Multiple sequence alignment - TraesCS2D01G579100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G579100 | chr2D | 100.000 | 5530 | 0 | 0 | 1 | 5530 | 641609531 | 641615060 | 0.000000e+00 | 10213.0 |
1 | TraesCS2D01G579100 | chr2D | 80.039 | 1027 | 113 | 42 | 2144 | 3129 | 642415125 | 642416100 | 0.000000e+00 | 676.0 |
2 | TraesCS2D01G579100 | chr2D | 83.500 | 600 | 81 | 10 | 2529 | 3128 | 642240990 | 642240409 | 1.350000e-150 | 544.0 |
3 | TraesCS2D01G579100 | chr2D | 78.173 | 646 | 118 | 16 | 3872 | 4499 | 642417633 | 642418273 | 1.870000e-104 | 390.0 |
4 | TraesCS2D01G579100 | chr2D | 95.021 | 241 | 6 | 4 | 286 | 526 | 641951192 | 641950958 | 1.880000e-99 | 374.0 |
5 | TraesCS2D01G579100 | chr2D | 94.215 | 242 | 8 | 4 | 285 | 526 | 597897309 | 597897074 | 1.130000e-96 | 364.0 |
6 | TraesCS2D01G579100 | chr2D | 92.800 | 250 | 14 | 1 | 1 | 250 | 597897556 | 597897311 | 5.270000e-95 | 359.0 |
7 | TraesCS2D01G579100 | chr2D | 92.400 | 250 | 15 | 1 | 1 | 250 | 641951440 | 641951195 | 2.450000e-93 | 353.0 |
8 | TraesCS2D01G579100 | chr2D | 80.795 | 453 | 62 | 16 | 2624 | 3068 | 642940578 | 642941013 | 1.150000e-86 | 331.0 |
9 | TraesCS2D01G579100 | chr2D | 78.832 | 411 | 59 | 16 | 2655 | 3053 | 642443772 | 642444166 | 9.200000e-63 | 252.0 |
10 | TraesCS2D01G579100 | chr2D | 74.715 | 526 | 107 | 21 | 1013 | 1516 | 642414429 | 642414950 | 1.560000e-50 | 211.0 |
11 | TraesCS2D01G579100 | chr2D | 87.778 | 180 | 14 | 2 | 1 | 180 | 598048350 | 598048521 | 2.610000e-48 | 204.0 |
12 | TraesCS2D01G579100 | chr2D | 87.027 | 185 | 16 | 2 | 1 | 185 | 598020159 | 598020335 | 9.390000e-48 | 202.0 |
13 | TraesCS2D01G579100 | chr2D | 91.667 | 108 | 4 | 2 | 774 | 881 | 641950917 | 641950815 | 1.610000e-30 | 145.0 |
14 | TraesCS2D01G579100 | chr2D | 93.151 | 73 | 5 | 0 | 3586 | 3658 | 642416602 | 642416674 | 2.110000e-19 | 108.0 |
15 | TraesCS2D01G579100 | chr2D | 93.478 | 46 | 3 | 0 | 3903 | 3948 | 595120272 | 595120227 | 9.940000e-08 | 69.4 |
16 | TraesCS2D01G579100 | chr2D | 100.000 | 31 | 0 | 0 | 4800 | 4830 | 641614300 | 641614330 | 2.150000e-04 | 58.4 |
17 | TraesCS2D01G579100 | chr2D | 100.000 | 31 | 0 | 0 | 4770 | 4800 | 641614330 | 641614360 | 2.150000e-04 | 58.4 |
18 | TraesCS2D01G579100 | chr2A | 93.008 | 1416 | 80 | 8 | 2093 | 3504 | 766714324 | 766715724 | 0.000000e+00 | 2049.0 |
19 | TraesCS2D01G579100 | chr2A | 92.764 | 1147 | 65 | 6 | 3669 | 4800 | 766717230 | 766718373 | 0.000000e+00 | 1642.0 |
20 | TraesCS2D01G579100 | chr2A | 90.801 | 1098 | 62 | 12 | 999 | 2089 | 766713220 | 766714285 | 0.000000e+00 | 1432.0 |
21 | TraesCS2D01G579100 | chr2A | 97.375 | 419 | 6 | 4 | 4799 | 5214 | 766718342 | 766718758 | 0.000000e+00 | 708.0 |
22 | TraesCS2D01G579100 | chr2A | 82.238 | 822 | 92 | 30 | 2316 | 3127 | 767560114 | 767560891 | 0.000000e+00 | 660.0 |
23 | TraesCS2D01G579100 | chr2A | 81.939 | 825 | 93 | 32 | 2316 | 3129 | 767486138 | 767485359 | 0.000000e+00 | 647.0 |
24 | TraesCS2D01G579100 | chr2A | 84.839 | 620 | 74 | 12 | 2506 | 3125 | 767138508 | 767139107 | 1.700000e-169 | 606.0 |
25 | TraesCS2D01G579100 | chr2A | 90.231 | 389 | 32 | 2 | 10 | 398 | 766712448 | 766712830 | 2.300000e-138 | 503.0 |
26 | TraesCS2D01G579100 | chr2A | 79.570 | 651 | 110 | 6 | 3872 | 4499 | 767562501 | 767563151 | 1.410000e-120 | 444.0 |
27 | TraesCS2D01G579100 | chr2A | 94.882 | 254 | 9 | 3 | 5277 | 5530 | 766719097 | 766719346 | 1.440000e-105 | 394.0 |
28 | TraesCS2D01G579100 | chr2A | 79.123 | 479 | 51 | 6 | 3205 | 3658 | 767139368 | 767139822 | 9.070000e-73 | 285.0 |
29 | TraesCS2D01G579100 | chr2A | 86.891 | 267 | 16 | 7 | 735 | 994 | 766712888 | 766713142 | 1.170000e-71 | 281.0 |
30 | TraesCS2D01G579100 | chr2A | 96.129 | 155 | 6 | 0 | 3504 | 3658 | 766716885 | 766717039 | 2.560000e-63 | 254.0 |
31 | TraesCS2D01G579100 | chr2A | 78.199 | 211 | 46 | 0 | 4289 | 4499 | 767479823 | 767479613 | 9.660000e-28 | 135.0 |
32 | TraesCS2D01G579100 | chr2A | 92.647 | 68 | 4 | 1 | 643 | 709 | 766712826 | 766712893 | 4.560000e-16 | 97.1 |
33 | TraesCS2D01G579100 | chr2A | 95.349 | 43 | 2 | 0 | 3903 | 3945 | 727612544 | 727612586 | 9.940000e-08 | 69.4 |
34 | TraesCS2D01G579100 | chr2A | 87.931 | 58 | 2 | 1 | 2450 | 2502 | 767138385 | 767138442 | 4.620000e-06 | 63.9 |
35 | TraesCS2D01G579100 | chr2B | 88.500 | 600 | 32 | 19 | 303 | 890 | 799968306 | 799968880 | 0.000000e+00 | 691.0 |
36 | TraesCS2D01G579100 | chr2B | 85.246 | 610 | 72 | 10 | 2519 | 3128 | 799352727 | 799352136 | 3.660000e-171 | 612.0 |
37 | TraesCS2D01G579100 | chr2B | 78.737 | 649 | 113 | 9 | 3875 | 4499 | 799285177 | 799284530 | 1.430000e-110 | 411.0 |
38 | TraesCS2D01G579100 | chr2B | 83.441 | 465 | 41 | 21 | 1611 | 2070 | 653014166 | 653013733 | 3.100000e-107 | 399.0 |
39 | TraesCS2D01G579100 | chr2B | 86.034 | 179 | 16 | 3 | 1 | 179 | 799959226 | 799959395 | 3.400000e-42 | 183.0 |
40 | TraesCS2D01G579100 | chr2B | 93.243 | 74 | 5 | 0 | 3585 | 3658 | 799286206 | 799286133 | 5.860000e-20 | 110.0 |
41 | TraesCS2D01G579100 | chrUn | 89.737 | 380 | 31 | 6 | 1611 | 1986 | 18146318 | 18145943 | 3.880000e-131 | 479.0 |
42 | TraesCS2D01G579100 | chrUn | 81.773 | 406 | 55 | 11 | 2755 | 3154 | 31530436 | 31530044 | 6.910000e-84 | 322.0 |
43 | TraesCS2D01G579100 | chr5A | 82.729 | 469 | 50 | 22 | 1627 | 2091 | 691790448 | 691790007 | 6.720000e-104 | 388.0 |
44 | TraesCS2D01G579100 | chr4A | 82.723 | 382 | 37 | 14 | 1713 | 2091 | 708036117 | 708035762 | 4.160000e-81 | 313.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G579100 | chr2D | 641609531 | 641615060 | 5529 | False | 3443.266667 | 10213 | 100.000000 | 1 | 5530 | 3 | chr2D.!!$F5 | 5529 |
1 | TraesCS2D01G579100 | chr2D | 642240409 | 642240990 | 581 | True | 544.000000 | 544 | 83.500000 | 2529 | 3128 | 1 | chr2D.!!$R2 | 599 |
2 | TraesCS2D01G579100 | chr2D | 642414429 | 642418273 | 3844 | False | 346.250000 | 676 | 81.519500 | 1013 | 4499 | 4 | chr2D.!!$F6 | 3486 |
3 | TraesCS2D01G579100 | chr2D | 641950815 | 641951440 | 625 | True | 290.666667 | 374 | 93.029333 | 1 | 881 | 3 | chr2D.!!$R4 | 880 |
4 | TraesCS2D01G579100 | chr2A | 766712448 | 766719346 | 6898 | False | 817.788889 | 2049 | 92.747556 | 10 | 5530 | 9 | chr2A.!!$F2 | 5520 |
5 | TraesCS2D01G579100 | chr2A | 767485359 | 767486138 | 779 | True | 647.000000 | 647 | 81.939000 | 2316 | 3129 | 1 | chr2A.!!$R2 | 813 |
6 | TraesCS2D01G579100 | chr2A | 767560114 | 767563151 | 3037 | False | 552.000000 | 660 | 80.904000 | 2316 | 4499 | 2 | chr2A.!!$F4 | 2183 |
7 | TraesCS2D01G579100 | chr2A | 767138385 | 767139822 | 1437 | False | 318.300000 | 606 | 83.964333 | 2450 | 3658 | 3 | chr2A.!!$F3 | 1208 |
8 | TraesCS2D01G579100 | chr2B | 799968306 | 799968880 | 574 | False | 691.000000 | 691 | 88.500000 | 303 | 890 | 1 | chr2B.!!$F2 | 587 |
9 | TraesCS2D01G579100 | chr2B | 799352136 | 799352727 | 591 | True | 612.000000 | 612 | 85.246000 | 2519 | 3128 | 1 | chr2B.!!$R2 | 609 |
10 | TraesCS2D01G579100 | chr2B | 799284530 | 799286206 | 1676 | True | 260.500000 | 411 | 85.990000 | 3585 | 4499 | 2 | chr2B.!!$R3 | 914 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
413 | 414 | 0.252197 | AGATGTTAACCCCAGGACGC | 59.748 | 55.0 | 2.48 | 0.00 | 0.00 | 5.19 | F |
1090 | 1175 | 0.590732 | CGATTTGCTGCGGAATGAGC | 60.591 | 55.0 | 0.00 | 0.00 | 35.65 | 4.26 | F |
1400 | 1497 | 0.179111 | TCCAGAAGCATAAGGACGCG | 60.179 | 55.0 | 3.53 | 3.53 | 0.00 | 6.01 | F |
1557 | 1660 | 0.247460 | TCGTCCATGCTCTGGTCTTG | 59.753 | 55.0 | 5.89 | 0.00 | 46.08 | 3.02 | F |
2914 | 3198 | 0.250640 | AGCTTGAAGTGGCCACTCTG | 60.251 | 55.0 | 37.75 | 25.81 | 41.58 | 3.35 | F |
3689 | 5585 | 0.514255 | CGAGTGTGTCACTGCATTGG | 59.486 | 55.0 | 7.14 | 0.00 | 45.44 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1216 | 1313 | 0.879090 | GGAACAAGGTAAGGCCAACG | 59.121 | 55.000 | 5.01 | 0.0 | 40.61 | 4.10 | R |
2850 | 3134 | 1.483827 | TGAGTAGATCTGCAAGGCCTG | 59.516 | 52.381 | 5.69 | 1.1 | 0.00 | 4.85 | R |
3399 | 3877 | 0.320771 | GGGAGCGTGTGTCAGAACAT | 60.321 | 55.000 | 0.00 | 0.0 | 37.81 | 2.71 | R |
3412 | 3890 | 0.824109 | TGAACTACATCAGGGGAGCG | 59.176 | 55.000 | 0.00 | 0.0 | 0.00 | 5.03 | R |
4511 | 7231 | 0.032615 | ACTAGCCACAGAGAGAGGGG | 60.033 | 60.000 | 0.00 | 0.0 | 0.00 | 4.79 | R |
4719 | 7442 | 0.250295 | CCCAGCCAGTTCGACTCAAA | 60.250 | 55.000 | 0.00 | 0.0 | 0.00 | 2.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
99 | 100 | 2.834549 | AGTAGTAGCAGCACTGATGGTT | 59.165 | 45.455 | 4.02 | 0.00 | 33.06 | 3.67 |
152 | 153 | 2.005960 | CTCGCTACGGTTGAGGAGGG | 62.006 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
155 | 156 | 1.517832 | CTACGGTTGAGGAGGGCAG | 59.482 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
166 | 167 | 2.500098 | GAGGAGGGCAGTAACACATACA | 59.500 | 50.000 | 0.00 | 0.00 | 36.94 | 2.29 |
187 | 188 | 9.985730 | CATACATACCTAATTTTAACCGGTCTA | 57.014 | 33.333 | 8.04 | 0.00 | 0.00 | 2.59 |
228 | 229 | 2.104451 | CCTGCAGAGGCTTATCACTGAT | 59.896 | 50.000 | 17.39 | 0.00 | 41.91 | 2.90 |
256 | 257 | 1.959985 | CGCTGTCCCTCTAGTGATGAT | 59.040 | 52.381 | 0.00 | 0.00 | 0.00 | 2.45 |
271 | 272 | 2.522836 | ATGATCCTCATCACTGACGC | 57.477 | 50.000 | 0.00 | 0.00 | 42.05 | 5.19 |
272 | 273 | 1.185315 | TGATCCTCATCACTGACGCA | 58.815 | 50.000 | 0.00 | 0.00 | 33.80 | 5.24 |
311 | 312 | 3.919216 | GTGATGAGTAGTCACTTGTGCT | 58.081 | 45.455 | 1.37 | 0.25 | 42.04 | 4.40 |
408 | 409 | 5.188751 | AGAAGAGAAGAGATGTTAACCCCAG | 59.811 | 44.000 | 2.48 | 0.00 | 0.00 | 4.45 |
410 | 411 | 3.775316 | GAGAAGAGATGTTAACCCCAGGA | 59.225 | 47.826 | 2.48 | 0.00 | 0.00 | 3.86 |
411 | 412 | 3.519913 | AGAAGAGATGTTAACCCCAGGAC | 59.480 | 47.826 | 2.48 | 0.00 | 0.00 | 3.85 |
412 | 413 | 1.831736 | AGAGATGTTAACCCCAGGACG | 59.168 | 52.381 | 2.48 | 0.00 | 0.00 | 4.79 |
413 | 414 | 0.252197 | AGATGTTAACCCCAGGACGC | 59.748 | 55.000 | 2.48 | 0.00 | 0.00 | 5.19 |
548 | 557 | 2.414559 | CGCGGGTAGAAAAGAGTTACGA | 60.415 | 50.000 | 0.00 | 0.00 | 0.00 | 3.43 |
563 | 572 | 1.199615 | TACGAAGTGATGCCATGGGA | 58.800 | 50.000 | 15.13 | 12.25 | 45.73 | 4.37 |
565 | 574 | 1.064463 | ACGAAGTGATGCCATGGGAAT | 60.064 | 47.619 | 11.10 | 0.00 | 42.51 | 3.01 |
566 | 575 | 1.335810 | CGAAGTGATGCCATGGGAATG | 59.664 | 52.381 | 11.10 | 0.00 | 0.00 | 2.67 |
567 | 576 | 2.381911 | GAAGTGATGCCATGGGAATGT | 58.618 | 47.619 | 11.10 | 0.00 | 0.00 | 2.71 |
568 | 577 | 1.771565 | AGTGATGCCATGGGAATGTG | 58.228 | 50.000 | 11.10 | 0.00 | 0.00 | 3.21 |
584 | 594 | 7.835822 | TGGGAATGTGAACAACAAAATATAGG | 58.164 | 34.615 | 0.00 | 0.00 | 43.61 | 2.57 |
627 | 637 | 4.106909 | TGTATGTCACGGCATAACTAACG | 58.893 | 43.478 | 0.00 | 0.00 | 33.67 | 3.18 |
695 | 705 | 9.874205 | TGATTTTTGGATAAAATAGGAAAGCAG | 57.126 | 29.630 | 0.00 | 0.00 | 35.82 | 4.24 |
703 | 713 | 4.813750 | AAATAGGAAAGCAGCTGCATTT | 57.186 | 36.364 | 38.24 | 31.12 | 45.16 | 2.32 |
752 | 764 | 7.659652 | TTTTTCTTTTTCTTTTCGAGGCAAA | 57.340 | 28.000 | 0.00 | 0.00 | 0.00 | 3.68 |
829 | 841 | 5.582665 | GCCATACTTACTTGTGGAGAAGAAG | 59.417 | 44.000 | 0.00 | 0.00 | 35.29 | 2.85 |
830 | 842 | 6.574465 | GCCATACTTACTTGTGGAGAAGAAGA | 60.574 | 42.308 | 0.00 | 0.00 | 33.39 | 2.87 |
831 | 843 | 7.386851 | CCATACTTACTTGTGGAGAAGAAGAA | 58.613 | 38.462 | 0.00 | 0.00 | 33.39 | 2.52 |
849 | 861 | 2.092914 | AGAATAGGTTCTTCTTGGGCCG | 60.093 | 50.000 | 0.00 | 0.00 | 41.92 | 6.13 |
890 | 902 | 2.037136 | CCGGACTGAGCTTGCTTGG | 61.037 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
891 | 903 | 2.037136 | CGGACTGAGCTTGCTTGGG | 61.037 | 63.158 | 0.00 | 0.00 | 0.00 | 4.12 |
892 | 904 | 1.073897 | GGACTGAGCTTGCTTGGGT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
895 | 907 | 1.975407 | CTGAGCTTGCTTGGGTGGG | 60.975 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
896 | 908 | 2.416107 | CTGAGCTTGCTTGGGTGGGA | 62.416 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
897 | 909 | 1.973812 | GAGCTTGCTTGGGTGGGAC | 60.974 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
898 | 910 | 2.203480 | GCTTGCTTGGGTGGGACA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
899 | 911 | 2.270986 | GCTTGCTTGGGTGGGACAG | 61.271 | 63.158 | 0.00 | 0.00 | 41.80 | 3.51 |
931 | 943 | 3.502123 | ATATACAACCATCCCAACCCG | 57.498 | 47.619 | 0.00 | 0.00 | 0.00 | 5.28 |
960 | 972 | 3.877508 | ACATCGCTATTGAAACCCTAAGC | 59.122 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
970 | 982 | 2.789409 | AACCCTAAGCTGCTAGGTTG | 57.211 | 50.000 | 23.12 | 12.33 | 36.49 | 3.77 |
977 | 989 | 1.671054 | GCTGCTAGGTTGTTCGCCA | 60.671 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
994 | 1006 | 2.533942 | CGCCACAAAGAAAAAGGAAACG | 59.466 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
995 | 1007 | 3.517602 | GCCACAAAGAAAAAGGAAACGT | 58.482 | 40.909 | 0.00 | 0.00 | 0.00 | 3.99 |
997 | 1009 | 4.490743 | CCACAAAGAAAAAGGAAACGTGT | 58.509 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
1090 | 1175 | 0.590732 | CGATTTGCTGCGGAATGAGC | 60.591 | 55.000 | 0.00 | 0.00 | 35.65 | 4.26 |
1143 | 1231 | 5.163364 | TGGAAAGAAGGCTTATCTAGAGCAG | 60.163 | 44.000 | 0.00 | 0.00 | 41.89 | 4.24 |
1159 | 1247 | 2.873472 | GAGCAGCATTCTGATGGAAGAG | 59.127 | 50.000 | 0.00 | 0.00 | 42.95 | 2.85 |
1163 | 1251 | 1.674962 | GCATTCTGATGGAAGAGCACC | 59.325 | 52.381 | 0.00 | 0.00 | 38.19 | 5.01 |
1164 | 1252 | 2.683152 | GCATTCTGATGGAAGAGCACCT | 60.683 | 50.000 | 0.00 | 0.00 | 38.19 | 4.00 |
1173 | 1261 | 0.871057 | GAAGAGCACCTCAACTGCAC | 59.129 | 55.000 | 0.00 | 0.00 | 37.08 | 4.57 |
1242 | 1339 | 3.010420 | GCCTTACCTTGTTCCTCATCAC | 58.990 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1350 | 1447 | 4.815308 | CCATTGGAGAAGCTCAGATTACTG | 59.185 | 45.833 | 0.00 | 0.00 | 44.66 | 2.74 |
1351 | 1448 | 3.533606 | TGGAGAAGCTCAGATTACTGC | 57.466 | 47.619 | 0.00 | 0.00 | 43.17 | 4.40 |
1355 | 1452 | 4.202243 | GGAGAAGCTCAGATTACTGCATCT | 60.202 | 45.833 | 0.00 | 0.00 | 43.17 | 2.90 |
1367 | 1464 | 5.689383 | TTACTGCATCTCTTGTCCAAAAC | 57.311 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
1400 | 1497 | 0.179111 | TCCAGAAGCATAAGGACGCG | 60.179 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
1401 | 1498 | 1.638467 | CAGAAGCATAAGGACGCGC | 59.362 | 57.895 | 5.73 | 0.00 | 0.00 | 6.86 |
1536 | 1639 | 6.472808 | GCTTCCACGACATAAGTAAGTTAGAG | 59.527 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
1547 | 1650 | 4.745649 | AGTAAGTTAGAGTTCGTCCATGC | 58.254 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
1549 | 1652 | 3.512033 | AGTTAGAGTTCGTCCATGCTC | 57.488 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1554 | 1657 | 0.247736 | AGTTCGTCCATGCTCTGGTC | 59.752 | 55.000 | 5.89 | 0.52 | 46.08 | 4.02 |
1555 | 1658 | 0.247736 | GTTCGTCCATGCTCTGGTCT | 59.752 | 55.000 | 5.89 | 0.00 | 46.08 | 3.85 |
1557 | 1660 | 0.247460 | TCGTCCATGCTCTGGTCTTG | 59.753 | 55.000 | 5.89 | 0.00 | 46.08 | 3.02 |
1563 | 1666 | 3.776969 | TCCATGCTCTGGTCTTGTTATCT | 59.223 | 43.478 | 5.89 | 0.00 | 46.08 | 1.98 |
1566 | 1669 | 5.366460 | CATGCTCTGGTCTTGTTATCTCAT | 58.634 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1573 | 1676 | 9.126151 | CTCTGGTCTTGTTATCTCATCTAACTA | 57.874 | 37.037 | 0.00 | 0.00 | 31.71 | 2.24 |
1626 | 1761 | 4.530094 | TCCTTAAAATGCTTCATACGCG | 57.470 | 40.909 | 3.53 | 3.53 | 0.00 | 6.01 |
1637 | 1772 | 1.720805 | TCATACGCGTGCAGAATTGT | 58.279 | 45.000 | 24.59 | 0.00 | 0.00 | 2.71 |
1657 | 1792 | 2.232452 | GTCTAGTGGCTGCAGAGAAAGA | 59.768 | 50.000 | 20.43 | 9.86 | 0.00 | 2.52 |
1664 | 1799 | 2.991866 | GGCTGCAGAGAAAGAAAAATGC | 59.008 | 45.455 | 20.43 | 0.00 | 0.00 | 3.56 |
1668 | 1803 | 5.163982 | GCTGCAGAGAAAGAAAAATGCATTC | 60.164 | 40.000 | 20.43 | 0.77 | 42.24 | 2.67 |
1674 | 1809 | 9.635520 | CAGAGAAAGAAAAATGCATTCAGTAAT | 57.364 | 29.630 | 13.38 | 0.00 | 0.00 | 1.89 |
1688 | 1823 | 6.963805 | GCATTCAGTAATTTCAGCAACTAGTC | 59.036 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
1692 | 1827 | 7.168219 | TCAGTAATTTCAGCAACTAGTCCAAT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1757 | 1892 | 2.027377 | GCTAGGCATCTATCCAGCACAT | 60.027 | 50.000 | 0.00 | 0.00 | 32.10 | 3.21 |
1769 | 1904 | 4.025040 | TCCAGCACATCAGAACAAGAAT | 57.975 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1771 | 1906 | 4.937620 | TCCAGCACATCAGAACAAGAATAC | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
1773 | 1908 | 5.163784 | CCAGCACATCAGAACAAGAATACTG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1927 | 2063 | 7.094420 | ACAGCAGCAATAAATGTTGTACATACA | 60.094 | 33.333 | 11.53 | 11.53 | 41.84 | 2.29 |
1928 | 2064 | 7.916977 | CAGCAGCAATAAATGTTGTACATACAT | 59.083 | 33.333 | 14.20 | 14.20 | 41.84 | 2.29 |
1929 | 2065 | 8.469200 | AGCAGCAATAAATGTTGTACATACATT | 58.531 | 29.630 | 20.93 | 20.93 | 45.49 | 2.71 |
1950 | 2092 | 7.231607 | ACATTAGAAAACTTGTTGTATACGCG | 58.768 | 34.615 | 3.53 | 3.53 | 0.00 | 6.01 |
1978 | 2120 | 3.354089 | AAACAACATTGCAGAGAACCG | 57.646 | 42.857 | 0.00 | 0.00 | 0.00 | 4.44 |
2005 | 2147 | 5.458041 | AACTTCCATTCCACAAACATGAG | 57.542 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
2015 | 2157 | 7.912056 | TTCCACAAACATGAGAAGAGATAAG | 57.088 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2019 | 2161 | 7.824289 | CCACAAACATGAGAAGAGATAAGGTAA | 59.176 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
2089 | 2231 | 0.478072 | TGTTGCCATCCTTCCACAGT | 59.522 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2090 | 2232 | 1.702401 | TGTTGCCATCCTTCCACAGTA | 59.298 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2097 | 2274 | 1.991121 | TCCTTCCACAGTACACGAGT | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2107 | 2284 | 3.043586 | CAGTACACGAGTCACTTGTCAC | 58.956 | 50.000 | 0.00 | 0.00 | 33.19 | 3.67 |
2220 | 2398 | 8.125448 | GGAATTAGTGCTCATGTCAGAAATTAC | 58.875 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
2280 | 2472 | 2.927014 | GCGTGTCAGAGTTAGGAACAGG | 60.927 | 54.545 | 0.00 | 0.00 | 0.00 | 4.00 |
2287 | 2479 | 5.998363 | GTCAGAGTTAGGAACAGGTCAATTT | 59.002 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2356 | 2567 | 2.149973 | TGCATCTCAGAGGACTAGCA | 57.850 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
2377 | 2588 | 3.569250 | AACCGTACCATTCAAACATGC | 57.431 | 42.857 | 0.00 | 0.00 | 0.00 | 4.06 |
2390 | 2601 | 8.028354 | CCATTCAAACATGCAGACAATAAGTTA | 58.972 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2421 | 2632 | 3.025262 | AGTAGCTGCTGGAAGGTAGTAC | 58.975 | 50.000 | 13.43 | 0.00 | 33.17 | 2.73 |
2457 | 2668 | 2.158957 | TCTGGACAGTGAAGTTGTGGAC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2556 | 2838 | 2.838736 | CACACTAGTGCACAGTTTCCT | 58.161 | 47.619 | 22.90 | 0.00 | 39.21 | 3.36 |
2582 | 2864 | 2.552315 | GGATGTTTGGCTTTGAAGTCGA | 59.448 | 45.455 | 0.00 | 0.00 | 31.96 | 4.20 |
2586 | 2868 | 3.250762 | TGTTTGGCTTTGAAGTCGATGAG | 59.749 | 43.478 | 0.00 | 0.00 | 31.96 | 2.90 |
2618 | 2900 | 3.804325 | CCTGTGTGCTCCTATGTATTTCG | 59.196 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
2810 | 3094 | 5.209659 | CTGTCTCCTATGTACTTTACCCCT | 58.790 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
2815 | 3099 | 5.095809 | TCCTATGTACTTTACCCCTTGTGT | 58.904 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
2870 | 3154 | 1.483827 | CAGGCCTTGCAGATCTACTCA | 59.516 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2914 | 3198 | 0.250640 | AGCTTGAAGTGGCCACTCTG | 60.251 | 55.000 | 37.75 | 25.81 | 41.58 | 3.35 |
2984 | 3268 | 2.091541 | CTTCTCTTCTCTCGCTCCAGT | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3154 | 3547 | 5.252547 | TCAGCAGCATTGGTTGATTAGTAA | 58.747 | 37.500 | 0.00 | 0.00 | 31.36 | 2.24 |
3176 | 3569 | 5.476752 | AAGCAGATAACAAATTCGCTCTC | 57.523 | 39.130 | 0.00 | 0.00 | 0.00 | 3.20 |
3297 | 3775 | 3.697542 | TGCAAGCATCTTCAATACTGCAT | 59.302 | 39.130 | 0.00 | 0.00 | 37.09 | 3.96 |
3399 | 3877 | 5.012458 | ACAGCAGCAATATCATAGGCTTCTA | 59.988 | 40.000 | 0.00 | 0.00 | 33.60 | 2.10 |
3411 | 3889 | 5.422012 | TCATAGGCTTCTATGTTCTGACACA | 59.578 | 40.000 | 11.63 | 0.00 | 46.40 | 3.72 |
3412 | 3890 | 3.931578 | AGGCTTCTATGTTCTGACACAC | 58.068 | 45.455 | 0.00 | 0.00 | 38.91 | 3.82 |
3511 | 5194 | 3.319755 | GGTGTCAAGCAATGGTTTCATG | 58.680 | 45.455 | 0.00 | 0.00 | 33.18 | 3.07 |
3552 | 5235 | 4.937620 | CAGTACTATGCCAATGTGTCTGTT | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3658 | 5374 | 8.362639 | CAATCAATAAGACCATTAATTCCTGGG | 58.637 | 37.037 | 10.16 | 0.00 | 36.82 | 4.45 |
3660 | 5376 | 6.068498 | TCAATAAGACCATTAATTCCTGGGGT | 60.068 | 38.462 | 10.16 | 0.00 | 36.82 | 4.95 |
3662 | 5378 | 3.981212 | AGACCATTAATTCCTGGGGTTG | 58.019 | 45.455 | 10.16 | 0.00 | 36.82 | 3.77 |
3663 | 5379 | 3.596046 | AGACCATTAATTCCTGGGGTTGA | 59.404 | 43.478 | 10.16 | 0.00 | 36.82 | 3.18 |
3665 | 5381 | 3.076785 | ACCATTAATTCCTGGGGTTGACA | 59.923 | 43.478 | 10.16 | 0.00 | 36.82 | 3.58 |
3667 | 5383 | 4.344104 | CATTAATTCCTGGGGTTGACACT | 58.656 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
3689 | 5585 | 0.514255 | CGAGTGTGTCACTGCATTGG | 59.486 | 55.000 | 7.14 | 0.00 | 45.44 | 3.16 |
3791 | 5852 | 4.571984 | TGTCGATGATGGTTAAGCAATCAG | 59.428 | 41.667 | 12.00 | 7.81 | 40.61 | 2.90 |
3820 | 5882 | 5.772825 | TTCAGATCCAGTGGTTTTTCTTG | 57.227 | 39.130 | 9.54 | 0.23 | 0.00 | 3.02 |
3846 | 5923 | 1.883275 | CTCTCTCTCTCCGTGTGTGTT | 59.117 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
3915 | 6614 | 2.552315 | TGTTGTTCGCAGGATCCTTTTC | 59.448 | 45.455 | 13.00 | 3.34 | 0.00 | 2.29 |
3949 | 6648 | 1.757118 | CCCTTCTCGTGCTATTCTGGA | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3971 | 6670 | 4.336889 | TGAGTACCCTGTTGACTTTGAG | 57.663 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
3998 | 6697 | 9.232473 | GTTGAACTAAGGATAAAAGATGGAAGT | 57.768 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
4014 | 6713 | 7.911651 | AGATGGAAGTGAGTCTCAAGATAAAA | 58.088 | 34.615 | 3.51 | 0.00 | 0.00 | 1.52 |
4146 | 6845 | 5.989168 | CAGGCCACAATATTATCAGTTCGTA | 59.011 | 40.000 | 5.01 | 0.00 | 0.00 | 3.43 |
4171 | 6870 | 1.454201 | GGAGGGCTGTCTACTTTTGC | 58.546 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
4200 | 6899 | 2.095617 | GGGCAAATTGCTTGTTCATTGC | 60.096 | 45.455 | 18.04 | 0.00 | 44.28 | 3.56 |
4303 | 7023 | 4.473444 | AGGAATGTTGTCACTGTGGAATT | 58.527 | 39.130 | 8.11 | 1.66 | 0.00 | 2.17 |
4304 | 7024 | 4.279169 | AGGAATGTTGTCACTGTGGAATTG | 59.721 | 41.667 | 8.11 | 0.00 | 0.00 | 2.32 |
4350 | 7070 | 8.708742 | TCATAAAAAGTTACACAGAATCTCGTG | 58.291 | 33.333 | 9.98 | 9.98 | 39.10 | 4.35 |
4351 | 7071 | 5.924475 | AAAAGTTACACAGAATCTCGTGG | 57.076 | 39.130 | 14.14 | 0.00 | 37.45 | 4.94 |
4381 | 7101 | 0.731417 | CAGGCTGAGCTTGAATTCGG | 59.269 | 55.000 | 11.48 | 0.00 | 37.87 | 4.30 |
4406 | 7126 | 1.003116 | CGGCATTGTCAGATAAGCAGC | 60.003 | 52.381 | 0.00 | 0.00 | 0.00 | 5.25 |
4413 | 7133 | 2.305635 | TGTCAGATAAGCAGCCAGGAAA | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
4463 | 7183 | 2.027192 | TGTCATTGCTTGGTCCCTACTC | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4469 | 7189 | 1.835494 | CTTGGTCCCTACTCGTGAGA | 58.165 | 55.000 | 3.44 | 0.00 | 39.12 | 3.27 |
4511 | 7231 | 2.772515 | AGAGGGGTATGCCTTCACTTAC | 59.227 | 50.000 | 0.00 | 0.00 | 34.45 | 2.34 |
4565 | 7285 | 4.695928 | GTGGGGTGATCAAACTTAGAACTC | 59.304 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
4566 | 7286 | 3.933332 | GGGGTGATCAAACTTAGAACTCG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
4567 | 7287 | 4.562963 | GGGGTGATCAAACTTAGAACTCGT | 60.563 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
4568 | 7288 | 4.389077 | GGGTGATCAAACTTAGAACTCGTG | 59.611 | 45.833 | 0.00 | 0.00 | 0.00 | 4.35 |
4586 | 7309 | 5.989777 | ACTCGTGCTTGTGTAATCTAACTTT | 59.010 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4587 | 7310 | 6.073765 | ACTCGTGCTTGTGTAATCTAACTTTG | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
4589 | 7312 | 6.480651 | TCGTGCTTGTGTAATCTAACTTTGAA | 59.519 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
4590 | 7313 | 6.792250 | CGTGCTTGTGTAATCTAACTTTGAAG | 59.208 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4592 | 7315 | 8.770828 | GTGCTTGTGTAATCTAACTTTGAAGTA | 58.229 | 33.333 | 0.00 | 0.00 | 38.57 | 2.24 |
4593 | 7316 | 8.988934 | TGCTTGTGTAATCTAACTTTGAAGTAG | 58.011 | 33.333 | 0.00 | 0.00 | 38.57 | 2.57 |
4594 | 7317 | 9.204570 | GCTTGTGTAATCTAACTTTGAAGTAGA | 57.795 | 33.333 | 0.00 | 2.15 | 38.57 | 2.59 |
4611 | 7334 | 5.407407 | AGTAGAGACCTATGTTGTGTTGG | 57.593 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
4618 | 7341 | 3.826157 | ACCTATGTTGTGTTGGGTGATTG | 59.174 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
4648 | 7371 | 8.251721 | GTGTCATCAAACTAAGTAGACCTATGT | 58.748 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
4768 | 7491 | 9.000486 | GTGCCTTTTATTATGTAATACTCCCTC | 58.000 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
4789 | 7512 | 3.077359 | CTGTCTGGTTGTCCATTTCTCC | 58.923 | 50.000 | 0.00 | 0.00 | 43.43 | 3.71 |
4790 | 7513 | 2.076863 | GTCTGGTTGTCCATTTCTCCG | 58.923 | 52.381 | 0.00 | 0.00 | 43.43 | 4.63 |
4791 | 7514 | 1.974957 | TCTGGTTGTCCATTTCTCCGA | 59.025 | 47.619 | 0.00 | 0.00 | 43.43 | 4.55 |
4792 | 7515 | 2.076863 | CTGGTTGTCCATTTCTCCGAC | 58.923 | 52.381 | 0.00 | 0.00 | 43.43 | 4.79 |
4793 | 7516 | 1.418264 | TGGTTGTCCATTTCTCCGACA | 59.582 | 47.619 | 0.00 | 0.00 | 39.03 | 4.35 |
4794 | 7517 | 2.158740 | TGGTTGTCCATTTCTCCGACAA | 60.159 | 45.455 | 0.00 | 0.00 | 42.60 | 3.18 |
4795 | 7518 | 2.484264 | GGTTGTCCATTTCTCCGACAAG | 59.516 | 50.000 | 2.29 | 0.00 | 44.72 | 3.16 |
4796 | 7519 | 3.139077 | GTTGTCCATTTCTCCGACAAGT | 58.861 | 45.455 | 2.29 | 0.00 | 44.72 | 3.16 |
4797 | 7520 | 4.312443 | GTTGTCCATTTCTCCGACAAGTA | 58.688 | 43.478 | 2.29 | 0.00 | 44.72 | 2.24 |
4798 | 7521 | 4.819105 | TGTCCATTTCTCCGACAAGTAT | 57.181 | 40.909 | 0.00 | 0.00 | 33.72 | 2.12 |
4799 | 7522 | 5.160607 | TGTCCATTTCTCCGACAAGTATT | 57.839 | 39.130 | 0.00 | 0.00 | 33.72 | 1.89 |
4814 | 7537 | 5.964958 | CAAGTATTGTCTGGTTGTCCATT | 57.035 | 39.130 | 0.00 | 0.00 | 41.43 | 3.16 |
4815 | 7538 | 6.331369 | CAAGTATTGTCTGGTTGTCCATTT | 57.669 | 37.500 | 0.00 | 0.00 | 41.43 | 2.32 |
4816 | 7539 | 6.381801 | CAAGTATTGTCTGGTTGTCCATTTC | 58.618 | 40.000 | 0.00 | 0.00 | 41.43 | 2.17 |
4817 | 7540 | 5.880901 | AGTATTGTCTGGTTGTCCATTTCT | 58.119 | 37.500 | 0.00 | 0.00 | 43.43 | 2.52 |
4818 | 7541 | 5.940470 | AGTATTGTCTGGTTGTCCATTTCTC | 59.060 | 40.000 | 0.00 | 0.00 | 43.43 | 2.87 |
4859 | 7582 | 6.270231 | AGTGGAGGGAGTATATAATTGTGGTC | 59.730 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
4862 | 7585 | 6.350277 | GGAGGGAGTATATAATTGTGGTCGAG | 60.350 | 46.154 | 0.00 | 0.00 | 0.00 | 4.04 |
5101 | 7826 | 1.200252 | CAGTACGACCTGACCTGACAG | 59.800 | 57.143 | 0.00 | 0.00 | 34.23 | 3.51 |
5214 | 7939 | 8.553459 | TTCTGAAGAAGAAGATGTGGAAATAC | 57.447 | 34.615 | 0.00 | 0.00 | 40.09 | 1.89 |
5215 | 7940 | 7.911651 | TCTGAAGAAGAAGATGTGGAAATACT | 58.088 | 34.615 | 0.00 | 0.00 | 29.54 | 2.12 |
5216 | 7941 | 9.035890 | TCTGAAGAAGAAGATGTGGAAATACTA | 57.964 | 33.333 | 0.00 | 0.00 | 29.54 | 1.82 |
5217 | 7942 | 9.829507 | CTGAAGAAGAAGATGTGGAAATACTAT | 57.170 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
5218 | 7943 | 9.823647 | TGAAGAAGAAGATGTGGAAATACTATC | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
5219 | 7944 | 9.267084 | GAAGAAGAAGATGTGGAAATACTATCC | 57.733 | 37.037 | 0.00 | 0.00 | 37.48 | 2.59 |
5220 | 7945 | 7.740805 | AGAAGAAGATGTGGAAATACTATCCC | 58.259 | 38.462 | 0.00 | 0.00 | 36.04 | 3.85 |
5250 | 8163 | 4.340950 | GGAAATTAAATCTCCATTGCCCGA | 59.659 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
5261 | 8174 | 6.303054 | TCTCCATTGCCCGAAAATATAATGA | 58.697 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5301 | 8303 | 2.879026 | AGGAAACGGAGCAAGAAGAAAC | 59.121 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
5309 | 8311 | 1.652012 | CAAGAAGAAACGGCGGCAA | 59.348 | 52.632 | 13.24 | 0.00 | 0.00 | 4.52 |
5346 | 8348 | 4.302455 | ACACGAGAGACAAACAGATCAAG | 58.698 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5355 | 8357 | 6.122277 | AGACAAACAGATCAAGAAAACCAGA | 58.878 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5356 | 8358 | 6.261826 | AGACAAACAGATCAAGAAAACCAGAG | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
5370 | 8372 | 5.917545 | AAACCAGAGAACCTAAAACCCTA | 57.082 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
5371 | 8373 | 5.500546 | AACCAGAGAACCTAAAACCCTAG | 57.499 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5385 | 8387 | 5.741962 | AAACCCTAGAGGACTAAAGTGAC | 57.258 | 43.478 | 0.00 | 0.00 | 39.89 | 3.67 |
5425 | 8427 | 0.250513 | GAAATCTCCCAGGAGCACGT | 59.749 | 55.000 | 8.95 | 0.00 | 41.71 | 4.49 |
5428 | 8430 | 0.689080 | ATCTCCCAGGAGCACGTGAT | 60.689 | 55.000 | 22.23 | 14.87 | 41.71 | 3.06 |
5461 | 8463 | 7.749126 | GGGATTAATGACTGAAACGTTTAACTG | 59.251 | 37.037 | 14.65 | 9.07 | 0.00 | 3.16 |
5480 | 8482 | 6.968131 | AACTGCAAAAAGAGAAGGAAAAAC | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
5483 | 8485 | 6.934083 | ACTGCAAAAAGAGAAGGAAAAACAAA | 59.066 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
5484 | 8486 | 7.443879 | ACTGCAAAAAGAGAAGGAAAAACAAAA | 59.556 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 6.690957 | TCATTGATGTTTGTTCAAACTTCGTC | 59.309 | 34.615 | 24.86 | 18.38 | 38.75 | 4.20 |
99 | 100 | 8.506437 | GTTCATCACAGACTAATGTCAAAATGA | 58.494 | 33.333 | 0.00 | 0.00 | 45.20 | 2.57 |
187 | 188 | 3.326880 | AGGACTTCCAAGACGGTTAACAT | 59.673 | 43.478 | 8.10 | 0.00 | 38.89 | 2.71 |
256 | 257 | 0.176449 | CCATGCGTCAGTGATGAGGA | 59.824 | 55.000 | 16.74 | 3.33 | 0.00 | 3.71 |
271 | 272 | 3.134623 | TCACTAACTGCCCTATGACCATG | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
272 | 273 | 3.384168 | TCACTAACTGCCCTATGACCAT | 58.616 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
310 | 311 | 6.270064 | CCCAACACTACTACAAAACCAAAAG | 58.730 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
311 | 312 | 5.127356 | CCCCAACACTACTACAAAACCAAAA | 59.873 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
412 | 413 | 4.547905 | TACTACAGAGCCGCGCGC | 62.548 | 66.667 | 27.36 | 23.91 | 37.98 | 6.86 |
413 | 414 | 2.352457 | CTACTACAGAGCCGCGCG | 60.352 | 66.667 | 25.67 | 25.67 | 0.00 | 6.86 |
548 | 557 | 2.104967 | CACATTCCCATGGCATCACTT | 58.895 | 47.619 | 6.09 | 0.00 | 34.27 | 3.16 |
609 | 619 | 3.183754 | CATCGTTAGTTATGCCGTGACA | 58.816 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
616 | 626 | 8.794406 | CCACATTAAAAACATCGTTAGTTATGC | 58.206 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
759 | 771 | 0.037160 | ATTAACGTCCGTGCCCCTTT | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
772 | 784 | 2.893404 | CCGGCCCGTCCATTAACG | 60.893 | 66.667 | 0.85 | 0.00 | 42.24 | 3.18 |
829 | 841 | 2.289565 | CGGCCCAAGAAGAACCTATTC | 58.710 | 52.381 | 0.00 | 0.00 | 34.78 | 1.75 |
830 | 842 | 1.064685 | CCGGCCCAAGAAGAACCTATT | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
831 | 843 | 0.546598 | CCGGCCCAAGAAGAACCTAT | 59.453 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
849 | 861 | 3.008408 | TCTCTCCTCGGAGGGACC | 58.992 | 66.667 | 23.39 | 0.00 | 45.85 | 4.46 |
891 | 903 | 8.482943 | TGTATATATAATATGGTGCTGTCCCAC | 58.517 | 37.037 | 0.00 | 0.00 | 34.07 | 4.61 |
892 | 904 | 8.616799 | TGTATATATAATATGGTGCTGTCCCA | 57.383 | 34.615 | 0.00 | 0.00 | 36.16 | 4.37 |
895 | 907 | 9.884636 | TGGTTGTATATATAATATGGTGCTGTC | 57.115 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
899 | 911 | 9.284968 | GGGATGGTTGTATATATAATATGGTGC | 57.715 | 37.037 | 0.00 | 0.00 | 0.00 | 5.01 |
905 | 917 | 8.487848 | CGGGTTGGGATGGTTGTATATATAATA | 58.512 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
906 | 918 | 7.343357 | CGGGTTGGGATGGTTGTATATATAAT | 58.657 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
907 | 919 | 6.713276 | CGGGTTGGGATGGTTGTATATATAA | 58.287 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
908 | 920 | 5.338544 | GCGGGTTGGGATGGTTGTATATATA | 60.339 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
909 | 921 | 4.566907 | GCGGGTTGGGATGGTTGTATATAT | 60.567 | 45.833 | 0.00 | 0.00 | 0.00 | 0.86 |
930 | 942 | 4.969196 | ATAGCGATGTGGCCGGCG | 62.969 | 66.667 | 22.54 | 6.34 | 0.00 | 6.46 |
931 | 943 | 2.591715 | AATAGCGATGTGGCCGGC | 60.592 | 61.111 | 21.18 | 21.18 | 0.00 | 6.13 |
938 | 950 | 3.877508 | GCTTAGGGTTTCAATAGCGATGT | 59.122 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
944 | 956 | 5.059833 | CCTAGCAGCTTAGGGTTTCAATAG | 58.940 | 45.833 | 0.00 | 0.00 | 37.20 | 1.73 |
946 | 958 | 3.267031 | ACCTAGCAGCTTAGGGTTTCAAT | 59.733 | 43.478 | 14.67 | 0.00 | 43.76 | 2.57 |
960 | 972 | 0.602638 | TGTGGCGAACAACCTAGCAG | 60.603 | 55.000 | 0.00 | 0.00 | 35.24 | 4.24 |
970 | 982 | 3.430333 | TCCTTTTTCTTTGTGGCGAAC | 57.570 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
977 | 989 | 4.154556 | TCGACACGTTTCCTTTTTCTTTGT | 59.845 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1085 | 1170 | 2.765807 | CCCGGGACCTGAGCTCAT | 60.766 | 66.667 | 18.48 | 2.44 | 0.00 | 2.90 |
1143 | 1231 | 1.674962 | GGTGCTCTTCCATCAGAATGC | 59.325 | 52.381 | 0.00 | 0.00 | 35.59 | 3.56 |
1159 | 1247 | 2.959357 | GCTCGTGCAGTTGAGGTGC | 61.959 | 63.158 | 4.26 | 0.00 | 41.59 | 5.01 |
1163 | 1251 | 2.609825 | AACAGCTCGTGCAGTTGAG | 58.390 | 52.632 | 17.71 | 6.24 | 45.12 | 3.02 |
1164 | 1252 | 4.855105 | AACAGCTCGTGCAGTTGA | 57.145 | 50.000 | 17.71 | 0.00 | 45.12 | 3.18 |
1216 | 1313 | 0.879090 | GGAACAAGGTAAGGCCAACG | 59.121 | 55.000 | 5.01 | 0.00 | 40.61 | 4.10 |
1242 | 1339 | 1.528542 | TAGATCCACGGCCTCCTCG | 60.529 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
1350 | 1447 | 4.232221 | CACATGTTTTGGACAAGAGATGC | 58.768 | 43.478 | 11.10 | 0.00 | 42.62 | 3.91 |
1351 | 1448 | 4.232221 | GCACATGTTTTGGACAAGAGATG | 58.768 | 43.478 | 10.02 | 10.02 | 42.62 | 2.90 |
1355 | 1452 | 2.290367 | CTCGCACATGTTTTGGACAAGA | 59.710 | 45.455 | 0.00 | 0.00 | 42.62 | 3.02 |
1367 | 1464 | 1.521010 | CTGGAGAGGCTCGCACATG | 60.521 | 63.158 | 19.92 | 3.02 | 0.00 | 3.21 |
1401 | 1498 | 1.010350 | GCTTGAAGATGGCGATGCG | 60.010 | 57.895 | 0.00 | 0.00 | 0.00 | 4.73 |
1411 | 1508 | 2.230025 | CCTGAGAAGACTCGCTTGAAGA | 59.770 | 50.000 | 0.00 | 0.00 | 45.25 | 2.87 |
1518 | 1621 | 6.686253 | GGACGAACTCTAACTTACTTATGTCG | 59.314 | 42.308 | 0.00 | 0.00 | 0.00 | 4.35 |
1547 | 1650 | 8.006298 | AGTTAGATGAGATAACAAGACCAGAG | 57.994 | 38.462 | 0.00 | 0.00 | 35.92 | 3.35 |
1573 | 1676 | 7.007116 | AGGAAGGAAAGCTGACTAGAAAAATT | 58.993 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1575 | 1678 | 5.941788 | AGGAAGGAAAGCTGACTAGAAAAA | 58.058 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
1580 | 1715 | 6.000840 | AGAAAAAGGAAGGAAAGCTGACTAG | 58.999 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1582 | 1717 | 4.797743 | AGAAAAAGGAAGGAAAGCTGACT | 58.202 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1626 | 1761 | 2.417933 | CAGCCACTAGACAATTCTGCAC | 59.582 | 50.000 | 0.00 | 0.00 | 32.75 | 4.57 |
1637 | 1772 | 2.529632 | TCTTTCTCTGCAGCCACTAGA | 58.470 | 47.619 | 9.47 | 3.05 | 0.00 | 2.43 |
1657 | 1792 | 7.966246 | TGCTGAAATTACTGAATGCATTTTT | 57.034 | 28.000 | 14.33 | 8.74 | 0.00 | 1.94 |
1664 | 1799 | 7.119699 | TGGACTAGTTGCTGAAATTACTGAATG | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
1668 | 1803 | 6.801539 | TTGGACTAGTTGCTGAAATTACTG | 57.198 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
1674 | 1809 | 4.756642 | CACTCATTGGACTAGTTGCTGAAA | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1675 | 1810 | 4.040339 | TCACTCATTGGACTAGTTGCTGAA | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1688 | 1823 | 7.864108 | TTGTCTTATATGGTTCACTCATTGG | 57.136 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1692 | 1827 | 7.602644 | GTGTCTTTGTCTTATATGGTTCACTCA | 59.397 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
1757 | 1892 | 5.928839 | GTCTGAAGCAGTATTCTTGTTCTGA | 59.071 | 40.000 | 0.00 | 0.00 | 32.61 | 3.27 |
1769 | 1904 | 7.065085 | GCTGAAATCATAAAGTCTGAAGCAGTA | 59.935 | 37.037 | 0.00 | 0.00 | 32.61 | 2.74 |
1771 | 1906 | 6.256686 | GCTGAAATCATAAAGTCTGAAGCAG | 58.743 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
1773 | 1908 | 5.124457 | TGGCTGAAATCATAAAGTCTGAAGC | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1811 | 1947 | 9.726438 | ATTGCTAACTAACTGAAGAACTAATGT | 57.274 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
1854 | 1990 | 9.853177 | AATTGCTATTCCTATTGCTAACTAACT | 57.147 | 29.630 | 0.00 | 0.00 | 34.23 | 2.24 |
1927 | 2063 | 6.091713 | AGCGCGTATACAACAAGTTTTCTAAT | 59.908 | 34.615 | 8.43 | 0.00 | 0.00 | 1.73 |
1928 | 2064 | 5.406175 | AGCGCGTATACAACAAGTTTTCTAA | 59.594 | 36.000 | 8.43 | 0.00 | 0.00 | 2.10 |
1929 | 2065 | 4.925054 | AGCGCGTATACAACAAGTTTTCTA | 59.075 | 37.500 | 8.43 | 0.00 | 0.00 | 2.10 |
1931 | 2067 | 3.838550 | CAGCGCGTATACAACAAGTTTTC | 59.161 | 43.478 | 8.43 | 0.00 | 0.00 | 2.29 |
1932 | 2068 | 3.495377 | TCAGCGCGTATACAACAAGTTTT | 59.505 | 39.130 | 8.43 | 0.00 | 0.00 | 2.43 |
1934 | 2070 | 2.679450 | TCAGCGCGTATACAACAAGTT | 58.321 | 42.857 | 8.43 | 0.00 | 0.00 | 2.66 |
1936 | 2072 | 3.925688 | ATTCAGCGCGTATACAACAAG | 57.074 | 42.857 | 8.43 | 0.00 | 0.00 | 3.16 |
1950 | 2092 | 6.151691 | TCTCTGCAATGTTGTTTTATTCAGC | 58.848 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1978 | 2120 | 8.519526 | TCATGTTTGTGGAATGGAAGTTTATAC | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
2038 | 2180 | 6.707440 | TGTTTCTCTGCAATTTCTTGGTTA | 57.293 | 33.333 | 0.00 | 0.00 | 32.72 | 2.85 |
2089 | 2231 | 2.946990 | TCAGTGACAAGTGACTCGTGTA | 59.053 | 45.455 | 0.00 | 0.00 | 38.73 | 2.90 |
2090 | 2232 | 1.749063 | TCAGTGACAAGTGACTCGTGT | 59.251 | 47.619 | 0.00 | 0.00 | 41.08 | 4.49 |
2097 | 2274 | 3.561310 | GTGCTGAATTCAGTGACAAGTGA | 59.439 | 43.478 | 30.88 | 6.72 | 45.45 | 3.41 |
2107 | 2284 | 2.880268 | TGACAAGTGGTGCTGAATTCAG | 59.120 | 45.455 | 27.82 | 27.82 | 46.40 | 3.02 |
2117 | 2295 | 4.990426 | GGAATTTTGGAATGACAAGTGGTG | 59.010 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2220 | 2398 | 5.500234 | TCTAGGAATTGGTGTGGATTTCTG | 58.500 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2307 | 2499 | 7.050377 | TGATCAAGCAATACCCTTTTCTCTAG | 58.950 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
2356 | 2567 | 3.319405 | TGCATGTTTGAATGGTACGGTTT | 59.681 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
2390 | 2601 | 3.396276 | TCCAGCAGCTACTCCTACTAGAT | 59.604 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
2421 | 2632 | 7.872993 | TCACTGTCCAGACTTTACTTCATTAAG | 59.127 | 37.037 | 0.40 | 0.00 | 38.77 | 1.85 |
2457 | 2668 | 3.443045 | GCACTGTGGAATGGGCCG | 61.443 | 66.667 | 10.21 | 0.00 | 0.00 | 6.13 |
2502 | 2720 | 7.821134 | AGGTATATAGCTTTTCCCATCATCT | 57.179 | 36.000 | 8.67 | 0.00 | 0.00 | 2.90 |
2556 | 2838 | 4.892934 | ACTTCAAAGCCAAACATCCACTTA | 59.107 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2618 | 2900 | 5.582269 | AGAAAGAAAAAGGAAGCAAAAGCAC | 59.418 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2651 | 2933 | 6.829229 | TGATTGCATTGACTGAGAAATTCT | 57.171 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2653 | 2935 | 8.092068 | TGAAATGATTGCATTGACTGAGAAATT | 58.908 | 29.630 | 0.00 | 0.00 | 43.71 | 1.82 |
2709 | 2991 | 9.636789 | AACTACTAAACAAAGGGAAGTACAATT | 57.363 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2750 | 3032 | 9.448438 | ACATCAATGTGTGTAGTGTTATAATGT | 57.552 | 29.630 | 0.00 | 0.00 | 40.03 | 2.71 |
2753 | 3035 | 8.233868 | GCAACATCAATGTGTGTAGTGTTATAA | 58.766 | 33.333 | 0.00 | 0.00 | 41.61 | 0.98 |
2754 | 3036 | 7.389053 | TGCAACATCAATGTGTGTAGTGTTATA | 59.611 | 33.333 | 0.00 | 0.00 | 41.61 | 0.98 |
2755 | 3037 | 6.206438 | TGCAACATCAATGTGTGTAGTGTTAT | 59.794 | 34.615 | 0.00 | 0.00 | 41.61 | 1.89 |
2756 | 3038 | 5.529060 | TGCAACATCAATGTGTGTAGTGTTA | 59.471 | 36.000 | 0.00 | 0.00 | 41.61 | 2.41 |
2757 | 3039 | 4.337836 | TGCAACATCAATGTGTGTAGTGTT | 59.662 | 37.500 | 0.00 | 0.00 | 41.61 | 3.32 |
2810 | 3094 | 1.843851 | GGGATGATACCAGGGACACAA | 59.156 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
2815 | 3099 | 1.513991 | AGGATGGGATGATACCAGGGA | 59.486 | 52.381 | 1.45 | 0.00 | 42.15 | 4.20 |
2850 | 3134 | 1.483827 | TGAGTAGATCTGCAAGGCCTG | 59.516 | 52.381 | 5.69 | 1.10 | 0.00 | 4.85 |
2870 | 3154 | 8.044060 | TGTCATTTAGCTCAAAGATTTCGAAT | 57.956 | 30.769 | 0.00 | 0.00 | 0.00 | 3.34 |
2914 | 3198 | 2.503375 | CGACCACGCCGTAGACAC | 60.503 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2984 | 3268 | 7.449395 | TCTTTAGTGAGTACTTGGCAGTTAGTA | 59.551 | 37.037 | 0.00 | 0.00 | 38.36 | 1.82 |
3077 | 3365 | 9.729023 | CCGACATATTAATTTTCTATGTTTGCA | 57.271 | 29.630 | 0.00 | 0.00 | 36.48 | 4.08 |
3105 | 3394 | 2.659428 | AGAACCAGCAAAGCCATATCC | 58.341 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
3154 | 3547 | 5.064452 | CAGAGAGCGAATTTGTTATCTGCTT | 59.936 | 40.000 | 17.80 | 0.00 | 0.00 | 3.91 |
3176 | 3569 | 4.400884 | ACCACTAGACTAGATGTTGCTCAG | 59.599 | 45.833 | 16.55 | 0.36 | 0.00 | 3.35 |
3247 | 3725 | 6.471233 | TCCAGAATACATCTTGACTTCGAT | 57.529 | 37.500 | 0.00 | 0.00 | 35.73 | 3.59 |
3297 | 3775 | 1.210478 | GCCTGTATTCTGCCTGGAAGA | 59.790 | 52.381 | 0.00 | 0.00 | 34.07 | 2.87 |
3399 | 3877 | 0.320771 | GGGAGCGTGTGTCAGAACAT | 60.321 | 55.000 | 0.00 | 0.00 | 37.81 | 2.71 |
3411 | 3889 | 0.824759 | GAACTACATCAGGGGAGCGT | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
3412 | 3890 | 0.824109 | TGAACTACATCAGGGGAGCG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3552 | 5235 | 8.871125 | GTTATTAGAAGGTAGAATGGGAGATCA | 58.129 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
3609 | 5316 | 2.867624 | TGAATGTTCCTCTTGCTGCTT | 58.132 | 42.857 | 0.00 | 0.00 | 0.00 | 3.91 |
3665 | 5381 | 0.249073 | GCAGTGACACACTCGACAGT | 60.249 | 55.000 | 8.59 | 0.00 | 43.43 | 3.55 |
3667 | 5383 | 0.389025 | ATGCAGTGACACACTCGACA | 59.611 | 50.000 | 8.59 | 4.25 | 43.43 | 4.35 |
3689 | 5585 | 0.679960 | GACCTACAATGCCCACCACC | 60.680 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3731 | 5627 | 6.810911 | ACACAAATAACAAATGTAACTGCCA | 58.189 | 32.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3772 | 5833 | 6.203530 | TCGAATCTGATTGCTTAACCATCATC | 59.796 | 38.462 | 7.78 | 0.00 | 0.00 | 2.92 |
3791 | 5852 | 4.065321 | ACCACTGGATCTGAATCGAATC | 57.935 | 45.455 | 0.71 | 0.00 | 32.24 | 2.52 |
3820 | 5882 | 2.093658 | ACACGGAGAGAGAGAGAGAGAC | 60.094 | 54.545 | 0.00 | 0.00 | 0.00 | 3.36 |
3863 | 5940 | 9.002600 | TCATTATCATTACTAATGCCATGTGAC | 57.997 | 33.333 | 4.13 | 0.00 | 38.77 | 3.67 |
3915 | 6614 | 1.228367 | AAGGGCCAGTCAAGTGCAG | 60.228 | 57.895 | 6.18 | 0.00 | 0.00 | 4.41 |
3949 | 6648 | 4.263068 | CCTCAAAGTCAACAGGGTACTCAT | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
3971 | 6670 | 8.575649 | TTCCATCTTTTATCCTTAGTTCAACC | 57.424 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
3998 | 6697 | 9.159364 | CTGATCAATGTTTTATCTTGAGACTCA | 57.841 | 33.333 | 0.00 | 0.00 | 32.82 | 3.41 |
4014 | 6713 | 6.013725 | TGGTGGTTAGTAGAACTGATCAATGT | 60.014 | 38.462 | 0.00 | 0.00 | 26.03 | 2.71 |
4146 | 6845 | 3.246416 | AGTAGACAGCCCTCCGATAAT | 57.754 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
4151 | 6850 | 1.726853 | CAAAAGTAGACAGCCCTCCG | 58.273 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4200 | 6899 | 2.048597 | TTGCCGACGTGCAGTAGG | 60.049 | 61.111 | 10.21 | 9.87 | 46.78 | 3.18 |
4209 | 6926 | 0.098025 | AACAACACAACTTGCCGACG | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
4249 | 6966 | 5.414765 | GGAACGTAACCTTCCAGATTTTCAT | 59.585 | 40.000 | 0.00 | 0.00 | 37.68 | 2.57 |
4254 | 6971 | 4.635699 | AAGGAACGTAACCTTCCAGATT | 57.364 | 40.909 | 17.54 | 0.00 | 43.22 | 2.40 |
4292 | 7012 | 4.339247 | AGTGAACCTTTCAATTCCACAGTG | 59.661 | 41.667 | 0.00 | 0.00 | 42.15 | 3.66 |
4303 | 7023 | 4.286808 | TGATGATCCTCAGTGAACCTTTCA | 59.713 | 41.667 | 0.00 | 0.00 | 37.33 | 2.69 |
4304 | 7024 | 4.836825 | TGATGATCCTCAGTGAACCTTTC | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
4381 | 7101 | 0.463654 | TATCTGACAATGCCGGGCAC | 60.464 | 55.000 | 26.48 | 12.38 | 43.04 | 5.01 |
4387 | 7107 | 1.336125 | GGCTGCTTATCTGACAATGCC | 59.664 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
4406 | 7126 | 5.711976 | AGAATCACCAATAACACTTTCCTGG | 59.288 | 40.000 | 0.00 | 0.00 | 0.00 | 4.45 |
4413 | 7133 | 5.355350 | GCAGCTTAGAATCACCAATAACACT | 59.645 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4463 | 7183 | 3.616821 | TGTTGTCAAGTTTGTCTCTCACG | 59.383 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
4469 | 7189 | 3.023119 | TGCCATGTTGTCAAGTTTGTCT | 58.977 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
4475 | 7195 | 1.546323 | CCCTCTGCCATGTTGTCAAGT | 60.546 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
4511 | 7231 | 0.032615 | ACTAGCCACAGAGAGAGGGG | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4565 | 7285 | 6.223138 | TCAAAGTTAGATTACACAAGCACG | 57.777 | 37.500 | 0.00 | 0.00 | 0.00 | 5.34 |
4566 | 7286 | 7.639945 | ACTTCAAAGTTAGATTACACAAGCAC | 58.360 | 34.615 | 0.00 | 0.00 | 35.21 | 4.40 |
4567 | 7287 | 7.801716 | ACTTCAAAGTTAGATTACACAAGCA | 57.198 | 32.000 | 0.00 | 0.00 | 35.21 | 3.91 |
4568 | 7288 | 9.204570 | TCTACTTCAAAGTTAGATTACACAAGC | 57.795 | 33.333 | 0.00 | 0.00 | 40.37 | 4.01 |
4586 | 7309 | 6.455647 | CAACACAACATAGGTCTCTACTTCA | 58.544 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4587 | 7310 | 5.869888 | CCAACACAACATAGGTCTCTACTTC | 59.130 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4589 | 7312 | 4.223032 | CCCAACACAACATAGGTCTCTACT | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
4590 | 7313 | 4.020485 | ACCCAACACAACATAGGTCTCTAC | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
4592 | 7315 | 2.979678 | ACCCAACACAACATAGGTCTCT | 59.020 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
4593 | 7316 | 3.074412 | CACCCAACACAACATAGGTCTC | 58.926 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4594 | 7317 | 2.708861 | TCACCCAACACAACATAGGTCT | 59.291 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
4611 | 7334 | 4.024048 | AGTTTGATGACACGTTCAATCACC | 60.024 | 41.667 | 10.02 | 3.29 | 37.92 | 4.02 |
4618 | 7341 | 6.089150 | GGTCTACTTAGTTTGATGACACGTTC | 59.911 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
4719 | 7442 | 0.250295 | CCCAGCCAGTTCGACTCAAA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4791 | 7514 | 4.431416 | TGGACAACCAGACAATACTTGT | 57.569 | 40.909 | 0.00 | 0.00 | 43.57 | 3.16 |
4799 | 7522 | 6.833027 | GTCGGAGAAATGGACAACCAGACA | 62.833 | 50.000 | 0.00 | 0.00 | 45.13 | 3.41 |
4800 | 7523 | 4.413777 | GTCGGAGAAATGGACAACCAGAC | 61.414 | 52.174 | 0.00 | 0.00 | 45.13 | 3.51 |
4801 | 7524 | 2.289444 | GTCGGAGAAATGGACAACCAGA | 60.289 | 50.000 | 0.00 | 0.00 | 45.13 | 3.86 |
4802 | 7525 | 2.076863 | GTCGGAGAAATGGACAACCAG | 58.923 | 52.381 | 0.00 | 0.00 | 45.13 | 4.00 |
4803 | 7526 | 1.418264 | TGTCGGAGAAATGGACAACCA | 59.582 | 47.619 | 0.00 | 0.00 | 45.78 | 3.67 |
4804 | 7527 | 2.178912 | TGTCGGAGAAATGGACAACC | 57.821 | 50.000 | 0.00 | 0.00 | 39.69 | 3.77 |
4805 | 7528 | 3.139077 | ACTTGTCGGAGAAATGGACAAC | 58.861 | 45.455 | 2.02 | 0.00 | 43.52 | 3.32 |
4806 | 7529 | 3.485463 | ACTTGTCGGAGAAATGGACAA | 57.515 | 42.857 | 5.80 | 5.80 | 45.46 | 3.18 |
4807 | 7530 | 4.819105 | ATACTTGTCGGAGAAATGGACA | 57.181 | 40.909 | 0.00 | 0.00 | 39.69 | 4.02 |
4808 | 7531 | 6.148811 | TGAAAATACTTGTCGGAGAAATGGAC | 59.851 | 38.462 | 0.00 | 0.00 | 39.69 | 4.02 |
4809 | 7532 | 6.234920 | TGAAAATACTTGTCGGAGAAATGGA | 58.765 | 36.000 | 0.00 | 0.00 | 39.69 | 3.41 |
4810 | 7533 | 6.494893 | TGAAAATACTTGTCGGAGAAATGG | 57.505 | 37.500 | 0.00 | 0.00 | 39.69 | 3.16 |
4811 | 7534 | 7.535258 | CACTTGAAAATACTTGTCGGAGAAATG | 59.465 | 37.037 | 0.00 | 0.00 | 39.69 | 2.32 |
4812 | 7535 | 7.308589 | CCACTTGAAAATACTTGTCGGAGAAAT | 60.309 | 37.037 | 0.00 | 0.00 | 39.69 | 2.17 |
4813 | 7536 | 6.017440 | CCACTTGAAAATACTTGTCGGAGAAA | 60.017 | 38.462 | 0.00 | 0.00 | 39.69 | 2.52 |
4814 | 7537 | 5.468746 | CCACTTGAAAATACTTGTCGGAGAA | 59.531 | 40.000 | 0.00 | 0.00 | 39.69 | 2.87 |
4815 | 7538 | 4.994852 | CCACTTGAAAATACTTGTCGGAGA | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
4816 | 7539 | 4.994852 | TCCACTTGAAAATACTTGTCGGAG | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
4817 | 7540 | 4.963373 | TCCACTTGAAAATACTTGTCGGA | 58.037 | 39.130 | 0.00 | 0.00 | 0.00 | 4.55 |
4818 | 7541 | 4.154195 | CCTCCACTTGAAAATACTTGTCGG | 59.846 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
4859 | 7582 | 5.763444 | ACTACATTCGTCAATTTGACTCG | 57.237 | 39.130 | 23.29 | 13.76 | 44.85 | 4.18 |
4862 | 7585 | 7.908193 | AACAAACTACATTCGTCAATTTGAC | 57.092 | 32.000 | 17.76 | 17.76 | 43.65 | 3.18 |
4997 | 7722 | 5.808366 | TTTCTACTATGATGCTACCCCAG | 57.192 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
5023 | 7748 | 8.602424 | CCCAGTGTGATTAATCAAGGGTATATA | 58.398 | 37.037 | 24.64 | 1.17 | 38.75 | 0.86 |
5024 | 7749 | 7.461749 | CCCAGTGTGATTAATCAAGGGTATAT | 58.538 | 38.462 | 24.64 | 6.77 | 38.75 | 0.86 |
5025 | 7750 | 6.183361 | CCCCAGTGTGATTAATCAAGGGTATA | 60.183 | 42.308 | 27.58 | 5.25 | 38.75 | 1.47 |
5052 | 7777 | 2.362120 | ATGCTGCACTCAAGGGCC | 60.362 | 61.111 | 3.57 | 0.00 | 0.00 | 5.80 |
5101 | 7826 | 4.258702 | TCTTCCACTCTGTTTCTAGCAC | 57.741 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
5200 | 7925 | 5.132648 | TGCTGGGATAGTATTTCCACATCTT | 59.867 | 40.000 | 3.00 | 0.00 | 34.77 | 2.40 |
5211 | 7936 | 9.605951 | ATTTAATTTCCATTGCTGGGATAGTAT | 57.394 | 29.630 | 0.00 | 0.00 | 43.34 | 2.12 |
5212 | 7937 | 9.077885 | GATTTAATTTCCATTGCTGGGATAGTA | 57.922 | 33.333 | 0.00 | 0.00 | 43.34 | 1.82 |
5213 | 7938 | 7.786464 | AGATTTAATTTCCATTGCTGGGATAGT | 59.214 | 33.333 | 0.00 | 0.00 | 43.34 | 2.12 |
5214 | 7939 | 8.186709 | AGATTTAATTTCCATTGCTGGGATAG | 57.813 | 34.615 | 0.00 | 0.00 | 43.34 | 2.08 |
5215 | 7940 | 7.233348 | GGAGATTTAATTTCCATTGCTGGGATA | 59.767 | 37.037 | 9.33 | 0.00 | 43.34 | 2.59 |
5216 | 7941 | 6.042437 | GGAGATTTAATTTCCATTGCTGGGAT | 59.958 | 38.462 | 9.33 | 0.00 | 43.34 | 3.85 |
5217 | 7942 | 5.363580 | GGAGATTTAATTTCCATTGCTGGGA | 59.636 | 40.000 | 9.33 | 0.00 | 43.34 | 4.37 |
5218 | 7943 | 5.129155 | TGGAGATTTAATTTCCATTGCTGGG | 59.871 | 40.000 | 12.44 | 0.00 | 43.34 | 4.45 |
5219 | 7944 | 6.224665 | TGGAGATTTAATTTCCATTGCTGG | 57.775 | 37.500 | 12.44 | 0.00 | 44.64 | 4.85 |
5309 | 8311 | 4.539083 | TGTTGCCGTCCGTGCTGT | 62.539 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
5346 | 8348 | 5.138276 | AGGGTTTTAGGTTCTCTGGTTTTC | 58.862 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
5355 | 8357 | 5.026093 | AGTCCTCTAGGGTTTTAGGTTCT | 57.974 | 43.478 | 0.00 | 0.00 | 36.25 | 3.01 |
5356 | 8358 | 6.864151 | TTAGTCCTCTAGGGTTTTAGGTTC | 57.136 | 41.667 | 0.00 | 0.00 | 36.25 | 3.62 |
5370 | 8372 | 7.125792 | TCTCTTTTTGTCACTTTAGTCCTCT | 57.874 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
5371 | 8373 | 7.787725 | TTCTCTTTTTGTCACTTTAGTCCTC | 57.212 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
5385 | 8387 | 7.575332 | TTTCGTTTCTGGTTTTCTCTTTTTG | 57.425 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5425 | 8427 | 4.887071 | CAGTCATTAATCCCCCGAAAATCA | 59.113 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
5428 | 8430 | 4.577988 | TCAGTCATTAATCCCCCGAAAA | 57.422 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
5461 | 8463 | 7.243487 | CCTTTTGTTTTTCCTTCTCTTTTTGC | 58.757 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
5480 | 8482 | 1.585297 | CCTTGTTTGGCTGCCTTTTG | 58.415 | 50.000 | 21.03 | 5.25 | 0.00 | 2.44 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.