Multiple sequence alignment - TraesCS2D01G579400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G579400 chr2D 100.000 3970 0 0 1 3970 641960140 641956171 0.000000e+00 7332
1 TraesCS2D01G579400 chr2D 96.241 1995 49 15 1985 3970 597904267 597902290 0.000000e+00 3245
2 TraesCS2D01G579400 chr2D 98.372 983 16 0 382 1364 597923481 597922499 0.000000e+00 1727
3 TraesCS2D01G579400 chr2D 97.634 634 15 0 1356 1989 597904932 597904299 0.000000e+00 1088
4 TraesCS2D01G579400 chr2D 91.056 805 47 12 901 1689 641608709 641607914 0.000000e+00 1064
5 TraesCS2D01G579400 chr2D 91.256 629 37 10 2222 2837 641607918 641607295 0.000000e+00 841
6 TraesCS2D01G579400 chr2D 97.187 391 5 2 1 391 597938875 597938491 0.000000e+00 656
7 TraesCS2D01G579400 chr2B 87.280 794 73 16 901 1689 800027058 800027828 0.000000e+00 881
8 TraesCS2D01G579400 chr2B 89.347 704 52 13 2222 2912 800027824 800028517 0.000000e+00 863
9 TraesCS2D01G579400 chr2B 94.737 152 7 1 403 554 100085682 100085532 6.630000e-58 235
10 TraesCS2D01G579400 chr2A 87.282 747 61 19 2222 2952 766709893 766709165 0.000000e+00 822
11 TraesCS2D01G579400 chr2A 85.732 806 73 18 904 1689 766710672 766709889 0.000000e+00 813
12 TraesCS2D01G579400 chr2A 94.156 154 8 1 400 553 686245989 686246141 2.390000e-57 233
13 TraesCS2D01G579400 chr4A 84.783 322 23 18 1688 1989 665952696 665952381 2.320000e-77 300
14 TraesCS2D01G579400 chr4A 95.395 152 6 1 403 554 481061828 481061678 1.430000e-59 241
15 TraesCS2D01G579400 chr4A 90.556 180 13 2 1810 1989 22533489 22533664 6.630000e-58 235
16 TraesCS2D01G579400 chr1A 93.434 198 13 0 2026 2223 586117990 586117793 1.080000e-75 294
17 TraesCS2D01G579400 chr1A 94.156 154 7 2 403 555 28715471 28715623 2.390000e-57 233
18 TraesCS2D01G579400 chr1A 94.631 149 8 0 403 551 563176506 563176358 8.580000e-57 231
19 TraesCS2D01G579400 chr1A 89.831 177 13 3 1813 1989 31816158 31815987 5.160000e-54 222
20 TraesCS2D01G579400 chr1A 85.350 157 21 2 2066 2222 372174518 372174364 1.140000e-35 161
21 TraesCS2D01G579400 chr1A 82.184 174 28 3 2051 2224 372175917 372175747 3.200000e-31 147
22 TraesCS2D01G579400 chr5B 92.655 177 9 2 1813 1989 592741026 592740854 6.590000e-63 252
23 TraesCS2D01G579400 chr5B 91.758 182 11 3 1813 1994 592748309 592748132 2.370000e-62 250
24 TraesCS2D01G579400 chr6A 91.525 177 11 2 1813 1989 448647256 448647084 1.430000e-59 241
25 TraesCS2D01G579400 chr6A 89.831 177 14 2 1813 1989 448648487 448648315 1.440000e-54 224
26 TraesCS2D01G579400 chr3B 94.231 156 8 1 399 554 127316362 127316208 1.840000e-58 237
27 TraesCS2D01G579400 chr7A 90.960 177 12 2 1813 1989 78566678 78566506 6.630000e-58 235
28 TraesCS2D01G579400 chr7A 90.960 177 12 2 1813 1989 78567893 78567721 6.630000e-58 235
29 TraesCS2D01G579400 chr5A 94.737 152 7 1 401 552 39844696 39844546 6.630000e-58 235
30 TraesCS2D01G579400 chr1B 94.156 154 8 1 400 553 229961510 229961358 2.390000e-57 233
31 TraesCS2D01G579400 chr1B 86.826 167 20 1 2058 2222 414144026 414143860 6.770000e-43 185
32 TraesCS2D01G579400 chr6B 87.302 189 16 8 1701 1884 92768417 92768232 4.020000e-50 209
33 TraesCS2D01G579400 chr3A 87.429 175 19 3 2052 2224 57294824 57294651 8.700000e-47 198
34 TraesCS2D01G579400 chr7D 86.667 135 18 0 2087 2221 625209511 625209645 2.470000e-32 150
35 TraesCS2D01G579400 chr7D 84.444 135 18 3 2087 2221 41408691 41408560 3.220000e-26 130
36 TraesCS2D01G579400 chr3D 80.874 183 21 13 2044 2221 609806043 609806216 8.950000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G579400 chr2D 641956171 641960140 3969 True 7332.0 7332 100.0000 1 3970 1 chr2D.!!$R3 3969
1 TraesCS2D01G579400 chr2D 597902290 597904932 2642 True 2166.5 3245 96.9375 1356 3970 2 chr2D.!!$R4 2614
2 TraesCS2D01G579400 chr2D 597922499 597923481 982 True 1727.0 1727 98.3720 382 1364 1 chr2D.!!$R1 982
3 TraesCS2D01G579400 chr2D 641607295 641608709 1414 True 952.5 1064 91.1560 901 2837 2 chr2D.!!$R5 1936
4 TraesCS2D01G579400 chr2B 800027058 800028517 1459 False 872.0 881 88.3135 901 2912 2 chr2B.!!$F1 2011
5 TraesCS2D01G579400 chr2A 766709165 766710672 1507 True 817.5 822 86.5070 904 2952 2 chr2A.!!$R1 2048
6 TraesCS2D01G579400 chr6A 448647084 448648487 1403 True 232.5 241 90.6780 1813 1989 2 chr6A.!!$R1 176
7 TraesCS2D01G579400 chr7A 78566506 78567893 1387 True 235.0 235 90.9600 1813 1989 2 chr7A.!!$R1 176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.188342 ATTGTCCACCTGGCCTTTGT 59.812 50.0 3.32 0.0 34.44 2.83 F
323 324 0.249073 ATCGACTCCGGCGATTTCAG 60.249 55.0 9.30 0.0 45.29 3.02 F
1811 1868 0.792640 AGAGCGCAAAACTCATCACG 59.207 50.0 11.47 0.0 36.58 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1808 0.819259 TGTGCAGCCTGGTGAAACTC 60.819 55.0 0.0 0.0 36.74 3.01 R
2026 2288 0.885879 TGTCAGATTCGTAGGTGCGT 59.114 50.0 0.0 0.0 0.00 5.24 R
3203 4065 0.904865 TGGGAGAACACCAGCGAGAT 60.905 55.0 0.0 0.0 33.23 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.429636 GCTTACACTTGTATGAAACTAACCA 57.570 36.000 6.49 0.00 0.00 3.67
25 26 7.295930 GCTTACACTTGTATGAAACTAACCAC 58.704 38.462 6.49 0.00 0.00 4.16
26 27 7.172703 GCTTACACTTGTATGAAACTAACCACT 59.827 37.037 6.49 0.00 0.00 4.00
27 28 9.701098 CTTACACTTGTATGAAACTAACCACTA 57.299 33.333 0.00 0.00 0.00 2.74
28 29 9.701098 TTACACTTGTATGAAACTAACCACTAG 57.299 33.333 0.00 0.00 0.00 2.57
29 30 7.159372 ACACTTGTATGAAACTAACCACTAGG 58.841 38.462 0.00 0.00 42.21 3.02
61 62 9.936759 TTTTCCTTCATTAATTAATTGTCCACC 57.063 29.630 11.05 0.00 0.00 4.61
62 63 8.893563 TTCCTTCATTAATTAATTGTCCACCT 57.106 30.769 11.05 0.00 0.00 4.00
63 64 8.292444 TCCTTCATTAATTAATTGTCCACCTG 57.708 34.615 11.05 0.00 0.00 4.00
64 65 7.341769 TCCTTCATTAATTAATTGTCCACCTGG 59.658 37.037 11.05 0.00 0.00 4.45
65 66 6.463995 TCATTAATTAATTGTCCACCTGGC 57.536 37.500 11.05 0.00 34.44 4.85
66 67 5.362430 TCATTAATTAATTGTCCACCTGGCC 59.638 40.000 11.05 0.00 34.44 5.36
67 68 3.473113 AATTAATTGTCCACCTGGCCT 57.527 42.857 3.32 0.00 34.44 5.19
68 69 2.990740 TTAATTGTCCACCTGGCCTT 57.009 45.000 3.32 0.00 34.44 4.35
69 70 2.990740 TAATTGTCCACCTGGCCTTT 57.009 45.000 3.32 0.00 34.44 3.11
70 71 1.341080 AATTGTCCACCTGGCCTTTG 58.659 50.000 3.32 0.00 34.44 2.77
71 72 0.188342 ATTGTCCACCTGGCCTTTGT 59.812 50.000 3.32 0.00 34.44 2.83
72 73 0.754957 TTGTCCACCTGGCCTTTGTG 60.755 55.000 3.32 8.60 34.44 3.33
73 74 2.203480 TCCACCTGGCCTTTGTGC 60.203 61.111 3.32 0.00 34.44 4.57
74 75 2.203538 CCACCTGGCCTTTGTGCT 60.204 61.111 3.32 0.00 0.00 4.40
75 76 2.567497 CCACCTGGCCTTTGTGCTG 61.567 63.158 3.32 0.00 0.00 4.41
76 77 2.914097 ACCTGGCCTTTGTGCTGC 60.914 61.111 3.32 0.00 0.00 5.25
77 78 3.688159 CCTGGCCTTTGTGCTGCC 61.688 66.667 3.32 0.00 45.56 4.85
80 81 2.914097 GGCCTTTGTGCTGCCAGT 60.914 61.111 0.00 0.00 44.70 4.00
81 82 2.337532 GCCTTTGTGCTGCCAGTG 59.662 61.111 0.00 0.00 0.00 3.66
82 83 2.492773 GCCTTTGTGCTGCCAGTGT 61.493 57.895 0.00 0.00 0.00 3.55
83 84 1.172180 GCCTTTGTGCTGCCAGTGTA 61.172 55.000 0.00 0.00 0.00 2.90
84 85 1.538047 CCTTTGTGCTGCCAGTGTAT 58.462 50.000 0.00 0.00 0.00 2.29
85 86 1.888512 CCTTTGTGCTGCCAGTGTATT 59.111 47.619 0.00 0.00 0.00 1.89
86 87 2.095059 CCTTTGTGCTGCCAGTGTATTC 60.095 50.000 0.00 0.00 0.00 1.75
87 88 2.268762 TTGTGCTGCCAGTGTATTCA 57.731 45.000 0.00 0.00 0.00 2.57
88 89 2.268762 TGTGCTGCCAGTGTATTCAA 57.731 45.000 0.00 0.00 0.00 2.69
89 90 2.580962 TGTGCTGCCAGTGTATTCAAA 58.419 42.857 0.00 0.00 0.00 2.69
90 91 2.954989 TGTGCTGCCAGTGTATTCAAAA 59.045 40.909 0.00 0.00 0.00 2.44
91 92 3.573538 TGTGCTGCCAGTGTATTCAAAAT 59.426 39.130 0.00 0.00 0.00 1.82
92 93 4.039004 TGTGCTGCCAGTGTATTCAAAATT 59.961 37.500 0.00 0.00 0.00 1.82
93 94 4.990426 GTGCTGCCAGTGTATTCAAAATTT 59.010 37.500 0.00 0.00 0.00 1.82
94 95 5.119125 GTGCTGCCAGTGTATTCAAAATTTC 59.881 40.000 0.00 0.00 0.00 2.17
95 96 4.627035 GCTGCCAGTGTATTCAAAATTTCC 59.373 41.667 0.00 0.00 0.00 3.13
96 97 4.804108 TGCCAGTGTATTCAAAATTTCCG 58.196 39.130 0.00 0.00 0.00 4.30
97 98 4.279671 TGCCAGTGTATTCAAAATTTCCGT 59.720 37.500 0.00 0.00 0.00 4.69
98 99 5.221342 TGCCAGTGTATTCAAAATTTCCGTT 60.221 36.000 0.00 0.00 0.00 4.44
99 100 5.694458 GCCAGTGTATTCAAAATTTCCGTTT 59.306 36.000 0.00 0.00 0.00 3.60
100 101 6.128929 GCCAGTGTATTCAAAATTTCCGTTTC 60.129 38.462 0.00 0.00 0.00 2.78
101 102 6.920758 CCAGTGTATTCAAAATTTCCGTTTCA 59.079 34.615 0.00 0.00 0.00 2.69
102 103 7.436673 CCAGTGTATTCAAAATTTCCGTTTCAA 59.563 33.333 0.00 0.00 0.00 2.69
103 104 8.265998 CAGTGTATTCAAAATTTCCGTTTCAAC 58.734 33.333 0.00 0.00 0.00 3.18
104 105 7.436970 AGTGTATTCAAAATTTCCGTTTCAACC 59.563 33.333 0.00 0.00 0.00 3.77
105 106 7.222999 GTGTATTCAAAATTTCCGTTTCAACCA 59.777 33.333 0.00 0.00 0.00 3.67
106 107 7.764443 TGTATTCAAAATTTCCGTTTCAACCAA 59.236 29.630 0.00 0.00 0.00 3.67
107 108 6.654793 TTCAAAATTTCCGTTTCAACCAAG 57.345 33.333 0.00 0.00 0.00 3.61
108 109 5.967088 TCAAAATTTCCGTTTCAACCAAGA 58.033 33.333 0.00 0.00 0.00 3.02
109 110 6.398918 TCAAAATTTCCGTTTCAACCAAGAA 58.601 32.000 0.00 0.00 0.00 2.52
110 111 6.874134 TCAAAATTTCCGTTTCAACCAAGAAA 59.126 30.769 0.00 0.00 35.28 2.52
111 112 6.902224 AAATTTCCGTTTCAACCAAGAAAG 57.098 33.333 0.00 0.00 38.11 2.62
112 113 4.379339 TTTCCGTTTCAACCAAGAAAGG 57.621 40.909 0.00 0.00 40.92 3.11
113 114 3.284793 TCCGTTTCAACCAAGAAAGGA 57.715 42.857 9.81 6.97 42.76 3.36
114 115 2.946990 TCCGTTTCAACCAAGAAAGGAC 59.053 45.455 9.81 0.00 42.76 3.85
115 116 2.034179 CCGTTTCAACCAAGAAAGGACC 59.966 50.000 9.81 0.00 42.76 4.46
116 117 2.685897 CGTTTCAACCAAGAAAGGACCA 59.314 45.455 0.00 0.00 42.76 4.02
117 118 3.317993 CGTTTCAACCAAGAAAGGACCAT 59.682 43.478 0.00 0.00 42.76 3.55
118 119 4.202111 CGTTTCAACCAAGAAAGGACCATT 60.202 41.667 0.00 0.00 42.76 3.16
119 120 5.009210 CGTTTCAACCAAGAAAGGACCATTA 59.991 40.000 0.00 0.00 42.76 1.90
120 121 6.460399 CGTTTCAACCAAGAAAGGACCATTAA 60.460 38.462 0.00 0.00 42.76 1.40
121 122 7.269316 GTTTCAACCAAGAAAGGACCATTAAA 58.731 34.615 0.00 0.00 38.11 1.52
122 123 7.425224 TTCAACCAAGAAAGGACCATTAAAA 57.575 32.000 0.00 0.00 0.00 1.52
123 124 7.610580 TCAACCAAGAAAGGACCATTAAAAT 57.389 32.000 0.00 0.00 0.00 1.82
124 125 7.441017 TCAACCAAGAAAGGACCATTAAAATG 58.559 34.615 0.00 0.00 36.17 2.32
125 126 7.288852 TCAACCAAGAAAGGACCATTAAAATGA 59.711 33.333 4.25 0.00 38.70 2.57
126 127 6.993079 ACCAAGAAAGGACCATTAAAATGAC 58.007 36.000 4.25 0.00 38.70 3.06
127 128 6.782494 ACCAAGAAAGGACCATTAAAATGACT 59.218 34.615 4.25 0.00 38.70 3.41
128 129 7.290014 ACCAAGAAAGGACCATTAAAATGACTT 59.710 33.333 4.25 3.60 38.70 3.01
129 130 8.150296 CCAAGAAAGGACCATTAAAATGACTTT 58.850 33.333 14.25 14.25 38.70 2.66
130 131 9.546428 CAAGAAAGGACCATTAAAATGACTTTT 57.454 29.630 14.93 11.79 38.70 2.27
167 168 6.757897 AGTAAGCATAAAAGCAGTAATGCA 57.242 33.333 18.53 0.00 45.62 3.96
168 169 7.338800 AGTAAGCATAAAAGCAGTAATGCAT 57.661 32.000 18.53 1.61 45.62 3.96
169 170 8.450578 AGTAAGCATAAAAGCAGTAATGCATA 57.549 30.769 18.53 7.78 45.62 3.14
170 171 9.071276 AGTAAGCATAAAAGCAGTAATGCATAT 57.929 29.630 18.53 9.72 45.62 1.78
171 172 9.121517 GTAAGCATAAAAGCAGTAATGCATATG 57.878 33.333 18.53 20.27 45.62 1.78
172 173 6.154445 AGCATAAAAGCAGTAATGCATATGC 58.846 36.000 31.25 31.25 45.62 3.14
173 174 6.239092 AGCATAAAAGCAGTAATGCATATGCA 60.239 34.615 34.97 31.29 45.51 3.96
187 188 5.954296 GCATATGCATAGAAGTTCCACAT 57.046 39.130 22.84 1.48 41.59 3.21
188 189 5.936054 GCATATGCATAGAAGTTCCACATC 58.064 41.667 22.84 0.00 41.59 3.06
189 190 5.390251 GCATATGCATAGAAGTTCCACATCG 60.390 44.000 22.84 0.00 41.59 3.84
190 191 3.610040 TGCATAGAAGTTCCACATCGT 57.390 42.857 0.00 0.00 0.00 3.73
191 192 3.261580 TGCATAGAAGTTCCACATCGTG 58.738 45.455 0.00 0.00 0.00 4.35
192 193 3.056179 TGCATAGAAGTTCCACATCGTGA 60.056 43.478 0.00 0.00 35.23 4.35
193 194 3.932710 GCATAGAAGTTCCACATCGTGAA 59.067 43.478 0.00 0.00 35.23 3.18
194 195 4.391830 GCATAGAAGTTCCACATCGTGAAA 59.608 41.667 0.00 0.00 35.23 2.69
195 196 5.065218 GCATAGAAGTTCCACATCGTGAAAT 59.935 40.000 0.00 0.00 35.23 2.17
196 197 6.481134 CATAGAAGTTCCACATCGTGAAATG 58.519 40.000 0.00 0.00 35.23 2.32
197 198 4.641396 AGAAGTTCCACATCGTGAAATGA 58.359 39.130 0.00 0.00 35.23 2.57
198 199 5.063204 AGAAGTTCCACATCGTGAAATGAA 58.937 37.500 0.00 0.00 34.16 2.57
199 200 5.707298 AGAAGTTCCACATCGTGAAATGAAT 59.293 36.000 0.00 0.00 34.16 2.57
200 201 6.878923 AGAAGTTCCACATCGTGAAATGAATA 59.121 34.615 0.00 0.00 34.16 1.75
201 202 7.554118 AGAAGTTCCACATCGTGAAATGAATAT 59.446 33.333 0.00 0.00 34.16 1.28
202 203 7.630242 AGTTCCACATCGTGAAATGAATATT 57.370 32.000 0.00 0.00 34.16 1.28
203 204 7.697691 AGTTCCACATCGTGAAATGAATATTC 58.302 34.615 8.60 8.60 34.16 1.75
204 205 7.336679 AGTTCCACATCGTGAAATGAATATTCA 59.663 33.333 20.07 20.07 37.37 2.57
205 206 7.250445 TCCACATCGTGAAATGAATATTCAG 57.750 36.000 21.97 8.71 37.46 3.02
206 207 6.823182 TCCACATCGTGAAATGAATATTCAGT 59.177 34.615 21.97 17.50 37.46 3.41
207 208 7.336679 TCCACATCGTGAAATGAATATTCAGTT 59.663 33.333 26.35 26.35 46.67 3.16
208 209 7.430211 CCACATCGTGAAATGAATATTCAGTTG 59.570 37.037 29.86 19.41 44.40 3.16
209 210 7.964559 CACATCGTGAAATGAATATTCAGTTGT 59.035 33.333 29.86 19.97 44.40 3.32
210 211 7.964559 ACATCGTGAAATGAATATTCAGTTGTG 59.035 33.333 29.86 21.18 44.40 3.33
211 212 6.314018 TCGTGAAATGAATATTCAGTTGTGC 58.686 36.000 29.86 18.37 44.40 4.57
212 213 5.225743 CGTGAAATGAATATTCAGTTGTGCG 59.774 40.000 29.86 24.43 44.40 5.34
213 214 6.314018 GTGAAATGAATATTCAGTTGTGCGA 58.686 36.000 29.86 10.14 44.40 5.10
214 215 6.968904 GTGAAATGAATATTCAGTTGTGCGAT 59.031 34.615 29.86 9.40 44.40 4.58
215 216 7.485913 GTGAAATGAATATTCAGTTGTGCGATT 59.514 33.333 29.86 11.54 44.40 3.34
216 217 8.672815 TGAAATGAATATTCAGTTGTGCGATTA 58.327 29.630 29.86 4.26 44.40 1.75
217 218 9.502145 GAAATGAATATTCAGTTGTGCGATTAA 57.498 29.630 29.86 0.84 44.40 1.40
218 219 8.841444 AATGAATATTCAGTTGTGCGATTAAC 57.159 30.769 21.97 0.00 41.08 2.01
219 220 7.371126 TGAATATTCAGTTGTGCGATTAACA 57.629 32.000 14.23 0.00 32.50 2.41
220 221 7.240674 TGAATATTCAGTTGTGCGATTAACAC 58.759 34.615 14.23 0.00 34.28 3.32
221 222 6.985188 ATATTCAGTTGTGCGATTAACACT 57.015 33.333 0.00 0.00 38.86 3.55
222 223 4.466567 TTCAGTTGTGCGATTAACACTG 57.533 40.909 0.00 0.00 38.86 3.66
223 224 3.462982 TCAGTTGTGCGATTAACACTGT 58.537 40.909 0.00 0.00 38.86 3.55
224 225 3.874543 TCAGTTGTGCGATTAACACTGTT 59.125 39.130 0.00 0.00 38.86 3.16
225 226 3.968096 CAGTTGTGCGATTAACACTGTTG 59.032 43.478 4.57 0.00 38.86 3.33
226 227 3.874543 AGTTGTGCGATTAACACTGTTGA 59.125 39.130 4.57 0.00 38.86 3.18
227 228 4.024893 AGTTGTGCGATTAACACTGTTGAG 60.025 41.667 4.57 0.00 38.86 3.02
228 229 2.805671 TGTGCGATTAACACTGTTGAGG 59.194 45.455 4.57 0.00 38.86 3.86
229 230 2.806244 GTGCGATTAACACTGTTGAGGT 59.194 45.455 4.57 0.00 35.12 3.85
230 231 2.805671 TGCGATTAACACTGTTGAGGTG 59.194 45.455 4.57 0.00 40.19 4.00
231 232 3.064207 GCGATTAACACTGTTGAGGTGA 58.936 45.455 4.57 0.00 38.01 4.02
232 233 3.120649 GCGATTAACACTGTTGAGGTGAC 60.121 47.826 4.57 0.00 38.01 3.67
233 234 3.121279 CGATTAACACTGTTGAGGTGACG 59.879 47.826 4.57 0.00 38.01 4.35
234 235 3.804786 TTAACACTGTTGAGGTGACGA 57.195 42.857 4.57 0.00 38.01 4.20
235 236 2.225068 AACACTGTTGAGGTGACGAG 57.775 50.000 0.00 0.00 38.01 4.18
236 237 1.399714 ACACTGTTGAGGTGACGAGA 58.600 50.000 0.00 0.00 38.01 4.04
237 238 1.754803 ACACTGTTGAGGTGACGAGAA 59.245 47.619 0.00 0.00 38.01 2.87
238 239 2.223829 ACACTGTTGAGGTGACGAGAAG 60.224 50.000 0.00 0.00 38.01 2.85
239 240 2.032620 ACTGTTGAGGTGACGAGAAGT 58.967 47.619 0.00 0.00 0.00 3.01
240 241 3.004419 CACTGTTGAGGTGACGAGAAGTA 59.996 47.826 0.00 0.00 36.89 2.24
241 242 3.004524 ACTGTTGAGGTGACGAGAAGTAC 59.995 47.826 0.00 0.00 0.00 2.73
242 243 2.295349 TGTTGAGGTGACGAGAAGTACC 59.705 50.000 0.00 0.00 0.00 3.34
243 244 2.557490 GTTGAGGTGACGAGAAGTACCT 59.443 50.000 0.00 0.00 45.77 3.08
244 245 2.872732 TGAGGTGACGAGAAGTACCTT 58.127 47.619 0.00 0.00 43.28 3.50
245 246 3.228453 TGAGGTGACGAGAAGTACCTTT 58.772 45.455 0.00 0.00 43.28 3.11
246 247 3.255149 TGAGGTGACGAGAAGTACCTTTC 59.745 47.826 0.00 0.00 43.28 2.62
247 248 3.498334 AGGTGACGAGAAGTACCTTTCT 58.502 45.455 0.00 0.00 40.51 2.52
248 249 4.660168 AGGTGACGAGAAGTACCTTTCTA 58.340 43.478 0.00 0.00 40.51 2.10
249 250 5.075493 AGGTGACGAGAAGTACCTTTCTAA 58.925 41.667 0.00 0.00 40.51 2.10
250 251 5.537674 AGGTGACGAGAAGTACCTTTCTAAA 59.462 40.000 0.00 0.00 40.51 1.85
251 252 6.210984 AGGTGACGAGAAGTACCTTTCTAAAT 59.789 38.462 0.00 0.00 40.51 1.40
252 253 7.395489 AGGTGACGAGAAGTACCTTTCTAAATA 59.605 37.037 0.00 0.00 40.51 1.40
253 254 8.196103 GGTGACGAGAAGTACCTTTCTAAATAT 58.804 37.037 0.00 0.00 37.53 1.28
254 255 9.021863 GTGACGAGAAGTACCTTTCTAAATATG 57.978 37.037 0.00 0.00 37.53 1.78
255 256 8.746530 TGACGAGAAGTACCTTTCTAAATATGT 58.253 33.333 0.00 0.00 37.53 2.29
256 257 8.928270 ACGAGAAGTACCTTTCTAAATATGTG 57.072 34.615 0.00 0.00 37.53 3.21
257 258 7.491696 ACGAGAAGTACCTTTCTAAATATGTGC 59.508 37.037 0.00 0.00 37.53 4.57
258 259 7.491372 CGAGAAGTACCTTTCTAAATATGTGCA 59.509 37.037 0.00 0.00 37.53 4.57
259 260 9.331282 GAGAAGTACCTTTCTAAATATGTGCAT 57.669 33.333 0.00 0.00 37.53 3.96
260 261 9.331282 AGAAGTACCTTTCTAAATATGTGCATC 57.669 33.333 0.00 0.00 35.70 3.91
261 262 8.451908 AAGTACCTTTCTAAATATGTGCATCC 57.548 34.615 0.00 0.00 0.00 3.51
262 263 7.806180 AGTACCTTTCTAAATATGTGCATCCT 58.194 34.615 0.00 0.00 0.00 3.24
263 264 8.275040 AGTACCTTTCTAAATATGTGCATCCTT 58.725 33.333 0.00 0.00 0.00 3.36
264 265 7.573968 ACCTTTCTAAATATGTGCATCCTTC 57.426 36.000 0.00 0.00 0.00 3.46
265 266 7.349598 ACCTTTCTAAATATGTGCATCCTTCT 58.650 34.615 0.00 0.00 0.00 2.85
266 267 7.500559 ACCTTTCTAAATATGTGCATCCTTCTC 59.499 37.037 0.00 0.00 0.00 2.87
267 268 7.718753 CCTTTCTAAATATGTGCATCCTTCTCT 59.281 37.037 0.00 0.00 0.00 3.10
268 269 8.668510 TTTCTAAATATGTGCATCCTTCTCTC 57.331 34.615 0.00 0.00 0.00 3.20
269 270 7.609097 TCTAAATATGTGCATCCTTCTCTCT 57.391 36.000 0.00 0.00 0.00 3.10
270 271 8.027524 TCTAAATATGTGCATCCTTCTCTCTT 57.972 34.615 0.00 0.00 0.00 2.85
271 272 9.147732 TCTAAATATGTGCATCCTTCTCTCTTA 57.852 33.333 0.00 0.00 0.00 2.10
272 273 9.770097 CTAAATATGTGCATCCTTCTCTCTTAA 57.230 33.333 0.00 0.00 0.00 1.85
274 275 9.466497 AAATATGTGCATCCTTCTCTCTTAAAA 57.534 29.630 0.00 0.00 0.00 1.52
275 276 6.998968 ATGTGCATCCTTCTCTCTTAAAAG 57.001 37.500 0.00 0.00 0.00 2.27
276 277 4.697352 TGTGCATCCTTCTCTCTTAAAAGC 59.303 41.667 0.00 0.00 0.00 3.51
277 278 4.940654 GTGCATCCTTCTCTCTTAAAAGCT 59.059 41.667 0.00 0.00 0.00 3.74
278 279 5.414144 GTGCATCCTTCTCTCTTAAAAGCTT 59.586 40.000 0.00 0.00 0.00 3.74
279 280 5.645497 TGCATCCTTCTCTCTTAAAAGCTTC 59.355 40.000 0.00 0.00 0.00 3.86
280 281 5.645497 GCATCCTTCTCTCTTAAAAGCTTCA 59.355 40.000 0.00 0.00 0.00 3.02
281 282 6.183360 GCATCCTTCTCTCTTAAAAGCTTCAG 60.183 42.308 0.00 0.00 0.00 3.02
282 283 5.241662 TCCTTCTCTCTTAAAAGCTTCAGC 58.758 41.667 0.00 0.00 42.49 4.26
283 284 4.999950 CCTTCTCTCTTAAAAGCTTCAGCA 59.000 41.667 0.00 0.00 45.16 4.41
284 285 5.647225 CCTTCTCTCTTAAAAGCTTCAGCAT 59.353 40.000 0.00 0.00 45.16 3.79
285 286 6.150809 CCTTCTCTCTTAAAAGCTTCAGCATT 59.849 38.462 0.00 0.00 45.16 3.56
286 287 6.492007 TCTCTCTTAAAAGCTTCAGCATTG 57.508 37.500 0.00 0.00 45.16 2.82
287 288 6.233434 TCTCTCTTAAAAGCTTCAGCATTGA 58.767 36.000 0.00 0.00 45.16 2.57
288 289 6.370994 TCTCTCTTAAAAGCTTCAGCATTGAG 59.629 38.462 0.00 3.40 45.16 3.02
289 290 6.000219 TCTCTTAAAAGCTTCAGCATTGAGT 59.000 36.000 0.00 0.00 45.16 3.41
290 291 7.161404 TCTCTTAAAAGCTTCAGCATTGAGTA 58.839 34.615 0.00 0.00 45.16 2.59
291 292 7.332926 TCTCTTAAAAGCTTCAGCATTGAGTAG 59.667 37.037 0.00 0.00 45.16 2.57
292 293 6.936900 TCTTAAAAGCTTCAGCATTGAGTAGT 59.063 34.615 0.00 0.00 45.16 2.73
293 294 5.368256 AAAAGCTTCAGCATTGAGTAGTG 57.632 39.130 0.00 0.00 45.16 2.74
294 295 2.354259 AGCTTCAGCATTGAGTAGTGC 58.646 47.619 0.75 0.00 45.16 4.40
295 296 2.079158 GCTTCAGCATTGAGTAGTGCA 58.921 47.619 0.00 0.00 43.63 4.57
296 297 2.095532 GCTTCAGCATTGAGTAGTGCAG 59.904 50.000 0.00 0.00 43.63 4.41
297 298 2.391616 TCAGCATTGAGTAGTGCAGG 57.608 50.000 0.00 0.00 43.63 4.85
298 299 1.901833 TCAGCATTGAGTAGTGCAGGA 59.098 47.619 0.00 0.00 43.63 3.86
299 300 2.093816 TCAGCATTGAGTAGTGCAGGAG 60.094 50.000 0.00 0.00 43.63 3.69
300 301 1.209019 AGCATTGAGTAGTGCAGGAGG 59.791 52.381 0.00 0.00 43.63 4.30
301 302 1.661341 CATTGAGTAGTGCAGGAGGC 58.339 55.000 0.00 0.00 45.13 4.70
302 303 1.209019 CATTGAGTAGTGCAGGAGGCT 59.791 52.381 0.00 0.00 45.15 4.58
303 304 0.610174 TTGAGTAGTGCAGGAGGCTG 59.390 55.000 0.00 0.00 45.15 4.85
304 305 0.251787 TGAGTAGTGCAGGAGGCTGA 60.252 55.000 0.00 0.00 45.15 4.26
305 306 1.118838 GAGTAGTGCAGGAGGCTGAT 58.881 55.000 0.00 0.00 45.15 2.90
306 307 1.068434 GAGTAGTGCAGGAGGCTGATC 59.932 57.143 0.00 0.00 45.15 2.92
307 308 0.249238 GTAGTGCAGGAGGCTGATCG 60.249 60.000 0.00 0.00 45.15 3.69
308 309 0.395724 TAGTGCAGGAGGCTGATCGA 60.396 55.000 0.00 0.00 45.15 3.59
309 310 1.520342 GTGCAGGAGGCTGATCGAC 60.520 63.158 0.00 0.00 45.15 4.20
310 311 1.683707 TGCAGGAGGCTGATCGACT 60.684 57.895 0.00 0.00 45.15 4.18
314 315 2.725008 GAGGCTGATCGACTCCGG 59.275 66.667 8.67 0.00 42.33 5.14
315 316 3.492311 GAGGCTGATCGACTCCGGC 62.492 68.421 0.00 6.57 42.33 6.13
316 317 4.933064 GGCTGATCGACTCCGGCG 62.933 72.222 0.00 0.00 36.24 6.46
317 318 3.889044 GCTGATCGACTCCGGCGA 61.889 66.667 9.30 0.77 42.48 5.54
321 322 4.732106 ATCGACTCCGGCGATTTC 57.268 55.556 9.30 0.00 45.29 2.17
322 323 1.813859 ATCGACTCCGGCGATTTCA 59.186 52.632 9.30 0.00 45.29 2.69
323 324 0.249073 ATCGACTCCGGCGATTTCAG 60.249 55.000 9.30 0.00 45.29 3.02
324 325 2.517450 CGACTCCGGCGATTTCAGC 61.517 63.158 9.30 0.00 0.00 4.26
333 334 1.751437 GCGATTTCAGCCCCTTTACT 58.249 50.000 0.00 0.00 0.00 2.24
334 335 2.914059 GCGATTTCAGCCCCTTTACTA 58.086 47.619 0.00 0.00 0.00 1.82
335 336 3.275999 GCGATTTCAGCCCCTTTACTAA 58.724 45.455 0.00 0.00 0.00 2.24
336 337 3.883489 GCGATTTCAGCCCCTTTACTAAT 59.117 43.478 0.00 0.00 0.00 1.73
337 338 4.023963 GCGATTTCAGCCCCTTTACTAATC 60.024 45.833 0.00 0.00 0.00 1.75
338 339 5.368989 CGATTTCAGCCCCTTTACTAATCT 58.631 41.667 0.00 0.00 0.00 2.40
339 340 5.823045 CGATTTCAGCCCCTTTACTAATCTT 59.177 40.000 0.00 0.00 0.00 2.40
340 341 6.238484 CGATTTCAGCCCCTTTACTAATCTTG 60.238 42.308 0.00 0.00 0.00 3.02
341 342 3.886123 TCAGCCCCTTTACTAATCTTGC 58.114 45.455 0.00 0.00 0.00 4.01
342 343 2.614057 CAGCCCCTTTACTAATCTTGCG 59.386 50.000 0.00 0.00 0.00 4.85
343 344 2.504175 AGCCCCTTTACTAATCTTGCGA 59.496 45.455 0.00 0.00 0.00 5.10
344 345 2.872858 GCCCCTTTACTAATCTTGCGAG 59.127 50.000 0.00 0.00 0.00 5.03
345 346 2.872858 CCCCTTTACTAATCTTGCGAGC 59.127 50.000 0.00 0.00 0.00 5.03
346 347 3.432326 CCCCTTTACTAATCTTGCGAGCT 60.432 47.826 0.00 0.00 0.00 4.09
347 348 3.804873 CCCTTTACTAATCTTGCGAGCTC 59.195 47.826 2.73 2.73 0.00 4.09
348 349 4.442192 CCCTTTACTAATCTTGCGAGCTCT 60.442 45.833 12.85 0.00 0.00 4.09
349 350 4.742659 CCTTTACTAATCTTGCGAGCTCTC 59.257 45.833 12.85 4.04 0.00 3.20
350 351 2.880963 ACTAATCTTGCGAGCTCTCC 57.119 50.000 12.85 3.14 0.00 3.71
351 352 2.383855 ACTAATCTTGCGAGCTCTCCT 58.616 47.619 12.85 0.00 0.00 3.69
352 353 2.763448 ACTAATCTTGCGAGCTCTCCTT 59.237 45.455 12.85 0.00 0.00 3.36
353 354 2.021355 AATCTTGCGAGCTCTCCTTG 57.979 50.000 12.85 0.00 0.00 3.61
354 355 0.901124 ATCTTGCGAGCTCTCCTTGT 59.099 50.000 12.85 0.00 0.00 3.16
355 356 1.545841 TCTTGCGAGCTCTCCTTGTA 58.454 50.000 12.85 0.00 0.00 2.41
356 357 1.474478 TCTTGCGAGCTCTCCTTGTAG 59.526 52.381 12.85 0.00 0.00 2.74
357 358 1.474478 CTTGCGAGCTCTCCTTGTAGA 59.526 52.381 12.85 0.00 0.00 2.59
358 359 1.769026 TGCGAGCTCTCCTTGTAGAT 58.231 50.000 12.85 0.00 0.00 1.98
359 360 1.406898 TGCGAGCTCTCCTTGTAGATG 59.593 52.381 12.85 0.00 0.00 2.90
360 361 1.269517 GCGAGCTCTCCTTGTAGATGG 60.270 57.143 12.85 0.00 0.00 3.51
361 362 2.028130 CGAGCTCTCCTTGTAGATGGT 58.972 52.381 12.85 0.00 0.00 3.55
362 363 2.428890 CGAGCTCTCCTTGTAGATGGTT 59.571 50.000 12.85 0.00 0.00 3.67
363 364 3.490078 CGAGCTCTCCTTGTAGATGGTTC 60.490 52.174 12.85 0.00 0.00 3.62
364 365 3.445008 AGCTCTCCTTGTAGATGGTTCA 58.555 45.455 0.00 0.00 0.00 3.18
365 366 3.450457 AGCTCTCCTTGTAGATGGTTCAG 59.550 47.826 0.00 0.00 0.00 3.02
366 367 3.196685 GCTCTCCTTGTAGATGGTTCAGT 59.803 47.826 0.00 0.00 0.00 3.41
367 368 4.402793 GCTCTCCTTGTAGATGGTTCAGTA 59.597 45.833 0.00 0.00 0.00 2.74
368 369 5.451242 GCTCTCCTTGTAGATGGTTCAGTAG 60.451 48.000 0.00 0.00 0.00 2.57
369 370 5.580998 TCTCCTTGTAGATGGTTCAGTAGT 58.419 41.667 0.00 0.00 0.00 2.73
370 371 5.419155 TCTCCTTGTAGATGGTTCAGTAGTG 59.581 44.000 0.00 0.00 0.00 2.74
371 372 4.081642 TCCTTGTAGATGGTTCAGTAGTGC 60.082 45.833 0.00 0.00 0.00 4.40
372 373 3.887621 TGTAGATGGTTCAGTAGTGCC 57.112 47.619 0.00 0.00 0.00 5.01
373 374 3.441101 TGTAGATGGTTCAGTAGTGCCT 58.559 45.455 0.00 0.00 0.00 4.75
374 375 3.838317 TGTAGATGGTTCAGTAGTGCCTT 59.162 43.478 0.00 0.00 0.00 4.35
375 376 3.340814 AGATGGTTCAGTAGTGCCTTG 57.659 47.619 0.00 0.00 0.00 3.61
376 377 2.639839 AGATGGTTCAGTAGTGCCTTGT 59.360 45.455 0.00 0.00 0.00 3.16
377 378 2.543777 TGGTTCAGTAGTGCCTTGTC 57.456 50.000 0.00 0.00 0.00 3.18
378 379 1.765904 TGGTTCAGTAGTGCCTTGTCA 59.234 47.619 0.00 0.00 0.00 3.58
379 380 2.143925 GGTTCAGTAGTGCCTTGTCAC 58.856 52.381 0.00 0.00 37.24 3.67
380 381 2.484770 GGTTCAGTAGTGCCTTGTCACA 60.485 50.000 0.00 0.00 39.35 3.58
395 396 6.398095 CCTTGTCACAGACATCACTACATTA 58.602 40.000 0.12 0.00 42.40 1.90
398 399 8.846943 TTGTCACAGACATCACTACATTAATT 57.153 30.769 0.12 0.00 42.40 1.40
404 405 7.984050 ACAGACATCACTACATTAATTGAGGAG 59.016 37.037 6.54 0.00 0.00 3.69
432 433 4.084433 GCTATACACACGACGTTTTTGGAA 60.084 41.667 0.00 0.00 0.00 3.53
536 537 1.831389 ATCGTGCGTGCAGTGTTGTC 61.831 55.000 0.00 0.00 0.00 3.18
719 720 5.128171 TGGTATGGTAGTACAGTGATTGGTC 59.872 44.000 2.06 0.00 0.00 4.02
1381 1438 7.868775 TCTCCAATGAATCGATCAATCAATTC 58.131 34.615 0.00 0.00 42.54 2.17
1735 1792 5.065090 GTCGGACTAGAGGTAGAAGAAGAAC 59.935 48.000 0.00 0.00 0.00 3.01
1751 1808 4.516698 AGAAGAACAAGCACAATACACTGG 59.483 41.667 0.00 0.00 0.00 4.00
1761 1818 4.133820 CACAATACACTGGAGTTTCACCA 58.866 43.478 0.00 0.00 35.96 4.17
1811 1868 0.792640 AGAGCGCAAAACTCATCACG 59.207 50.000 11.47 0.00 36.58 4.35
2026 2288 1.299544 CACGCCACACACGTACTCA 60.300 57.895 0.00 0.00 42.96 3.41
2182 2552 4.891727 GCATCCGACGTGCCCGAT 62.892 66.667 0.00 0.00 36.61 4.18
2183 2553 2.961721 CATCCGACGTGCCCGATG 60.962 66.667 0.00 0.00 37.88 3.84
2184 2554 3.144871 ATCCGACGTGCCCGATGA 61.145 61.111 0.00 0.00 37.88 2.92
2185 2555 3.138930 ATCCGACGTGCCCGATGAG 62.139 63.158 0.00 0.00 37.88 2.90
2754 3610 0.539051 CTTTCAGCCTCTCCACCGAT 59.461 55.000 0.00 0.00 0.00 4.18
2818 3674 3.370633 GCCGGGAAGGAGATAAAGAACTT 60.371 47.826 2.18 0.00 45.00 2.66
3107 3969 0.248296 TGTCTTCGCGTTTGCAAACC 60.248 50.000 31.14 23.14 42.97 3.27
3167 4029 2.205074 GATACTTGCACCTCCATGTCG 58.795 52.381 0.00 0.00 0.00 4.35
3203 4065 3.082548 TCCGGATAAATTTTCGGCAACA 58.917 40.909 17.09 3.67 41.98 3.33
3452 4314 2.420722 ACTTCTCCGTCGATGAGTTCTC 59.579 50.000 6.11 0.00 0.00 2.87
3675 4537 3.008485 AGTGCCTCCTGAAGTTTCTAAGG 59.992 47.826 0.00 0.00 0.00 2.69
3692 4554 8.944029 GTTTCTAAGGTAAACTATCAAAGGACC 58.056 37.037 0.00 0.00 34.66 4.46
3742 4604 7.984050 CAGGTAATCAACAGTAATGAGACATCT 59.016 37.037 0.00 0.00 0.00 2.90
3818 4682 6.072112 TCAAACATCAAGTAGAGGCAAAAC 57.928 37.500 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.172703 AGTGGTTAGTTTCATACAAGTGTAAGC 59.827 37.037 0.00 0.00 33.76 3.09
1 2 8.603242 AGTGGTTAGTTTCATACAAGTGTAAG 57.397 34.615 0.00 0.00 33.76 2.34
2 3 9.701098 CTAGTGGTTAGTTTCATACAAGTGTAA 57.299 33.333 0.00 0.00 33.76 2.41
3 4 8.308931 CCTAGTGGTTAGTTTCATACAAGTGTA 58.691 37.037 0.00 0.00 34.67 2.90
4 5 7.159372 CCTAGTGGTTAGTTTCATACAAGTGT 58.841 38.462 0.00 0.00 0.00 3.55
5 6 7.159372 ACCTAGTGGTTAGTTTCATACAAGTG 58.841 38.462 0.00 0.00 46.05 3.16
6 7 7.312415 ACCTAGTGGTTAGTTTCATACAAGT 57.688 36.000 0.00 0.00 46.05 3.16
7 8 8.529476 ACTACCTAGTGGTTAGTTTCATACAAG 58.471 37.037 0.00 0.00 46.05 3.16
8 9 8.426569 ACTACCTAGTGGTTAGTTTCATACAA 57.573 34.615 0.00 0.00 46.05 2.41
9 10 8.426569 AACTACCTAGTGGTTAGTTTCATACA 57.573 34.615 0.00 0.00 46.05 2.29
10 11 9.716531 AAAACTACCTAGTGGTTAGTTTCATAC 57.283 33.333 9.16 0.00 46.05 2.39
35 36 9.936759 GGTGGACAATTAATTAATGAAGGAAAA 57.063 29.630 11.42 0.00 0.00 2.29
36 37 9.320295 AGGTGGACAATTAATTAATGAAGGAAA 57.680 29.630 11.42 0.00 0.00 3.13
37 38 8.748412 CAGGTGGACAATTAATTAATGAAGGAA 58.252 33.333 11.42 0.00 0.00 3.36
38 39 7.341769 CCAGGTGGACAATTAATTAATGAAGGA 59.658 37.037 11.42 0.00 37.39 3.36
39 40 7.491682 CCAGGTGGACAATTAATTAATGAAGG 58.508 38.462 11.42 5.02 37.39 3.46
40 41 6.980397 GCCAGGTGGACAATTAATTAATGAAG 59.020 38.462 11.42 7.54 37.39 3.02
41 42 6.127196 GGCCAGGTGGACAATTAATTAATGAA 60.127 38.462 11.42 0.00 44.76 2.57
42 43 5.362430 GGCCAGGTGGACAATTAATTAATGA 59.638 40.000 11.42 0.00 44.76 2.57
43 44 5.600696 GGCCAGGTGGACAATTAATTAATG 58.399 41.667 11.42 8.36 44.76 1.90
44 45 5.869649 GGCCAGGTGGACAATTAATTAAT 57.130 39.130 4.81 4.81 44.76 1.40
55 56 2.564721 GCACAAAGGCCAGGTGGAC 61.565 63.158 19.09 0.00 46.16 4.02
56 57 2.203480 GCACAAAGGCCAGGTGGA 60.203 61.111 19.09 0.00 37.39 4.02
57 58 2.203538 AGCACAAAGGCCAGGTGG 60.204 61.111 19.09 0.00 38.53 4.61
58 59 3.045142 CAGCACAAAGGCCAGGTG 58.955 61.111 5.01 11.43 35.68 4.00
59 60 2.914097 GCAGCACAAAGGCCAGGT 60.914 61.111 5.01 0.00 0.00 4.00
60 61 3.688159 GGCAGCACAAAGGCCAGG 61.688 66.667 5.01 0.00 46.92 4.45
64 65 1.172180 TACACTGGCAGCACAAAGGC 61.172 55.000 15.89 0.00 0.00 4.35
65 66 1.538047 ATACACTGGCAGCACAAAGG 58.462 50.000 15.89 0.00 0.00 3.11
66 67 2.553602 TGAATACACTGGCAGCACAAAG 59.446 45.455 15.89 0.28 0.00 2.77
67 68 2.580962 TGAATACACTGGCAGCACAAA 58.419 42.857 15.89 0.00 0.00 2.83
68 69 2.268762 TGAATACACTGGCAGCACAA 57.731 45.000 15.89 0.00 0.00 3.33
69 70 2.268762 TTGAATACACTGGCAGCACA 57.731 45.000 15.89 0.00 0.00 4.57
70 71 3.641437 TTTTGAATACACTGGCAGCAC 57.359 42.857 15.89 0.55 0.00 4.40
71 72 4.870123 AATTTTGAATACACTGGCAGCA 57.130 36.364 15.89 0.00 0.00 4.41
72 73 4.627035 GGAAATTTTGAATACACTGGCAGC 59.373 41.667 15.89 0.00 0.00 5.25
73 74 4.858692 CGGAAATTTTGAATACACTGGCAG 59.141 41.667 14.16 14.16 0.00 4.85
74 75 4.279671 ACGGAAATTTTGAATACACTGGCA 59.720 37.500 0.00 0.00 0.00 4.92
75 76 4.805219 ACGGAAATTTTGAATACACTGGC 58.195 39.130 0.00 0.00 0.00 4.85
76 77 6.920758 TGAAACGGAAATTTTGAATACACTGG 59.079 34.615 0.00 0.00 0.00 4.00
77 78 7.922505 TGAAACGGAAATTTTGAATACACTG 57.077 32.000 0.00 0.00 0.00 3.66
78 79 7.436970 GGTTGAAACGGAAATTTTGAATACACT 59.563 33.333 0.00 0.00 0.00 3.55
79 80 7.222999 TGGTTGAAACGGAAATTTTGAATACAC 59.777 33.333 0.00 0.00 0.00 2.90
80 81 7.265673 TGGTTGAAACGGAAATTTTGAATACA 58.734 30.769 0.00 0.00 0.00 2.29
81 82 7.701809 TGGTTGAAACGGAAATTTTGAATAC 57.298 32.000 0.00 0.00 0.00 1.89
82 83 8.198109 TCTTGGTTGAAACGGAAATTTTGAATA 58.802 29.630 0.00 0.00 0.00 1.75
83 84 7.044798 TCTTGGTTGAAACGGAAATTTTGAAT 58.955 30.769 0.00 0.00 0.00 2.57
84 85 6.398918 TCTTGGTTGAAACGGAAATTTTGAA 58.601 32.000 0.00 0.00 0.00 2.69
85 86 5.967088 TCTTGGTTGAAACGGAAATTTTGA 58.033 33.333 0.00 0.00 0.00 2.69
86 87 6.654793 TTCTTGGTTGAAACGGAAATTTTG 57.345 33.333 0.00 0.00 0.00 2.44
87 88 6.315144 CCTTTCTTGGTTGAAACGGAAATTTT 59.685 34.615 0.00 0.00 33.11 1.82
88 89 5.815222 CCTTTCTTGGTTGAAACGGAAATTT 59.185 36.000 0.00 0.00 33.11 1.82
89 90 5.128008 TCCTTTCTTGGTTGAAACGGAAATT 59.872 36.000 2.65 0.00 34.05 1.82
90 91 4.647399 TCCTTTCTTGGTTGAAACGGAAAT 59.353 37.500 2.65 0.00 34.05 2.17
91 92 4.017808 TCCTTTCTTGGTTGAAACGGAAA 58.982 39.130 2.34 2.34 34.05 3.13
92 93 3.379057 GTCCTTTCTTGGTTGAAACGGAA 59.621 43.478 0.00 0.00 36.27 4.30
93 94 2.946990 GTCCTTTCTTGGTTGAAACGGA 59.053 45.455 0.00 0.00 34.30 4.69
94 95 2.034179 GGTCCTTTCTTGGTTGAAACGG 59.966 50.000 0.00 0.00 33.11 4.44
95 96 2.685897 TGGTCCTTTCTTGGTTGAAACG 59.314 45.455 0.00 0.00 33.11 3.60
96 97 4.937201 ATGGTCCTTTCTTGGTTGAAAC 57.063 40.909 0.00 0.00 33.11 2.78
97 98 7.425224 TTTAATGGTCCTTTCTTGGTTGAAA 57.575 32.000 0.00 0.00 35.07 2.69
98 99 7.425224 TTTTAATGGTCCTTTCTTGGTTGAA 57.575 32.000 0.00 0.00 0.00 2.69
99 100 7.288852 TCATTTTAATGGTCCTTTCTTGGTTGA 59.711 33.333 2.85 0.00 37.03 3.18
100 101 7.384932 GTCATTTTAATGGTCCTTTCTTGGTTG 59.615 37.037 2.85 0.00 37.03 3.77
101 102 7.290014 AGTCATTTTAATGGTCCTTTCTTGGTT 59.710 33.333 2.85 0.00 37.03 3.67
102 103 6.782494 AGTCATTTTAATGGTCCTTTCTTGGT 59.218 34.615 2.85 0.00 37.03 3.67
103 104 7.232118 AGTCATTTTAATGGTCCTTTCTTGG 57.768 36.000 2.85 0.00 37.03 3.61
104 105 9.546428 AAAAGTCATTTTAATGGTCCTTTCTTG 57.454 29.630 2.85 0.00 36.85 3.02
164 165 5.471116 GATGTGGAACTTCTATGCATATGCA 59.529 40.000 31.29 31.29 45.03 3.96
165 166 5.390251 CGATGTGGAACTTCTATGCATATGC 60.390 44.000 21.09 21.09 38.72 3.14
166 167 5.698089 ACGATGTGGAACTTCTATGCATATG 59.302 40.000 6.92 0.00 38.72 1.78
167 168 5.698089 CACGATGTGGAACTTCTATGCATAT 59.302 40.000 6.92 0.00 38.72 1.78
168 169 5.049828 CACGATGTGGAACTTCTATGCATA 58.950 41.667 6.20 6.20 38.72 3.14
169 170 3.873361 CACGATGTGGAACTTCTATGCAT 59.127 43.478 3.79 3.79 38.72 3.96
170 171 3.056179 TCACGATGTGGAACTTCTATGCA 60.056 43.478 0.00 0.00 38.72 3.96
171 172 3.521560 TCACGATGTGGAACTTCTATGC 58.478 45.455 0.00 0.00 38.72 3.14
172 173 6.313658 TCATTTCACGATGTGGAACTTCTATG 59.686 38.462 0.00 0.00 38.72 2.23
173 174 6.406370 TCATTTCACGATGTGGAACTTCTAT 58.594 36.000 0.00 0.00 38.72 1.98
174 175 5.789521 TCATTTCACGATGTGGAACTTCTA 58.210 37.500 0.00 0.00 38.72 2.10
175 176 4.641396 TCATTTCACGATGTGGAACTTCT 58.359 39.130 0.00 0.00 38.72 2.85
176 177 5.356882 TTCATTTCACGATGTGGAACTTC 57.643 39.130 0.00 0.00 33.52 3.01
177 178 5.964958 ATTCATTTCACGATGTGGAACTT 57.035 34.783 0.00 0.00 33.52 2.66
178 179 7.336679 TGAATATTCATTTCACGATGTGGAACT 59.663 33.333 14.23 0.00 33.52 3.01
179 180 7.471721 TGAATATTCATTTCACGATGTGGAAC 58.528 34.615 14.23 0.00 33.52 3.62
180 181 7.336679 ACTGAATATTCATTTCACGATGTGGAA 59.663 33.333 18.26 0.00 35.34 3.53
181 182 6.823182 ACTGAATATTCATTTCACGATGTGGA 59.177 34.615 18.26 0.00 36.46 4.02
182 183 7.019774 ACTGAATATTCATTTCACGATGTGG 57.980 36.000 18.26 5.00 36.46 4.17
183 184 7.964559 ACAACTGAATATTCATTTCACGATGTG 59.035 33.333 18.26 8.11 36.46 3.21
184 185 7.964559 CACAACTGAATATTCATTTCACGATGT 59.035 33.333 18.26 12.81 36.46 3.06
185 186 7.044510 GCACAACTGAATATTCATTTCACGATG 60.045 37.037 18.26 12.25 36.46 3.84
186 187 6.968904 GCACAACTGAATATTCATTTCACGAT 59.031 34.615 18.26 0.00 36.46 3.73
187 188 6.314018 GCACAACTGAATATTCATTTCACGA 58.686 36.000 18.26 0.00 36.46 4.35
188 189 5.225743 CGCACAACTGAATATTCATTTCACG 59.774 40.000 18.26 15.85 36.46 4.35
189 190 6.314018 TCGCACAACTGAATATTCATTTCAC 58.686 36.000 18.26 9.40 36.46 3.18
190 191 6.493449 TCGCACAACTGAATATTCATTTCA 57.507 33.333 18.26 0.00 36.46 2.69
191 192 7.975866 AATCGCACAACTGAATATTCATTTC 57.024 32.000 18.26 7.03 36.46 2.17
192 193 9.289303 GTTAATCGCACAACTGAATATTCATTT 57.711 29.630 18.26 15.75 36.46 2.32
193 194 8.458052 TGTTAATCGCACAACTGAATATTCATT 58.542 29.630 18.26 10.43 36.46 2.57
194 195 7.910162 GTGTTAATCGCACAACTGAATATTCAT 59.090 33.333 18.26 2.11 35.44 2.57
195 196 7.119116 AGTGTTAATCGCACAACTGAATATTCA 59.881 33.333 17.07 17.07 39.17 2.57
196 197 7.426456 CAGTGTTAATCGCACAACTGAATATTC 59.574 37.037 8.60 8.60 39.17 1.75
197 198 7.094805 ACAGTGTTAATCGCACAACTGAATATT 60.095 33.333 7.56 0.00 39.17 1.28
198 199 6.371548 ACAGTGTTAATCGCACAACTGAATAT 59.628 34.615 7.56 0.00 39.17 1.28
199 200 5.699001 ACAGTGTTAATCGCACAACTGAATA 59.301 36.000 7.56 0.00 39.17 1.75
200 201 4.515191 ACAGTGTTAATCGCACAACTGAAT 59.485 37.500 7.56 0.00 39.17 2.57
201 202 3.874543 ACAGTGTTAATCGCACAACTGAA 59.125 39.130 7.56 0.00 39.17 3.02
202 203 3.462982 ACAGTGTTAATCGCACAACTGA 58.537 40.909 7.56 0.00 39.17 3.41
203 204 3.878086 ACAGTGTTAATCGCACAACTG 57.122 42.857 0.00 0.00 39.17 3.16
204 205 3.874543 TCAACAGTGTTAATCGCACAACT 59.125 39.130 8.49 0.00 39.17 3.16
205 206 4.203950 TCAACAGTGTTAATCGCACAAC 57.796 40.909 8.49 0.00 39.17 3.32
206 207 3.249799 CCTCAACAGTGTTAATCGCACAA 59.750 43.478 8.49 0.00 39.17 3.33
207 208 2.805671 CCTCAACAGTGTTAATCGCACA 59.194 45.455 8.49 0.00 39.17 4.57
208 209 2.806244 ACCTCAACAGTGTTAATCGCAC 59.194 45.455 8.49 0.00 37.13 5.34
209 210 2.805671 CACCTCAACAGTGTTAATCGCA 59.194 45.455 8.49 0.00 0.00 5.10
210 211 3.064207 TCACCTCAACAGTGTTAATCGC 58.936 45.455 8.49 0.00 36.58 4.58
211 212 3.121279 CGTCACCTCAACAGTGTTAATCG 59.879 47.826 8.49 0.00 36.58 3.34
212 213 4.304110 TCGTCACCTCAACAGTGTTAATC 58.696 43.478 8.49 0.00 36.58 1.75
213 214 4.038763 TCTCGTCACCTCAACAGTGTTAAT 59.961 41.667 8.49 0.00 36.58 1.40
214 215 3.382227 TCTCGTCACCTCAACAGTGTTAA 59.618 43.478 8.49 0.00 36.58 2.01
215 216 2.953648 TCTCGTCACCTCAACAGTGTTA 59.046 45.455 8.49 0.00 36.58 2.41
216 217 1.754803 TCTCGTCACCTCAACAGTGTT 59.245 47.619 1.64 1.64 36.58 3.32
217 218 1.399714 TCTCGTCACCTCAACAGTGT 58.600 50.000 0.00 0.00 36.58 3.55
218 219 2.223829 ACTTCTCGTCACCTCAACAGTG 60.224 50.000 0.00 0.00 36.54 3.66
219 220 2.032620 ACTTCTCGTCACCTCAACAGT 58.967 47.619 0.00 0.00 0.00 3.55
220 221 2.802787 ACTTCTCGTCACCTCAACAG 57.197 50.000 0.00 0.00 0.00 3.16
221 222 2.295349 GGTACTTCTCGTCACCTCAACA 59.705 50.000 0.00 0.00 0.00 3.33
222 223 2.557490 AGGTACTTCTCGTCACCTCAAC 59.443 50.000 0.00 0.00 36.69 3.18
223 224 2.872732 AGGTACTTCTCGTCACCTCAA 58.127 47.619 0.00 0.00 36.69 3.02
224 225 2.581216 AGGTACTTCTCGTCACCTCA 57.419 50.000 0.00 0.00 36.69 3.86
238 239 8.451908 AAGGATGCACATATTTAGAAAGGTAC 57.548 34.615 0.00 0.00 0.00 3.34
239 240 8.494433 AGAAGGATGCACATATTTAGAAAGGTA 58.506 33.333 0.00 0.00 0.00 3.08
240 241 7.349598 AGAAGGATGCACATATTTAGAAAGGT 58.650 34.615 0.00 0.00 0.00 3.50
241 242 7.718753 AGAGAAGGATGCACATATTTAGAAAGG 59.281 37.037 0.00 0.00 0.00 3.11
242 243 8.674263 AGAGAAGGATGCACATATTTAGAAAG 57.326 34.615 0.00 0.00 0.00 2.62
243 244 8.489489 AGAGAGAAGGATGCACATATTTAGAAA 58.511 33.333 0.00 0.00 0.00 2.52
244 245 8.027524 AGAGAGAAGGATGCACATATTTAGAA 57.972 34.615 0.00 0.00 0.00 2.10
245 246 7.609097 AGAGAGAAGGATGCACATATTTAGA 57.391 36.000 0.00 0.00 0.00 2.10
246 247 9.770097 TTAAGAGAGAAGGATGCACATATTTAG 57.230 33.333 0.00 0.00 0.00 1.85
248 249 9.466497 TTTTAAGAGAGAAGGATGCACATATTT 57.534 29.630 0.00 0.00 0.00 1.40
249 250 9.118300 CTTTTAAGAGAGAAGGATGCACATATT 57.882 33.333 0.00 0.00 0.00 1.28
250 251 7.228308 GCTTTTAAGAGAGAAGGATGCACATAT 59.772 37.037 0.00 0.00 0.00 1.78
251 252 6.540189 GCTTTTAAGAGAGAAGGATGCACATA 59.460 38.462 0.00 0.00 0.00 2.29
252 253 5.356470 GCTTTTAAGAGAGAAGGATGCACAT 59.644 40.000 0.00 0.00 0.00 3.21
253 254 4.697352 GCTTTTAAGAGAGAAGGATGCACA 59.303 41.667 0.00 0.00 0.00 4.57
254 255 4.940654 AGCTTTTAAGAGAGAAGGATGCAC 59.059 41.667 0.00 0.00 0.00 4.57
255 256 5.171339 AGCTTTTAAGAGAGAAGGATGCA 57.829 39.130 0.00 0.00 0.00 3.96
256 257 5.645497 TGAAGCTTTTAAGAGAGAAGGATGC 59.355 40.000 0.00 0.00 0.00 3.91
257 258 6.183360 GCTGAAGCTTTTAAGAGAGAAGGATG 60.183 42.308 0.00 0.00 38.21 3.51
258 259 5.879777 GCTGAAGCTTTTAAGAGAGAAGGAT 59.120 40.000 0.00 0.00 38.21 3.24
259 260 5.221722 TGCTGAAGCTTTTAAGAGAGAAGGA 60.222 40.000 0.00 0.00 42.66 3.36
260 261 4.999950 TGCTGAAGCTTTTAAGAGAGAAGG 59.000 41.667 0.00 0.00 42.66 3.46
261 262 6.740411 ATGCTGAAGCTTTTAAGAGAGAAG 57.260 37.500 0.00 0.00 42.66 2.85
262 263 6.712095 TCAATGCTGAAGCTTTTAAGAGAGAA 59.288 34.615 0.00 0.00 42.66 2.87
263 264 6.233434 TCAATGCTGAAGCTTTTAAGAGAGA 58.767 36.000 0.00 0.00 42.66 3.10
264 265 6.149142 ACTCAATGCTGAAGCTTTTAAGAGAG 59.851 38.462 16.78 13.85 42.66 3.20
265 266 6.000219 ACTCAATGCTGAAGCTTTTAAGAGA 59.000 36.000 16.78 6.05 42.66 3.10
266 267 6.251655 ACTCAATGCTGAAGCTTTTAAGAG 57.748 37.500 0.00 8.88 42.66 2.85
267 268 6.936900 ACTACTCAATGCTGAAGCTTTTAAGA 59.063 34.615 0.00 0.00 42.66 2.10
268 269 7.020010 CACTACTCAATGCTGAAGCTTTTAAG 58.980 38.462 0.00 0.08 42.66 1.85
269 270 6.568462 GCACTACTCAATGCTGAAGCTTTTAA 60.568 38.462 0.00 0.00 42.66 1.52
270 271 5.106555 GCACTACTCAATGCTGAAGCTTTTA 60.107 40.000 0.00 0.00 42.66 1.52
271 272 4.320788 GCACTACTCAATGCTGAAGCTTTT 60.321 41.667 0.00 0.00 42.66 2.27
272 273 3.190118 GCACTACTCAATGCTGAAGCTTT 59.810 43.478 0.00 0.61 42.66 3.51
273 274 2.746362 GCACTACTCAATGCTGAAGCTT 59.254 45.455 0.00 0.00 42.66 3.74
274 275 2.289882 TGCACTACTCAATGCTGAAGCT 60.290 45.455 3.61 0.00 42.55 3.74
275 276 2.079158 TGCACTACTCAATGCTGAAGC 58.921 47.619 0.00 0.00 42.55 3.86
276 277 2.676839 CCTGCACTACTCAATGCTGAAG 59.323 50.000 4.87 0.00 41.74 3.02
277 278 2.302733 TCCTGCACTACTCAATGCTGAA 59.697 45.455 4.87 0.00 41.74 3.02
278 279 1.901833 TCCTGCACTACTCAATGCTGA 59.098 47.619 4.87 0.00 41.74 4.26
279 280 2.277969 CTCCTGCACTACTCAATGCTG 58.722 52.381 0.00 0.00 42.55 4.41
280 281 1.209019 CCTCCTGCACTACTCAATGCT 59.791 52.381 0.00 0.00 42.55 3.79
281 282 1.661341 CCTCCTGCACTACTCAATGC 58.339 55.000 0.00 0.00 42.40 3.56
282 283 1.209019 AGCCTCCTGCACTACTCAATG 59.791 52.381 0.00 0.00 44.83 2.82
283 284 1.209019 CAGCCTCCTGCACTACTCAAT 59.791 52.381 0.00 0.00 44.83 2.57
284 285 0.610174 CAGCCTCCTGCACTACTCAA 59.390 55.000 0.00 0.00 44.83 3.02
285 286 0.251787 TCAGCCTCCTGCACTACTCA 60.252 55.000 0.00 0.00 44.83 3.41
286 287 1.068434 GATCAGCCTCCTGCACTACTC 59.932 57.143 0.00 0.00 44.83 2.59
287 288 1.118838 GATCAGCCTCCTGCACTACT 58.881 55.000 0.00 0.00 44.83 2.57
288 289 0.249238 CGATCAGCCTCCTGCACTAC 60.249 60.000 0.00 0.00 44.83 2.73
289 290 0.395724 TCGATCAGCCTCCTGCACTA 60.396 55.000 0.00 0.00 44.83 2.74
290 291 1.683707 TCGATCAGCCTCCTGCACT 60.684 57.895 0.00 0.00 44.83 4.40
291 292 1.520342 GTCGATCAGCCTCCTGCAC 60.520 63.158 0.00 0.00 44.83 4.57
292 293 1.670949 GAGTCGATCAGCCTCCTGCA 61.671 60.000 0.00 0.00 44.83 4.41
293 294 1.067250 GAGTCGATCAGCCTCCTGC 59.933 63.158 0.00 0.00 39.00 4.85
294 295 1.739049 GGAGTCGATCAGCCTCCTG 59.261 63.158 10.89 0.00 41.31 3.86
295 296 1.826054 CGGAGTCGATCAGCCTCCT 60.826 63.158 14.91 0.00 42.17 3.69
296 297 2.725008 CGGAGTCGATCAGCCTCC 59.275 66.667 8.60 8.60 41.15 4.30
297 298 2.725008 CCGGAGTCGATCAGCCTC 59.275 66.667 0.00 0.00 39.00 4.70
298 299 3.532155 GCCGGAGTCGATCAGCCT 61.532 66.667 5.05 0.00 39.00 4.58
299 300 4.933064 CGCCGGAGTCGATCAGCC 62.933 72.222 5.05 0.00 39.00 4.85
300 301 3.889044 TCGCCGGAGTCGATCAGC 61.889 66.667 5.05 0.00 27.85 4.26
305 306 1.138883 CTGAAATCGCCGGAGTCGA 59.861 57.895 5.05 5.08 46.40 4.20
306 307 2.517450 GCTGAAATCGCCGGAGTCG 61.517 63.158 5.05 0.00 0.00 4.18
307 308 2.174319 GGCTGAAATCGCCGGAGTC 61.174 63.158 5.05 0.00 37.87 3.36
308 309 2.125106 GGCTGAAATCGCCGGAGT 60.125 61.111 5.05 0.00 37.87 3.85
313 314 0.738975 GTAAAGGGGCTGAAATCGCC 59.261 55.000 7.47 7.47 46.83 5.54
314 315 1.751437 AGTAAAGGGGCTGAAATCGC 58.249 50.000 0.00 0.00 0.00 4.58
315 316 5.368989 AGATTAGTAAAGGGGCTGAAATCG 58.631 41.667 0.00 0.00 0.00 3.34
316 317 6.460261 GCAAGATTAGTAAAGGGGCTGAAATC 60.460 42.308 0.00 0.00 0.00 2.17
317 318 5.360999 GCAAGATTAGTAAAGGGGCTGAAAT 59.639 40.000 0.00 0.00 0.00 2.17
318 319 4.705023 GCAAGATTAGTAAAGGGGCTGAAA 59.295 41.667 0.00 0.00 0.00 2.69
319 320 4.270008 GCAAGATTAGTAAAGGGGCTGAA 58.730 43.478 0.00 0.00 0.00 3.02
320 321 3.681594 CGCAAGATTAGTAAAGGGGCTGA 60.682 47.826 0.00 0.00 43.02 4.26
321 322 2.614057 CGCAAGATTAGTAAAGGGGCTG 59.386 50.000 0.00 0.00 43.02 4.85
322 323 2.504175 TCGCAAGATTAGTAAAGGGGCT 59.496 45.455 0.00 0.00 45.01 5.19
323 324 2.914059 TCGCAAGATTAGTAAAGGGGC 58.086 47.619 0.00 0.00 45.01 5.80
337 338 1.474478 TCTACAAGGAGAGCTCGCAAG 59.526 52.381 19.55 10.20 0.00 4.01
338 339 1.545841 TCTACAAGGAGAGCTCGCAA 58.454 50.000 19.55 0.00 0.00 4.85
339 340 1.406898 CATCTACAAGGAGAGCTCGCA 59.593 52.381 19.55 0.00 0.00 5.10
340 341 1.269517 CCATCTACAAGGAGAGCTCGC 60.270 57.143 9.23 9.23 0.00 5.03
341 342 2.028130 ACCATCTACAAGGAGAGCTCG 58.972 52.381 8.37 0.00 0.00 5.03
342 343 3.449018 TGAACCATCTACAAGGAGAGCTC 59.551 47.826 5.27 5.27 0.00 4.09
343 344 3.445008 TGAACCATCTACAAGGAGAGCT 58.555 45.455 0.00 0.00 0.00 4.09
344 345 3.196685 ACTGAACCATCTACAAGGAGAGC 59.803 47.826 0.00 0.00 0.00 4.09
345 346 5.654650 ACTACTGAACCATCTACAAGGAGAG 59.345 44.000 0.00 0.00 0.00 3.20
346 347 5.419155 CACTACTGAACCATCTACAAGGAGA 59.581 44.000 0.00 0.00 0.00 3.71
347 348 5.655488 CACTACTGAACCATCTACAAGGAG 58.345 45.833 0.00 0.00 0.00 3.69
348 349 4.081642 GCACTACTGAACCATCTACAAGGA 60.082 45.833 0.00 0.00 0.00 3.36
349 350 4.184629 GCACTACTGAACCATCTACAAGG 58.815 47.826 0.00 0.00 0.00 3.61
350 351 4.081420 AGGCACTACTGAACCATCTACAAG 60.081 45.833 0.00 0.00 36.02 3.16
351 352 3.838317 AGGCACTACTGAACCATCTACAA 59.162 43.478 0.00 0.00 36.02 2.41
352 353 3.441101 AGGCACTACTGAACCATCTACA 58.559 45.455 0.00 0.00 36.02 2.74
353 354 4.184629 CAAGGCACTACTGAACCATCTAC 58.815 47.826 0.00 0.00 38.49 2.59
354 355 3.838317 ACAAGGCACTACTGAACCATCTA 59.162 43.478 0.00 0.00 38.49 1.98
355 356 2.639839 ACAAGGCACTACTGAACCATCT 59.360 45.455 0.00 0.00 38.49 2.90
356 357 3.003480 GACAAGGCACTACTGAACCATC 58.997 50.000 0.00 0.00 38.49 3.51
357 358 2.371841 TGACAAGGCACTACTGAACCAT 59.628 45.455 0.00 0.00 38.49 3.55
358 359 1.765904 TGACAAGGCACTACTGAACCA 59.234 47.619 0.00 0.00 38.49 3.67
359 360 2.143925 GTGACAAGGCACTACTGAACC 58.856 52.381 0.00 0.00 38.49 3.62
360 361 2.802816 CTGTGACAAGGCACTACTGAAC 59.197 50.000 7.67 0.00 38.49 3.18
361 362 2.698274 TCTGTGACAAGGCACTACTGAA 59.302 45.455 7.67 0.00 38.49 3.02
362 363 2.035961 GTCTGTGACAAGGCACTACTGA 59.964 50.000 7.67 0.00 38.49 3.41
363 364 2.224042 TGTCTGTGACAAGGCACTACTG 60.224 50.000 7.67 0.00 39.78 2.74
364 365 2.039418 TGTCTGTGACAAGGCACTACT 58.961 47.619 7.67 0.00 39.78 2.57
365 366 2.526304 TGTCTGTGACAAGGCACTAC 57.474 50.000 7.67 6.41 39.78 2.73
366 367 2.632512 TGATGTCTGTGACAAGGCACTA 59.367 45.455 7.67 0.00 45.96 2.74
367 368 1.417517 TGATGTCTGTGACAAGGCACT 59.582 47.619 7.67 0.00 45.96 4.40
368 369 1.532868 GTGATGTCTGTGACAAGGCAC 59.467 52.381 4.46 0.00 45.96 5.01
369 370 1.417517 AGTGATGTCTGTGACAAGGCA 59.582 47.619 4.46 1.75 45.96 4.75
370 371 2.175878 AGTGATGTCTGTGACAAGGC 57.824 50.000 4.46 0.00 45.96 4.35
371 372 4.257267 TGTAGTGATGTCTGTGACAAGG 57.743 45.455 4.46 0.00 45.96 3.61
372 373 7.889589 TTAATGTAGTGATGTCTGTGACAAG 57.110 36.000 4.46 0.00 45.96 3.16
373 374 8.720562 CAATTAATGTAGTGATGTCTGTGACAA 58.279 33.333 4.46 0.00 45.96 3.18
374 375 8.093927 TCAATTAATGTAGTGATGTCTGTGACA 58.906 33.333 2.77 2.77 46.90 3.58
375 376 8.479313 TCAATTAATGTAGTGATGTCTGTGAC 57.521 34.615 0.00 0.00 0.00 3.67
376 377 7.765819 CCTCAATTAATGTAGTGATGTCTGTGA 59.234 37.037 0.00 0.00 0.00 3.58
377 378 7.765819 TCCTCAATTAATGTAGTGATGTCTGTG 59.234 37.037 0.00 0.00 0.00 3.66
378 379 7.851228 TCCTCAATTAATGTAGTGATGTCTGT 58.149 34.615 0.00 0.00 0.00 3.41
379 380 8.200120 TCTCCTCAATTAATGTAGTGATGTCTG 58.800 37.037 0.00 0.00 0.00 3.51
380 381 8.311395 TCTCCTCAATTAATGTAGTGATGTCT 57.689 34.615 0.00 0.00 0.00 3.41
395 396 4.406972 TGTGTATAGCAGCTCTCCTCAATT 59.593 41.667 0.00 0.00 0.00 2.32
398 399 2.690497 GTGTGTATAGCAGCTCTCCTCA 59.310 50.000 0.00 0.00 0.00 3.86
404 405 1.202154 ACGTCGTGTGTATAGCAGCTC 60.202 52.381 0.00 0.00 0.00 4.09
432 433 2.100749 TGGAGTATCGTTCATGCATCGT 59.899 45.455 0.00 0.00 34.37 3.73
536 537 9.088512 AGCTCAATTAACGAAAATACTAGACAG 57.911 33.333 0.00 0.00 0.00 3.51
1668 1725 1.284297 CGTTGACGATGCAGCTGTCA 61.284 55.000 20.24 20.24 43.02 3.58
1735 1792 4.275689 TGAAACTCCAGTGTATTGTGCTTG 59.724 41.667 0.00 0.00 0.00 4.01
1751 1808 0.819259 TGTGCAGCCTGGTGAAACTC 60.819 55.000 0.00 0.00 36.74 3.01
1811 1868 1.301716 ATGGCCACGACTGTGTGTC 60.302 57.895 8.16 0.00 44.92 3.67
2026 2288 0.885879 TGTCAGATTCGTAGGTGCGT 59.114 50.000 0.00 0.00 0.00 5.24
2167 2537 3.138930 CTCATCGGGCACGTCGGAT 62.139 63.158 8.89 0.00 41.85 4.18
2179 2549 2.509336 GTGTGGTCGGGCTCATCG 60.509 66.667 0.00 0.00 0.00 3.84
2180 2550 2.125106 GGTGTGGTCGGGCTCATC 60.125 66.667 0.00 0.00 0.00 2.92
2181 2551 2.927856 TGGTGTGGTCGGGCTCAT 60.928 61.111 0.00 0.00 0.00 2.90
2182 2552 3.936203 GTGGTGTGGTCGGGCTCA 61.936 66.667 0.00 0.00 0.00 4.26
2204 2574 2.031508 ACGTTTGTTGGAATAAGCCACG 60.032 45.455 0.00 0.00 37.75 4.94
2501 3285 0.037046 GAAGCCGAACGGGACCTTAA 60.037 55.000 15.01 0.00 38.47 1.85
2502 3286 1.593265 GAAGCCGAACGGGACCTTA 59.407 57.895 15.01 0.00 38.47 2.69
2503 3287 2.346365 GAAGCCGAACGGGACCTT 59.654 61.111 15.01 9.43 38.47 3.50
2504 3288 3.703127 GGAAGCCGAACGGGACCT 61.703 66.667 15.01 0.97 38.47 3.85
2732 3588 1.377856 GTGGAGAGGCTGAAAGGGC 60.378 63.158 0.00 0.00 0.00 5.19
2754 3610 4.697756 CCAAGCGCCGGGAACTCA 62.698 66.667 2.29 0.00 0.00 3.41
2839 3697 4.638421 ACTCTCTGTCTCTGGTATCTTTCG 59.362 45.833 0.00 0.00 0.00 3.46
2994 3855 2.026075 TGAGCCACATGGTTGATCATCA 60.026 45.455 0.00 0.00 37.57 3.07
3077 3939 2.161609 ACGCGAAGACAATTCCAAATCC 59.838 45.455 15.93 0.00 0.00 3.01
3107 3969 9.994432 GTGAGATAGATTTTAGTGGACATTTTG 57.006 33.333 0.00 0.00 0.00 2.44
3167 4029 9.490379 AATTTATCCGGAATCTATACTTGACAC 57.510 33.333 9.01 0.00 0.00 3.67
3203 4065 0.904865 TGGGAGAACACCAGCGAGAT 60.905 55.000 0.00 0.00 33.23 2.75
3433 4295 2.420372 CTGAGAACTCATCGACGGAGAA 59.580 50.000 19.57 2.87 39.13 2.87
3675 4537 6.235664 TGAACCTGGTCCTTTGATAGTTTAC 58.764 40.000 0.00 0.00 0.00 2.01
3692 4554 7.331026 TGTTAATCCTGATAGAGTTGAACCTG 58.669 38.462 0.00 0.00 0.00 4.00
3818 4682 4.424061 TCTTCCATGACAGCAATTTTCG 57.576 40.909 0.00 0.00 0.00 3.46
3855 4719 4.836825 ACAACAGATTTCGATGACCTGAT 58.163 39.130 10.30 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.