Multiple sequence alignment - TraesCS2D01G577200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G577200 chr2D 100.000 2564 0 0 1 2564 640514646 640517209 0.000000e+00 4735.0
1 TraesCS2D01G577200 chr2D 90.170 763 40 14 923 1677 640983026 640982291 0.000000e+00 961.0
2 TraesCS2D01G577200 chr2D 93.728 287 17 1 639 925 640983588 640983303 1.820000e-116 429.0
3 TraesCS2D01G577200 chr2D 90.090 333 28 3 1 333 376129414 376129741 6.560000e-116 427.0
4 TraesCS2D01G577200 chr2D 88.509 322 32 4 1731 2049 640981407 640981088 4.000000e-103 385.0
5 TraesCS2D01G577200 chr2D 91.703 229 13 1 337 565 640983802 640983580 1.920000e-81 313.0
6 TraesCS2D01G577200 chr2B 91.086 1335 81 13 351 1677 800894389 800893085 0.000000e+00 1772.0
7 TraesCS2D01G577200 chr2B 93.005 1015 54 10 607 1609 800730691 800729682 0.000000e+00 1465.0
8 TraesCS2D01G577200 chr2B 94.049 689 29 7 1521 2208 800960878 800960201 0.000000e+00 1035.0
9 TraesCS2D01G577200 chr2B 90.419 334 26 4 1 333 267934353 267934681 3.920000e-118 435.0
10 TraesCS2D01G577200 chr2B 91.611 298 20 5 1203 1498 800968601 800968307 8.540000e-110 407.0
11 TraesCS2D01G577200 chr2B 91.126 293 23 2 1683 1972 800726742 800726450 6.650000e-106 394.0
12 TraesCS2D01G577200 chr2B 90.102 293 18 1 1896 2188 800892413 800892132 1.120000e-98 370.0
13 TraesCS2D01G577200 chr2B 82.420 438 56 15 1966 2400 800726037 800725618 1.880000e-96 363.0
14 TraesCS2D01G577200 chr2B 88.757 169 16 3 2398 2564 708704770 708704937 1.200000e-48 204.0
15 TraesCS2D01G577200 chr2B 97.778 45 1 0 1633 1677 800726825 800726781 7.610000e-11 78.7
16 TraesCS2D01G577200 chr2A 87.432 740 60 18 954 1676 765865047 765865770 0.000000e+00 821.0
17 TraesCS2D01G577200 chr2A 89.320 412 32 6 334 742 765864474 765864876 8.190000e-140 507.0
18 TraesCS2D01G577200 chr2A 83.012 571 59 17 1678 2245 765865946 765866481 1.380000e-132 483.0
19 TraesCS2D01G577200 chr2A 100.000 28 0 0 1700 1727 384990549 384990576 5.000000e-03 52.8
20 TraesCS2D01G577200 chr3A 90.691 333 25 5 1 333 604349955 604349629 3.030000e-119 438.0
21 TraesCS2D01G577200 chr5D 90.332 331 27 3 3 333 339141170 339141495 1.820000e-116 429.0
22 TraesCS2D01G577200 chr5D 91.667 168 10 4 2400 2564 29148141 29147975 1.980000e-56 230.0
23 TraesCS2D01G577200 chr5D 76.650 197 34 9 1812 2004 500940959 500940771 5.840000e-17 99.0
24 TraesCS2D01G577200 chr3D 90.120 334 28 5 1 333 460490650 460490979 1.820000e-116 429.0
25 TraesCS2D01G577200 chr3D 91.765 170 11 3 2397 2564 114495273 114495441 1.530000e-57 233.0
26 TraesCS2D01G577200 chr3B 89.535 344 29 5 1 342 696591511 696591173 1.820000e-116 429.0
27 TraesCS2D01G577200 chr5B 90.090 333 28 3 1 333 472214037 472214364 6.560000e-116 427.0
28 TraesCS2D01G577200 chr5B 76.098 205 35 12 1812 2008 622462723 622462525 7.550000e-16 95.3
29 TraesCS2D01G577200 chr1D 90.090 333 28 3 1 333 445362014 445362341 6.560000e-116 427.0
30 TraesCS2D01G577200 chr4B 89.820 334 29 3 1 334 638416078 638416406 8.480000e-115 424.0
31 TraesCS2D01G577200 chr4B 91.617 167 12 2 2399 2564 460747257 460747422 1.980000e-56 230.0
32 TraesCS2D01G577200 chr4B 89.820 167 14 3 2400 2564 585011219 585011054 7.190000e-51 211.0
33 TraesCS2D01G577200 chr7D 91.124 169 12 3 2398 2564 264044317 264044150 2.570000e-55 226.0
34 TraesCS2D01G577200 chr6B 89.881 168 14 3 2399 2564 574468279 574468445 2.000000e-51 213.0
35 TraesCS2D01G577200 chr4D 88.701 177 16 4 2391 2564 380533665 380533840 2.000000e-51 213.0
36 TraesCS2D01G577200 chr6D 89.474 171 13 4 2398 2564 58168693 58168524 7.190000e-51 211.0
37 TraesCS2D01G577200 chr6A 100.000 28 0 0 1700 1727 93890610 93890583 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G577200 chr2D 640514646 640517209 2563 False 4735.000000 4735 100.00000 1 2564 1 chr2D.!!$F2 2563
1 TraesCS2D01G577200 chr2D 640981088 640983802 2714 True 522.000000 961 91.02750 337 2049 4 chr2D.!!$R1 1712
2 TraesCS2D01G577200 chr2B 800892132 800894389 2257 True 1071.000000 1772 90.59400 351 2188 2 chr2B.!!$R4 1837
3 TraesCS2D01G577200 chr2B 800960201 800960878 677 True 1035.000000 1035 94.04900 1521 2208 1 chr2B.!!$R1 687
4 TraesCS2D01G577200 chr2B 800725618 800730691 5073 True 575.175000 1465 91.08225 607 2400 4 chr2B.!!$R3 1793
5 TraesCS2D01G577200 chr2A 765864474 765866481 2007 False 603.666667 821 86.58800 334 2245 3 chr2A.!!$F2 1911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.026803 GCGCGAATCACTTCACCATC 59.973 55.0 12.10 0.0 0.0 3.51 F
104 105 0.039180 TAAGAGCTCGAGGGGTGTCA 59.961 55.0 15.58 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1824 2.188062 GTCCCAAACATGGACGGTAA 57.812 50.000 0.0 0.0 42.63 2.85 R
2090 6653 4.039730 TCCAATGTACCAAAAACATGGGTG 59.960 41.667 9.0 0.0 45.30 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.087892 AGCCCTGCGCGAATCACT 62.088 61.111 12.10 0.00 44.76 3.41
18 19 3.127533 GCCCTGCGCGAATCACTT 61.128 61.111 12.10 0.00 0.00 3.16
19 20 3.093278 CCCTGCGCGAATCACTTC 58.907 61.111 12.10 0.00 0.00 3.01
20 21 1.741401 CCCTGCGCGAATCACTTCA 60.741 57.895 12.10 0.00 0.00 3.02
21 22 1.421485 CCTGCGCGAATCACTTCAC 59.579 57.895 12.10 0.00 0.00 3.18
22 23 1.421485 CTGCGCGAATCACTTCACC 59.579 57.895 12.10 0.00 0.00 4.02
23 24 1.291184 CTGCGCGAATCACTTCACCA 61.291 55.000 12.10 0.00 0.00 4.17
24 25 0.673333 TGCGCGAATCACTTCACCAT 60.673 50.000 12.10 0.00 0.00 3.55
25 26 0.026803 GCGCGAATCACTTCACCATC 59.973 55.000 12.10 0.00 0.00 3.51
26 27 1.358877 CGCGAATCACTTCACCATCA 58.641 50.000 0.00 0.00 0.00 3.07
27 28 1.935873 CGCGAATCACTTCACCATCAT 59.064 47.619 0.00 0.00 0.00 2.45
28 29 2.033407 CGCGAATCACTTCACCATCATC 60.033 50.000 0.00 0.00 0.00 2.92
29 30 2.033407 GCGAATCACTTCACCATCATCG 60.033 50.000 0.00 0.00 0.00 3.84
30 31 3.190079 CGAATCACTTCACCATCATCGT 58.810 45.455 0.00 0.00 0.00 3.73
31 32 3.243877 CGAATCACTTCACCATCATCGTC 59.756 47.826 0.00 0.00 0.00 4.20
32 33 3.893326 ATCACTTCACCATCATCGTCA 57.107 42.857 0.00 0.00 0.00 4.35
33 34 2.959516 TCACTTCACCATCATCGTCAC 58.040 47.619 0.00 0.00 0.00 3.67
34 35 2.002586 CACTTCACCATCATCGTCACC 58.997 52.381 0.00 0.00 0.00 4.02
35 36 1.623311 ACTTCACCATCATCGTCACCA 59.377 47.619 0.00 0.00 0.00 4.17
36 37 2.002586 CTTCACCATCATCGTCACCAC 58.997 52.381 0.00 0.00 0.00 4.16
38 39 1.447838 ACCATCATCGTCACCACGC 60.448 57.895 0.00 0.00 46.28 5.34
39 40 2.173669 CCATCATCGTCACCACGCC 61.174 63.158 0.00 0.00 46.28 5.68
40 41 2.202743 ATCATCGTCACCACGCCG 60.203 61.111 0.00 0.00 46.28 6.46
41 42 3.001902 ATCATCGTCACCACGCCGT 62.002 57.895 0.00 0.00 46.28 5.68
42 43 2.884087 ATCATCGTCACCACGCCGTC 62.884 60.000 0.00 0.00 46.28 4.79
43 44 4.771356 ATCGTCACCACGCCGTCG 62.771 66.667 0.00 0.00 46.28 5.12
57 58 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
58 59 1.007734 GTCGTGCTGACGGAACTCA 60.008 57.895 0.00 0.00 46.11 3.41
59 60 0.388649 GTCGTGCTGACGGAACTCAT 60.389 55.000 0.00 0.00 46.11 2.90
60 61 0.109272 TCGTGCTGACGGAACTCATC 60.109 55.000 0.00 0.00 46.11 2.92
61 62 0.109086 CGTGCTGACGGAACTCATCT 60.109 55.000 0.00 0.00 42.18 2.90
62 63 1.132453 CGTGCTGACGGAACTCATCTA 59.868 52.381 0.00 0.00 42.18 1.98
63 64 2.531206 GTGCTGACGGAACTCATCTAC 58.469 52.381 0.00 0.00 0.00 2.59
64 65 2.164624 GTGCTGACGGAACTCATCTACT 59.835 50.000 0.00 0.00 0.00 2.57
65 66 2.826128 TGCTGACGGAACTCATCTACTT 59.174 45.455 0.00 0.00 0.00 2.24
66 67 3.119459 TGCTGACGGAACTCATCTACTTC 60.119 47.826 0.00 0.00 0.00 3.01
67 68 3.735514 GCTGACGGAACTCATCTACTTCC 60.736 52.174 0.00 0.00 0.00 3.46
68 69 3.697045 CTGACGGAACTCATCTACTTCCT 59.303 47.826 0.00 0.00 32.63 3.36
69 70 4.087182 TGACGGAACTCATCTACTTCCTT 58.913 43.478 0.00 0.00 32.63 3.36
70 71 4.082190 TGACGGAACTCATCTACTTCCTTG 60.082 45.833 0.00 0.00 32.63 3.61
71 72 4.087182 ACGGAACTCATCTACTTCCTTGA 58.913 43.478 0.00 0.00 32.63 3.02
72 73 4.082136 ACGGAACTCATCTACTTCCTTGAC 60.082 45.833 0.00 0.00 32.63 3.18
73 74 4.082190 CGGAACTCATCTACTTCCTTGACA 60.082 45.833 0.00 0.00 32.63 3.58
74 75 5.172205 GGAACTCATCTACTTCCTTGACAC 58.828 45.833 0.00 0.00 32.16 3.67
75 76 5.046950 GGAACTCATCTACTTCCTTGACACT 60.047 44.000 0.00 0.00 32.16 3.55
76 77 5.652994 ACTCATCTACTTCCTTGACACTC 57.347 43.478 0.00 0.00 0.00 3.51
77 78 5.329399 ACTCATCTACTTCCTTGACACTCT 58.671 41.667 0.00 0.00 0.00 3.24
78 79 5.184864 ACTCATCTACTTCCTTGACACTCTG 59.815 44.000 0.00 0.00 0.00 3.35
79 80 3.944055 TCTACTTCCTTGACACTCTGC 57.056 47.619 0.00 0.00 0.00 4.26
80 81 3.501349 TCTACTTCCTTGACACTCTGCT 58.499 45.455 0.00 0.00 0.00 4.24
81 82 2.540265 ACTTCCTTGACACTCTGCTG 57.460 50.000 0.00 0.00 0.00 4.41
82 83 1.071385 ACTTCCTTGACACTCTGCTGG 59.929 52.381 0.00 0.00 0.00 4.85
83 84 1.345741 CTTCCTTGACACTCTGCTGGA 59.654 52.381 0.00 0.00 0.00 3.86
84 85 1.649321 TCCTTGACACTCTGCTGGAT 58.351 50.000 0.00 0.00 0.00 3.41
85 86 1.980765 TCCTTGACACTCTGCTGGATT 59.019 47.619 0.00 0.00 0.00 3.01
86 87 3.173151 TCCTTGACACTCTGCTGGATTA 58.827 45.455 0.00 0.00 0.00 1.75
87 88 3.582647 TCCTTGACACTCTGCTGGATTAA 59.417 43.478 0.00 0.00 0.00 1.40
88 89 3.937706 CCTTGACACTCTGCTGGATTAAG 59.062 47.826 0.00 0.00 0.00 1.85
89 90 4.323028 CCTTGACACTCTGCTGGATTAAGA 60.323 45.833 0.00 0.00 0.00 2.10
90 91 4.462508 TGACACTCTGCTGGATTAAGAG 57.537 45.455 0.00 0.00 42.59 2.85
91 92 3.194062 GACACTCTGCTGGATTAAGAGC 58.806 50.000 0.00 0.00 40.96 4.09
92 93 2.836981 ACACTCTGCTGGATTAAGAGCT 59.163 45.455 0.00 0.00 40.96 4.09
93 94 3.118811 ACACTCTGCTGGATTAAGAGCTC 60.119 47.826 5.27 5.27 40.96 4.09
94 95 2.100584 ACTCTGCTGGATTAAGAGCTCG 59.899 50.000 8.37 0.00 40.96 5.03
95 96 2.360483 CTCTGCTGGATTAAGAGCTCGA 59.640 50.000 8.37 0.00 36.11 4.04
96 97 2.360483 TCTGCTGGATTAAGAGCTCGAG 59.640 50.000 8.45 8.45 36.11 4.04
97 98 1.410517 TGCTGGATTAAGAGCTCGAGG 59.589 52.381 15.58 0.00 36.11 4.63
98 99 1.270041 GCTGGATTAAGAGCTCGAGGG 60.270 57.143 15.58 0.00 32.12 4.30
99 100 1.342819 CTGGATTAAGAGCTCGAGGGG 59.657 57.143 15.58 0.00 0.00 4.79
100 101 1.343075 TGGATTAAGAGCTCGAGGGGT 60.343 52.381 15.58 0.00 0.00 4.95
101 102 1.069358 GGATTAAGAGCTCGAGGGGTG 59.931 57.143 15.58 0.00 0.00 4.61
102 103 1.757699 GATTAAGAGCTCGAGGGGTGT 59.242 52.381 15.58 0.00 0.00 4.16
103 104 1.183549 TTAAGAGCTCGAGGGGTGTC 58.816 55.000 15.58 0.00 0.00 3.67
104 105 0.039180 TAAGAGCTCGAGGGGTGTCA 59.961 55.000 15.58 0.00 0.00 3.58
105 106 0.616111 AAGAGCTCGAGGGGTGTCAT 60.616 55.000 15.58 0.00 0.00 3.06
106 107 1.040339 AGAGCTCGAGGGGTGTCATC 61.040 60.000 15.58 0.00 0.00 2.92
111 112 4.148825 GAGGGGTGTCATCGCGCT 62.149 66.667 5.56 0.00 37.23 5.92
112 113 4.457496 AGGGGTGTCATCGCGCTG 62.457 66.667 5.56 2.97 37.23 5.18
113 114 4.451150 GGGGTGTCATCGCGCTGA 62.451 66.667 8.85 8.85 37.23 4.26
114 115 2.434185 GGGTGTCATCGCGCTGAA 60.434 61.111 15.04 2.62 34.80 3.02
115 116 2.740714 GGGTGTCATCGCGCTGAAC 61.741 63.158 15.04 13.94 34.80 3.18
117 118 2.049526 TGTCATCGCGCTGAACGT 60.050 55.556 15.04 0.00 46.11 3.99
124 125 3.337889 GCGCTGAACGTGTGCAGA 61.338 61.111 12.25 0.00 46.11 4.26
125 126 2.881266 GCGCTGAACGTGTGCAGAA 61.881 57.895 12.25 0.00 46.11 3.02
126 127 1.083401 CGCTGAACGTGTGCAGAAC 60.083 57.895 12.25 0.00 36.87 3.01
127 128 1.490693 CGCTGAACGTGTGCAGAACT 61.491 55.000 12.25 0.00 36.87 3.01
128 129 0.233332 GCTGAACGTGTGCAGAACTC 59.767 55.000 12.25 0.00 34.06 3.01
132 133 4.578913 CGTGTGCAGAACTCGGAT 57.421 55.556 0.00 0.00 41.05 4.18
133 134 2.073307 CGTGTGCAGAACTCGGATG 58.927 57.895 0.00 0.00 41.05 3.51
134 135 0.667487 CGTGTGCAGAACTCGGATGT 60.667 55.000 0.00 0.00 41.05 3.06
135 136 0.792640 GTGTGCAGAACTCGGATGTG 59.207 55.000 0.00 0.00 0.00 3.21
136 137 0.950555 TGTGCAGAACTCGGATGTGC 60.951 55.000 0.00 0.00 34.62 4.57
137 138 0.950555 GTGCAGAACTCGGATGTGCA 60.951 55.000 0.00 0.00 41.72 4.57
138 139 0.671472 TGCAGAACTCGGATGTGCAG 60.671 55.000 0.00 0.00 39.17 4.41
139 140 0.671781 GCAGAACTCGGATGTGCAGT 60.672 55.000 0.00 0.00 34.18 4.40
140 141 1.404181 GCAGAACTCGGATGTGCAGTA 60.404 52.381 0.00 0.00 34.18 2.74
141 142 2.263077 CAGAACTCGGATGTGCAGTAC 58.737 52.381 0.00 0.00 0.00 2.73
142 143 1.135373 AGAACTCGGATGTGCAGTACG 60.135 52.381 0.00 0.00 0.00 3.67
143 144 0.601558 AACTCGGATGTGCAGTACGT 59.398 50.000 3.80 0.00 0.00 3.57
144 145 0.601558 ACTCGGATGTGCAGTACGTT 59.398 50.000 0.00 0.00 0.00 3.99
145 146 1.269166 CTCGGATGTGCAGTACGTTC 58.731 55.000 0.00 0.00 0.00 3.95
146 147 0.455464 TCGGATGTGCAGTACGTTCG 60.455 55.000 5.21 5.21 46.53 3.95
147 148 1.410737 CGGATGTGCAGTACGTTCGG 61.411 60.000 3.66 0.00 42.42 4.30
148 149 0.389426 GGATGTGCAGTACGTTCGGT 60.389 55.000 0.00 0.00 0.00 4.69
149 150 1.135315 GGATGTGCAGTACGTTCGGTA 60.135 52.381 0.00 0.00 0.00 4.02
158 159 2.444351 GTACGTTCGGTACTTGATCGG 58.556 52.381 17.26 0.00 46.50 4.18
159 160 0.883833 ACGTTCGGTACTTGATCGGT 59.116 50.000 17.26 0.00 33.92 4.69
160 161 1.270550 ACGTTCGGTACTTGATCGGTT 59.729 47.619 17.26 2.38 33.92 4.44
161 162 1.652124 CGTTCGGTACTTGATCGGTTG 59.348 52.381 9.70 0.00 30.29 3.77
162 163 1.997606 GTTCGGTACTTGATCGGTTGG 59.002 52.381 0.00 0.00 30.29 3.77
163 164 1.548081 TCGGTACTTGATCGGTTGGA 58.452 50.000 0.00 0.00 30.29 3.53
164 165 1.894466 TCGGTACTTGATCGGTTGGAA 59.106 47.619 0.00 0.00 30.29 3.53
165 166 1.997606 CGGTACTTGATCGGTTGGAAC 59.002 52.381 0.00 0.00 0.00 3.62
166 167 1.997606 GGTACTTGATCGGTTGGAACG 59.002 52.381 0.00 0.00 0.00 3.95
167 168 2.353011 GGTACTTGATCGGTTGGAACGA 60.353 50.000 0.00 0.00 45.19 3.85
168 169 2.080286 ACTTGATCGGTTGGAACGAG 57.920 50.000 0.00 0.00 44.24 4.18
169 170 1.616865 ACTTGATCGGTTGGAACGAGA 59.383 47.619 0.00 0.00 44.24 4.04
170 171 2.036733 ACTTGATCGGTTGGAACGAGAA 59.963 45.455 0.00 0.00 44.24 2.87
171 172 2.363788 TGATCGGTTGGAACGAGAAG 57.636 50.000 0.00 0.00 44.24 2.85
172 173 1.890489 TGATCGGTTGGAACGAGAAGA 59.110 47.619 0.00 0.00 44.24 2.87
173 174 2.297880 TGATCGGTTGGAACGAGAAGAA 59.702 45.455 0.00 0.00 44.24 2.52
174 175 2.433868 TCGGTTGGAACGAGAAGAAG 57.566 50.000 0.00 0.00 35.12 2.85
175 176 1.684983 TCGGTTGGAACGAGAAGAAGT 59.315 47.619 0.00 0.00 35.12 3.01
176 177 2.101917 TCGGTTGGAACGAGAAGAAGTT 59.898 45.455 0.00 0.00 35.12 2.66
177 178 3.318839 TCGGTTGGAACGAGAAGAAGTTA 59.681 43.478 0.00 0.00 35.12 2.24
178 179 3.673809 CGGTTGGAACGAGAAGAAGTTAG 59.326 47.826 0.00 0.00 0.00 2.34
179 180 4.558095 CGGTTGGAACGAGAAGAAGTTAGA 60.558 45.833 0.00 0.00 0.00 2.10
180 181 4.685165 GGTTGGAACGAGAAGAAGTTAGAC 59.315 45.833 0.00 0.00 0.00 2.59
181 182 5.509332 GGTTGGAACGAGAAGAAGTTAGACT 60.509 44.000 0.00 0.00 0.00 3.24
182 183 6.294397 GGTTGGAACGAGAAGAAGTTAGACTA 60.294 42.308 0.00 0.00 0.00 2.59
183 184 6.251655 TGGAACGAGAAGAAGTTAGACTAC 57.748 41.667 0.00 0.00 0.00 2.73
184 185 5.766670 TGGAACGAGAAGAAGTTAGACTACA 59.233 40.000 0.00 0.00 0.00 2.74
185 186 6.433404 TGGAACGAGAAGAAGTTAGACTACAT 59.567 38.462 0.00 0.00 0.00 2.29
186 187 7.609146 TGGAACGAGAAGAAGTTAGACTACATA 59.391 37.037 0.00 0.00 0.00 2.29
187 188 8.457261 GGAACGAGAAGAAGTTAGACTACATAA 58.543 37.037 0.00 0.00 0.00 1.90
188 189 9.837525 GAACGAGAAGAAGTTAGACTACATAAA 57.162 33.333 0.00 0.00 0.00 1.40
189 190 9.623350 AACGAGAAGAAGTTAGACTACATAAAC 57.377 33.333 0.00 0.00 0.00 2.01
190 191 8.242739 ACGAGAAGAAGTTAGACTACATAAACC 58.757 37.037 0.00 0.00 0.00 3.27
191 192 7.428761 CGAGAAGAAGTTAGACTACATAAACCG 59.571 40.741 0.00 0.00 0.00 4.44
192 193 7.034397 AGAAGAAGTTAGACTACATAAACCGC 58.966 38.462 0.00 0.00 0.00 5.68
193 194 5.338365 AGAAGTTAGACTACATAAACCGCG 58.662 41.667 0.00 0.00 0.00 6.46
194 195 4.708726 AGTTAGACTACATAAACCGCGT 57.291 40.909 4.92 0.00 0.00 6.01
195 196 5.064441 AGTTAGACTACATAAACCGCGTT 57.936 39.130 4.92 0.00 0.00 4.84
196 197 6.194796 AGTTAGACTACATAAACCGCGTTA 57.805 37.500 4.92 0.00 0.00 3.18
197 198 6.261118 AGTTAGACTACATAAACCGCGTTAG 58.739 40.000 4.92 0.00 0.00 2.34
198 199 3.442100 AGACTACATAAACCGCGTTAGC 58.558 45.455 4.92 0.00 40.74 3.09
199 200 3.119388 AGACTACATAAACCGCGTTAGCA 60.119 43.478 4.92 0.00 45.49 3.49
200 201 3.587923 ACTACATAAACCGCGTTAGCAA 58.412 40.909 4.92 0.00 45.49 3.91
201 202 3.995705 ACTACATAAACCGCGTTAGCAAA 59.004 39.130 4.92 0.00 45.49 3.68
202 203 3.191735 ACATAAACCGCGTTAGCAAAC 57.808 42.857 4.92 0.00 45.49 2.93
210 211 4.434876 GTTAGCAAACGCTTCCGC 57.565 55.556 0.00 0.00 41.09 5.54
211 212 1.866925 GTTAGCAAACGCTTCCGCT 59.133 52.632 0.00 0.00 41.09 5.52
212 213 0.237498 GTTAGCAAACGCTTCCGCTT 59.763 50.000 0.00 0.00 41.09 4.68
213 214 0.948678 TTAGCAAACGCTTCCGCTTT 59.051 45.000 0.00 0.00 41.09 3.51
214 215 0.515564 TAGCAAACGCTTCCGCTTTC 59.484 50.000 0.00 0.00 41.09 2.62
215 216 2.074920 GCAAACGCTTCCGCTTTCG 61.075 57.895 0.00 0.00 38.22 3.46
233 234 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
235 236 3.465990 TCTACGAGGGTACGTGGAG 57.534 57.895 0.00 0.00 45.53 3.86
236 237 0.904649 TCTACGAGGGTACGTGGAGA 59.095 55.000 0.00 0.00 45.53 3.71
237 238 1.012841 CTACGAGGGTACGTGGAGAC 58.987 60.000 0.00 0.00 44.98 3.36
238 239 0.324614 TACGAGGGTACGTGGAGACA 59.675 55.000 0.00 0.00 46.02 3.41
249 250 3.383162 TGGAGACACTCTTCCCCTC 57.617 57.895 0.00 0.00 33.40 4.30
250 251 0.787084 TGGAGACACTCTTCCCCTCT 59.213 55.000 0.00 0.00 33.40 3.69
251 252 1.272760 TGGAGACACTCTTCCCCTCTC 60.273 57.143 0.00 0.00 33.40 3.20
252 253 1.099689 GAGACACTCTTCCCCTCTCG 58.900 60.000 0.00 0.00 0.00 4.04
253 254 0.406361 AGACACTCTTCCCCTCTCGT 59.594 55.000 0.00 0.00 0.00 4.18
254 255 1.203075 AGACACTCTTCCCCTCTCGTT 60.203 52.381 0.00 0.00 0.00 3.85
255 256 0.969894 ACACTCTTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
256 257 0.390472 CACTCTTCCCCTCTCGTTGC 60.390 60.000 0.00 0.00 0.00 4.17
257 258 0.543174 ACTCTTCCCCTCTCGTTGCT 60.543 55.000 0.00 0.00 0.00 3.91
258 259 1.272536 ACTCTTCCCCTCTCGTTGCTA 60.273 52.381 0.00 0.00 0.00 3.49
259 260 2.035632 CTCTTCCCCTCTCGTTGCTAT 58.964 52.381 0.00 0.00 0.00 2.97
260 261 1.757118 TCTTCCCCTCTCGTTGCTATG 59.243 52.381 0.00 0.00 0.00 2.23
261 262 0.178068 TTCCCCTCTCGTTGCTATGC 59.822 55.000 0.00 0.00 0.00 3.14
262 263 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
263 264 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
264 265 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
265 266 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
266 267 2.484417 CCCTCTCGTTGCTATGCATCTT 60.484 50.000 0.19 0.00 38.76 2.40
267 268 2.799412 CCTCTCGTTGCTATGCATCTTC 59.201 50.000 0.19 0.00 38.76 2.87
268 269 3.492309 CCTCTCGTTGCTATGCATCTTCT 60.492 47.826 0.19 0.00 38.76 2.85
269 270 4.261783 CCTCTCGTTGCTATGCATCTTCTA 60.262 45.833 0.19 0.00 38.76 2.10
270 271 4.864633 TCTCGTTGCTATGCATCTTCTAG 58.135 43.478 0.19 0.00 38.76 2.43
271 272 3.384668 TCGTTGCTATGCATCTTCTAGC 58.615 45.455 0.19 7.00 38.76 3.42
272 273 3.068732 TCGTTGCTATGCATCTTCTAGCT 59.931 43.478 17.05 0.00 38.76 3.32
273 274 4.278419 TCGTTGCTATGCATCTTCTAGCTA 59.722 41.667 17.05 8.76 38.76 3.32
274 275 4.620609 CGTTGCTATGCATCTTCTAGCTAG 59.379 45.833 15.01 15.01 38.76 3.42
275 276 5.563671 CGTTGCTATGCATCTTCTAGCTAGA 60.564 44.000 19.72 19.72 38.76 2.43
276 277 6.397272 GTTGCTATGCATCTTCTAGCTAGAT 58.603 40.000 23.81 8.00 38.76 1.98
277 278 7.542890 GTTGCTATGCATCTTCTAGCTAGATA 58.457 38.462 23.81 15.34 38.76 1.98
278 279 7.332213 TGCTATGCATCTTCTAGCTAGATAG 57.668 40.000 23.81 20.90 38.89 2.08
279 280 7.115414 TGCTATGCATCTTCTAGCTAGATAGA 58.885 38.462 23.81 24.53 38.89 1.98
280 281 7.779326 TGCTATGCATCTTCTAGCTAGATAGAT 59.221 37.037 26.28 26.28 38.89 1.98
281 282 8.292448 GCTATGCATCTTCTAGCTAGATAGATC 58.708 40.741 27.71 23.64 35.95 2.75
282 283 9.565090 CTATGCATCTTCTAGCTAGATAGATCT 57.435 37.037 27.71 21.43 40.86 2.75
283 284 8.827832 ATGCATCTTCTAGCTAGATAGATCTT 57.172 34.615 27.71 20.92 38.32 2.40
284 285 8.648698 TGCATCTTCTAGCTAGATAGATCTTT 57.351 34.615 27.71 16.18 38.32 2.52
285 286 8.739039 TGCATCTTCTAGCTAGATAGATCTTTC 58.261 37.037 27.71 21.03 38.32 2.62
286 287 7.910162 GCATCTTCTAGCTAGATAGATCTTTCG 59.090 40.741 27.71 21.55 38.32 3.46
287 288 8.946085 CATCTTCTAGCTAGATAGATCTTTCGT 58.054 37.037 27.71 15.05 38.32 3.85
288 289 8.317891 TCTTCTAGCTAGATAGATCTTTCGTG 57.682 38.462 23.81 2.55 38.32 4.35
289 290 8.151596 TCTTCTAGCTAGATAGATCTTTCGTGA 58.848 37.037 23.81 3.27 38.32 4.35
290 291 7.899178 TCTAGCTAGATAGATCTTTCGTGAG 57.101 40.000 19.72 4.68 38.32 3.51
291 292 5.371115 AGCTAGATAGATCTTTCGTGAGC 57.629 43.478 20.01 20.01 38.32 4.26
292 293 4.824537 AGCTAGATAGATCTTTCGTGAGCA 59.175 41.667 24.86 0.96 38.32 4.26
293 294 5.476599 AGCTAGATAGATCTTTCGTGAGCAT 59.523 40.000 24.86 14.98 38.32 3.79
294 295 6.657117 AGCTAGATAGATCTTTCGTGAGCATA 59.343 38.462 24.86 7.64 38.32 3.14
295 296 6.966632 GCTAGATAGATCTTTCGTGAGCATAG 59.033 42.308 21.42 12.34 38.32 2.23
296 297 6.266168 AGATAGATCTTTCGTGAGCATAGG 57.734 41.667 0.00 0.00 31.97 2.57
297 298 6.007076 AGATAGATCTTTCGTGAGCATAGGA 58.993 40.000 0.00 0.00 31.97 2.94
298 299 6.491745 AGATAGATCTTTCGTGAGCATAGGAA 59.508 38.462 0.00 0.00 31.97 3.36
299 300 5.543507 AGATCTTTCGTGAGCATAGGAAT 57.456 39.130 0.00 0.00 0.00 3.01
300 301 5.923204 AGATCTTTCGTGAGCATAGGAATT 58.077 37.500 0.00 0.00 0.00 2.17
301 302 6.352516 AGATCTTTCGTGAGCATAGGAATTT 58.647 36.000 0.00 0.00 0.00 1.82
302 303 6.825721 AGATCTTTCGTGAGCATAGGAATTTT 59.174 34.615 0.00 0.00 0.00 1.82
303 304 6.817765 TCTTTCGTGAGCATAGGAATTTTT 57.182 33.333 0.00 0.00 0.00 1.94
327 328 7.979115 TTTTATAATTGCATGCTACGTTTCC 57.021 32.000 20.33 0.00 0.00 3.13
328 329 2.939460 AATTGCATGCTACGTTTCCC 57.061 45.000 20.33 0.00 0.00 3.97
329 330 1.832883 ATTGCATGCTACGTTTCCCA 58.167 45.000 20.33 0.00 0.00 4.37
330 331 1.610363 TTGCATGCTACGTTTCCCAA 58.390 45.000 20.33 0.00 0.00 4.12
331 332 0.878416 TGCATGCTACGTTTCCCAAC 59.122 50.000 20.33 0.00 0.00 3.77
332 333 0.878416 GCATGCTACGTTTCCCAACA 59.122 50.000 11.37 0.00 32.54 3.33
335 336 0.881159 TGCTACGTTTCCCAACACCG 60.881 55.000 0.00 0.00 32.54 4.94
360 361 1.135112 CACCGACGATTGAGATCACCA 60.135 52.381 0.00 0.00 32.33 4.17
421 422 0.682855 CTTGGGGCGGCAAGGATTTA 60.683 55.000 12.47 0.00 0.00 1.40
493 494 7.396055 CACTTGGAGTAATATTTTCCCTGGAAA 59.604 37.037 7.26 7.26 41.69 3.13
504 505 3.169512 TCCCTGGAAACCAATTCTTCC 57.830 47.619 0.00 4.25 41.37 3.46
505 506 2.721906 TCCCTGGAAACCAATTCTTCCT 59.278 45.455 0.00 0.00 41.52 3.36
506 507 3.142028 TCCCTGGAAACCAATTCTTCCTT 59.858 43.478 0.00 0.00 41.52 3.36
507 508 3.511540 CCCTGGAAACCAATTCTTCCTTC 59.488 47.826 0.00 0.00 41.52 3.46
508 509 4.411013 CCTGGAAACCAATTCTTCCTTCT 58.589 43.478 10.40 0.00 41.52 2.85
509 510 4.835056 CCTGGAAACCAATTCTTCCTTCTT 59.165 41.667 10.40 0.00 41.52 2.52
510 511 5.047731 CCTGGAAACCAATTCTTCCTTCTTC 60.048 44.000 10.40 0.00 41.52 2.87
528 529 5.856126 TCTTCAATGGTCATAAACACGAC 57.144 39.130 0.00 0.00 0.00 4.34
566 569 3.354948 ACCAAAAACGATAGGGGGTAC 57.645 47.619 0.00 0.00 43.77 3.34
593 596 9.030301 AGTACTTTGCAACAAATTGAAATACAC 57.970 29.630 0.00 0.00 38.15 2.90
629 632 7.688918 TTTACTACGGGGAAATAGGGATTAA 57.311 36.000 0.00 0.00 0.00 1.40
657 661 2.930826 ATAGGGGGTGTAATTGCTCG 57.069 50.000 0.00 0.00 0.00 5.03
664 668 4.196971 GGGGTGTAATTGCTCGTAAATCT 58.803 43.478 0.00 0.00 0.00 2.40
665 669 5.362263 GGGGTGTAATTGCTCGTAAATCTA 58.638 41.667 0.00 0.00 0.00 1.98
679 684 7.148787 GCTCGTAAATCTAACAATATTAGCGCT 60.149 37.037 17.26 17.26 0.00 5.92
709 714 4.385358 AATTGCCAGAGAAAACAAACGT 57.615 36.364 0.00 0.00 0.00 3.99
768 773 2.028130 CAGTCCACCTAATCTCTCGCT 58.972 52.381 0.00 0.00 0.00 4.93
805 811 3.870723 TGATGTAACGCACTGAACAAC 57.129 42.857 0.00 0.00 0.00 3.32
830 860 1.202794 TGTAACTGAACCGGGGTTTCC 60.203 52.381 6.32 0.00 38.60 3.13
879 909 1.939934 CGATGCGCTTAATTCCTTCCA 59.060 47.619 9.73 0.00 0.00 3.53
1333 1649 1.006922 GCAAGCAAGAAGGGTGCAC 60.007 57.895 8.80 8.80 44.74 4.57
1334 1650 1.737355 GCAAGCAAGAAGGGTGCACA 61.737 55.000 20.43 0.00 44.74 4.57
1498 1817 9.385902 CAACGTTATTAATTTCCATATCTGCTG 57.614 33.333 0.00 0.00 0.00 4.41
1505 1824 5.579753 ATTTCCATATCTGCTGAGTGGAT 57.420 39.130 22.62 12.01 39.25 3.41
1679 5772 2.288825 TGACCTCTCGCAGTAAAACCTG 60.289 50.000 0.00 0.00 35.49 4.00
2061 6624 2.666317 TCTCATAATGCTCGAGGGTGA 58.334 47.619 15.58 0.00 0.00 4.02
2064 6627 3.732212 TCATAATGCTCGAGGGTGAATG 58.268 45.455 15.58 0.00 0.00 2.67
2215 6778 4.223953 AGTCAGGTCTAGAGAAACCAACA 58.776 43.478 0.00 0.00 38.06 3.33
2216 6779 4.282195 AGTCAGGTCTAGAGAAACCAACAG 59.718 45.833 0.00 0.00 38.06 3.16
2232 6795 2.879103 ACAGGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 0.00 2.34
2260 6823 3.728373 GTACCCCCAGCCCACCAG 61.728 72.222 0.00 0.00 0.00 4.00
2261 6824 3.948360 TACCCCCAGCCCACCAGA 61.948 66.667 0.00 0.00 0.00 3.86
2264 6827 2.935481 CCCCAGCCCACCAGAGAA 60.935 66.667 0.00 0.00 0.00 2.87
2274 6837 3.403038 CCCACCAGAGAACAAACTACAG 58.597 50.000 0.00 0.00 0.00 2.74
2288 6852 5.606348 AAACTACAGGTTTGCCAATTTGA 57.394 34.783 0.00 0.00 45.29 2.69
2289 6853 5.806654 AACTACAGGTTTGCCAATTTGAT 57.193 34.783 0.00 0.00 33.90 2.57
2290 6854 5.138125 ACTACAGGTTTGCCAATTTGATG 57.862 39.130 0.00 0.00 37.19 3.07
2294 6858 1.994779 GGTTTGCCAATTTGATGCTCG 59.005 47.619 0.00 0.00 34.09 5.03
2301 6865 3.119495 GCCAATTTGATGCTCGTAAAGGT 60.119 43.478 0.00 0.00 0.00 3.50
2308 6872 4.439057 TGATGCTCGTAAAGGTGGAATAC 58.561 43.478 0.00 0.00 0.00 1.89
2311 6875 3.767673 TGCTCGTAAAGGTGGAATACTCT 59.232 43.478 0.00 0.00 0.00 3.24
2322 6886 5.189934 AGGTGGAATACTCTTTTAGTGGAGG 59.810 44.000 0.00 0.00 39.39 4.30
2326 6890 6.107343 GGAATACTCTTTTAGTGGAGGTGAC 58.893 44.000 0.00 0.00 39.39 3.67
2328 6892 2.963782 ACTCTTTTAGTGGAGGTGACGT 59.036 45.455 0.00 0.00 36.93 4.34
2331 6895 2.005370 TTTAGTGGAGGTGACGTCCT 57.995 50.000 23.04 3.89 40.97 3.85
2332 6896 2.885135 TTAGTGGAGGTGACGTCCTA 57.115 50.000 23.04 7.43 38.02 2.94
2338 6902 3.104512 TGGAGGTGACGTCCTATTGATT 58.895 45.455 23.04 0.00 38.02 2.57
2340 6904 4.712829 TGGAGGTGACGTCCTATTGATTAA 59.287 41.667 23.04 0.00 38.02 1.40
2341 6905 5.365605 TGGAGGTGACGTCCTATTGATTAAT 59.634 40.000 23.04 0.00 38.02 1.40
2342 6906 5.696724 GGAGGTGACGTCCTATTGATTAATG 59.303 44.000 16.52 0.00 38.02 1.90
2343 6907 6.462487 GGAGGTGACGTCCTATTGATTAATGA 60.462 42.308 16.52 0.00 38.02 2.57
2344 6908 6.516718 AGGTGACGTCCTATTGATTAATGAG 58.483 40.000 14.12 0.00 35.87 2.90
2345 6909 6.323996 AGGTGACGTCCTATTGATTAATGAGA 59.676 38.462 14.12 0.00 35.87 3.27
2346 6910 7.015682 AGGTGACGTCCTATTGATTAATGAGAT 59.984 37.037 14.12 0.00 35.87 2.75
2348 6912 9.692749 GTGACGTCCTATTGATTAATGAGATTA 57.307 33.333 14.12 0.00 0.00 1.75
2349 6913 9.692749 TGACGTCCTATTGATTAATGAGATTAC 57.307 33.333 14.12 0.00 0.00 1.89
2350 6914 9.141400 GACGTCCTATTGATTAATGAGATTACC 57.859 37.037 3.51 0.00 0.00 2.85
2351 6915 7.813148 ACGTCCTATTGATTAATGAGATTACCG 59.187 37.037 0.00 0.00 0.00 4.02
2352 6916 7.813148 CGTCCTATTGATTAATGAGATTACCGT 59.187 37.037 0.00 0.00 0.00 4.83
2353 6917 8.926710 GTCCTATTGATTAATGAGATTACCGTG 58.073 37.037 0.00 0.00 0.00 4.94
2354 6918 8.094548 TCCTATTGATTAATGAGATTACCGTGG 58.905 37.037 0.00 0.00 0.00 4.94
2358 6922 6.280643 TGATTAATGAGATTACCGTGGTGAG 58.719 40.000 0.72 0.00 0.00 3.51
2376 6940 5.239306 TGGTGAGTTTGTCAATGTGAAGATC 59.761 40.000 0.00 0.00 36.74 2.75
2378 6942 5.239306 GTGAGTTTGTCAATGTGAAGATCCA 59.761 40.000 0.00 0.00 36.74 3.41
2387 6951 0.179084 GTGAAGATCCAATCCGCCGA 60.179 55.000 0.00 0.00 0.00 5.54
2390 6954 0.105039 AAGATCCAATCCGCCGACTC 59.895 55.000 0.00 0.00 0.00 3.36
2393 6957 1.330655 ATCCAATCCGCCGACTCAGT 61.331 55.000 0.00 0.00 0.00 3.41
2394 6958 1.519455 CCAATCCGCCGACTCAGTC 60.519 63.158 0.00 0.00 0.00 3.51
2396 6960 0.526524 CAATCCGCCGACTCAGTCTC 60.527 60.000 2.61 0.00 0.00 3.36
2398 6962 0.681564 ATCCGCCGACTCAGTCTCTT 60.682 55.000 2.61 0.00 0.00 2.85
2399 6963 0.894184 TCCGCCGACTCAGTCTCTTT 60.894 55.000 2.61 0.00 0.00 2.52
2400 6964 0.038159 CCGCCGACTCAGTCTCTTTT 60.038 55.000 2.61 0.00 0.00 2.27
2401 6965 1.605712 CCGCCGACTCAGTCTCTTTTT 60.606 52.381 2.61 0.00 0.00 1.94
2421 6985 2.766345 TTTTGGAAATGGAGGCATGC 57.234 45.000 9.90 9.90 0.00 4.06
2422 6986 0.903942 TTTGGAAATGGAGGCATGCC 59.096 50.000 30.12 30.12 0.00 4.40
2423 6987 0.977108 TTGGAAATGGAGGCATGCCC 60.977 55.000 33.14 23.03 36.58 5.36
2424 6988 2.136229 GGAAATGGAGGCATGCCCC 61.136 63.158 33.14 30.19 36.58 5.80
2425 6989 1.381599 GAAATGGAGGCATGCCCCA 60.382 57.895 34.89 34.89 39.53 4.96
2426 6990 1.382146 AAATGGAGGCATGCCCCAG 60.382 57.895 35.23 0.00 38.93 4.45
2427 6991 4.534824 ATGGAGGCATGCCCCAGC 62.535 66.667 35.23 23.37 38.93 4.85
2434 6998 4.435970 CATGCCCCAGCCTCTGCA 62.436 66.667 0.00 0.00 41.13 4.41
2435 6999 3.426836 ATGCCCCAGCCTCTGCAT 61.427 61.111 0.00 0.00 41.13 3.96
2436 7000 3.432445 ATGCCCCAGCCTCTGCATC 62.432 63.158 0.00 0.00 40.21 3.91
2437 7001 4.119363 GCCCCAGCCTCTGCATCA 62.119 66.667 0.00 0.00 41.13 3.07
2438 7002 2.924640 CCCCAGCCTCTGCATCAT 59.075 61.111 0.00 0.00 41.13 2.45
2439 7003 1.528542 CCCCAGCCTCTGCATCATG 60.529 63.158 0.00 0.00 41.13 3.07
2440 7004 1.530283 CCCAGCCTCTGCATCATGA 59.470 57.895 0.00 0.00 41.13 3.07
2441 7005 0.110678 CCCAGCCTCTGCATCATGAT 59.889 55.000 1.18 1.18 41.13 2.45
2442 7006 1.350019 CCCAGCCTCTGCATCATGATA 59.650 52.381 8.15 0.00 41.13 2.15
2443 7007 2.224695 CCCAGCCTCTGCATCATGATAA 60.225 50.000 8.15 0.00 41.13 1.75
2444 7008 3.561528 CCCAGCCTCTGCATCATGATAAT 60.562 47.826 8.15 0.00 41.13 1.28
2445 7009 3.440522 CCAGCCTCTGCATCATGATAATG 59.559 47.826 8.15 0.00 41.13 1.90
2453 7017 2.923655 GCATCATGATAATGCATGCAGC 59.076 45.455 26.69 15.37 46.93 5.25
2454 7018 3.511699 CATCATGATAATGCATGCAGCC 58.488 45.455 26.69 14.36 44.08 4.85
2455 7019 2.588620 TCATGATAATGCATGCAGCCA 58.411 42.857 26.69 19.16 44.08 4.75
2456 7020 3.161866 TCATGATAATGCATGCAGCCAT 58.838 40.909 26.69 20.39 44.08 4.40
2457 7021 3.192633 TCATGATAATGCATGCAGCCATC 59.807 43.478 26.69 24.18 44.08 3.51
2458 7022 2.871453 TGATAATGCATGCAGCCATCT 58.129 42.857 26.69 4.78 44.83 2.90
2459 7023 3.227614 TGATAATGCATGCAGCCATCTT 58.772 40.909 26.69 16.12 44.83 2.40
2460 7024 4.400120 TGATAATGCATGCAGCCATCTTA 58.600 39.130 26.69 17.76 44.83 2.10
2461 7025 5.014202 TGATAATGCATGCAGCCATCTTAT 58.986 37.500 26.69 21.41 44.83 1.73
2462 7026 5.479027 TGATAATGCATGCAGCCATCTTATT 59.521 36.000 26.69 13.94 44.83 1.40
2463 7027 6.660094 TGATAATGCATGCAGCCATCTTATTA 59.340 34.615 26.69 16.19 44.83 0.98
2464 7028 5.794726 AATGCATGCAGCCATCTTATTAA 57.205 34.783 26.69 0.00 44.83 1.40
2465 7029 5.794726 ATGCATGCAGCCATCTTATTAAA 57.205 34.783 26.69 0.00 44.83 1.52
2466 7030 5.595257 TGCATGCAGCCATCTTATTAAAA 57.405 34.783 18.46 0.00 44.83 1.52
2467 7031 5.975282 TGCATGCAGCCATCTTATTAAAAA 58.025 33.333 18.46 0.00 44.83 1.94
2491 7055 7.611213 AAACCAGAAAGTATCGTCATAAAGG 57.389 36.000 0.00 0.00 0.00 3.11
2492 7056 6.295719 ACCAGAAAGTATCGTCATAAAGGT 57.704 37.500 0.00 0.00 0.00 3.50
2493 7057 6.338937 ACCAGAAAGTATCGTCATAAAGGTC 58.661 40.000 0.00 0.00 0.00 3.85
2494 7058 6.154706 ACCAGAAAGTATCGTCATAAAGGTCT 59.845 38.462 0.00 0.00 0.00 3.85
2495 7059 7.042335 CCAGAAAGTATCGTCATAAAGGTCTT 58.958 38.462 0.00 0.00 0.00 3.01
2496 7060 8.195436 CCAGAAAGTATCGTCATAAAGGTCTTA 58.805 37.037 0.00 0.00 0.00 2.10
2497 7061 9.021863 CAGAAAGTATCGTCATAAAGGTCTTAC 57.978 37.037 0.00 0.00 0.00 2.34
2498 7062 8.746530 AGAAAGTATCGTCATAAAGGTCTTACA 58.253 33.333 0.00 0.00 0.00 2.41
2499 7063 9.362539 GAAAGTATCGTCATAAAGGTCTTACAA 57.637 33.333 0.00 0.00 0.00 2.41
2500 7064 8.699283 AAGTATCGTCATAAAGGTCTTACAAC 57.301 34.615 0.00 0.00 0.00 3.32
2501 7065 8.064336 AGTATCGTCATAAAGGTCTTACAACT 57.936 34.615 0.00 0.00 0.00 3.16
2502 7066 8.189460 AGTATCGTCATAAAGGTCTTACAACTC 58.811 37.037 0.00 0.00 0.00 3.01
2503 7067 5.396484 TCGTCATAAAGGTCTTACAACTCG 58.604 41.667 0.00 0.00 0.00 4.18
2504 7068 5.048504 TCGTCATAAAGGTCTTACAACTCGT 60.049 40.000 0.00 0.00 0.00 4.18
2505 7069 6.149308 TCGTCATAAAGGTCTTACAACTCGTA 59.851 38.462 0.00 0.00 0.00 3.43
2506 7070 6.803320 CGTCATAAAGGTCTTACAACTCGTAA 59.197 38.462 0.00 0.00 37.76 3.18
2507 7071 7.326789 CGTCATAAAGGTCTTACAACTCGTAAA 59.673 37.037 0.00 0.00 39.59 2.01
2508 7072 8.430828 GTCATAAAGGTCTTACAACTCGTAAAC 58.569 37.037 0.00 0.00 39.59 2.01
2509 7073 5.895216 AAAGGTCTTACAACTCGTAAACG 57.105 39.130 0.00 0.00 39.59 3.60
2523 7087 5.203358 TCGTAAACGAAGCAGATCAAATG 57.797 39.130 2.10 0.00 46.30 2.32
2524 7088 4.926832 TCGTAAACGAAGCAGATCAAATGA 59.073 37.500 2.10 0.00 46.30 2.57
2525 7089 5.407084 TCGTAAACGAAGCAGATCAAATGAA 59.593 36.000 2.10 0.00 46.30 2.57
2526 7090 6.073494 TCGTAAACGAAGCAGATCAAATGAAA 60.073 34.615 2.10 0.00 46.30 2.69
2527 7091 6.577055 CGTAAACGAAGCAGATCAAATGAAAA 59.423 34.615 0.00 0.00 43.02 2.29
2528 7092 7.112844 CGTAAACGAAGCAGATCAAATGAAAAA 59.887 33.333 0.00 0.00 43.02 1.94
2529 7093 6.998258 AACGAAGCAGATCAAATGAAAAAG 57.002 33.333 0.00 0.00 0.00 2.27
2530 7094 5.464168 ACGAAGCAGATCAAATGAAAAAGG 58.536 37.500 0.00 0.00 0.00 3.11
2531 7095 5.241506 ACGAAGCAGATCAAATGAAAAAGGA 59.758 36.000 0.00 0.00 0.00 3.36
2532 7096 6.151691 CGAAGCAGATCAAATGAAAAAGGAA 58.848 36.000 0.00 0.00 0.00 3.36
2533 7097 6.642131 CGAAGCAGATCAAATGAAAAAGGAAA 59.358 34.615 0.00 0.00 0.00 3.13
2534 7098 7.169645 CGAAGCAGATCAAATGAAAAAGGAAAA 59.830 33.333 0.00 0.00 0.00 2.29
2535 7099 8.913487 AAGCAGATCAAATGAAAAAGGAAAAT 57.087 26.923 0.00 0.00 0.00 1.82
2536 7100 8.913487 AGCAGATCAAATGAAAAAGGAAAATT 57.087 26.923 0.00 0.00 0.00 1.82
2543 7107 9.558396 TCAAATGAAAAAGGAAAATTACATGCT 57.442 25.926 0.00 0.00 0.00 3.79
2544 7108 9.601971 CAAATGAAAAAGGAAAATTACATGCTG 57.398 29.630 0.00 0.00 0.00 4.41
2545 7109 9.558396 AAATGAAAAAGGAAAATTACATGCTGA 57.442 25.926 0.00 0.00 0.00 4.26
2546 7110 7.945033 TGAAAAAGGAAAATTACATGCTGAC 57.055 32.000 0.00 0.00 0.00 3.51
2547 7111 7.495901 TGAAAAAGGAAAATTACATGCTGACA 58.504 30.769 0.00 0.00 0.00 3.58
2548 7112 7.984050 TGAAAAAGGAAAATTACATGCTGACAA 59.016 29.630 0.00 0.00 0.00 3.18
2549 7113 8.729805 AAAAAGGAAAATTACATGCTGACAAA 57.270 26.923 0.00 0.00 0.00 2.83
2550 7114 7.951530 AAAGGAAAATTACATGCTGACAAAG 57.048 32.000 0.00 0.00 0.00 2.77
2551 7115 6.029346 AGGAAAATTACATGCTGACAAAGG 57.971 37.500 0.00 0.00 0.00 3.11
2552 7116 4.627035 GGAAAATTACATGCTGACAAAGGC 59.373 41.667 0.00 0.00 0.00 4.35
2553 7117 4.870123 AAATTACATGCTGACAAAGGCA 57.130 36.364 0.00 0.00 42.80 4.75
2554 7118 4.870123 AATTACATGCTGACAAAGGCAA 57.130 36.364 0.00 0.00 41.90 4.52
2555 7119 3.641437 TTACATGCTGACAAAGGCAAC 57.359 42.857 0.00 0.00 41.90 4.17
2556 7120 0.675633 ACATGCTGACAAAGGCAACC 59.324 50.000 0.00 0.00 41.90 3.77
2557 7121 0.387622 CATGCTGACAAAGGCAACCG 60.388 55.000 0.00 0.00 41.90 4.44
2558 7122 0.537143 ATGCTGACAAAGGCAACCGA 60.537 50.000 0.00 0.00 41.90 4.69
2559 7123 0.537143 TGCTGACAAAGGCAACCGAT 60.537 50.000 0.00 0.00 35.40 4.18
2560 7124 1.271108 TGCTGACAAAGGCAACCGATA 60.271 47.619 0.00 0.00 35.40 2.92
2561 7125 1.130561 GCTGACAAAGGCAACCGATAC 59.869 52.381 0.00 0.00 37.17 2.24
2562 7126 1.393539 CTGACAAAGGCAACCGATACG 59.606 52.381 0.00 0.00 37.17 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.612247 AAGTGATTCGCGCAGGGCT 62.612 57.895 8.75 0.00 41.64 5.19
1 2 3.100862 GAAGTGATTCGCGCAGGGC 62.101 63.158 8.75 0.00 41.64 5.19
2 3 1.741401 TGAAGTGATTCGCGCAGGG 60.741 57.895 8.75 0.00 44.04 4.45
3 4 1.421485 GTGAAGTGATTCGCGCAGG 59.579 57.895 8.75 0.00 0.00 4.85
4 5 1.291184 TGGTGAAGTGATTCGCGCAG 61.291 55.000 8.75 0.00 32.53 5.18
5 6 0.673333 ATGGTGAAGTGATTCGCGCA 60.673 50.000 8.75 0.00 32.53 6.09
6 7 0.026803 GATGGTGAAGTGATTCGCGC 59.973 55.000 0.00 0.00 32.53 6.86
7 8 1.358877 TGATGGTGAAGTGATTCGCG 58.641 50.000 0.00 0.00 32.53 5.87
8 9 2.033407 CGATGATGGTGAAGTGATTCGC 60.033 50.000 0.00 0.00 0.00 4.70
9 10 3.190079 ACGATGATGGTGAAGTGATTCG 58.810 45.455 0.00 0.00 0.00 3.34
10 11 4.033358 GTGACGATGATGGTGAAGTGATTC 59.967 45.833 0.00 0.00 0.00 2.52
11 12 3.935203 GTGACGATGATGGTGAAGTGATT 59.065 43.478 0.00 0.00 0.00 2.57
12 13 3.525537 GTGACGATGATGGTGAAGTGAT 58.474 45.455 0.00 0.00 0.00 3.06
13 14 2.353704 GGTGACGATGATGGTGAAGTGA 60.354 50.000 0.00 0.00 0.00 3.41
14 15 2.002586 GGTGACGATGATGGTGAAGTG 58.997 52.381 0.00 0.00 0.00 3.16
15 16 1.623311 TGGTGACGATGATGGTGAAGT 59.377 47.619 0.00 0.00 0.00 3.01
16 17 2.002586 GTGGTGACGATGATGGTGAAG 58.997 52.381 0.00 0.00 0.00 3.02
17 18 2.093306 GTGGTGACGATGATGGTGAA 57.907 50.000 0.00 0.00 0.00 3.18
18 19 3.832704 GTGGTGACGATGATGGTGA 57.167 52.632 0.00 0.00 0.00 4.02
42 43 0.109086 AGATGAGTTCCGTCAGCACG 60.109 55.000 0.00 0.00 46.29 5.34
43 44 2.164624 AGTAGATGAGTTCCGTCAGCAC 59.835 50.000 0.00 0.00 35.20 4.40
44 45 2.447443 AGTAGATGAGTTCCGTCAGCA 58.553 47.619 0.00 0.00 35.20 4.41
45 46 3.440228 GAAGTAGATGAGTTCCGTCAGC 58.560 50.000 0.00 0.00 32.06 4.26
46 47 4.035278 GGAAGTAGATGAGTTCCGTCAG 57.965 50.000 0.00 0.00 45.70 3.51
52 53 6.031751 AGTGTCAAGGAAGTAGATGAGTTC 57.968 41.667 0.00 0.00 36.84 3.01
53 54 5.777732 AGAGTGTCAAGGAAGTAGATGAGTT 59.222 40.000 0.00 0.00 0.00 3.01
54 55 5.184864 CAGAGTGTCAAGGAAGTAGATGAGT 59.815 44.000 0.00 0.00 0.00 3.41
55 56 5.649557 CAGAGTGTCAAGGAAGTAGATGAG 58.350 45.833 0.00 0.00 0.00 2.90
56 57 4.081972 GCAGAGTGTCAAGGAAGTAGATGA 60.082 45.833 0.00 0.00 0.00 2.92
57 58 4.081752 AGCAGAGTGTCAAGGAAGTAGATG 60.082 45.833 0.00 0.00 0.00 2.90
58 59 4.081752 CAGCAGAGTGTCAAGGAAGTAGAT 60.082 45.833 0.00 0.00 0.00 1.98
59 60 3.256879 CAGCAGAGTGTCAAGGAAGTAGA 59.743 47.826 0.00 0.00 0.00 2.59
60 61 3.583806 CAGCAGAGTGTCAAGGAAGTAG 58.416 50.000 0.00 0.00 0.00 2.57
61 62 2.300152 CCAGCAGAGTGTCAAGGAAGTA 59.700 50.000 0.00 0.00 0.00 2.24
62 63 1.071385 CCAGCAGAGTGTCAAGGAAGT 59.929 52.381 0.00 0.00 0.00 3.01
63 64 1.345741 TCCAGCAGAGTGTCAAGGAAG 59.654 52.381 0.00 0.00 0.00 3.46
64 65 1.423584 TCCAGCAGAGTGTCAAGGAA 58.576 50.000 0.00 0.00 0.00 3.36
65 66 1.649321 ATCCAGCAGAGTGTCAAGGA 58.351 50.000 0.00 0.00 0.00 3.36
66 67 2.486472 AATCCAGCAGAGTGTCAAGG 57.514 50.000 0.00 0.00 0.00 3.61
67 68 4.825422 TCTTAATCCAGCAGAGTGTCAAG 58.175 43.478 0.00 0.00 0.00 3.02
68 69 4.825422 CTCTTAATCCAGCAGAGTGTCAA 58.175 43.478 0.00 0.00 31.07 3.18
69 70 3.368843 GCTCTTAATCCAGCAGAGTGTCA 60.369 47.826 0.00 0.00 37.06 3.58
70 71 3.118811 AGCTCTTAATCCAGCAGAGTGTC 60.119 47.826 4.53 0.00 38.18 3.67
71 72 2.836981 AGCTCTTAATCCAGCAGAGTGT 59.163 45.455 4.53 0.00 38.18 3.55
72 73 3.456280 GAGCTCTTAATCCAGCAGAGTG 58.544 50.000 6.43 0.00 38.18 3.51
73 74 2.100584 CGAGCTCTTAATCCAGCAGAGT 59.899 50.000 12.85 0.00 38.18 3.24
74 75 2.360483 TCGAGCTCTTAATCCAGCAGAG 59.640 50.000 12.85 0.00 38.18 3.35
75 76 2.360483 CTCGAGCTCTTAATCCAGCAGA 59.640 50.000 12.85 0.00 38.18 4.26
76 77 2.545532 CCTCGAGCTCTTAATCCAGCAG 60.546 54.545 12.85 0.00 38.18 4.24
77 78 1.410517 CCTCGAGCTCTTAATCCAGCA 59.589 52.381 12.85 0.00 38.18 4.41
78 79 1.270041 CCCTCGAGCTCTTAATCCAGC 60.270 57.143 12.85 0.00 35.73 4.85
79 80 1.342819 CCCCTCGAGCTCTTAATCCAG 59.657 57.143 12.85 0.00 0.00 3.86
80 81 1.343075 ACCCCTCGAGCTCTTAATCCA 60.343 52.381 12.85 0.00 0.00 3.41
81 82 1.069358 CACCCCTCGAGCTCTTAATCC 59.931 57.143 12.85 0.00 0.00 3.01
82 83 1.757699 ACACCCCTCGAGCTCTTAATC 59.242 52.381 12.85 0.00 0.00 1.75
83 84 1.757699 GACACCCCTCGAGCTCTTAAT 59.242 52.381 12.85 0.00 0.00 1.40
84 85 1.183549 GACACCCCTCGAGCTCTTAA 58.816 55.000 12.85 0.00 0.00 1.85
85 86 0.039180 TGACACCCCTCGAGCTCTTA 59.961 55.000 12.85 0.00 0.00 2.10
86 87 0.616111 ATGACACCCCTCGAGCTCTT 60.616 55.000 12.85 0.00 0.00 2.85
87 88 1.000993 ATGACACCCCTCGAGCTCT 59.999 57.895 12.85 0.00 0.00 4.09
88 89 1.439644 GATGACACCCCTCGAGCTC 59.560 63.158 6.99 2.73 0.00 4.09
89 90 2.418910 CGATGACACCCCTCGAGCT 61.419 63.158 6.99 0.00 34.41 4.09
90 91 2.105128 CGATGACACCCCTCGAGC 59.895 66.667 6.99 0.00 34.41 5.03
91 92 2.105128 GCGATGACACCCCTCGAG 59.895 66.667 5.13 5.13 34.41 4.04
92 93 3.822192 CGCGATGACACCCCTCGA 61.822 66.667 0.00 0.00 34.41 4.04
94 95 4.148825 AGCGCGATGACACCCCTC 62.149 66.667 12.10 0.00 0.00 4.30
95 96 4.457496 CAGCGCGATGACACCCCT 62.457 66.667 21.79 0.00 0.00 4.79
96 97 3.950794 TTCAGCGCGATGACACCCC 62.951 63.158 28.75 0.00 0.00 4.95
97 98 2.434185 TTCAGCGCGATGACACCC 60.434 61.111 28.75 0.00 0.00 4.61
98 99 2.778679 GTTCAGCGCGATGACACC 59.221 61.111 28.75 14.16 0.00 4.16
99 100 2.372690 ACGTTCAGCGCGATGACAC 61.373 57.895 28.75 24.17 46.11 3.67
100 101 2.049526 ACGTTCAGCGCGATGACA 60.050 55.556 28.75 15.45 46.11 3.58
101 102 2.372690 ACACGTTCAGCGCGATGAC 61.373 57.895 28.75 20.03 46.11 3.06
102 103 2.049526 ACACGTTCAGCGCGATGA 60.050 55.556 25.05 25.05 46.11 2.92
103 104 2.094539 CACACGTTCAGCGCGATG 59.905 61.111 20.14 20.14 46.11 3.84
104 105 3.777925 GCACACGTTCAGCGCGAT 61.778 61.111 12.10 0.00 46.11 4.58
106 107 4.707840 CTGCACACGTTCAGCGCG 62.708 66.667 0.00 0.00 46.11 6.86
107 108 2.881266 TTCTGCACACGTTCAGCGC 61.881 57.895 0.00 0.00 46.11 5.92
109 110 0.233332 GAGTTCTGCACACGTTCAGC 59.767 55.000 4.78 1.26 0.00 4.26
110 111 0.504384 CGAGTTCTGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
111 112 0.874175 CCGAGTTCTGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
112 113 0.596600 TCCGAGTTCTGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
113 114 0.033504 ATCCGAGTTCTGCACACGTT 59.966 50.000 0.00 0.00 37.75 3.99
114 115 0.667487 CATCCGAGTTCTGCACACGT 60.667 55.000 0.00 0.00 37.75 4.49
115 116 0.667487 ACATCCGAGTTCTGCACACG 60.667 55.000 0.00 0.00 39.03 4.49
116 117 0.792640 CACATCCGAGTTCTGCACAC 59.207 55.000 0.00 0.00 0.00 3.82
117 118 0.950555 GCACATCCGAGTTCTGCACA 60.951 55.000 0.00 0.00 0.00 4.57
118 119 0.950555 TGCACATCCGAGTTCTGCAC 60.951 55.000 0.00 0.00 32.97 4.57
119 120 0.671472 CTGCACATCCGAGTTCTGCA 60.671 55.000 0.00 0.00 36.46 4.41
120 121 0.671781 ACTGCACATCCGAGTTCTGC 60.672 55.000 0.00 0.00 0.00 4.26
121 122 2.263077 GTACTGCACATCCGAGTTCTG 58.737 52.381 0.00 0.00 0.00 3.02
122 123 1.135373 CGTACTGCACATCCGAGTTCT 60.135 52.381 0.00 0.00 0.00 3.01
123 124 1.269166 CGTACTGCACATCCGAGTTC 58.731 55.000 0.00 0.00 0.00 3.01
124 125 0.601558 ACGTACTGCACATCCGAGTT 59.398 50.000 0.00 0.00 0.00 3.01
125 126 0.601558 AACGTACTGCACATCCGAGT 59.398 50.000 0.00 0.00 0.00 4.18
126 127 1.269166 GAACGTACTGCACATCCGAG 58.731 55.000 0.00 0.00 0.00 4.63
127 128 0.455464 CGAACGTACTGCACATCCGA 60.455 55.000 0.00 0.00 0.00 4.55
128 129 1.410737 CCGAACGTACTGCACATCCG 61.411 60.000 0.00 0.00 0.00 4.18
129 130 0.389426 ACCGAACGTACTGCACATCC 60.389 55.000 0.00 0.00 0.00 3.51
130 131 1.916000 GTACCGAACGTACTGCACATC 59.084 52.381 0.00 0.00 43.53 3.06
131 132 1.986698 GTACCGAACGTACTGCACAT 58.013 50.000 0.00 0.00 43.53 3.21
132 133 3.477504 GTACCGAACGTACTGCACA 57.522 52.632 0.00 0.00 43.53 4.57
138 139 2.159517 ACCGATCAAGTACCGAACGTAC 60.160 50.000 10.35 0.00 46.69 3.67
139 140 2.083774 ACCGATCAAGTACCGAACGTA 58.916 47.619 10.35 0.00 0.00 3.57
140 141 0.883833 ACCGATCAAGTACCGAACGT 59.116 50.000 10.35 0.00 0.00 3.99
141 142 1.652124 CAACCGATCAAGTACCGAACG 59.348 52.381 5.81 5.81 0.00 3.95
142 143 1.997606 CCAACCGATCAAGTACCGAAC 59.002 52.381 0.00 0.00 0.00 3.95
143 144 1.894466 TCCAACCGATCAAGTACCGAA 59.106 47.619 0.00 0.00 0.00 4.30
144 145 1.548081 TCCAACCGATCAAGTACCGA 58.452 50.000 0.00 0.00 0.00 4.69
145 146 1.997606 GTTCCAACCGATCAAGTACCG 59.002 52.381 0.00 0.00 0.00 4.02
146 147 1.997606 CGTTCCAACCGATCAAGTACC 59.002 52.381 0.00 0.00 0.00 3.34
147 148 2.921754 CTCGTTCCAACCGATCAAGTAC 59.078 50.000 0.00 0.00 33.27 2.73
148 149 2.821378 TCTCGTTCCAACCGATCAAGTA 59.179 45.455 0.00 0.00 33.27 2.24
149 150 1.616865 TCTCGTTCCAACCGATCAAGT 59.383 47.619 0.00 0.00 33.27 3.16
150 151 2.363788 TCTCGTTCCAACCGATCAAG 57.636 50.000 0.00 0.00 33.27 3.02
151 152 2.297880 TCTTCTCGTTCCAACCGATCAA 59.702 45.455 0.00 0.00 33.27 2.57
152 153 1.890489 TCTTCTCGTTCCAACCGATCA 59.110 47.619 0.00 0.00 33.27 2.92
153 154 2.649331 TCTTCTCGTTCCAACCGATC 57.351 50.000 0.00 0.00 33.27 3.69
154 155 2.299297 ACTTCTTCTCGTTCCAACCGAT 59.701 45.455 0.00 0.00 33.27 4.18
155 156 1.684983 ACTTCTTCTCGTTCCAACCGA 59.315 47.619 0.00 0.00 0.00 4.69
156 157 2.150397 ACTTCTTCTCGTTCCAACCG 57.850 50.000 0.00 0.00 0.00 4.44
157 158 4.685165 GTCTAACTTCTTCTCGTTCCAACC 59.315 45.833 0.00 0.00 0.00 3.77
158 159 5.530712 AGTCTAACTTCTTCTCGTTCCAAC 58.469 41.667 0.00 0.00 0.00 3.77
159 160 5.786264 AGTCTAACTTCTTCTCGTTCCAA 57.214 39.130 0.00 0.00 0.00 3.53
160 161 5.766670 TGTAGTCTAACTTCTTCTCGTTCCA 59.233 40.000 0.00 0.00 0.00 3.53
161 162 6.251655 TGTAGTCTAACTTCTTCTCGTTCC 57.748 41.667 0.00 0.00 0.00 3.62
162 163 9.837525 TTTATGTAGTCTAACTTCTTCTCGTTC 57.162 33.333 0.00 0.00 0.00 3.95
163 164 9.623350 GTTTATGTAGTCTAACTTCTTCTCGTT 57.377 33.333 0.00 0.00 0.00 3.85
164 165 8.242739 GGTTTATGTAGTCTAACTTCTTCTCGT 58.757 37.037 0.00 0.00 0.00 4.18
165 166 7.428761 CGGTTTATGTAGTCTAACTTCTTCTCG 59.571 40.741 0.00 0.00 0.00 4.04
166 167 7.220491 GCGGTTTATGTAGTCTAACTTCTTCTC 59.780 40.741 0.00 0.00 0.00 2.87
167 168 7.034397 GCGGTTTATGTAGTCTAACTTCTTCT 58.966 38.462 0.00 0.00 0.00 2.85
168 169 6.020837 CGCGGTTTATGTAGTCTAACTTCTTC 60.021 42.308 0.00 0.00 0.00 2.87
169 170 5.803967 CGCGGTTTATGTAGTCTAACTTCTT 59.196 40.000 0.00 0.00 0.00 2.52
170 171 5.105997 ACGCGGTTTATGTAGTCTAACTTCT 60.106 40.000 12.47 0.00 0.00 2.85
171 172 5.098211 ACGCGGTTTATGTAGTCTAACTTC 58.902 41.667 12.47 0.00 0.00 3.01
172 173 5.064441 ACGCGGTTTATGTAGTCTAACTT 57.936 39.130 12.47 0.00 0.00 2.66
173 174 4.708726 ACGCGGTTTATGTAGTCTAACT 57.291 40.909 12.47 0.00 0.00 2.24
174 175 5.052106 GCTAACGCGGTTTATGTAGTCTAAC 60.052 44.000 12.47 0.00 0.00 2.34
175 176 5.036737 GCTAACGCGGTTTATGTAGTCTAA 58.963 41.667 12.47 0.00 0.00 2.10
176 177 4.096231 TGCTAACGCGGTTTATGTAGTCTA 59.904 41.667 12.47 0.00 39.65 2.59
177 178 3.119388 TGCTAACGCGGTTTATGTAGTCT 60.119 43.478 12.47 0.00 39.65 3.24
178 179 3.181397 TGCTAACGCGGTTTATGTAGTC 58.819 45.455 12.47 0.00 39.65 2.59
179 180 3.235157 TGCTAACGCGGTTTATGTAGT 57.765 42.857 12.47 0.00 39.65 2.73
180 181 4.328667 GTTTGCTAACGCGGTTTATGTAG 58.671 43.478 12.47 0.00 39.65 2.74
181 182 4.324974 GTTTGCTAACGCGGTTTATGTA 57.675 40.909 12.47 0.00 39.65 2.29
182 183 3.191735 GTTTGCTAACGCGGTTTATGT 57.808 42.857 12.47 0.00 39.65 2.29
208 209 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
209 210 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
210 211 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
211 212 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
212 213 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
213 214 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
214 215 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
215 216 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
216 217 1.012841 CTCCACGTACCCTCGTAGAC 58.987 60.000 0.00 0.00 42.27 2.59
217 218 0.904649 TCTCCACGTACCCTCGTAGA 59.095 55.000 0.00 0.00 42.27 2.59
218 219 1.012841 GTCTCCACGTACCCTCGTAG 58.987 60.000 0.00 0.00 42.27 3.51
219 220 0.324614 TGTCTCCACGTACCCTCGTA 59.675 55.000 0.00 0.00 42.27 3.43
220 221 1.073722 TGTCTCCACGTACCCTCGT 59.926 57.895 0.00 0.00 45.10 4.18
221 222 0.959372 AGTGTCTCCACGTACCCTCG 60.959 60.000 0.00 0.00 46.56 4.63
222 223 0.810016 GAGTGTCTCCACGTACCCTC 59.190 60.000 0.00 0.00 46.56 4.30
223 224 0.404812 AGAGTGTCTCCACGTACCCT 59.595 55.000 0.00 0.00 46.56 4.34
224 225 1.201880 GAAGAGTGTCTCCACGTACCC 59.798 57.143 0.00 0.00 46.56 3.69
225 226 1.201880 GGAAGAGTGTCTCCACGTACC 59.798 57.143 0.00 0.00 46.56 3.34
226 227 1.201880 GGGAAGAGTGTCTCCACGTAC 59.798 57.143 0.00 0.00 46.56 3.67
227 228 1.542492 GGGAAGAGTGTCTCCACGTA 58.458 55.000 0.00 0.00 46.56 3.57
228 229 1.186267 GGGGAAGAGTGTCTCCACGT 61.186 60.000 0.00 0.00 46.56 4.49
229 230 0.900647 AGGGGAAGAGTGTCTCCACG 60.901 60.000 0.00 0.00 46.56 4.94
230 231 0.899019 GAGGGGAAGAGTGTCTCCAC 59.101 60.000 0.00 0.00 41.11 4.02
231 232 0.787084 AGAGGGGAAGAGTGTCTCCA 59.213 55.000 0.00 0.00 41.11 3.86
232 233 1.480789 GAGAGGGGAAGAGTGTCTCC 58.519 60.000 0.00 0.00 38.61 3.71
233 234 1.099689 CGAGAGGGGAAGAGTGTCTC 58.900 60.000 0.00 0.00 0.00 3.36
234 235 0.406361 ACGAGAGGGGAAGAGTGTCT 59.594 55.000 0.00 0.00 0.00 3.41
235 236 1.067495 CAACGAGAGGGGAAGAGTGTC 60.067 57.143 0.00 0.00 0.00 3.67
236 237 0.969894 CAACGAGAGGGGAAGAGTGT 59.030 55.000 0.00 0.00 0.00 3.55
237 238 0.390472 GCAACGAGAGGGGAAGAGTG 60.390 60.000 0.00 0.00 0.00 3.51
238 239 0.543174 AGCAACGAGAGGGGAAGAGT 60.543 55.000 0.00 0.00 0.00 3.24
239 240 1.475403 TAGCAACGAGAGGGGAAGAG 58.525 55.000 0.00 0.00 0.00 2.85
240 241 1.757118 CATAGCAACGAGAGGGGAAGA 59.243 52.381 0.00 0.00 0.00 2.87
241 242 1.808133 GCATAGCAACGAGAGGGGAAG 60.808 57.143 0.00 0.00 0.00 3.46
242 243 0.178068 GCATAGCAACGAGAGGGGAA 59.822 55.000 0.00 0.00 0.00 3.97
243 244 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
244 245 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
245 246 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
246 247 2.522836 AGATGCATAGCAACGAGAGG 57.477 50.000 0.00 0.00 43.62 3.69
247 248 3.715495 AGAAGATGCATAGCAACGAGAG 58.285 45.455 0.00 0.00 43.62 3.20
248 249 3.808466 AGAAGATGCATAGCAACGAGA 57.192 42.857 0.00 0.00 43.62 4.04
249 250 3.428198 GCTAGAAGATGCATAGCAACGAG 59.572 47.826 12.50 4.67 43.62 4.18
250 251 3.068732 AGCTAGAAGATGCATAGCAACGA 59.931 43.478 18.17 0.00 43.62 3.85
251 252 3.388308 AGCTAGAAGATGCATAGCAACG 58.612 45.455 18.17 0.59 43.62 4.10
252 253 5.777802 TCTAGCTAGAAGATGCATAGCAAC 58.222 41.667 21.26 0.00 43.62 4.17
253 254 6.602410 ATCTAGCTAGAAGATGCATAGCAA 57.398 37.500 26.62 0.00 43.49 3.91
254 255 7.115414 TCTATCTAGCTAGAAGATGCATAGCA 58.885 38.462 26.62 9.47 43.49 3.49
255 256 7.566760 TCTATCTAGCTAGAAGATGCATAGC 57.433 40.000 26.62 9.90 41.79 2.97
256 257 9.565090 AGATCTATCTAGCTAGAAGATGCATAG 57.435 37.037 31.44 24.16 35.36 2.23
257 258 9.919416 AAGATCTATCTAGCTAGAAGATGCATA 57.081 33.333 31.44 18.66 35.76 3.14
258 259 8.827832 AAGATCTATCTAGCTAGAAGATGCAT 57.172 34.615 31.44 21.75 35.76 3.96
259 260 8.648698 AAAGATCTATCTAGCTAGAAGATGCA 57.351 34.615 31.44 16.32 35.76 3.96
260 261 7.910162 CGAAAGATCTATCTAGCTAGAAGATGC 59.090 40.741 31.44 25.21 35.76 3.91
261 262 8.946085 ACGAAAGATCTATCTAGCTAGAAGATG 58.054 37.037 31.44 24.00 35.76 2.90
262 263 8.946085 CACGAAAGATCTATCTAGCTAGAAGAT 58.054 37.037 29.13 29.13 35.76 2.40
263 264 8.151596 TCACGAAAGATCTATCTAGCTAGAAGA 58.848 37.037 26.62 25.59 35.76 2.87
264 265 8.317891 TCACGAAAGATCTATCTAGCTAGAAG 57.682 38.462 26.62 22.02 35.76 2.85
265 266 7.094975 GCTCACGAAAGATCTATCTAGCTAGAA 60.095 40.741 26.62 11.67 35.76 2.10
266 267 6.370442 GCTCACGAAAGATCTATCTAGCTAGA 59.630 42.308 25.23 25.23 35.76 2.43
267 268 6.148645 TGCTCACGAAAGATCTATCTAGCTAG 59.851 42.308 15.01 15.01 35.76 3.42
268 269 5.998363 TGCTCACGAAAGATCTATCTAGCTA 59.002 40.000 0.00 0.00 35.76 3.32
269 270 4.824537 TGCTCACGAAAGATCTATCTAGCT 59.175 41.667 0.00 0.00 35.76 3.32
270 271 5.114785 TGCTCACGAAAGATCTATCTAGC 57.885 43.478 0.00 1.85 35.76 3.42
271 272 7.335673 TCCTATGCTCACGAAAGATCTATCTAG 59.664 40.741 0.00 0.00 35.76 2.43
272 273 7.168905 TCCTATGCTCACGAAAGATCTATCTA 58.831 38.462 0.00 0.00 35.76 1.98
273 274 6.007076 TCCTATGCTCACGAAAGATCTATCT 58.993 40.000 0.00 0.00 39.22 1.98
274 275 6.260870 TCCTATGCTCACGAAAGATCTATC 57.739 41.667 0.00 0.00 0.00 2.08
275 276 6.656632 TTCCTATGCTCACGAAAGATCTAT 57.343 37.500 0.00 0.00 0.00 1.98
276 277 6.656632 ATTCCTATGCTCACGAAAGATCTA 57.343 37.500 0.00 0.00 0.00 1.98
277 278 5.543507 ATTCCTATGCTCACGAAAGATCT 57.456 39.130 0.00 0.00 0.00 2.75
278 279 6.610741 AAATTCCTATGCTCACGAAAGATC 57.389 37.500 0.00 0.00 0.00 2.75
279 280 7.396540 AAAAATTCCTATGCTCACGAAAGAT 57.603 32.000 0.00 0.00 0.00 2.40
280 281 6.817765 AAAAATTCCTATGCTCACGAAAGA 57.182 33.333 0.00 0.00 0.00 2.52
302 303 7.489757 GGGAAACGTAGCATGCAATTATAAAAA 59.510 33.333 21.98 0.00 0.00 1.94
303 304 6.975772 GGGAAACGTAGCATGCAATTATAAAA 59.024 34.615 21.98 0.00 0.00 1.52
304 305 6.095580 TGGGAAACGTAGCATGCAATTATAAA 59.904 34.615 21.98 0.00 0.00 1.40
305 306 5.590663 TGGGAAACGTAGCATGCAATTATAA 59.409 36.000 21.98 0.00 0.00 0.98
306 307 5.126779 TGGGAAACGTAGCATGCAATTATA 58.873 37.500 21.98 0.00 0.00 0.98
307 308 3.951037 TGGGAAACGTAGCATGCAATTAT 59.049 39.130 21.98 0.16 0.00 1.28
308 309 3.348119 TGGGAAACGTAGCATGCAATTA 58.652 40.909 21.98 0.00 0.00 1.40
309 310 2.166829 TGGGAAACGTAGCATGCAATT 58.833 42.857 21.98 6.80 0.00 2.32
310 311 1.832883 TGGGAAACGTAGCATGCAAT 58.167 45.000 21.98 1.90 0.00 3.56
311 312 1.268352 GTTGGGAAACGTAGCATGCAA 59.732 47.619 21.98 0.00 0.00 4.08
312 313 0.878416 GTTGGGAAACGTAGCATGCA 59.122 50.000 21.98 2.77 0.00 3.96
313 314 0.878416 TGTTGGGAAACGTAGCATGC 59.122 50.000 10.51 10.51 0.00 4.06
314 315 1.199097 GGTGTTGGGAAACGTAGCATG 59.801 52.381 0.00 0.00 0.00 4.06
315 316 1.530323 GGTGTTGGGAAACGTAGCAT 58.470 50.000 0.00 0.00 0.00 3.79
316 317 0.881159 CGGTGTTGGGAAACGTAGCA 60.881 55.000 0.00 0.00 0.00 3.49
317 318 0.881600 ACGGTGTTGGGAAACGTAGC 60.882 55.000 0.00 0.00 35.85 3.58
318 319 1.142474 GACGGTGTTGGGAAACGTAG 58.858 55.000 0.00 0.00 37.96 3.51
319 320 0.463204 TGACGGTGTTGGGAAACGTA 59.537 50.000 0.00 0.00 37.96 3.57
320 321 0.179040 ATGACGGTGTTGGGAAACGT 60.179 50.000 0.00 0.00 40.85 3.99
321 322 0.515564 GATGACGGTGTTGGGAAACG 59.484 55.000 0.00 0.00 0.00 3.60
322 323 1.265905 GTGATGACGGTGTTGGGAAAC 59.734 52.381 0.00 0.00 0.00 2.78
323 324 1.600023 GTGATGACGGTGTTGGGAAA 58.400 50.000 0.00 0.00 0.00 3.13
324 325 0.250553 GGTGATGACGGTGTTGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
325 326 1.373435 GGTGATGACGGTGTTGGGA 59.627 57.895 0.00 0.00 0.00 4.37
326 327 2.032634 CGGTGATGACGGTGTTGGG 61.033 63.158 0.00 0.00 0.00 4.12
327 328 1.005512 TCGGTGATGACGGTGTTGG 60.006 57.895 0.00 0.00 0.00 3.77
328 329 2.150424 GTCGGTGATGACGGTGTTG 58.850 57.895 0.00 0.00 0.00 3.33
329 330 4.667420 GTCGGTGATGACGGTGTT 57.333 55.556 0.00 0.00 0.00 3.32
335 336 2.561733 TCTCAATCGTCGGTGATGAC 57.438 50.000 0.00 0.00 29.89 3.06
360 361 1.210204 TCCAGCAGCTTCCCTCCAAT 61.210 55.000 0.00 0.00 0.00 3.16
493 494 5.397360 ACCATTGAAGAAGGAAGAATTGGT 58.603 37.500 0.00 0.00 0.00 3.67
504 505 6.147821 AGTCGTGTTTATGACCATTGAAGAAG 59.852 38.462 0.00 0.00 42.60 2.85
505 506 5.995282 AGTCGTGTTTATGACCATTGAAGAA 59.005 36.000 0.00 0.00 42.60 2.52
506 507 5.547465 AGTCGTGTTTATGACCATTGAAGA 58.453 37.500 0.00 0.00 42.60 2.87
507 508 5.862924 AGTCGTGTTTATGACCATTGAAG 57.137 39.130 0.00 0.00 42.60 3.02
508 509 6.627395 AAAGTCGTGTTTATGACCATTGAA 57.373 33.333 0.00 0.00 42.60 2.69
509 510 6.038825 ACAAAAGTCGTGTTTATGACCATTGA 59.961 34.615 15.73 0.00 42.60 2.57
510 511 6.205784 ACAAAAGTCGTGTTTATGACCATTG 58.794 36.000 0.00 0.00 42.60 2.82
566 569 9.029243 TGTATTTCAATTTGTTGCAAAGTACTG 57.971 29.630 0.00 0.00 0.00 2.74
593 596 7.795482 TCCCCGTAGTAAATAATGTTTCATG 57.205 36.000 0.00 0.00 0.00 3.07
657 661 8.306680 TCCAGCGCTAATATTGTTAGATTTAC 57.693 34.615 10.99 0.00 0.00 2.01
679 684 8.359875 TGTTTTCTCTGGCAATTAATAATCCA 57.640 30.769 0.00 0.00 0.00 3.41
689 694 4.023193 CCTACGTTTGTTTTCTCTGGCAAT 60.023 41.667 0.00 0.00 0.00 3.56
709 714 0.823460 TCTGCATGTCACGATGCCTA 59.177 50.000 9.00 0.00 46.98 3.93
768 773 5.939764 ACATCATCTGCTACTAAGTCCAA 57.060 39.130 0.00 0.00 0.00 3.53
805 811 0.321298 CCCGGTTCAGTTACACCCTG 60.321 60.000 0.00 0.00 0.00 4.45
830 860 7.432869 TGTTTCCTTGTATTTCTCCATTGTTG 58.567 34.615 0.00 0.00 0.00 3.33
892 922 9.567776 TGGATTAAAGTCACATTAAGTTCTTCA 57.432 29.630 0.00 0.00 0.00 3.02
1125 1441 2.769095 AGCACTTTAGACCTCCTCATCC 59.231 50.000 0.00 0.00 0.00 3.51
1333 1649 4.904466 GCTTCTGGCAATTGGCTG 57.096 55.556 29.53 27.99 44.01 4.85
1474 1790 8.902540 TCAGCAGATATGGAAATTAATAACGT 57.097 30.769 0.00 0.00 0.00 3.99
1480 1796 6.899089 TCCACTCAGCAGATATGGAAATTAA 58.101 36.000 9.13 0.00 36.50 1.40
1505 1824 2.188062 GTCCCAAACATGGACGGTAA 57.812 50.000 0.00 0.00 42.63 2.85
1519 1844 5.936187 ACATTTTGAATATGCATGTCCCA 57.064 34.783 10.16 1.85 0.00 4.37
2090 6653 4.039730 TCCAATGTACCAAAAACATGGGTG 59.960 41.667 9.00 0.00 45.30 4.61
2215 6778 2.053747 TCCTAACCATCCAACCACCT 57.946 50.000 0.00 0.00 0.00 4.00
2216 6779 2.654863 CATCCTAACCATCCAACCACC 58.345 52.381 0.00 0.00 0.00 4.61
2247 6810 2.935481 TTCTCTGGTGGGCTGGGG 60.935 66.667 0.00 0.00 0.00 4.96
2274 6837 1.994779 CGAGCATCAAATTGGCAAACC 59.005 47.619 3.01 0.00 33.17 3.27
2282 6845 4.331968 TCCACCTTTACGAGCATCAAATT 58.668 39.130 0.00 0.00 33.17 1.82
2283 6846 3.950397 TCCACCTTTACGAGCATCAAAT 58.050 40.909 0.00 0.00 33.17 2.32
2288 6852 4.406003 AGAGTATTCCACCTTTACGAGCAT 59.594 41.667 0.00 0.00 0.00 3.79
2289 6853 3.767673 AGAGTATTCCACCTTTACGAGCA 59.232 43.478 0.00 0.00 0.00 4.26
2290 6854 4.388378 AGAGTATTCCACCTTTACGAGC 57.612 45.455 0.00 0.00 0.00 5.03
2294 6858 8.098912 TCCACTAAAAGAGTATTCCACCTTTAC 58.901 37.037 0.00 0.00 35.64 2.01
2301 6865 5.783360 TCACCTCCACTAAAAGAGTATTCCA 59.217 40.000 0.00 0.00 35.64 3.53
2308 6872 3.576648 GACGTCACCTCCACTAAAAGAG 58.423 50.000 11.55 0.00 0.00 2.85
2311 6875 2.322658 AGGACGTCACCTCCACTAAAA 58.677 47.619 18.91 0.00 34.98 1.52
2322 6886 8.594881 AATCTCATTAATCAATAGGACGTCAC 57.405 34.615 18.91 6.91 0.00 3.67
2326 6890 7.813148 ACGGTAATCTCATTAATCAATAGGACG 59.187 37.037 0.00 0.00 0.00 4.79
2328 6892 8.094548 CCACGGTAATCTCATTAATCAATAGGA 58.905 37.037 0.00 0.00 0.00 2.94
2331 6895 8.425703 TCACCACGGTAATCTCATTAATCAATA 58.574 33.333 0.00 0.00 0.00 1.90
2332 6896 7.279615 TCACCACGGTAATCTCATTAATCAAT 58.720 34.615 0.00 0.00 0.00 2.57
2338 6902 5.670792 AACTCACCACGGTAATCTCATTA 57.329 39.130 0.00 0.00 0.00 1.90
2340 6904 4.253685 CAAACTCACCACGGTAATCTCAT 58.746 43.478 0.00 0.00 0.00 2.90
2341 6905 3.070446 ACAAACTCACCACGGTAATCTCA 59.930 43.478 0.00 0.00 0.00 3.27
2342 6906 3.660865 ACAAACTCACCACGGTAATCTC 58.339 45.455 0.00 0.00 0.00 2.75
2343 6907 3.070446 TGACAAACTCACCACGGTAATCT 59.930 43.478 0.00 0.00 0.00 2.40
2344 6908 3.395639 TGACAAACTCACCACGGTAATC 58.604 45.455 0.00 0.00 0.00 1.75
2345 6909 3.478857 TGACAAACTCACCACGGTAAT 57.521 42.857 0.00 0.00 0.00 1.89
2346 6910 2.983907 TGACAAACTCACCACGGTAA 57.016 45.000 0.00 0.00 0.00 2.85
2348 6912 1.946768 CATTGACAAACTCACCACGGT 59.053 47.619 0.00 0.00 0.00 4.83
2349 6913 1.946768 ACATTGACAAACTCACCACGG 59.053 47.619 0.00 0.00 0.00 4.94
2350 6914 2.611751 TCACATTGACAAACTCACCACG 59.388 45.455 0.00 0.00 0.00 4.94
2351 6915 4.335315 TCTTCACATTGACAAACTCACCAC 59.665 41.667 0.00 0.00 0.00 4.16
2352 6916 4.522114 TCTTCACATTGACAAACTCACCA 58.478 39.130 0.00 0.00 0.00 4.17
2353 6917 5.335191 GGATCTTCACATTGACAAACTCACC 60.335 44.000 0.00 0.00 0.00 4.02
2354 6918 5.239306 TGGATCTTCACATTGACAAACTCAC 59.761 40.000 0.00 0.00 0.00 3.51
2358 6922 6.095377 GGATTGGATCTTCACATTGACAAAC 58.905 40.000 0.00 0.00 0.00 2.93
2376 6940 1.519455 GACTGAGTCGGCGGATTGG 60.519 63.158 7.21 0.00 0.00 3.16
2378 6942 0.681564 AGAGACTGAGTCGGCGGATT 60.682 55.000 7.21 0.00 37.67 3.01
2401 6965 2.290197 GGCATGCCTCCATTTCCAAAAA 60.290 45.455 29.98 0.00 0.00 1.94
2402 6966 1.278699 GGCATGCCTCCATTTCCAAAA 59.721 47.619 29.98 0.00 0.00 2.44
2403 6967 0.903942 GGCATGCCTCCATTTCCAAA 59.096 50.000 29.98 0.00 0.00 3.28
2404 6968 0.977108 GGGCATGCCTCCATTTCCAA 60.977 55.000 34.70 0.00 36.10 3.53
2405 6969 1.381599 GGGCATGCCTCCATTTCCA 60.382 57.895 34.70 0.00 36.10 3.53
2406 6970 2.136229 GGGGCATGCCTCCATTTCC 61.136 63.158 34.70 21.88 36.10 3.13
2407 6971 1.381599 TGGGGCATGCCTCCATTTC 60.382 57.895 33.70 15.93 35.15 2.17
2408 6972 1.382146 CTGGGGCATGCCTCCATTT 60.382 57.895 33.76 0.00 36.39 2.32
2409 6973 2.281091 CTGGGGCATGCCTCCATT 59.719 61.111 33.76 0.00 36.39 3.16
2410 6974 4.534824 GCTGGGGCATGCCTCCAT 62.535 66.667 33.76 0.00 36.39 3.41
2417 6981 3.733507 ATGCAGAGGCTGGGGCATG 62.734 63.158 14.17 0.00 44.64 4.06
2418 6982 3.426836 ATGCAGAGGCTGGGGCAT 61.427 61.111 10.35 10.35 41.81 4.40
2419 6983 4.119363 GATGCAGAGGCTGGGGCA 62.119 66.667 6.76 6.76 41.91 5.36
2420 6984 3.432445 ATGATGCAGAGGCTGGGGC 62.432 63.158 0.00 0.00 41.91 5.80
2421 6985 1.528542 CATGATGCAGAGGCTGGGG 60.529 63.158 0.00 0.00 41.91 4.96
2422 6986 0.110678 ATCATGATGCAGAGGCTGGG 59.889 55.000 7.59 0.00 41.91 4.45
2423 6987 2.853235 TATCATGATGCAGAGGCTGG 57.147 50.000 18.72 0.00 41.91 4.85
2424 6988 3.119814 GCATTATCATGATGCAGAGGCTG 60.120 47.826 18.72 5.19 46.96 4.85
2425 6989 3.082548 GCATTATCATGATGCAGAGGCT 58.917 45.455 18.72 0.00 46.96 4.58
2426 6990 3.489180 GCATTATCATGATGCAGAGGC 57.511 47.619 18.72 10.52 46.96 4.70
2433 6997 3.056891 TGGCTGCATGCATTATCATGATG 60.057 43.478 22.97 6.35 44.94 3.07
2434 6998 3.161866 TGGCTGCATGCATTATCATGAT 58.838 40.909 22.97 13.81 44.94 2.45
2435 6999 2.588620 TGGCTGCATGCATTATCATGA 58.411 42.857 22.97 0.00 44.94 3.07
2436 7000 3.193479 AGATGGCTGCATGCATTATCATG 59.807 43.478 22.97 8.76 44.93 3.07
2437 7001 3.431415 AGATGGCTGCATGCATTATCAT 58.569 40.909 22.97 20.13 45.15 2.45
2438 7002 2.871453 AGATGGCTGCATGCATTATCA 58.129 42.857 22.97 16.48 45.15 2.15
2439 7003 3.936372 AAGATGGCTGCATGCATTATC 57.064 42.857 22.97 22.20 45.15 1.75
2440 7004 5.995565 AATAAGATGGCTGCATGCATTAT 57.004 34.783 22.97 17.27 45.15 1.28
2441 7005 6.897706 TTAATAAGATGGCTGCATGCATTA 57.102 33.333 22.97 15.71 45.15 1.90
2442 7006 5.794726 TTAATAAGATGGCTGCATGCATT 57.205 34.783 22.97 13.89 45.15 3.56
2443 7007 5.794726 TTTAATAAGATGGCTGCATGCAT 57.205 34.783 22.97 5.92 45.15 3.96
2444 7008 5.595257 TTTTAATAAGATGGCTGCATGCA 57.405 34.783 21.29 21.29 45.15 3.96
2465 7029 8.512138 CCTTTATGACGATACTTTCTGGTTTTT 58.488 33.333 0.00 0.00 0.00 1.94
2466 7030 7.664318 ACCTTTATGACGATACTTTCTGGTTTT 59.336 33.333 0.00 0.00 0.00 2.43
2467 7031 7.166167 ACCTTTATGACGATACTTTCTGGTTT 58.834 34.615 0.00 0.00 0.00 3.27
2468 7032 6.708285 ACCTTTATGACGATACTTTCTGGTT 58.292 36.000 0.00 0.00 0.00 3.67
2469 7033 6.154706 AGACCTTTATGACGATACTTTCTGGT 59.845 38.462 0.00 0.00 0.00 4.00
2470 7034 6.574350 AGACCTTTATGACGATACTTTCTGG 58.426 40.000 0.00 0.00 0.00 3.86
2471 7035 9.021863 GTAAGACCTTTATGACGATACTTTCTG 57.978 37.037 0.00 0.00 0.00 3.02
2472 7036 8.746530 TGTAAGACCTTTATGACGATACTTTCT 58.253 33.333 0.00 0.00 0.00 2.52
2473 7037 8.922058 TGTAAGACCTTTATGACGATACTTTC 57.078 34.615 0.00 0.00 0.00 2.62
2474 7038 9.148104 GTTGTAAGACCTTTATGACGATACTTT 57.852 33.333 0.00 0.00 0.00 2.66
2475 7039 8.529476 AGTTGTAAGACCTTTATGACGATACTT 58.471 33.333 0.00 0.00 0.00 2.24
2476 7040 8.064336 AGTTGTAAGACCTTTATGACGATACT 57.936 34.615 0.00 0.00 0.00 2.12
2477 7041 7.165483 CGAGTTGTAAGACCTTTATGACGATAC 59.835 40.741 0.00 0.00 0.00 2.24
2478 7042 7.148188 ACGAGTTGTAAGACCTTTATGACGATA 60.148 37.037 0.00 0.00 0.00 2.92
2479 7043 6.034591 CGAGTTGTAAGACCTTTATGACGAT 58.965 40.000 0.00 0.00 0.00 3.73
2480 7044 5.048504 ACGAGTTGTAAGACCTTTATGACGA 60.049 40.000 0.00 0.00 0.00 4.20
2481 7045 5.159209 ACGAGTTGTAAGACCTTTATGACG 58.841 41.667 0.00 0.00 0.00 4.35
2482 7046 8.430828 GTTTACGAGTTGTAAGACCTTTATGAC 58.569 37.037 3.21 0.00 43.63 3.06
2483 7047 7.326789 CGTTTACGAGTTGTAAGACCTTTATGA 59.673 37.037 3.21 0.00 43.63 2.15
2484 7048 7.326789 TCGTTTACGAGTTGTAAGACCTTTATG 59.673 37.037 0.03 0.00 43.63 1.90
2485 7049 7.370383 TCGTTTACGAGTTGTAAGACCTTTAT 58.630 34.615 0.03 0.00 43.63 1.40
2486 7050 6.734137 TCGTTTACGAGTTGTAAGACCTTTA 58.266 36.000 0.03 0.00 43.63 1.85
2487 7051 5.591099 TCGTTTACGAGTTGTAAGACCTTT 58.409 37.500 0.03 0.00 43.63 3.11
2488 7052 5.186996 TCGTTTACGAGTTGTAAGACCTT 57.813 39.130 0.03 0.00 43.63 3.50
2489 7053 4.836125 TCGTTTACGAGTTGTAAGACCT 57.164 40.909 0.03 0.00 43.63 3.85
2502 7066 5.203358 TCATTTGATCTGCTTCGTTTACG 57.797 39.130 0.00 0.00 41.45 3.18
2503 7067 7.851822 TTTTCATTTGATCTGCTTCGTTTAC 57.148 32.000 0.00 0.00 0.00 2.01
2504 7068 7.594758 CCTTTTTCATTTGATCTGCTTCGTTTA 59.405 33.333 0.00 0.00 0.00 2.01
2505 7069 6.421801 CCTTTTTCATTTGATCTGCTTCGTTT 59.578 34.615 0.00 0.00 0.00 3.60
2506 7070 5.922544 CCTTTTTCATTTGATCTGCTTCGTT 59.077 36.000 0.00 0.00 0.00 3.85
2507 7071 5.241506 TCCTTTTTCATTTGATCTGCTTCGT 59.758 36.000 0.00 0.00 0.00 3.85
2508 7072 5.702865 TCCTTTTTCATTTGATCTGCTTCG 58.297 37.500 0.00 0.00 0.00 3.79
2509 7073 7.951530 TTTCCTTTTTCATTTGATCTGCTTC 57.048 32.000 0.00 0.00 0.00 3.86
2510 7074 8.913487 ATTTTCCTTTTTCATTTGATCTGCTT 57.087 26.923 0.00 0.00 0.00 3.91
2511 7075 8.913487 AATTTTCCTTTTTCATTTGATCTGCT 57.087 26.923 0.00 0.00 0.00 4.24
2517 7081 9.558396 AGCATGTAATTTTCCTTTTTCATTTGA 57.442 25.926 0.00 0.00 0.00 2.69
2518 7082 9.601971 CAGCATGTAATTTTCCTTTTTCATTTG 57.398 29.630 0.00 0.00 0.00 2.32
2519 7083 9.558396 TCAGCATGTAATTTTCCTTTTTCATTT 57.442 25.926 0.00 0.00 37.40 2.32
2520 7084 8.992073 GTCAGCATGTAATTTTCCTTTTTCATT 58.008 29.630 0.00 0.00 37.40 2.57
2521 7085 8.149647 TGTCAGCATGTAATTTTCCTTTTTCAT 58.850 29.630 0.00 0.00 37.40 2.57
2522 7086 7.495901 TGTCAGCATGTAATTTTCCTTTTTCA 58.504 30.769 0.00 0.00 37.40 2.69
2523 7087 7.945033 TGTCAGCATGTAATTTTCCTTTTTC 57.055 32.000 0.00 0.00 37.40 2.29
2524 7088 8.729805 TTTGTCAGCATGTAATTTTCCTTTTT 57.270 26.923 0.00 0.00 37.40 1.94
2525 7089 7.442062 CCTTTGTCAGCATGTAATTTTCCTTTT 59.558 33.333 0.00 0.00 37.40 2.27
2526 7090 6.930722 CCTTTGTCAGCATGTAATTTTCCTTT 59.069 34.615 0.00 0.00 37.40 3.11
2527 7091 6.458210 CCTTTGTCAGCATGTAATTTTCCTT 58.542 36.000 0.00 0.00 37.40 3.36
2528 7092 5.567423 GCCTTTGTCAGCATGTAATTTTCCT 60.567 40.000 0.00 0.00 37.40 3.36
2529 7093 4.627035 GCCTTTGTCAGCATGTAATTTTCC 59.373 41.667 0.00 0.00 37.40 3.13
2530 7094 5.229423 TGCCTTTGTCAGCATGTAATTTTC 58.771 37.500 0.00 0.00 37.40 2.29
2531 7095 5.212532 TGCCTTTGTCAGCATGTAATTTT 57.787 34.783 0.00 0.00 37.40 1.82
2532 7096 4.870123 TGCCTTTGTCAGCATGTAATTT 57.130 36.364 0.00 0.00 37.40 1.82
2533 7097 4.559153 GTTGCCTTTGTCAGCATGTAATT 58.441 39.130 0.00 0.00 39.11 1.40
2534 7098 3.056607 GGTTGCCTTTGTCAGCATGTAAT 60.057 43.478 0.00 0.00 39.11 1.89
2535 7099 2.295909 GGTTGCCTTTGTCAGCATGTAA 59.704 45.455 0.00 0.00 39.11 2.41
2536 7100 1.885887 GGTTGCCTTTGTCAGCATGTA 59.114 47.619 0.00 0.00 39.11 2.29
2537 7101 0.675633 GGTTGCCTTTGTCAGCATGT 59.324 50.000 0.00 0.00 39.11 3.21
2538 7102 0.387622 CGGTTGCCTTTGTCAGCATG 60.388 55.000 0.00 0.00 39.11 4.06
2539 7103 0.537143 TCGGTTGCCTTTGTCAGCAT 60.537 50.000 0.00 0.00 39.11 3.79
2540 7104 0.537143 ATCGGTTGCCTTTGTCAGCA 60.537 50.000 0.00 0.00 37.18 4.41
2541 7105 1.130561 GTATCGGTTGCCTTTGTCAGC 59.869 52.381 0.00 0.00 0.00 4.26
2542 7106 1.393539 CGTATCGGTTGCCTTTGTCAG 59.606 52.381 0.00 0.00 0.00 3.51
2543 7107 1.434555 CGTATCGGTTGCCTTTGTCA 58.565 50.000 0.00 0.00 0.00 3.58
2544 7108 0.725117 CCGTATCGGTTGCCTTTGTC 59.275 55.000 0.00 0.00 42.73 3.18
2545 7109 2.849081 CCGTATCGGTTGCCTTTGT 58.151 52.632 0.00 0.00 42.73 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.