Multiple sequence alignment - TraesCS2D01G580000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G580000 chr2D 100.000 6287 0 0 1 6287 642197033 642203319 0.000000e+00 11611
1 TraesCS2D01G580000 chr2D 83.568 925 141 7 1758 2678 598304099 598305016 0.000000e+00 856
2 TraesCS2D01G580000 chr2D 83.351 925 143 7 1758 2678 642059696 642060613 0.000000e+00 845
3 TraesCS2D01G580000 chr2D 82.976 934 115 18 1739 2662 597960645 597959746 0.000000e+00 804
4 TraesCS2D01G580000 chr2D 82.347 929 143 12 1758 2681 598278577 598277665 0.000000e+00 787
5 TraesCS2D01G580000 chr2D 81.681 928 151 12 1757 2679 598301575 598302488 0.000000e+00 754
6 TraesCS2D01G580000 chr2D 81.681 928 151 12 1757 2679 642057170 642058083 0.000000e+00 754
7 TraesCS2D01G580000 chr2D 84.058 621 72 18 4652 5270 598242641 598242046 1.970000e-159 573
8 TraesCS2D01G580000 chr2D 82.026 701 77 34 5494 6167 598241780 598241102 9.210000e-153 551
9 TraesCS2D01G580000 chr2D 86.709 158 13 5 5281 5436 598241942 598241791 1.080000e-37 169
10 TraesCS2D01G580000 chr2D 84.076 157 20 5 975 1127 598279338 598279183 5.080000e-31 147
11 TraesCS2D01G580000 chr2D 84.076 157 20 5 975 1127 642056402 642056557 5.080000e-31 147
12 TraesCS2D01G580000 chr2D 83.117 154 21 5 978 1127 642153196 642153044 1.100000e-27 135
13 TraesCS2D01G580000 chr2B 97.812 3794 73 4 1720 5509 799618802 799615015 0.000000e+00 6538
14 TraesCS2D01G580000 chr2B 97.447 1175 28 2 503 1676 799619981 799618808 0.000000e+00 2002
15 TraesCS2D01G580000 chr2B 96.215 502 9 6 14 507 799627423 799626924 0.000000e+00 813
16 TraesCS2D01G580000 chr2B 92.802 514 8 4 5614 6125 799615020 799614534 0.000000e+00 717
17 TraesCS2D01G580000 chr2B 83.387 313 27 17 5894 6192 799657700 799657399 3.740000e-67 267
18 TraesCS2D01G580000 chr2B 96.386 83 1 2 1683 1764 514348526 514348607 1.100000e-27 135
19 TraesCS2D01G580000 chr2B 95.238 84 1 2 1681 1762 514348607 514348525 5.110000e-26 130
20 TraesCS2D01G580000 chr2B 94.048 84 5 0 1679 1762 532093822 532093905 1.840000e-25 128
21 TraesCS2D01G580000 chr2A 96.325 3701 73 13 2609 6287 766915417 766919076 0.000000e+00 6023
22 TraesCS2D01G580000 chr2A 96.037 858 21 6 14 861 766898458 766899312 0.000000e+00 1384
23 TraesCS2D01G580000 chr2A 98.634 732 10 0 954 1685 766899312 766900043 0.000000e+00 1297
24 TraesCS2D01G580000 chr2A 83.983 924 137 9 1758 2678 767005895 767006810 0.000000e+00 876
25 TraesCS2D01G580000 chr2A 82.385 931 140 16 1757 2679 766970392 766971306 0.000000e+00 789
26 TraesCS2D01G580000 chr2A 98.843 432 4 1 1719 2150 766900043 766900473 0.000000e+00 769
27 TraesCS2D01G580000 chr2A 79.245 848 144 21 4301 5134 766881152 766881981 4.260000e-156 562
28 TraesCS2D01G580000 chr2A 79.088 746 92 27 5476 6192 766972618 766973328 7.430000e-124 455
29 TraesCS2D01G580000 chr2A 98.268 231 4 0 2146 2376 766909199 766909429 7.590000e-109 405
30 TraesCS2D01G580000 chr7A 87.530 417 45 7 2691 3106 165799527 165799937 5.700000e-130 475
31 TraesCS2D01G580000 chr7A 85.833 240 31 2 3401 3638 165802526 165802764 1.050000e-62 252
32 TraesCS2D01G580000 chr7D 87.624 404 45 5 2704 3106 164183842 164184241 1.230000e-126 464
33 TraesCS2D01G580000 chr7D 85.124 242 33 2 3399 3638 164186424 164186664 1.750000e-60 244
34 TraesCS2D01G580000 chr7B 87.624 404 45 5 2704 3106 126538842 126539241 1.230000e-126 464
35 TraesCS2D01G580000 chr7B 85.096 208 30 1 3431 3638 126541481 126541687 1.780000e-50 211
36 TraesCS2D01G580000 chr5A 96.386 83 1 1 1679 1759 638032986 638032904 1.100000e-27 135
37 TraesCS2D01G580000 chr5A 95.294 85 3 1 1676 1759 447370365 447370449 3.950000e-27 134
38 TraesCS2D01G580000 chr3B 92.391 92 5 2 1677 1767 114200723 114200813 5.110000e-26 130
39 TraesCS2D01G580000 chr1B 94.186 86 2 2 1684 1768 611409527 611409444 1.840000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G580000 chr2D 642197033 642203319 6286 False 11611.000000 11611 100.000000 1 6287 1 chr2D.!!$F1 6286
1 TraesCS2D01G580000 chr2D 598301575 598305016 3441 False 805.000000 856 82.624500 1757 2679 2 chr2D.!!$F2 922
2 TraesCS2D01G580000 chr2D 597959746 597960645 899 True 804.000000 804 82.976000 1739 2662 1 chr2D.!!$R1 923
3 TraesCS2D01G580000 chr2D 642056402 642060613 4211 False 582.000000 845 83.036000 975 2679 3 chr2D.!!$F3 1704
4 TraesCS2D01G580000 chr2D 598277665 598279338 1673 True 467.000000 787 83.211500 975 2681 2 chr2D.!!$R4 1706
5 TraesCS2D01G580000 chr2D 598241102 598242641 1539 True 431.000000 573 84.264333 4652 6167 3 chr2D.!!$R3 1515
6 TraesCS2D01G580000 chr2B 799614534 799619981 5447 True 3085.666667 6538 96.020333 503 6125 3 chr2B.!!$R4 5622
7 TraesCS2D01G580000 chr2A 766915417 766919076 3659 False 6023.000000 6023 96.325000 2609 6287 1 chr2A.!!$F3 3678
8 TraesCS2D01G580000 chr2A 766898458 766900473 2015 False 1150.000000 1384 97.838000 14 2150 3 chr2A.!!$F5 2136
9 TraesCS2D01G580000 chr2A 767005895 767006810 915 False 876.000000 876 83.983000 1758 2678 1 chr2A.!!$F4 920
10 TraesCS2D01G580000 chr2A 766970392 766973328 2936 False 622.000000 789 80.736500 1757 6192 2 chr2A.!!$F6 4435
11 TraesCS2D01G580000 chr2A 766881152 766881981 829 False 562.000000 562 79.245000 4301 5134 1 chr2A.!!$F1 833
12 TraesCS2D01G580000 chr7A 165799527 165802764 3237 False 363.500000 475 86.681500 2691 3638 2 chr7A.!!$F1 947
13 TraesCS2D01G580000 chr7D 164183842 164186664 2822 False 354.000000 464 86.374000 2704 3638 2 chr7D.!!$F1 934
14 TraesCS2D01G580000 chr7B 126538842 126541687 2845 False 337.500000 464 86.360000 2704 3638 2 chr7B.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 444 1.470112 CCAAACCCAACACAACGTTCC 60.470 52.381 0.00 0.00 34.86 3.62 F
1632 4379 0.258774 TATGCCCAAGGGAAGCCTTC 59.741 55.000 9.92 0.00 37.50 3.46 F
1760 4507 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73 F
3143 6052 1.599071 ACACATGTTGTCTTGTCGCTG 59.401 47.619 0.00 0.00 29.79 5.18 F
3705 8829 2.410469 GACGCAATGCATCCCAGC 59.590 61.111 5.91 1.28 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 4400 0.179018 ACTTGAAGTGAAGCGGCCTT 60.179 50.000 0.00 0.0 0.00 4.35 R
2777 5571 1.176527 CCCGTGATGAAGCCAATTGT 58.823 50.000 4.43 0.0 0.00 2.71 R
3745 8869 4.389687 GTGATGTTGAAAATCCAATGGCAC 59.610 41.667 0.00 0.0 0.00 5.01 R
4591 9721 0.627451 AAGATTGGGCTGCATCCAGA 59.373 50.000 9.17 0.0 41.77 3.86 R
5562 11492 1.449601 CCGGCTGGTGTCATGGTAC 60.450 63.158 2.29 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.606961 CTCAGCTAAGCTAAGCAGAGTAC 58.393 47.826 9.37 0.00 45.81 2.73
40 41 6.484308 AGCTAAGCTAAGCAGAGTACTACTAC 59.516 42.308 0.00 0.00 45.30 2.73
41 42 6.484308 GCTAAGCTAAGCAGAGTACTACTACT 59.516 42.308 0.00 0.00 42.30 2.57
44 53 6.181908 AGCTAAGCAGAGTACTACTACTTGT 58.818 40.000 13.66 0.00 32.96 3.16
61 70 4.648651 ACTTGTACCCATTACTTGACACC 58.351 43.478 0.00 0.00 0.00 4.16
75 84 9.823647 ATTACTTGACACCTGATTAGATGTAAG 57.176 33.333 0.00 0.00 0.00 2.34
82 91 9.685828 GACACCTGATTAGATGTAAGTAATCTC 57.314 37.037 0.00 0.00 36.83 2.75
115 124 9.678941 GTTAGAAATGCACTTAAAAGTTTAGCT 57.321 29.630 0.00 0.00 37.08 3.32
119 128 8.520835 AAATGCACTTAAAAGTTTAGCTAAGC 57.479 30.769 12.03 12.03 37.08 3.09
191 201 7.613022 AGATGAGACCATATTTGATGTTTGTGT 59.387 33.333 0.00 0.00 32.09 3.72
218 228 2.455674 TGCTCTTATGCAACTCGTGT 57.544 45.000 0.00 0.00 40.29 4.49
261 271 2.434702 GGAATGAGATTAGGTGGACCGT 59.565 50.000 0.00 0.00 42.08 4.83
262 272 3.640029 GGAATGAGATTAGGTGGACCGTA 59.360 47.826 0.00 0.00 42.08 4.02
277 287 5.290400 GTGGACCGTAATAAGCTGTAGTTTC 59.710 44.000 0.00 0.00 0.00 2.78
318 328 8.691661 ATGAAAGGTACAACTAAGTTCACATT 57.308 30.769 0.00 0.00 0.00 2.71
323 333 7.280356 AGGTACAACTAAGTTCACATTCAACT 58.720 34.615 0.00 0.00 35.51 3.16
394 404 2.572284 GGGGTGTCCTCTTCGTCG 59.428 66.667 0.00 0.00 0.00 5.12
434 444 1.470112 CCAAACCCAACACAACGTTCC 60.470 52.381 0.00 0.00 34.86 3.62
565 576 2.290514 ACTGATCATGTGTCTGGTTGGG 60.291 50.000 0.00 0.00 0.00 4.12
969 981 8.091449 AGTATGTTCTAGATTTATACCAGCAGC 58.909 37.037 13.59 0.00 0.00 5.25
1190 3937 6.969043 TCAAATTGGTGATCCTATGGTTACT 58.031 36.000 0.00 0.00 34.23 2.24
1398 4145 4.833938 TGAGTATGTAGGGTGTGTACAACA 59.166 41.667 0.00 0.00 34.61 3.33
1582 4329 3.297134 AGGGAGAACTGTTTTTGCTGA 57.703 42.857 0.00 0.00 0.00 4.26
1583 4330 3.217626 AGGGAGAACTGTTTTTGCTGAG 58.782 45.455 0.00 0.00 0.00 3.35
1584 4331 3.117888 AGGGAGAACTGTTTTTGCTGAGA 60.118 43.478 0.00 0.00 0.00 3.27
1585 4332 3.003793 GGGAGAACTGTTTTTGCTGAGAC 59.996 47.826 0.00 0.00 0.00 3.36
1586 4333 3.627577 GGAGAACTGTTTTTGCTGAGACA 59.372 43.478 0.00 0.00 0.00 3.41
1587 4334 4.096382 GGAGAACTGTTTTTGCTGAGACAA 59.904 41.667 0.00 0.00 0.00 3.18
1588 4335 4.986622 AGAACTGTTTTTGCTGAGACAAC 58.013 39.130 0.00 0.00 0.00 3.32
1589 4336 4.458989 AGAACTGTTTTTGCTGAGACAACA 59.541 37.500 0.00 0.00 0.00 3.33
1590 4337 4.989279 ACTGTTTTTGCTGAGACAACAT 57.011 36.364 0.00 0.00 0.00 2.71
1591 4338 6.318648 AGAACTGTTTTTGCTGAGACAACATA 59.681 34.615 0.00 0.00 0.00 2.29
1594 4341 8.165239 ACTGTTTTTGCTGAGACAACATATAA 57.835 30.769 0.00 0.00 0.00 0.98
1595 4342 8.629158 ACTGTTTTTGCTGAGACAACATATAAA 58.371 29.630 0.00 0.00 0.00 1.40
1598 4345 6.816134 TTTGCTGAGACAACATATAAAGCA 57.184 33.333 0.00 0.00 37.62 3.91
1599 4346 5.801350 TGCTGAGACAACATATAAAGCAC 57.199 39.130 0.00 0.00 34.68 4.40
1601 4348 5.939883 TGCTGAGACAACATATAAAGCACTT 59.060 36.000 0.00 0.00 34.68 3.16
1602 4349 6.430925 TGCTGAGACAACATATAAAGCACTTT 59.569 34.615 0.70 0.70 34.68 2.66
1603 4350 6.744537 GCTGAGACAACATATAAAGCACTTTG 59.255 38.462 5.89 0.00 34.23 2.77
1604 4351 6.611381 TGAGACAACATATAAAGCACTTTGC 58.389 36.000 5.89 0.00 45.46 3.68
1618 4365 4.354587 GCACTTTGCTTTGAGTATATGCC 58.645 43.478 0.00 0.00 40.96 4.40
1619 4366 4.734695 GCACTTTGCTTTGAGTATATGCCC 60.735 45.833 0.00 0.00 40.96 5.36
1620 4367 4.398988 CACTTTGCTTTGAGTATATGCCCA 59.601 41.667 0.00 0.00 0.00 5.36
1623 4370 3.554934 TGCTTTGAGTATATGCCCAAGG 58.445 45.455 0.00 0.00 0.00 3.61
1624 4371 2.887152 GCTTTGAGTATATGCCCAAGGG 59.113 50.000 0.00 0.00 38.57 3.95
1625 4372 3.435026 GCTTTGAGTATATGCCCAAGGGA 60.435 47.826 9.92 0.00 37.50 4.20
1627 4374 4.437682 TTGAGTATATGCCCAAGGGAAG 57.562 45.455 9.92 0.00 37.50 3.46
1629 4376 1.425448 AGTATATGCCCAAGGGAAGCC 59.575 52.381 9.92 0.00 37.50 4.35
1630 4377 1.425448 GTATATGCCCAAGGGAAGCCT 59.575 52.381 9.92 0.00 37.50 4.58
1631 4378 0.936691 ATATGCCCAAGGGAAGCCTT 59.063 50.000 9.92 0.00 37.50 4.35
1632 4379 0.258774 TATGCCCAAGGGAAGCCTTC 59.741 55.000 9.92 0.00 37.50 3.46
1635 4382 0.831711 GCCCAAGGGAAGCCTTCAAA 60.832 55.000 9.92 0.00 37.50 2.69
1637 4384 1.344438 CCCAAGGGAAGCCTTCAAAAC 59.656 52.381 6.80 0.00 37.50 2.43
1638 4385 1.344438 CCAAGGGAAGCCTTCAAAACC 59.656 52.381 6.80 0.00 0.00 3.27
1639 4386 2.038659 CAAGGGAAGCCTTCAAAACCA 58.961 47.619 6.80 0.00 0.00 3.67
1640 4387 2.634453 CAAGGGAAGCCTTCAAAACCAT 59.366 45.455 6.80 0.00 0.00 3.55
1643 4390 3.333680 AGGGAAGCCTTCAAAACCATCTA 59.666 43.478 6.80 0.00 0.00 1.98
1645 4392 4.339530 GGGAAGCCTTCAAAACCATCTATC 59.660 45.833 6.80 0.00 0.00 2.08
1646 4393 5.196695 GGAAGCCTTCAAAACCATCTATCT 58.803 41.667 6.80 0.00 0.00 1.98
1648 4395 4.530875 AGCCTTCAAAACCATCTATCTGG 58.469 43.478 0.00 0.00 42.35 3.86
1659 4406 4.759782 CCATCTATCTGGTAATAAGGCCG 58.240 47.826 0.00 0.00 0.00 6.13
1661 4408 3.507411 TCTATCTGGTAATAAGGCCGCT 58.493 45.455 0.00 0.00 0.00 5.52
1662 4409 3.901844 TCTATCTGGTAATAAGGCCGCTT 59.098 43.478 0.00 0.00 0.00 4.68
1663 4410 2.614829 TCTGGTAATAAGGCCGCTTC 57.385 50.000 0.00 0.00 0.00 3.86
1664 4411 1.834896 TCTGGTAATAAGGCCGCTTCA 59.165 47.619 0.00 0.00 0.00 3.02
1666 4413 1.557832 TGGTAATAAGGCCGCTTCACT 59.442 47.619 0.00 0.00 0.00 3.41
1667 4414 2.026636 TGGTAATAAGGCCGCTTCACTT 60.027 45.455 0.00 0.00 0.00 3.16
1668 4415 2.612672 GGTAATAAGGCCGCTTCACTTC 59.387 50.000 0.00 0.00 0.00 3.01
1669 4416 2.489938 AATAAGGCCGCTTCACTTCA 57.510 45.000 0.00 0.00 0.00 3.02
1670 4417 2.489938 ATAAGGCCGCTTCACTTCAA 57.510 45.000 0.00 0.00 0.00 2.69
1672 4419 0.179018 AAGGCCGCTTCACTTCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
1673 4420 0.685097 AGGCCGCTTCACTTCAAGTA 59.315 50.000 0.00 0.00 0.00 2.24
1675 4422 2.500098 AGGCCGCTTCACTTCAAGTATA 59.500 45.455 0.00 0.00 0.00 1.47
1676 4423 2.608090 GGCCGCTTCACTTCAAGTATAC 59.392 50.000 0.00 0.00 0.00 1.47
1677 4424 3.522553 GCCGCTTCACTTCAAGTATACT 58.477 45.455 0.00 0.00 0.00 2.12
1678 4425 4.441079 GGCCGCTTCACTTCAAGTATACTA 60.441 45.833 5.65 0.00 0.00 1.82
1683 4430 9.776158 CCGCTTCACTTCAAGTATACTATATAG 57.224 37.037 5.65 8.27 0.00 1.31
1694 4441 9.545105 CAAGTATACTATATAGTACTCCCTCCG 57.455 40.741 22.07 8.76 41.18 4.63
1695 4442 8.852671 AGTATACTATATAGTACTCCCTCCGT 57.147 38.462 22.07 8.07 41.18 4.69
1698 4445 3.735720 ATATAGTACTCCCTCCGTCCC 57.264 52.381 0.00 0.00 0.00 4.46
1699 4446 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1700 4447 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1703 4450 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1705 4452 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1706 4453 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1707 4454 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1708 4455 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1709 4456 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
1710 4457 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
1712 4459 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
1713 4460 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
1714 4461 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1715 4462 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1716 4463 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1718 4465 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1719 4466 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1722 4469 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1723 4470 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1738 4485 8.788325 AACTTTGTACTAAAGTTGAGTCACTT 57.212 30.769 23.48 0.00 45.58 3.16
1746 4493 8.166422 ACTAAAGTTGAGTCACTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
1747 4494 7.996644 ACTAAAGTTGAGTCACTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
1748 4495 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1749 4496 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
1751 4498 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
1754 4501 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
1755 4502 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1756 4503 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1757 4504 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
1758 4505 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1759 4506 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1760 4507 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
2369 5160 2.099141 TTCTGGTGTGCTCTACATGC 57.901 50.000 0.00 0.00 42.24 4.06
2865 5659 4.079253 GTCAAAGGATGAGCCCACTAAAA 58.921 43.478 0.00 0.00 39.19 1.52
2983 5777 8.642885 CGTTCTAGATATGTCAACATATGAAGC 58.357 37.037 17.98 6.06 46.36 3.86
3018 5812 2.114616 CAGTCTCTGCCCTATCAGGTT 58.885 52.381 0.00 0.00 34.91 3.50
3143 6052 1.599071 ACACATGTTGTCTTGTCGCTG 59.401 47.619 0.00 0.00 29.79 5.18
3212 6151 7.584987 TGCTAAAAAGTTCTGCTATCAAACTC 58.415 34.615 0.00 0.00 32.24 3.01
3311 7293 5.759506 TTGATAACCGTTGTGTGACAATT 57.240 34.783 0.00 0.00 40.59 2.32
3449 8573 6.861065 TCACTTTATCGAGCTTGACTTTTT 57.139 33.333 5.59 0.00 0.00 1.94
3705 8829 2.410469 GACGCAATGCATCCCAGC 59.590 61.111 5.91 1.28 0.00 4.85
4004 9128 3.000724 GCAGTACTCGATTCATGCTTCAC 59.999 47.826 0.00 0.00 0.00 3.18
4591 9721 2.580601 CCGGACTTCAACGGGGAGT 61.581 63.158 0.00 0.00 46.08 3.85
4602 9732 2.191641 GGGGAGTCTGGATGCAGC 59.808 66.667 9.76 4.98 0.00 5.25
4979 10113 5.826208 TCTAGTGCTAGACCGTGATGAAATA 59.174 40.000 4.93 0.00 37.28 1.40
5058 10200 4.580167 TGTAATCCTAATTGCCATCACAGC 59.420 41.667 0.00 0.00 0.00 4.40
5300 10557 4.626287 GCACATCTAAAATGGGAGAGTGGA 60.626 45.833 0.00 0.00 0.00 4.02
5547 11477 9.241317 GATTGTCAATTCAATTCATGTACATCC 57.759 33.333 5.07 0.00 38.03 3.51
5562 11492 6.540438 TGTACATCCCTAAGAACTTACCAG 57.460 41.667 0.00 0.00 0.00 4.00
5563 11493 6.021030 TGTACATCCCTAAGAACTTACCAGT 58.979 40.000 0.00 0.00 33.11 4.00
5759 11712 5.469084 AGACTCCCAGTTTTTGAAATCGTAC 59.531 40.000 0.00 0.00 0.00 3.67
5806 11759 3.350833 GCCAGTGGAGAATTGACTTCAT 58.649 45.455 15.20 0.00 36.24 2.57
5879 11855 6.041423 TGAGCATCAAGACAGAGTATTGAA 57.959 37.500 10.70 0.00 45.97 2.69
5880 11856 6.104665 TGAGCATCAAGACAGAGTATTGAAG 58.895 40.000 10.70 8.04 45.97 3.02
5881 11857 5.154215 GCATCAAGACAGAGTATTGAAGC 57.846 43.478 15.63 15.63 45.74 3.86
5882 11858 4.034975 GCATCAAGACAGAGTATTGAAGCC 59.965 45.833 18.37 6.15 45.94 4.35
5883 11859 4.890158 TCAAGACAGAGTATTGAAGCCA 57.110 40.909 4.88 0.00 40.14 4.75
5884 11860 4.569943 TCAAGACAGAGTATTGAAGCCAC 58.430 43.478 4.88 0.00 40.14 5.01
5885 11861 3.238108 AGACAGAGTATTGAAGCCACG 57.762 47.619 0.00 0.00 0.00 4.94
5886 11862 2.563179 AGACAGAGTATTGAAGCCACGT 59.437 45.455 0.00 0.00 0.00 4.49
5887 11863 2.924290 GACAGAGTATTGAAGCCACGTC 59.076 50.000 0.00 0.00 0.00 4.34
5888 11864 2.563179 ACAGAGTATTGAAGCCACGTCT 59.437 45.455 0.00 0.00 0.00 4.18
5889 11865 3.006967 ACAGAGTATTGAAGCCACGTCTT 59.993 43.478 0.00 0.00 0.00 3.01
5890 11866 3.369147 CAGAGTATTGAAGCCACGTCTTG 59.631 47.826 0.00 0.00 0.00 3.02
5891 11867 3.258372 AGAGTATTGAAGCCACGTCTTGA 59.742 43.478 0.00 0.00 0.00 3.02
6140 12135 6.884280 AGCTGGAATTAAATGTACTATGGC 57.116 37.500 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.099266 AGCTTAGCTGAGTGATTAGAGTGG 59.901 45.833 5.70 0.00 37.57 4.00
1 2 5.261209 AGCTTAGCTGAGTGATTAGAGTG 57.739 43.478 5.70 0.00 37.57 3.51
4 5 5.360999 TGCTTAGCTTAGCTGAGTGATTAGA 59.639 40.000 23.89 0.00 42.97 2.10
5 6 5.595885 TGCTTAGCTTAGCTGAGTGATTAG 58.404 41.667 23.89 1.93 42.97 1.73
6 7 5.360999 TCTGCTTAGCTTAGCTGAGTGATTA 59.639 40.000 24.72 6.53 42.97 1.75
7 8 4.161189 TCTGCTTAGCTTAGCTGAGTGATT 59.839 41.667 24.72 0.00 42.97 2.57
8 9 3.703556 TCTGCTTAGCTTAGCTGAGTGAT 59.296 43.478 24.72 0.00 42.97 3.06
10 11 3.516981 TCTGCTTAGCTTAGCTGAGTG 57.483 47.619 24.72 17.35 42.97 3.51
34 35 7.758528 GTGTCAAGTAATGGGTACAAGTAGTAG 59.241 40.741 0.00 0.00 34.88 2.57
40 41 4.695455 CAGGTGTCAAGTAATGGGTACAAG 59.305 45.833 0.00 0.00 34.88 3.16
41 42 4.348461 TCAGGTGTCAAGTAATGGGTACAA 59.652 41.667 0.00 0.00 34.88 2.41
44 53 5.772393 AATCAGGTGTCAAGTAATGGGTA 57.228 39.130 0.00 0.00 0.00 3.69
61 70 9.190858 GCACAGAGATTACTTACATCTAATCAG 57.809 37.037 0.00 0.00 33.47 2.90
75 84 5.502544 GCATTTCTAACGGCACAGAGATTAC 60.503 44.000 0.00 0.00 0.00 1.89
115 124 7.176165 TGAACTGTAACTACTCTGCTTAGCTTA 59.824 37.037 5.60 0.00 0.00 3.09
119 128 6.094061 GGTGAACTGTAACTACTCTGCTTAG 58.906 44.000 0.00 0.00 0.00 2.18
218 228 5.244402 TCCGAAGAGTGGTATACAAACAAGA 59.756 40.000 5.01 0.00 0.00 3.02
261 271 7.158697 TGCTTGACTGAAACTACAGCTTATTA 58.841 34.615 0.00 0.00 41.06 0.98
262 272 5.997746 TGCTTGACTGAAACTACAGCTTATT 59.002 36.000 0.00 0.00 41.06 1.40
277 287 5.471456 ACCTTTCATTTCTACTGCTTGACTG 59.529 40.000 0.00 0.00 0.00 3.51
318 328 4.777366 TGTGGGAGAGACATATGAAGTTGA 59.223 41.667 10.38 0.00 0.00 3.18
323 333 5.698741 AATGTGTGGGAGAGACATATGAA 57.301 39.130 10.38 0.00 37.58 2.57
388 398 1.209383 CGAGAAGACCAGCGACGAA 59.791 57.895 0.00 0.00 0.00 3.85
394 404 2.507324 GGCGACGAGAAGACCAGC 60.507 66.667 0.00 0.00 0.00 4.85
434 444 5.766150 TGTTCAGTGTTTTATGAGGGTTG 57.234 39.130 0.00 0.00 0.00 3.77
480 491 6.237942 CCACGTGATCAGTCAGTTCAATATTC 60.238 42.308 19.30 0.00 34.36 1.75
565 576 1.007336 GTCGTCGGTGTGTGATGGAC 61.007 60.000 0.00 0.00 0.00 4.02
969 981 0.037232 GTGACCTTTCCCCAGAGTCG 60.037 60.000 0.00 0.00 0.00 4.18
1190 3937 6.369629 TGTTTGAAGTAAAAAGGGATGGAGA 58.630 36.000 0.00 0.00 0.00 3.71
1398 4145 2.146342 CACAGCAATCTCTTGTCCGTT 58.854 47.619 0.00 0.00 34.69 4.44
1598 4345 4.599041 TGGGCATATACTCAAAGCAAAGT 58.401 39.130 0.00 0.00 0.00 2.66
1599 4346 5.450965 CCTTGGGCATATACTCAAAGCAAAG 60.451 44.000 0.00 0.00 0.00 2.77
1601 4348 3.953612 CCTTGGGCATATACTCAAAGCAA 59.046 43.478 0.00 0.00 0.00 3.91
1602 4349 3.554934 CCTTGGGCATATACTCAAAGCA 58.445 45.455 0.00 0.00 0.00 3.91
1603 4350 2.887152 CCCTTGGGCATATACTCAAAGC 59.113 50.000 0.00 0.00 0.00 3.51
1604 4351 4.437682 TCCCTTGGGCATATACTCAAAG 57.562 45.455 0.00 0.00 0.00 2.77
1605 4352 4.792068 CTTCCCTTGGGCATATACTCAAA 58.208 43.478 0.00 0.00 0.00 2.69
1606 4353 3.435026 GCTTCCCTTGGGCATATACTCAA 60.435 47.826 0.00 0.00 0.00 3.02
1607 4354 2.106511 GCTTCCCTTGGGCATATACTCA 59.893 50.000 0.00 0.00 0.00 3.41
1608 4355 2.553247 GGCTTCCCTTGGGCATATACTC 60.553 54.545 0.00 0.00 0.00 2.59
1610 4357 1.425448 AGGCTTCCCTTGGGCATATAC 59.575 52.381 0.00 0.00 38.74 1.47
1611 4358 1.833187 AGGCTTCCCTTGGGCATATA 58.167 50.000 0.00 0.00 38.74 0.86
1612 4359 2.650764 AGGCTTCCCTTGGGCATAT 58.349 52.632 0.00 0.00 38.74 1.78
1613 4360 4.186911 AGGCTTCCCTTGGGCATA 57.813 55.556 0.00 0.00 38.74 3.14
1623 4370 5.067023 CAGATAGATGGTTTTGAAGGCTTCC 59.933 44.000 23.68 9.75 0.00 3.46
1624 4371 5.067023 CCAGATAGATGGTTTTGAAGGCTTC 59.933 44.000 20.27 20.27 35.47 3.86
1625 4372 4.952335 CCAGATAGATGGTTTTGAAGGCTT 59.048 41.667 0.00 0.00 35.47 4.35
1627 4374 4.907879 CCAGATAGATGGTTTTGAAGGC 57.092 45.455 0.00 0.00 35.47 4.35
1637 4384 4.759782 CGGCCTTATTACCAGATAGATGG 58.240 47.826 0.00 0.00 46.47 3.51
1638 4385 4.081420 AGCGGCCTTATTACCAGATAGATG 60.081 45.833 0.00 0.00 0.00 2.90
1639 4386 4.097418 AGCGGCCTTATTACCAGATAGAT 58.903 43.478 0.00 0.00 0.00 1.98
1640 4387 3.507411 AGCGGCCTTATTACCAGATAGA 58.493 45.455 0.00 0.00 0.00 1.98
1643 4390 2.438021 TGAAGCGGCCTTATTACCAGAT 59.562 45.455 0.00 0.00 0.00 2.90
1645 4392 1.940613 GTGAAGCGGCCTTATTACCAG 59.059 52.381 0.00 0.00 0.00 4.00
1646 4393 1.557832 AGTGAAGCGGCCTTATTACCA 59.442 47.619 0.00 0.00 0.00 3.25
1648 4395 3.267483 TGAAGTGAAGCGGCCTTATTAC 58.733 45.455 0.00 0.00 0.00 1.89
1649 4396 3.620427 TGAAGTGAAGCGGCCTTATTA 57.380 42.857 0.00 0.00 0.00 0.98
1652 4399 1.071699 ACTTGAAGTGAAGCGGCCTTA 59.928 47.619 0.00 0.00 0.00 2.69
1653 4400 0.179018 ACTTGAAGTGAAGCGGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
1655 4402 1.739067 ATACTTGAAGTGAAGCGGCC 58.261 50.000 8.33 0.00 0.00 6.13
1657 4404 9.776158 CTATATAGTATACTTGAAGTGAAGCGG 57.224 37.037 11.40 0.00 0.00 5.52
1668 4415 9.545105 CGGAGGGAGTACTATATAGTATACTTG 57.455 40.741 22.39 12.13 40.55 3.16
1669 4416 9.278011 ACGGAGGGAGTACTATATAGTATACTT 57.722 37.037 22.39 13.34 40.55 2.24
1670 4417 8.852671 ACGGAGGGAGTACTATATAGTATACT 57.147 38.462 22.39 18.70 40.55 2.12
1672 4419 7.291182 GGGACGGAGGGAGTACTATATAGTATA 59.709 44.444 22.39 3.78 40.55 1.47
1673 4420 6.101005 GGGACGGAGGGAGTACTATATAGTAT 59.899 46.154 22.39 13.07 40.55 2.12
1675 4422 4.227073 GGGACGGAGGGAGTACTATATAGT 59.773 50.000 19.07 19.07 40.24 2.12
1676 4423 4.226846 TGGGACGGAGGGAGTACTATATAG 59.773 50.000 8.27 8.27 0.00 1.31
1677 4424 4.178339 TGGGACGGAGGGAGTACTATATA 58.822 47.826 0.00 0.00 0.00 0.86
1678 4425 2.991713 TGGGACGGAGGGAGTACTATAT 59.008 50.000 0.00 0.00 0.00 0.86
1683 4430 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1684 4431 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1689 4436 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1690 4437 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
1691 4438 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
1692 4439 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
1693 4440 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
1694 4441 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1695 4442 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
1703 4450 9.880157 AACTTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 23.48 0.00 45.58 2.24
1722 4469 8.290325 GTCCCAAAATAAGTGACTCAACTTTAG 58.710 37.037 0.00 0.00 40.77 1.85
1723 4470 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
1724 4471 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1725 4472 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1726 4473 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1727 4474 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1729 4476 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
1730 4477 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
1731 4478 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
1732 4479 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
1733 4480 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
1734 4481 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1735 4482 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1736 4483 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1738 4485 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1743 4490 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1744 4491 2.378378 ATAAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1745 4492 4.261952 GCTTAATAAGTACTCCCTCCGTCC 60.262 50.000 0.00 0.00 0.00 4.79
1746 4493 4.340381 TGCTTAATAAGTACTCCCTCCGTC 59.660 45.833 0.00 0.00 0.00 4.79
1747 4494 4.284178 TGCTTAATAAGTACTCCCTCCGT 58.716 43.478 0.00 0.00 0.00 4.69
1748 4495 4.931661 TGCTTAATAAGTACTCCCTCCG 57.068 45.455 0.00 0.00 0.00 4.63
1749 4496 4.998033 GCATGCTTAATAAGTACTCCCTCC 59.002 45.833 11.37 0.00 0.00 4.30
1751 4498 4.344102 TCGCATGCTTAATAAGTACTCCCT 59.656 41.667 17.13 0.00 0.00 4.20
1754 4501 7.464830 TTCTTCGCATGCTTAATAAGTACTC 57.535 36.000 17.13 0.00 0.00 2.59
1755 4502 7.843490 TTTCTTCGCATGCTTAATAAGTACT 57.157 32.000 17.13 0.00 0.00 2.73
1756 4503 8.889849 TTTTTCTTCGCATGCTTAATAAGTAC 57.110 30.769 17.13 0.00 0.00 2.73
1757 4504 9.502145 CATTTTTCTTCGCATGCTTAATAAGTA 57.498 29.630 17.13 0.00 0.00 2.24
1758 4505 8.028938 ACATTTTTCTTCGCATGCTTAATAAGT 58.971 29.630 17.13 0.00 0.00 2.24
1759 4506 8.316046 CACATTTTTCTTCGCATGCTTAATAAG 58.684 33.333 17.13 10.93 0.00 1.73
1760 4507 8.026026 TCACATTTTTCTTCGCATGCTTAATAA 58.974 29.630 17.13 6.28 0.00 1.40
2369 5160 8.153411 GTGTAAAAGCAAGCATTAAAACATACG 58.847 33.333 0.00 0.00 0.00 3.06
2621 5415 1.527380 GGAACCAAGTGGCGGTGAA 60.527 57.895 0.00 0.00 36.67 3.18
2777 5571 1.176527 CCCGTGATGAAGCCAATTGT 58.823 50.000 4.43 0.00 0.00 2.71
2865 5659 5.806654 ACCACATAAAGTTTTCTTGCCAT 57.193 34.783 0.00 0.00 40.37 4.40
3212 6151 4.566759 AGTGATAACCGATGTGTGAAATCG 59.433 41.667 0.00 0.00 45.08 3.34
3311 7293 7.387119 ACGTATGTCAGAACAGTATGAACTA 57.613 36.000 0.00 0.00 39.69 2.24
3449 8573 6.954684 ACATCTTAGAAACTAGGAAGAGGTCA 59.045 38.462 0.00 0.00 38.22 4.02
3745 8869 4.389687 GTGATGTTGAAAATCCAATGGCAC 59.610 41.667 0.00 0.00 0.00 5.01
4004 9128 2.805353 CCGCGAAGACGTCAGTGG 60.805 66.667 19.50 19.12 41.98 4.00
4591 9721 0.627451 AAGATTGGGCTGCATCCAGA 59.373 50.000 9.17 0.00 41.77 3.86
4602 9732 3.005791 GCCCATAAATTCGGAAGATTGGG 59.994 47.826 18.96 18.96 41.60 4.12
4645 9775 4.415881 AAACCACCTTGGGATTGTTTTC 57.584 40.909 0.00 0.00 43.37 2.29
4979 10113 6.692849 TCTTTAGCATCCCACATCATATCT 57.307 37.500 0.00 0.00 0.00 1.98
5124 10268 4.286549 TCCATGGCCATTTCTGAAAACATT 59.713 37.500 17.92 0.00 0.00 2.71
5300 10557 9.798994 GTAGTATATACCGCTATAATTGCTTGT 57.201 33.333 9.32 0.00 0.00 3.16
5547 11477 6.070995 TGTCATGGTACTGGTAAGTTCTTAGG 60.071 42.308 0.00 0.00 37.88 2.69
5562 11492 1.449601 CCGGCTGGTGTCATGGTAC 60.450 63.158 2.29 0.00 0.00 3.34
5563 11493 2.986290 CCGGCTGGTGTCATGGTA 59.014 61.111 2.29 0.00 0.00 3.25
5759 11712 3.758023 TGGAATACACAGCATCAACCTTG 59.242 43.478 0.00 0.00 0.00 3.61
5874 11850 3.820467 TCAATTCAAGACGTGGCTTCAAT 59.180 39.130 0.00 0.00 0.00 2.57
5879 11855 1.537202 GCTTCAATTCAAGACGTGGCT 59.463 47.619 0.00 0.00 0.00 4.75
5880 11856 1.537202 AGCTTCAATTCAAGACGTGGC 59.463 47.619 0.00 0.00 0.00 5.01
5881 11857 2.807967 TGAGCTTCAATTCAAGACGTGG 59.192 45.455 0.00 0.00 0.00 4.94
5882 11858 3.742882 TCTGAGCTTCAATTCAAGACGTG 59.257 43.478 0.00 0.00 0.00 4.49
5883 11859 3.995199 TCTGAGCTTCAATTCAAGACGT 58.005 40.909 0.00 0.00 0.00 4.34
5884 11860 5.542616 AATCTGAGCTTCAATTCAAGACG 57.457 39.130 0.00 0.00 0.00 4.18
5885 11861 6.906659 TGAAATCTGAGCTTCAATTCAAGAC 58.093 36.000 0.00 0.00 0.00 3.01
5886 11862 6.713903 ACTGAAATCTGAGCTTCAATTCAAGA 59.286 34.615 0.00 0.00 31.41 3.02
5887 11863 6.910995 ACTGAAATCTGAGCTTCAATTCAAG 58.089 36.000 0.00 0.00 31.41 3.02
5888 11864 6.889301 ACTGAAATCTGAGCTTCAATTCAA 57.111 33.333 0.00 0.00 31.41 2.69
5889 11865 6.294342 CCAACTGAAATCTGAGCTTCAATTCA 60.294 38.462 0.00 0.00 31.41 2.57
5890 11866 6.091437 CCAACTGAAATCTGAGCTTCAATTC 58.909 40.000 0.00 0.00 31.41 2.17
5891 11867 5.566230 GCCAACTGAAATCTGAGCTTCAATT 60.566 40.000 0.00 1.35 31.41 2.32
6125 12120 7.324935 TCGTCTTTCTGCCATAGTACATTTAA 58.675 34.615 0.00 0.00 0.00 1.52
6140 12135 2.376808 ATCACAGCCTCGTCTTTCTG 57.623 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.