA 58.860 47.619 0.00 0.00 0.00 3.28
205 206 1.827792 TGTCCCTCCCTTTCTTCCAA 58.172 50.000 0.00 0.00 0.00 3.53
206 207 1.423921 GTTGTCCCTCCCTTTCTTCCA 59.576 52.381 0.00 0.00 0.00 3.53
207 208 1.271982 GGTTGTCCCTCCCTTTCTTCC 60.272 57.143 0.00 0.00 0.00 3.46
208 209 2.201921 GGTTGTCCCTCCCTTTCTTC 57.798 55.000 0.00 0.00 0.00 2.87
220 221 0.036294 CGAGAGGAAAGGGGTTGTCC 60.036 60.000 0.00 0.00 0.00 4.02
221 222 0.685660 ACGAGAGGAAAGGGGTTGTC 59.314 55.000 0.00 0.00 0.00 3.18
222 223 1.137697 AACGAGAGGAAAGGGGTTGT 58.862 50.000 0.00 0.00 0.00 3.32
223 224 2.152016 GAAACGAGAGGAAAGGGGTTG 58.848 52.381 0.00 0.00 0.00 3.77
224 225 1.073444 GGAAACGAGAGGAAAGGGGTT 59.927 52.381 0.00 0.00 0.00 4.11
225 226 0.691332 GGAAACGAGAGGAAAGGGGT 59.309 55.000 0.00 0.00 0.00 4.95
226 227 0.984995 AGGAAACGAGAGGAAAGGGG 59.015 55.000 0.00 0.00 0.00 4.79
227 228 1.903183 AGAGGAAACGAGAGGAAAGGG 59.097 52.381 0.00 0.00 0.00 3.95
228 229 4.017808 TCTAGAGGAAACGAGAGGAAAGG 58.982 47.826 0.00 0.00 0.00 3.11
229 230 5.646577 TTCTAGAGGAAACGAGAGGAAAG 57.353 43.478 0.00 0.00 0.00 2.62
240 241 4.750098 CGCAAAGTCTGTTTCTAGAGGAAA 59.250 41.667 0.00 0.00 41.11 3.13
241 242 4.202223 ACGCAAAGTCTGTTTCTAGAGGAA 60.202 41.667 0.00 0.00 0.00 3.36
242 243 3.321111 ACGCAAAGTCTGTTTCTAGAGGA 59.679 43.478 0.00 0.00 0.00 3.71
243 244 3.430218 CACGCAAAGTCTGTTTCTAGAGG 59.570 47.826 0.00 0.00 0.00 3.69
244 245 4.299155 TCACGCAAAGTCTGTTTCTAGAG 58.701 43.478 0.00 0.00 0.00 2.43
245 246 4.299155 CTCACGCAAAGTCTGTTTCTAGA 58.701 43.478 0.00 0.00 0.00 2.43
246 247 3.430218 CCTCACGCAAAGTCTGTTTCTAG 59.570 47.826 0.00 0.00 0.00 2.43
247 248 3.181469 ACCTCACGCAAAGTCTGTTTCTA 60.181 43.478 0.00 0.00 0.00 2.10
248 249 2.213499 CCTCACGCAAAGTCTGTTTCT 58.787 47.619 0.00 0.00 0.00 2.52
249 250 1.940613 ACCTCACGCAAAGTCTGTTTC 59.059 47.619 0.00 0.00 0.00 2.78
250 251 1.940613 GACCTCACGCAAAGTCTGTTT 59.059 47.619 0.00 0.00 0.00 2.83
251 252 1.134521 TGACCTCACGCAAAGTCTGTT 60.135 47.619 0.00 0.00 0.00 3.16
252 253 0.464036 TGACCTCACGCAAAGTCTGT 59.536 50.000 0.00 0.00 0.00 3.41
253 254 1.261619 GTTGACCTCACGCAAAGTCTG 59.738 52.381 0.00 0.00 0.00 3.51
254 255 1.583054 GTTGACCTCACGCAAAGTCT 58.417 50.000 0.00 0.00 0.00 3.24
255 256 0.586802 GGTTGACCTCACGCAAAGTC 59.413 55.000 0.00 0.00 0.00 3.01
256 257 0.818040 GGGTTGACCTCACGCAAAGT 60.818 55.000 0.00 0.00 35.85 2.66
257 258 1.515521 GGGGTTGACCTCACGCAAAG 61.516 60.000 0.00 0.00 40.03 2.77
258 259 1.527380 GGGGTTGACCTCACGCAAA 60.527 57.895 0.00 0.00 40.03 3.68
259 260 2.112297 GGGGTTGACCTCACGCAA 59.888 61.111 0.00 0.00 40.03 4.85
260 261 2.847234 AGGGGTTGACCTCACGCA 60.847 61.111 2.36 0.00 39.62 5.24
261 262 2.358737 CAGGGGTTGACCTCACGC 60.359 66.667 2.36 0.00 39.62 5.34
262 263 1.301716 CACAGGGGTTGACCTCACG 60.302 63.158 2.36 0.00 39.62 4.35
263 264 0.250338 GACACAGGGGTTGACCTCAC 60.250 60.000 2.36 0.00 39.62 3.51
264 265 1.754380 CGACACAGGGGTTGACCTCA 61.754 60.000 2.36 0.00 39.62 3.86
265 266 1.004918 CGACACAGGGGTTGACCTC 60.005 63.158 0.00 0.00 39.34 3.85
266 267 1.764854 ACGACACAGGGGTTGACCT 60.765 57.895 0.00 0.00 43.08 3.85
267 268 1.597027 CACGACACAGGGGTTGACC 60.597 63.158 0.00 0.00 39.11 4.02
268 269 1.597027 CCACGACACAGGGGTTGAC 60.597 63.158 0.00 0.00 0.00 3.18
269 270 1.125093 ATCCACGACACAGGGGTTGA 61.125 55.000 0.00 0.00 35.77 3.18
270 271 0.250727 AATCCACGACACAGGGGTTG 60.251 55.000 0.00 0.00 35.77 3.77
271 272 0.476771 AAATCCACGACACAGGGGTT 59.523 50.000 0.00 0.00 35.77 4.11
272 273 0.036306 GAAATCCACGACACAGGGGT 59.964 55.000 0.00 0.00 35.77 4.95
273 274 1.019278 CGAAATCCACGACACAGGGG 61.019 60.000 0.00 0.00 35.56 4.79
274 275 0.037697 TCGAAATCCACGACACAGGG 60.038 55.000 0.00 0.00 34.85 4.45
275 276 3.507597 TCGAAATCCACGACACAGG 57.492 52.632 0.00 0.00 34.85 4.00
284 285 1.358152 AGAAGGGTGGTCGAAATCCA 58.642 50.000 1.74 0.00 0.00 3.41
285 286 2.357075 GAAGAAGGGTGGTCGAAATCC 58.643 52.381 0.00 0.00 0.00 3.01
286 287 2.027100 AGGAAGAAGGGTGGTCGAAATC 60.027 50.000 0.00 0.00 0.00 2.17
287 288 1.985895 AGGAAGAAGGGTGGTCGAAAT 59.014 47.619 0.00 0.00 0.00 2.17
288 289 1.430992 AGGAAGAAGGGTGGTCGAAA 58.569 50.000 0.00 0.00 0.00 3.46
289 290 1.430992 AAGGAAGAAGGGTGGTCGAA 58.569 50.000 0.00 0.00 0.00 3.71
290 291 1.346722 GAAAGGAAGAAGGGTGGTCGA 59.653 52.381 0.00 0.00 0.00 4.20
291 292 1.348036 AGAAAGGAAGAAGGGTGGTCG 59.652 52.381 0.00 0.00 0.00 4.79
292 293 2.290387 GGAGAAAGGAAGAAGGGTGGTC 60.290 54.545 0.00 0.00 0.00 4.02
293 294 1.705745 GGAGAAAGGAAGAAGGGTGGT 59.294 52.381 0.00 0.00 0.00 4.16
294 295 1.988846 AGGAGAAAGGAAGAAGGGTGG 59.011 52.381 0.00 0.00 0.00 4.61
295 296 2.026729 GGAGGAGAAAGGAAGAAGGGTG 60.027 54.545 0.00 0.00 0.00 4.61
296 297 2.270858 GGAGGAGAAAGGAAGAAGGGT 58.729 52.381 0.00 0.00 0.00 4.34
297 298 2.026729 GTGGAGGAGAAAGGAAGAAGGG 60.027 54.545 0.00 0.00 0.00 3.95
298 299 2.026729 GGTGGAGGAGAAAGGAAGAAGG 60.027 54.545 0.00 0.00 0.00 3.46
299 300 2.354203 CGGTGGAGGAGAAAGGAAGAAG 60.354 54.545 0.00 0.00 0.00 2.85
300 301 1.623811 CGGTGGAGGAGAAAGGAAGAA 59.376 52.381 0.00 0.00 0.00 2.52
301 302 1.267121 CGGTGGAGGAGAAAGGAAGA 58.733 55.000 0.00 0.00 0.00 2.87
302 303 0.250513 CCGGTGGAGGAGAAAGGAAG 59.749 60.000 0.00 0.00 0.00 3.46
303 304 1.838073 GCCGGTGGAGGAGAAAGGAA 61.838 60.000 1.90 0.00 0.00 3.36
304 305 2.291043 GCCGGTGGAGGAGAAAGGA 61.291 63.158 1.90 0.00 0.00 3.36
305 306 2.269241 GCCGGTGGAGGAGAAAGG 59.731 66.667 1.90 0.00 0.00 3.11
306 307 2.125512 CGCCGGTGGAGGAGAAAG 60.126 66.667 7.26 0.00 32.51 2.62
307 308 4.388499 GCGCCGGTGGAGGAGAAA 62.388 66.667 18.41 0.00 32.51 2.52
329 330 3.918328 TTCCTCCCCCACTCCGACC 62.918 68.421 0.00 0.00 0.00 4.79
330 331 2.284405 TTCCTCCCCCACTCCGAC 60.284 66.667 0.00 0.00 0.00 4.79
331 332 2.038975 CTTCCTCCCCCACTCCGA 59.961 66.667 0.00 0.00 0.00 4.55
332 333 3.083997 CCTTCCTCCCCCACTCCG 61.084 72.222 0.00 0.00 0.00 4.63
333 334 1.690985 CTCCTTCCTCCCCCACTCC 60.691 68.421 0.00 0.00 0.00 3.85
334 335 1.690985 CCTCCTTCCTCCCCCACTC 60.691 68.421 0.00 0.00 0.00 3.51
335 336 2.456840 CCTCCTTCCTCCCCCACT 59.543 66.667 0.00 0.00 0.00 4.00
336 337 2.692741 CCCTCCTTCCTCCCCCAC 60.693 72.222 0.00 0.00 0.00 4.61
337 338 3.216371 ACCCTCCTTCCTCCCCCA 61.216 66.667 0.00 0.00 0.00 4.96
338 339 2.692741 CACCCTCCTTCCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
339 340 2.125225 ACACCCTCCTTCCTCCCC 59.875 66.667 0.00 0.00 0.00 4.81
340 341 1.539124 ACACACCCTCCTTCCTCCC 60.539 63.158 0.00 0.00 0.00 4.30
341 342 1.554583 GGACACACCCTCCTTCCTCC 61.555 65.000 0.00 0.00 0.00 4.30
342 343 1.889530 CGGACACACCCTCCTTCCTC 61.890 65.000 0.00 0.00 34.64 3.71
343 344 1.913762 CGGACACACCCTCCTTCCT 60.914 63.158 0.00 0.00 34.64 3.36
344 345 2.214920 ACGGACACACCCTCCTTCC 61.215 63.158 0.00 0.00 34.64 3.46
345 346 1.004918 CACGGACACACCCTCCTTC 60.005 63.158 0.00 0.00 34.64 3.46
346 347 1.764854 ACACGGACACACCCTCCTT 60.765 57.895 0.00 0.00 34.64 3.36
347 348 2.122989 ACACGGACACACCCTCCT 60.123 61.111 0.00 0.00 34.64 3.69
348 349 1.466025 TACACACGGACACACCCTCC 61.466 60.000 0.00 0.00 34.64 4.30
349 350 0.038526 CTACACACGGACACACCCTC 60.039 60.000 0.00 0.00 34.64 4.30
350 351 0.757935 ACTACACACGGACACACCCT 60.758 55.000 0.00 0.00 34.64 4.34
351 352 0.599204 CACTACACACGGACACACCC 60.599 60.000 0.00 0.00 34.64 4.61
352 353 0.599204 CCACTACACACGGACACACC 60.599 60.000 0.00 0.00 0.00 4.16
353 354 0.103572 ACCACTACACACGGACACAC 59.896 55.000 0.00 0.00 0.00 3.82
354 355 1.610038 CTACCACTACACACGGACACA 59.390 52.381 0.00 0.00 0.00 3.72
355 356 1.610522 ACTACCACTACACACGGACAC 59.389 52.381 0.00 0.00 0.00 3.67
356 357 1.985473 ACTACCACTACACACGGACA 58.015 50.000 0.00 0.00 0.00 4.02
357 358 3.375782 AAACTACCACTACACACGGAC 57.624 47.619 0.00 0.00 0.00 4.79
358 359 3.638160 AGAAAACTACCACTACACACGGA 59.362 43.478 0.00 0.00 0.00 4.69
359 360 3.985925 GAGAAAACTACCACTACACACGG 59.014 47.826 0.00 0.00 0.00 4.94
360 361 3.985925 GGAGAAAACTACCACTACACACG 59.014 47.826 0.00 0.00 0.00 4.49
361 362 5.211174 AGGAGAAAACTACCACTACACAC 57.789 43.478 0.00 0.00 0.00 3.82
362 363 5.601313 AGAAGGAGAAAACTACCACTACACA 59.399 40.000 0.00 0.00 0.00 3.72
363 364 6.099159 AGAAGGAGAAAACTACCACTACAC 57.901 41.667 0.00 0.00 0.00 2.90
364 365 6.742559 AAGAAGGAGAAAACTACCACTACA 57.257 37.500 0.00 0.00 0.00 2.74
365 366 7.932491 AGAAAAGAAGGAGAAAACTACCACTAC 59.068 37.037 0.00 0.00 0.00 2.73
366 367 8.030913 AGAAAAGAAGGAGAAAACTACCACTA 57.969 34.615 0.00 0.00 0.00 2.74
367 368 6.901300 AGAAAAGAAGGAGAAAACTACCACT 58.099 36.000 0.00 0.00 0.00 4.00
368 369 7.499563 AGAAGAAAAGAAGGAGAAAACTACCAC 59.500 37.037 0.00 0.00 0.00 4.16
369 370 7.574607 AGAAGAAAAGAAGGAGAAAACTACCA 58.425 34.615 0.00 0.00 0.00 3.25
370 371 7.173562 GGAGAAGAAAAGAAGGAGAAAACTACC 59.826 40.741 0.00 0.00 0.00 3.18
371 372 7.173562 GGGAGAAGAAAAGAAGGAGAAAACTAC 59.826 40.741 0.00 0.00 0.00 2.73
372 373 7.072581 AGGGAGAAGAAAAGAAGGAGAAAACTA 59.927 37.037 0.00 0.00 0.00 2.24
373 374 6.065374 GGGAGAAGAAAAGAAGGAGAAAACT 58.935 40.000 0.00 0.00 0.00 2.66
374 375 6.016693 CAGGGAGAAGAAAAGAAGGAGAAAAC 60.017 42.308 0.00 0.00 0.00 2.43
375 376 6.064717 CAGGGAGAAGAAAAGAAGGAGAAAA 58.935 40.000 0.00 0.00 0.00 2.29
376 377 5.625150 CAGGGAGAAGAAAAGAAGGAGAAA 58.375 41.667 0.00 0.00 0.00 2.52
377 378 4.505742 GCAGGGAGAAGAAAAGAAGGAGAA 60.506 45.833 0.00 0.00 0.00 2.87
378 379 3.008485 GCAGGGAGAAGAAAAGAAGGAGA 59.992 47.826 0.00 0.00 0.00 3.71
379 380 3.342719 GCAGGGAGAAGAAAAGAAGGAG 58.657 50.000 0.00 0.00 0.00 3.69
380 381 2.040412 GGCAGGGAGAAGAAAAGAAGGA 59.960 50.000 0.00 0.00 0.00 3.36
381 382 2.224867 TGGCAGGGAGAAGAAAAGAAGG 60.225 50.000 0.00 0.00 0.00 3.46
382 383 3.146104 TGGCAGGGAGAAGAAAAGAAG 57.854 47.619 0.00 0.00 0.00 2.85
383 384 3.593442 TTGGCAGGGAGAAGAAAAGAA 57.407 42.857 0.00 0.00 0.00 2.52
384 385 3.593442 TTTGGCAGGGAGAAGAAAAGA 57.407 42.857 0.00 0.00 0.00 2.52
385 386 5.982890 TTATTTGGCAGGGAGAAGAAAAG 57.017 39.130 0.00 0.00 0.00 2.27
386 387 5.279456 GCTTTATTTGGCAGGGAGAAGAAAA 60.279 40.000 0.00 0.00 0.00 2.29
387 388 4.220602 GCTTTATTTGGCAGGGAGAAGAAA 59.779 41.667 0.00 0.00 0.00 2.52
388 389 3.763897 GCTTTATTTGGCAGGGAGAAGAA 59.236 43.478 0.00 0.00 0.00 2.52
389 390 3.356290 GCTTTATTTGGCAGGGAGAAGA 58.644 45.455 0.00 0.00 0.00 2.87
390 391 2.098117 CGCTTTATTTGGCAGGGAGAAG 59.902 50.000 0.00 0.00 0.00 2.85
391 392 2.091541 CGCTTTATTTGGCAGGGAGAA 58.908 47.619 0.00 0.00 0.00 2.87
392 393 1.681780 CCGCTTTATTTGGCAGGGAGA 60.682 52.381 0.00 0.00 0.00 3.71
393 394 0.740737 CCGCTTTATTTGGCAGGGAG 59.259 55.000 0.00 0.00 0.00 4.30
394 395 2.880770 CCGCTTTATTTGGCAGGGA 58.119 52.632 0.00 0.00 0.00 4.20
399 400 2.582226 GCCGCCGCTTTATTTGGC 60.582 61.111 0.00 0.00 45.39 4.52
400 401 2.104132 GGCCGCCGCTTTATTTGG 59.896 61.111 0.00 0.00 34.44 3.28
401 402 1.226660 CTGGCCGCCGCTTTATTTG 60.227 57.895 4.58 0.00 34.44 2.32
402 403 0.751643 ATCTGGCCGCCGCTTTATTT 60.752 50.000 4.58 0.00 34.44 1.40
403 404 1.152963 ATCTGGCCGCCGCTTTATT 60.153 52.632 4.58 0.00 34.44 1.40
404 405 1.598130 GATCTGGCCGCCGCTTTAT 60.598 57.895 4.58 0.00 34.44 1.40
405 406 2.203015 GATCTGGCCGCCGCTTTA 60.203 61.111 4.58 0.00 34.44 1.85
414 415 1.298014 GATGGATCCGGATCTGGCC 59.702 63.158 36.72 24.83 37.92 5.36
415 416 1.298014 GGATGGATCCGGATCTGGC 59.702 63.158 36.72 26.02 37.19 4.85
424 425 0.682292 GGAAGAGACGGGATGGATCC 59.318 60.000 4.20 4.20 46.41 3.36
425 426 1.616374 GAGGAAGAGACGGGATGGATC 59.384 57.143 0.00 0.00 0.00 3.36
426 427 1.062886 TGAGGAAGAGACGGGATGGAT 60.063 52.381 0.00 0.00 0.00 3.41
427 428 0.335019 TGAGGAAGAGACGGGATGGA 59.665 55.000 0.00 0.00 0.00 3.41
428 429 1.195115 TTGAGGAAGAGACGGGATGG 58.805 55.000 0.00 0.00 0.00 3.51
429 430 3.550437 AATTGAGGAAGAGACGGGATG 57.450 47.619 0.00 0.00 0.00 3.51
430 431 4.576330 AAAATTGAGGAAGAGACGGGAT 57.424 40.909 0.00 0.00 0.00 3.85
431 432 5.396436 GGATAAAATTGAGGAAGAGACGGGA 60.396 44.000 0.00 0.00 0.00 5.14
432 433 4.816925 GGATAAAATTGAGGAAGAGACGGG 59.183 45.833 0.00 0.00 0.00 5.28
433 434 4.816925 GGGATAAAATTGAGGAAGAGACGG 59.183 45.833 0.00 0.00 0.00 4.79
434 435 4.816925 GGGGATAAAATTGAGGAAGAGACG 59.183 45.833 0.00 0.00 0.00 4.18
435 436 5.103898 AGGGGGATAAAATTGAGGAAGAGAC 60.104 44.000 0.00 0.00 0.00 3.36
436 437 5.046522 AGGGGGATAAAATTGAGGAAGAGA 58.953 41.667 0.00 0.00 0.00 3.10
437 438 5.133491 AGAGGGGGATAAAATTGAGGAAGAG 59.867 44.000 0.00 0.00 0.00 2.85
438 439 5.046522 AGAGGGGGATAAAATTGAGGAAGA 58.953 41.667 0.00 0.00 0.00 2.87
439 440 5.380900 GAGAGGGGGATAAAATTGAGGAAG 58.619 45.833 0.00 0.00 0.00 3.46
440 441 4.141482 CGAGAGGGGGATAAAATTGAGGAA 60.141 45.833 0.00 0.00 0.00 3.36
441 442 3.391296 CGAGAGGGGGATAAAATTGAGGA 59.609 47.826 0.00 0.00 0.00 3.71
442 443 3.136626 ACGAGAGGGGGATAAAATTGAGG 59.863 47.826 0.00 0.00 0.00 3.86
443 444 4.423625 ACGAGAGGGGGATAAAATTGAG 57.576 45.455 0.00 0.00 0.00 3.02
444 445 4.226394 TGAACGAGAGGGGGATAAAATTGA 59.774 41.667 0.00 0.00 0.00 2.57
445 446 4.335594 GTGAACGAGAGGGGGATAAAATTG 59.664 45.833 0.00 0.00 0.00 2.32
446 447 4.524053 GTGAACGAGAGGGGGATAAAATT 58.476 43.478 0.00 0.00 0.00 1.82
447 448 3.431766 CGTGAACGAGAGGGGGATAAAAT 60.432 47.826 0.00 0.00 43.02 1.82
448 449 2.093869 CGTGAACGAGAGGGGGATAAAA 60.094 50.000 0.00 0.00 43.02 1.52
449 450 1.479323 CGTGAACGAGAGGGGGATAAA 59.521 52.381 0.00 0.00 43.02 1.40
450 451 1.108776 CGTGAACGAGAGGGGGATAA 58.891 55.000 0.00 0.00 43.02 1.75
451 452 0.754217 CCGTGAACGAGAGGGGGATA 60.754 60.000 4.03 0.00 43.02 2.59
452 453 2.058595 CCGTGAACGAGAGGGGGAT 61.059 63.158 4.03 0.00 43.02 3.85
453 454 2.678934 CCGTGAACGAGAGGGGGA 60.679 66.667 4.03 0.00 43.02 4.81
454 455 2.995574 ACCGTGAACGAGAGGGGG 60.996 66.667 4.03 0.00 43.02 5.40
455 456 2.095978 AACACCGTGAACGAGAGGGG 62.096 60.000 5.28 0.00 43.02 4.79
456 457 0.944311 CAACACCGTGAACGAGAGGG 60.944 60.000 5.28 0.00 43.02 4.30
457 458 0.031585 TCAACACCGTGAACGAGAGG 59.968 55.000 5.28 0.00 43.02 3.69
458 459 1.847818 TTCAACACCGTGAACGAGAG 58.152 50.000 5.28 0.00 43.02 3.20
459 460 2.198406 CTTTCAACACCGTGAACGAGA 58.802 47.619 5.28 0.00 43.02 4.04
460 461 1.931172 ACTTTCAACACCGTGAACGAG 59.069 47.619 5.28 0.00 43.02 4.18
461 462 1.661617 CACTTTCAACACCGTGAACGA 59.338 47.619 5.28 0.00 43.02 3.85
462 463 1.267832 CCACTTTCAACACCGTGAACG 60.268 52.381 5.28 0.00 37.24 3.95
463 464 1.064952 CCCACTTTCAACACCGTGAAC 59.935 52.381 5.28 0.00 37.24 3.18
464 465 1.384525 CCCACTTTCAACACCGTGAA 58.615 50.000 5.28 0.00 35.72 3.18
465 466 0.464735 CCCCACTTTCAACACCGTGA 60.465 55.000 5.28 0.00 0.00 4.35
466 467 2.029743 CCCCACTTTCAACACCGTG 58.970 57.895 0.00 0.00 0.00 4.94
467 468 1.826487 GCCCCACTTTCAACACCGT 60.826 57.895 0.00 0.00 0.00 4.83
468 469 2.903547 CGCCCCACTTTCAACACCG 61.904 63.158 0.00 0.00 0.00 4.94
469 470 1.826487 ACGCCCCACTTTCAACACC 60.826 57.895 0.00 0.00 0.00 4.16
470 471 1.358759 CACGCCCCACTTTCAACAC 59.641 57.895 0.00 0.00 0.00 3.32
471 472 1.826054 CCACGCCCCACTTTCAACA 60.826 57.895 0.00 0.00 0.00 3.33
472 473 1.388837 AACCACGCCCCACTTTCAAC 61.389 55.000 0.00 0.00 0.00 3.18
473 474 1.076632 AACCACGCCCCACTTTCAA 60.077 52.632 0.00 0.00 0.00 2.69
474 475 1.527380 GAACCACGCCCCACTTTCA 60.527 57.895 0.00 0.00 0.00 2.69
475 476 2.265904 GGAACCACGCCCCACTTTC 61.266 63.158 0.00 0.00 0.00 2.62
476 477 1.420532 TAGGAACCACGCCCCACTTT 61.421 55.000 0.00 0.00 0.00 2.66
477 478 1.205460 ATAGGAACCACGCCCCACTT 61.205 55.000 0.00 0.00 0.00 3.16
478 479 1.615424 ATAGGAACCACGCCCCACT 60.615 57.895 0.00 0.00 0.00 4.00
479 480 1.451387 CATAGGAACCACGCCCCAC 60.451 63.158 0.00 0.00 0.00 4.61
480 481 2.675242 CCATAGGAACCACGCCCCA 61.675 63.158 0.00 0.00 0.00 4.96
481 482 2.192175 CCATAGGAACCACGCCCC 59.808 66.667 0.00 0.00 0.00 5.80
482 483 1.451387 CACCATAGGAACCACGCCC 60.451 63.158 0.00 0.00 0.00 6.13
483 484 1.451387 CCACCATAGGAACCACGCC 60.451 63.158 0.00 0.00 0.00 5.68
484 485 2.112815 GCCACCATAGGAACCACGC 61.113 63.158 0.00 0.00 0.00 5.34
485 486 1.024579 GTGCCACCATAGGAACCACG 61.025 60.000 0.00 0.00 30.25 4.94
486 487 2.868253 GTGCCACCATAGGAACCAC 58.132 57.895 0.00 0.00 30.25 4.16
489 490 0.322187 AACGGTGCCACCATAGGAAC 60.322 55.000 15.45 0.00 38.47 3.62
490 491 0.035820 GAACGGTGCCACCATAGGAA 60.036 55.000 15.45 0.00 38.47 3.36
491 492 1.600107 GAACGGTGCCACCATAGGA 59.400 57.895 15.45 0.00 38.47 2.94
492 493 1.813753 CGAACGGTGCCACCATAGG 60.814 63.158 15.45 0.00 38.47 2.57
493 494 1.079405 ACGAACGGTGCCACCATAG 60.079 57.895 15.45 5.00 38.47 2.23
494 495 1.374885 CACGAACGGTGCCACCATA 60.375 57.895 15.45 0.00 40.33 2.74
495 496 2.668212 CACGAACGGTGCCACCAT 60.668 61.111 15.45 1.11 40.33 3.55
503 504 0.458197 TTTGACACGACACGAACGGT 60.458 50.000 0.00 0.00 34.93 4.83
504 505 0.856641 ATTTGACACGACACGAACGG 59.143 50.000 0.00 0.00 34.93 4.44
505 506 1.519343 TCATTTGACACGACACGAACG 59.481 47.619 0.00 0.00 0.00 3.95
506 507 3.788434 ATCATTTGACACGACACGAAC 57.212 42.857 0.00 0.00 0.00 3.95
507 508 7.764695 ATAATATCATTTGACACGACACGAA 57.235 32.000 0.00 0.00 0.00 3.85
508 509 9.471084 AATATAATATCATTTGACACGACACGA 57.529 29.630 0.00 0.00 0.00 4.35
509 510 9.516091 CAATATAATATCATTTGACACGACACG 57.484 33.333 0.00 0.00 0.00 4.49
512 513 9.811655 CCACAATATAATATCATTTGACACGAC 57.188 33.333 0.00 0.00 0.00 4.34
513 514 8.998377 CCCACAATATAATATCATTTGACACGA 58.002 33.333 0.00 0.00 0.00 4.35
514 515 8.998377 TCCCACAATATAATATCATTTGACACG 58.002 33.333 0.00 0.00 0.00 4.49
527 528 8.116026 ACTGTTCTTTCCTTCCCACAATATAAT 58.884 33.333 0.00 0.00 0.00 1.28
671 680 9.920946 AAATGTAGGCTCTTATCCAATTTTCTA 57.079 29.630 0.00 0.00 0.00 2.10
993 1115 0.907704 ACCTGGTGCCCATCTTCGTA 60.908 55.000 0.00 0.00 30.82 3.43
1058 1186 2.621556 GAGGATCTCCCCTATCAGCT 57.378 55.000 0.00 0.00 36.49 4.24
1560 1692 3.306818 CTGCTGCTGCTTTTTCTTCTTC 58.693 45.455 17.00 0.00 40.48 2.87
1561 1693 2.545322 GCTGCTGCTGCTTTTTCTTCTT 60.545 45.455 22.10 0.00 40.48 2.52
1562 1694 1.000496 GCTGCTGCTGCTTTTTCTTCT 60.000 47.619 22.10 0.00 40.48 2.85
1591 1735 6.925610 TGTAATAACTTGTGCATCATCCTC 57.074 37.500 0.00 0.00 0.00 3.71
1596 1740 7.330262 TCTCAGATGTAATAACTTGTGCATCA 58.670 34.615 0.00 0.00 36.24 3.07
1646 1808 0.753848 CTCGTCCTCTTCCTCCTCCC 60.754 65.000 0.00 0.00 0.00 4.30
1662 1827 2.174969 CGTCTCCTCCTCGTCCTCG 61.175 68.421 0.00 0.00 38.55 4.63
1668 1833 1.525077 CCTCCTCGTCTCCTCCTCG 60.525 68.421 0.00 0.00 0.00 4.63
1689 1854 2.630889 TGATCTTCCTCACCTCCTGT 57.369 50.000 0.00 0.00 0.00 4.00
1844 2009 3.496875 CTCTCCGCCTCCATCGCTG 62.497 68.421 0.00 0.00 0.00 5.18
1845 2010 3.222855 CTCTCCGCCTCCATCGCT 61.223 66.667 0.00 0.00 0.00 4.93
1846 2011 4.292178 CCTCTCCGCCTCCATCGC 62.292 72.222 0.00 0.00 0.00 4.58
1847 2012 4.292178 GCCTCTCCGCCTCCATCG 62.292 72.222 0.00 0.00 0.00 3.84
1848 2013 3.157252 TGCCTCTCCGCCTCCATC 61.157 66.667 0.00 0.00 0.00 3.51
1849 2014 3.160047 CTGCCTCTCCGCCTCCAT 61.160 66.667 0.00 0.00 0.00 3.41
1857 2022 3.859414 ATCGCTGCCTGCCTCTCC 61.859 66.667 0.00 0.00 38.78 3.71
1858 2023 2.588314 CATCGCTGCCTGCCTCTC 60.588 66.667 0.00 0.00 38.78 3.20
1859 2024 4.172512 CCATCGCTGCCTGCCTCT 62.173 66.667 0.00 0.00 38.78 3.69
1860 2025 4.166888 TCCATCGCTGCCTGCCTC 62.167 66.667 0.00 0.00 38.78 4.70
1861 2026 4.172512 CTCCATCGCTGCCTGCCT 62.173 66.667 0.00 0.00 38.78 4.75
2228 2447 8.970859 ATGCAAATAGAGTTGAGTAATAAGCT 57.029 30.769 0.00 0.00 0.00 3.74
2349 2568 0.320073 GCATGCATGTGCCAACAACT 60.320 50.000 26.79 0.00 40.46 3.16
3078 3467 0.326595 TGACACCGGGTATGCAATGT 59.673 50.000 6.32 0.00 0.00 2.71
3151 3540 2.603953 GTCGCCACTTAGTCCAGTAAC 58.396 52.381 0.00 0.00 0.00 2.50
3370 3777 7.915293 TCATCGTTGTATTTAAATGGAGTGT 57.085 32.000 11.05 0.00 0.00 3.55
3567 3999 1.377202 TTGAATCTCACCGCTGGGC 60.377 57.895 0.00 0.00 36.48 5.36
3635 4067 2.233186 GCCTGGACCGTACTAGAAAGTT 59.767 50.000 0.00 0.00 37.15 2.66
4263 4957 7.828508 TTGACTGTCTCTTGTTACCTAGTAA 57.171 36.000 9.51 0.00 0.00 2.24
4273 5142 1.412710 TCGCCTTTGACTGTCTCTTGT 59.587 47.619 9.51 0.00 0.00 3.16
4294 5266 2.738314 GCATGAACATTTTGGGAAGCAC 59.262 45.455 0.00 0.00 0.00 4.40
4324 5371 5.957842 TGACCTTCGCAATCTGTTTAATT 57.042 34.783 0.00 0.00 0.00 1.40
4325 5372 5.957842 TTGACCTTCGCAATCTGTTTAAT 57.042 34.783 0.00 0.00 0.00 1.40
4326 5373 5.759506 TTTGACCTTCGCAATCTGTTTAA 57.240 34.783 0.00 0.00 0.00 1.52
4327 5374 5.957842 ATTTGACCTTCGCAATCTGTTTA 57.042 34.783 0.00 0.00 0.00 2.01
4351 5398 2.191128 AAGTACAGCTTCTTGCCCAG 57.809 50.000 0.00 0.00 44.23 4.45
4380 5427 1.683011 CGTCCATTTTGGGCTCCTGAT 60.683 52.381 0.00 0.00 40.79 2.90
4404 6572 1.809619 CGGGTACACACTGGATGCG 60.810 63.158 0.00 0.00 0.00 4.73
4405 6573 2.106683 GCGGGTACACACTGGATGC 61.107 63.158 0.00 0.00 0.00 3.91
4406 6574 0.740868 CTGCGGGTACACACTGGATG 60.741 60.000 0.00 0.00 0.00 3.51
4407 6575 1.596934 CTGCGGGTACACACTGGAT 59.403 57.895 0.00 0.00 0.00 3.41
4408 6576 2.579657 CCTGCGGGTACACACTGGA 61.580 63.158 2.29 0.00 0.00 3.86
4411 6579 0.830444 TCTTCCTGCGGGTACACACT 60.830 55.000 12.43 0.00 0.00 3.55
4414 6582 2.548067 CCATATCTTCCTGCGGGTACAC 60.548 54.545 12.43 0.00 0.00 2.90
4415 6583 1.691976 CCATATCTTCCTGCGGGTACA 59.308 52.381 12.43 0.00 0.00 2.90
4416 6584 1.968493 TCCATATCTTCCTGCGGGTAC 59.032 52.381 12.43 0.00 0.00 3.34
4417 6585 2.391926 TCCATATCTTCCTGCGGGTA 57.608 50.000 12.43 0.00 0.00 3.69
4418 6586 1.507140 TTCCATATCTTCCTGCGGGT 58.493 50.000 12.43 0.00 0.00 5.28
4419 6587 2.158755 AGTTTCCATATCTTCCTGCGGG 60.159 50.000 4.71 4.71 0.00 6.13
4420 6588 3.199880 AGTTTCCATATCTTCCTGCGG 57.800 47.619 0.00 0.00 0.00 5.69
4421 6589 6.049149 TCTTAAGTTTCCATATCTTCCTGCG 58.951 40.000 1.63 0.00 0.00 5.18
4422 6590 7.865706 TTCTTAAGTTTCCATATCTTCCTGC 57.134 36.000 1.63 0.00 0.00 4.85
4470 6638 4.568152 ACATTAAGTTGTTGGTGCACTC 57.432 40.909 17.98 7.60 0.00 3.51
4513 6681 9.991388 TTTGTGTAACTTGTGTTTGTTAGTATC 57.009 29.630 0.00 0.00 38.04 2.24
4572 6746 6.797033 GTGTGAATTGCTAACTTGTGTCATAC 59.203 38.462 0.00 0.00 0.00 2.39
4587 6761 4.241590 TCTTGTGATTGGTGTGAATTGC 57.758 40.909 0.00 0.00 0.00 3.56
4617 6791 5.270893 TCCGCAATTCATACTTGCTACTA 57.729 39.130 6.47 0.00 45.32 1.82
4630 6804 8.784043 AGGTCTACAATTTATATTCCGCAATTC 58.216 33.333 0.00 0.00 0.00 2.17
4682 6856 8.862325 TCTTGTTGTCCTCATTATATTGTGTT 57.138 30.769 0.00 0.00 0.00 3.32
4710 6884 2.094494 CACTTGACCTCGCAGTCACTAT 60.094 50.000 6.82 0.00 46.18 2.12
4739 6913 8.664669 AACCATATCTCCTTATTTGTGGTTTT 57.335 30.769 0.00 0.00 43.91 2.43
4742 6916 7.998964 CCTTAACCATATCTCCTTATTTGTGGT 59.001 37.037 0.00 0.00 40.21 4.16
4768 6942 5.805994 CCTTGTCTCCGTGACTTTAGTTATC 59.194 44.000 7.21 0.00 45.54 1.75
4789 6963 2.368875 GTGGACATCGGGATACATCCTT 59.631 50.000 8.14 0.00 46.35 3.36
4804 6978 0.104672 TCCCTCCAAGGAAGTGGACA 60.105 55.000 0.00 0.00 42.97 4.02
4826 7000 3.434167 CCCATCCCTCCAATGTTGACTAG 60.434 52.174 0.00 0.00 0.00 2.57
4829 7003 1.005924 ACCCATCCCTCCAATGTTGAC 59.994 52.381 0.00 0.00 0.00 3.18
4835 7009 1.569072 GGTAACACCCATCCCTCCAAT 59.431 52.381 0.00 0.00 30.04 3.16
4858 7032 2.577700 TCGTGGTGTTATTGTGCCTTT 58.422 42.857 0.00 0.00 0.00 3.11
4868 7042 1.493772 CGTGAGCTTTCGTGGTGTTA 58.506 50.000 0.00 0.00 0.00 2.41
4870 7044 4.027755 CGTGAGCTTTCGTGGTGT 57.972 55.556 0.00 0.00 0.00 4.16
4887 7061 3.873952 GGTGATATCTCAAGGACAACAGC 59.126 47.826 3.98 0.00 31.85 4.40
4888 7062 4.872691 GTGGTGATATCTCAAGGACAACAG 59.127 45.833 3.98 0.00 31.85 3.16
4893 7067 4.363999 CTTCGTGGTGATATCTCAAGGAC 58.636 47.826 3.98 0.00 31.85 3.85
4911 7085 0.721718 GTGGTTGAGAATCGCCTTCG 59.278 55.000 0.00 0.00 38.61 3.79
4938 7112 4.022603 CCATTCTCTCTCCTTCTGACTGA 58.977 47.826 0.00 0.00 0.00 3.41
4939 7113 4.022603 TCCATTCTCTCTCCTTCTGACTG 58.977 47.826 0.00 0.00 0.00 3.51
4940 7114 4.329638 TCCATTCTCTCTCCTTCTGACT 57.670 45.455 0.00 0.00 0.00 3.41
4957 7204 7.955185 AGAGATTCCACTAAGTGATAGATCCAT 59.045 37.037 0.00 0.00 35.23 3.41
4972 7219 4.837860 AGTGTTCTTGAGAGAGATTCCACT 59.162 41.667 0.00 0.00 32.44 4.00
5018 7265 3.149196 TCACTTTCTCCTGCACCAAATC 58.851 45.455 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.