Multiple sequence alignment - TraesCS2D01G576100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G576100 chr2D 100.000 4236 0 0 1 4236 639692231 639687996 0.000000e+00 7823.0
1 TraesCS2D01G576100 chr2D 100.000 694 0 0 4499 5192 639687733 639687040 0.000000e+00 1282.0
2 TraesCS2D01G576100 chr2D 100.000 31 0 0 862 892 639691323 639691293 2.020000e-04 58.4
3 TraesCS2D01G576100 chr2D 100.000 31 0 0 909 939 639691370 639691340 2.020000e-04 58.4
4 TraesCS2D01G576100 chr2B 93.615 3602 198 13 644 4234 798826734 798823154 0.000000e+00 5349.0
5 TraesCS2D01G576100 chr2B 91.667 312 24 2 4509 4820 798823054 798822745 1.030000e-116 431.0
6 TraesCS2D01G576100 chr2B 92.282 298 23 0 280 577 798827037 798826740 1.730000e-114 424.0
7 TraesCS2D01G576100 chr2B 91.080 213 16 2 4716 4928 798573784 798573993 8.510000e-73 285.0
8 TraesCS2D01G576100 chr2B 93.889 180 11 0 5011 5190 798822323 798822144 6.620000e-69 272.0
9 TraesCS2D01G576100 chr2B 93.333 180 11 1 5013 5192 798574297 798574475 1.110000e-66 265.0
10 TraesCS2D01G576100 chr2A 91.841 2145 148 12 2099 4236 765174519 765172395 0.000000e+00 2966.0
11 TraesCS2D01G576100 chr2A 92.095 1518 110 8 552 2063 765176028 765174515 0.000000e+00 2130.0
12 TraesCS2D01G576100 chr2A 88.927 289 23 6 4732 5012 765169633 765169346 1.070000e-91 348.0
13 TraesCS2D01G576100 chr2A 93.443 183 11 1 5011 5192 765169092 765168910 2.380000e-68 270.0
14 TraesCS2D01G576100 chr2A 83.951 162 25 1 4535 4696 765169914 765169754 2.500000e-33 154.0
15 TraesCS2D01G576100 chr2A 94.872 39 2 0 854 892 765175679 765175641 1.560000e-05 62.1
16 TraesCS2D01G576100 chr6D 79.922 3322 519 85 914 4145 7284772 7281509 0.000000e+00 2303.0
17 TraesCS2D01G576100 chr6D 86.177 463 52 9 2142 2594 7290582 7290122 1.680000e-134 490.0
18 TraesCS2D01G576100 chr6D 92.908 282 20 0 1 282 28473952 28474233 1.350000e-110 411.0
19 TraesCS2D01G576100 chr6D 74.834 755 157 24 996 1735 7292500 7291764 1.400000e-80 311.0
20 TraesCS2D01G576100 chrUn 80.068 2052 312 65 2143 4145 76214442 76216445 0.000000e+00 1434.0
21 TraesCS2D01G576100 chrUn 80.068 2052 312 65 2143 4145 300461343 300463346 0.000000e+00 1434.0
22 TraesCS2D01G576100 chrUn 86.467 569 73 1 918 1486 76213218 76213782 5.710000e-174 621.0
23 TraesCS2D01G576100 chrUn 86.467 569 73 1 918 1486 300460119 300460683 5.710000e-174 621.0
24 TraesCS2D01G576100 chr6A 79.664 1967 327 46 2201 4145 6975218 6973303 0.000000e+00 1349.0
25 TraesCS2D01G576100 chr6A 81.463 1586 215 47 2201 3749 7006226 7004683 0.000000e+00 1227.0
26 TraesCS2D01G576100 chr6A 74.696 739 158 19 996 1722 7009413 7008692 8.450000e-78 302.0
27 TraesCS2D01G576100 chr6A 73.813 737 155 24 996 1722 6976866 6976158 1.860000e-64 257.0
28 TraesCS2D01G576100 chr6A 77.955 313 64 5 2245 2553 24172838 24172527 1.910000e-44 191.0
29 TraesCS2D01G576100 chr7A 78.359 975 186 17 2208 3171 18980227 18981187 4.450000e-170 608.0
30 TraesCS2D01G576100 chr6B 76.204 1080 215 28 2245 3298 42599234 42598171 2.750000e-147 532.0
31 TraesCS2D01G576100 chr6B 93.262 282 19 0 1 282 207955334 207955615 2.890000e-112 416.0
32 TraesCS2D01G576100 chr7B 77.043 771 153 19 1000 1761 332128885 332129640 6.220000e-114 422.0
33 TraesCS2D01G576100 chr1B 93.262 282 19 0 1 282 99705231 99705512 2.890000e-112 416.0
34 TraesCS2D01G576100 chr3A 92.908 282 20 0 1 282 340797295 340797014 1.350000e-110 411.0
35 TraesCS2D01G576100 chr4B 93.455 275 18 0 8 282 651771761 651771487 4.840000e-110 409.0
36 TraesCS2D01G576100 chr7D 92.580 283 20 1 1 282 513208009 513207727 6.260000e-109 405.0
37 TraesCS2D01G576100 chr7D 76.073 769 164 16 1000 1761 188289074 188289829 2.930000e-102 383.0
38 TraesCS2D01G576100 chr5D 92.553 282 21 0 1 282 555080872 555080591 6.260000e-109 405.0
39 TraesCS2D01G576100 chr3D 92.553 282 21 0 1 282 613441008 613441289 6.260000e-109 405.0
40 TraesCS2D01G576100 chr3D 92.553 282 20 1 2 282 554125731 554126012 2.250000e-108 403.0
41 TraesCS2D01G576100 chr5B 75.661 189 40 6 1537 1722 432980103 432979918 7.160000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G576100 chr2D 639687040 639692231 5191 True 2305.45 7823 100.000000 1 5192 4 chr2D.!!$R1 5191
1 TraesCS2D01G576100 chr2B 798822144 798827037 4893 True 1619.00 5349 92.863250 280 5190 4 chr2B.!!$R1 4910
2 TraesCS2D01G576100 chr2B 798573784 798574475 691 False 275.00 285 92.206500 4716 5192 2 chr2B.!!$F1 476
3 TraesCS2D01G576100 chr2A 765168910 765176028 7118 True 988.35 2966 90.854833 552 5192 6 chr2A.!!$R1 4640
4 TraesCS2D01G576100 chr6D 7281509 7284772 3263 True 2303.00 2303 79.922000 914 4145 1 chr6D.!!$R1 3231
5 TraesCS2D01G576100 chr6D 7290122 7292500 2378 True 400.50 490 80.505500 996 2594 2 chr6D.!!$R2 1598
6 TraesCS2D01G576100 chrUn 76213218 76216445 3227 False 1027.50 1434 83.267500 918 4145 2 chrUn.!!$F1 3227
7 TraesCS2D01G576100 chrUn 300460119 300463346 3227 False 1027.50 1434 83.267500 918 4145 2 chrUn.!!$F2 3227
8 TraesCS2D01G576100 chr6A 6973303 6976866 3563 True 803.00 1349 76.738500 996 4145 2 chr6A.!!$R2 3149
9 TraesCS2D01G576100 chr6A 7004683 7009413 4730 True 764.50 1227 78.079500 996 3749 2 chr6A.!!$R3 2753
10 TraesCS2D01G576100 chr7A 18980227 18981187 960 False 608.00 608 78.359000 2208 3171 1 chr7A.!!$F1 963
11 TraesCS2D01G576100 chr6B 42598171 42599234 1063 True 532.00 532 76.204000 2245 3298 1 chr6B.!!$R1 1053
12 TraesCS2D01G576100 chr7B 332128885 332129640 755 False 422.00 422 77.043000 1000 1761 1 chr7B.!!$F1 761
13 TraesCS2D01G576100 chr7D 188289074 188289829 755 False 383.00 383 76.073000 1000 1761 1 chr7D.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 452 0.032678 ATGAAGCGGCGTGGATCTAG 59.967 55.0 9.37 0.00 0.00 2.43 F
508 509 1.333177 ATCTCGGGCTATGTCTGGTC 58.667 55.0 0.00 0.00 0.00 4.02 F
1581 1588 0.991920 AGGTGGTATCAGTTGTGGGG 59.008 55.0 0.00 0.00 0.00 4.96 F
2381 4593 0.163146 GAAGTTGCTACGGCGTGTTC 59.837 55.0 24.86 11.73 42.25 3.18 F
3528 5808 0.179062 GCAAGTGCGGAGATGAGGAT 60.179 55.0 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1588 3.219281 TGTTTTGCCTAGACCTCCAAAC 58.781 45.455 0.00 0.00 0.00 2.93 R
1676 1686 3.359950 AGAAGATTTGGAATGTCAGGCC 58.640 45.455 0.00 0.00 0.00 5.19 R
3370 5650 0.475906 ATCCCATCAGGCAGCTTACC 59.524 55.000 0.00 0.00 34.51 2.85 R
3802 6085 0.249741 AAACCAAGGTCGACGAGGTG 60.250 55.000 21.06 11.31 32.57 4.00 R
4860 9661 0.037790 TGCCAATAAAAGTTGCCGCC 60.038 50.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.715871 TCCTTCCGTTGACATTGCA 57.284 47.368 0.00 0.00 0.00 4.08
19 20 2.198827 TCCTTCCGTTGACATTGCAT 57.801 45.000 0.00 0.00 0.00 3.96
20 21 2.083774 TCCTTCCGTTGACATTGCATC 58.916 47.619 0.00 0.00 0.00 3.91
21 22 1.202065 CCTTCCGTTGACATTGCATCG 60.202 52.381 0.00 0.00 0.00 3.84
22 23 1.464608 CTTCCGTTGACATTGCATCGT 59.535 47.619 0.00 0.00 31.07 3.73
23 24 1.518325 TCCGTTGACATTGCATCGTT 58.482 45.000 0.00 0.00 31.07 3.85
24 25 1.196581 TCCGTTGACATTGCATCGTTG 59.803 47.619 0.00 0.00 31.07 4.10
25 26 1.069296 CCGTTGACATTGCATCGTTGT 60.069 47.619 0.00 0.00 31.07 3.32
26 27 2.604373 CCGTTGACATTGCATCGTTGTT 60.604 45.455 0.00 0.00 31.07 2.83
27 28 3.042189 CGTTGACATTGCATCGTTGTTT 58.958 40.909 0.00 0.00 0.00 2.83
28 29 3.121729 CGTTGACATTGCATCGTTGTTTG 60.122 43.478 0.00 0.00 0.00 2.93
29 30 3.010624 TGACATTGCATCGTTGTTTGG 57.989 42.857 0.00 0.00 0.00 3.28
30 31 2.620585 TGACATTGCATCGTTGTTTGGA 59.379 40.909 0.00 0.00 0.00 3.53
31 32 3.067320 TGACATTGCATCGTTGTTTGGAA 59.933 39.130 0.00 0.00 0.00 3.53
32 33 4.236935 GACATTGCATCGTTGTTTGGAAT 58.763 39.130 0.00 0.00 34.69 3.01
33 34 4.571375 CATTGCATCGTTGTTTGGAATG 57.429 40.909 3.37 3.37 42.54 2.67
34 35 3.724508 TTGCATCGTTGTTTGGAATGT 57.275 38.095 0.00 0.00 0.00 2.71
35 36 3.010624 TGCATCGTTGTTTGGAATGTG 57.989 42.857 0.00 0.00 0.00 3.21
36 37 2.288091 TGCATCGTTGTTTGGAATGTGG 60.288 45.455 0.00 0.00 0.00 4.17
37 38 2.288152 GCATCGTTGTTTGGAATGTGGT 60.288 45.455 0.00 0.00 0.00 4.16
38 39 3.798548 GCATCGTTGTTTGGAATGTGGTT 60.799 43.478 0.00 0.00 0.00 3.67
39 40 4.557695 GCATCGTTGTTTGGAATGTGGTTA 60.558 41.667 0.00 0.00 0.00 2.85
40 41 5.524284 CATCGTTGTTTGGAATGTGGTTAA 58.476 37.500 0.00 0.00 0.00 2.01
41 42 4.922719 TCGTTGTTTGGAATGTGGTTAAC 58.077 39.130 0.00 0.00 0.00 2.01
42 43 4.641094 TCGTTGTTTGGAATGTGGTTAACT 59.359 37.500 5.42 0.00 0.00 2.24
43 44 5.821470 TCGTTGTTTGGAATGTGGTTAACTA 59.179 36.000 5.42 0.00 0.00 2.24
44 45 6.017770 TCGTTGTTTGGAATGTGGTTAACTAG 60.018 38.462 5.42 0.00 0.00 2.57
45 46 6.443792 GTTGTTTGGAATGTGGTTAACTAGG 58.556 40.000 5.42 0.00 0.00 3.02
46 47 5.074115 TGTTTGGAATGTGGTTAACTAGGG 58.926 41.667 5.42 0.00 0.00 3.53
47 48 5.074804 GTTTGGAATGTGGTTAACTAGGGT 58.925 41.667 5.42 0.00 0.00 4.34
48 49 4.563140 TGGAATGTGGTTAACTAGGGTC 57.437 45.455 5.42 0.00 0.00 4.46
49 50 3.911260 TGGAATGTGGTTAACTAGGGTCA 59.089 43.478 5.42 0.00 0.00 4.02
50 51 4.351407 TGGAATGTGGTTAACTAGGGTCAA 59.649 41.667 5.42 0.00 0.00 3.18
51 52 5.014755 TGGAATGTGGTTAACTAGGGTCAAT 59.985 40.000 5.42 0.00 0.00 2.57
52 53 5.589050 GGAATGTGGTTAACTAGGGTCAATC 59.411 44.000 5.42 0.00 0.00 2.67
53 54 5.772393 ATGTGGTTAACTAGGGTCAATCA 57.228 39.130 5.42 0.00 0.00 2.57
54 55 5.772393 TGTGGTTAACTAGGGTCAATCAT 57.228 39.130 5.42 0.00 0.00 2.45
55 56 6.877668 TGTGGTTAACTAGGGTCAATCATA 57.122 37.500 5.42 0.00 0.00 2.15
56 57 6.646267 TGTGGTTAACTAGGGTCAATCATAC 58.354 40.000 5.42 0.00 0.00 2.39
57 58 6.442564 TGTGGTTAACTAGGGTCAATCATACT 59.557 38.462 5.42 0.00 0.00 2.12
58 59 7.620491 TGTGGTTAACTAGGGTCAATCATACTA 59.380 37.037 5.42 0.00 0.00 1.82
59 60 7.924947 GTGGTTAACTAGGGTCAATCATACTAC 59.075 40.741 5.42 0.00 0.00 2.73
60 61 7.144000 GGTTAACTAGGGTCAATCATACTACG 58.856 42.308 5.42 0.00 0.00 3.51
61 62 5.786264 AACTAGGGTCAATCATACTACGG 57.214 43.478 0.00 0.00 0.00 4.02
62 63 3.573110 ACTAGGGTCAATCATACTACGGC 59.427 47.826 0.00 0.00 0.00 5.68
63 64 1.340248 AGGGTCAATCATACTACGGCG 59.660 52.381 4.80 4.80 0.00 6.46
64 65 1.604693 GGGTCAATCATACTACGGCGG 60.605 57.143 13.24 0.00 0.00 6.13
65 66 1.137513 GTCAATCATACTACGGCGGC 58.862 55.000 13.24 0.00 0.00 6.53
66 67 1.037493 TCAATCATACTACGGCGGCT 58.963 50.000 13.24 0.00 0.00 5.52
67 68 1.000607 TCAATCATACTACGGCGGCTC 60.001 52.381 13.24 0.00 0.00 4.70
68 69 0.039437 AATCATACTACGGCGGCTCG 60.039 55.000 13.24 4.55 0.00 5.03
69 70 1.170919 ATCATACTACGGCGGCTCGT 61.171 55.000 13.24 17.83 45.88 4.18
70 71 0.532640 TCATACTACGGCGGCTCGTA 60.533 55.000 13.24 18.09 43.59 3.43
71 72 0.520404 CATACTACGGCGGCTCGTAT 59.480 55.000 19.00 9.12 43.41 3.06
72 73 1.068748 CATACTACGGCGGCTCGTATT 60.069 52.381 19.00 16.60 43.41 1.89
73 74 1.024271 TACTACGGCGGCTCGTATTT 58.976 50.000 19.00 13.49 43.41 1.40
74 75 0.526954 ACTACGGCGGCTCGTATTTG 60.527 55.000 19.00 12.63 43.41 2.32
75 76 1.213094 CTACGGCGGCTCGTATTTGG 61.213 60.000 19.00 8.20 43.41 3.28
76 77 1.665264 TACGGCGGCTCGTATTTGGA 61.665 55.000 13.24 0.36 43.59 3.53
77 78 1.594293 CGGCGGCTCGTATTTGGAT 60.594 57.895 7.61 0.00 0.00 3.41
78 79 1.157870 CGGCGGCTCGTATTTGGATT 61.158 55.000 7.61 0.00 0.00 3.01
79 80 0.307760 GGCGGCTCGTATTTGGATTG 59.692 55.000 0.00 0.00 0.00 2.67
80 81 0.307760 GCGGCTCGTATTTGGATTGG 59.692 55.000 0.00 0.00 0.00 3.16
81 82 1.948104 CGGCTCGTATTTGGATTGGA 58.052 50.000 0.00 0.00 0.00 3.53
82 83 2.285083 CGGCTCGTATTTGGATTGGAA 58.715 47.619 0.00 0.00 0.00 3.53
83 84 2.878406 CGGCTCGTATTTGGATTGGAAT 59.122 45.455 0.00 0.00 0.00 3.01
84 85 4.062293 CGGCTCGTATTTGGATTGGAATA 58.938 43.478 0.00 0.00 0.00 1.75
85 86 4.695455 CGGCTCGTATTTGGATTGGAATAT 59.305 41.667 0.00 0.00 0.00 1.28
86 87 5.390885 CGGCTCGTATTTGGATTGGAATATG 60.391 44.000 0.00 0.00 0.00 1.78
87 88 5.473504 GGCTCGTATTTGGATTGGAATATGT 59.526 40.000 0.00 0.00 0.00 2.29
88 89 6.373779 GCTCGTATTTGGATTGGAATATGTG 58.626 40.000 0.00 0.00 0.00 3.21
89 90 6.312399 TCGTATTTGGATTGGAATATGTGC 57.688 37.500 0.00 0.00 0.00 4.57
90 91 5.049749 TCGTATTTGGATTGGAATATGTGCG 60.050 40.000 0.00 0.00 0.00 5.34
91 92 3.435105 TTTGGATTGGAATATGTGCGC 57.565 42.857 0.00 0.00 0.00 6.09
92 93 2.346766 TGGATTGGAATATGTGCGCT 57.653 45.000 9.73 0.00 0.00 5.92
93 94 2.221169 TGGATTGGAATATGTGCGCTC 58.779 47.619 9.73 5.51 0.00 5.03
94 95 2.158769 TGGATTGGAATATGTGCGCTCT 60.159 45.455 9.73 0.00 0.00 4.09
95 96 2.880890 GGATTGGAATATGTGCGCTCTT 59.119 45.455 9.73 5.96 0.00 2.85
96 97 3.304257 GGATTGGAATATGTGCGCTCTTG 60.304 47.826 9.73 0.00 0.00 3.02
97 98 2.401583 TGGAATATGTGCGCTCTTGT 57.598 45.000 9.73 0.00 0.00 3.16
98 99 2.009051 TGGAATATGTGCGCTCTTGTG 58.991 47.619 9.73 0.00 0.00 3.33
99 100 1.331756 GGAATATGTGCGCTCTTGTGG 59.668 52.381 9.73 0.00 0.00 4.17
100 101 1.331756 GAATATGTGCGCTCTTGTGGG 59.668 52.381 9.73 0.00 0.00 4.61
101 102 1.097547 ATATGTGCGCTCTTGTGGGC 61.098 55.000 9.73 5.06 44.63 5.36
102 103 2.184020 TATGTGCGCTCTTGTGGGCT 62.184 55.000 9.73 0.00 44.66 5.19
103 104 2.047274 GTGCGCTCTTGTGGGCTA 60.047 61.111 9.73 0.00 44.66 3.93
104 105 1.450312 GTGCGCTCTTGTGGGCTAT 60.450 57.895 9.73 0.00 44.66 2.97
105 106 0.179084 GTGCGCTCTTGTGGGCTATA 60.179 55.000 9.73 0.00 44.66 1.31
106 107 0.758734 TGCGCTCTTGTGGGCTATAT 59.241 50.000 9.73 0.00 44.66 0.86
107 108 1.151668 GCGCTCTTGTGGGCTATATG 58.848 55.000 0.00 0.00 41.74 1.78
108 109 1.800805 CGCTCTTGTGGGCTATATGG 58.199 55.000 0.00 0.00 0.00 2.74
109 110 1.344438 CGCTCTTGTGGGCTATATGGA 59.656 52.381 0.00 0.00 0.00 3.41
110 111 2.224281 CGCTCTTGTGGGCTATATGGAA 60.224 50.000 0.00 0.00 0.00 3.53
111 112 3.557898 CGCTCTTGTGGGCTATATGGAAT 60.558 47.826 0.00 0.00 0.00 3.01
112 113 4.401925 GCTCTTGTGGGCTATATGGAATT 58.598 43.478 0.00 0.00 0.00 2.17
113 114 4.217118 GCTCTTGTGGGCTATATGGAATTG 59.783 45.833 0.00 0.00 0.00 2.32
114 115 4.144297 TCTTGTGGGCTATATGGAATTGC 58.856 43.478 0.00 0.00 0.00 3.56
115 116 3.591695 TGTGGGCTATATGGAATTGCA 57.408 42.857 0.79 0.79 0.00 4.08
116 117 3.489355 TGTGGGCTATATGGAATTGCAG 58.511 45.455 5.69 0.00 0.00 4.41
117 118 2.821969 GTGGGCTATATGGAATTGCAGG 59.178 50.000 5.69 0.00 0.00 4.85
118 119 2.715880 TGGGCTATATGGAATTGCAGGA 59.284 45.455 5.69 0.00 0.00 3.86
119 120 3.139957 TGGGCTATATGGAATTGCAGGAA 59.860 43.478 5.69 0.00 0.00 3.36
120 121 4.202706 TGGGCTATATGGAATTGCAGGAAT 60.203 41.667 5.69 2.01 0.00 3.01
121 122 4.159135 GGGCTATATGGAATTGCAGGAATG 59.841 45.833 5.69 0.00 0.00 2.67
122 123 5.012239 GGCTATATGGAATTGCAGGAATGA 58.988 41.667 5.69 0.00 0.00 2.57
123 124 5.655532 GGCTATATGGAATTGCAGGAATGAT 59.344 40.000 5.69 0.00 0.00 2.45
124 125 6.154021 GGCTATATGGAATTGCAGGAATGATT 59.846 38.462 5.69 0.00 0.00 2.57
125 126 7.310237 GGCTATATGGAATTGCAGGAATGATTT 60.310 37.037 5.69 0.00 0.00 2.17
126 127 7.544566 GCTATATGGAATTGCAGGAATGATTTG 59.455 37.037 5.69 0.00 0.00 2.32
127 128 5.943349 ATGGAATTGCAGGAATGATTTGA 57.057 34.783 5.69 0.00 0.00 2.69
128 129 5.943349 TGGAATTGCAGGAATGATTTGAT 57.057 34.783 0.00 0.00 0.00 2.57
129 130 7.606135 ATGGAATTGCAGGAATGATTTGATA 57.394 32.000 5.69 0.00 0.00 2.15
130 131 7.606135 TGGAATTGCAGGAATGATTTGATAT 57.394 32.000 0.00 0.00 0.00 1.63
131 132 8.025270 TGGAATTGCAGGAATGATTTGATATT 57.975 30.769 0.00 0.00 0.00 1.28
132 133 8.487848 TGGAATTGCAGGAATGATTTGATATTT 58.512 29.630 0.00 0.00 0.00 1.40
133 134 9.985730 GGAATTGCAGGAATGATTTGATATTTA 57.014 29.630 0.00 0.00 0.00 1.40
160 161 7.755582 AGTCAACACAATTTAACTTTCTTGC 57.244 32.000 0.00 0.00 0.00 4.01
161 162 7.319646 AGTCAACACAATTTAACTTTCTTGCA 58.680 30.769 0.00 0.00 0.00 4.08
162 163 7.489113 AGTCAACACAATTTAACTTTCTTGCAG 59.511 33.333 0.00 0.00 0.00 4.41
163 164 6.756074 TCAACACAATTTAACTTTCTTGCAGG 59.244 34.615 0.00 0.00 0.00 4.85
164 165 6.220726 ACACAATTTAACTTTCTTGCAGGT 57.779 33.333 0.00 0.00 0.00 4.00
165 166 6.273071 ACACAATTTAACTTTCTTGCAGGTC 58.727 36.000 0.00 0.00 0.00 3.85
166 167 6.127479 ACACAATTTAACTTTCTTGCAGGTCA 60.127 34.615 0.00 0.00 0.00 4.02
167 168 6.925165 CACAATTTAACTTTCTTGCAGGTCAT 59.075 34.615 0.00 0.00 0.00 3.06
168 169 7.115378 CACAATTTAACTTTCTTGCAGGTCATC 59.885 37.037 0.00 0.00 0.00 2.92
169 170 7.014615 ACAATTTAACTTTCTTGCAGGTCATCT 59.985 33.333 0.00 0.00 0.00 2.90
170 171 6.959639 TTTAACTTTCTTGCAGGTCATCTT 57.040 33.333 0.00 0.00 0.00 2.40
171 172 6.560253 TTAACTTTCTTGCAGGTCATCTTC 57.440 37.500 0.00 0.00 0.00 2.87
172 173 4.090761 ACTTTCTTGCAGGTCATCTTCA 57.909 40.909 0.00 0.00 0.00 3.02
173 174 4.070716 ACTTTCTTGCAGGTCATCTTCAG 58.929 43.478 0.00 0.00 0.00 3.02
174 175 4.202398 ACTTTCTTGCAGGTCATCTTCAGA 60.202 41.667 0.00 0.00 0.00 3.27
175 176 3.606595 TCTTGCAGGTCATCTTCAGAG 57.393 47.619 0.00 0.00 0.00 3.35
176 177 2.008329 CTTGCAGGTCATCTTCAGAGC 58.992 52.381 0.00 0.00 0.00 4.09
177 178 1.273759 TGCAGGTCATCTTCAGAGCT 58.726 50.000 0.00 0.00 44.00 4.09
178 179 2.460669 TGCAGGTCATCTTCAGAGCTA 58.539 47.619 0.00 0.00 41.51 3.32
179 180 2.167281 TGCAGGTCATCTTCAGAGCTAC 59.833 50.000 0.00 0.00 41.51 3.58
180 181 2.482839 GCAGGTCATCTTCAGAGCTACC 60.483 54.545 0.00 0.00 41.51 3.18
181 182 2.028130 AGGTCATCTTCAGAGCTACCG 58.972 52.381 0.00 0.00 41.62 4.02
182 183 1.537135 GGTCATCTTCAGAGCTACCGC 60.537 57.143 0.00 0.00 0.00 5.68
191 192 2.815308 AGCTACCGCTTGGATCCG 59.185 61.111 7.39 0.00 46.47 4.18
192 193 2.058595 AGCTACCGCTTGGATCCGT 61.059 57.895 7.39 0.49 46.47 4.69
193 194 0.754217 AGCTACCGCTTGGATCCGTA 60.754 55.000 7.39 1.78 46.47 4.02
194 195 0.317479 GCTACCGCTTGGATCCGTAT 59.683 55.000 7.39 0.00 36.26 3.06
195 196 1.935300 GCTACCGCTTGGATCCGTATG 60.935 57.143 7.39 0.00 36.26 2.39
196 197 1.340248 CTACCGCTTGGATCCGTATGT 59.660 52.381 7.39 3.24 36.26 2.29
197 198 0.179084 ACCGCTTGGATCCGTATGTG 60.179 55.000 7.39 3.69 36.26 3.21
198 199 0.880278 CCGCTTGGATCCGTATGTGG 60.880 60.000 7.39 9.02 33.02 4.17
199 200 0.179084 CGCTTGGATCCGTATGTGGT 60.179 55.000 7.39 0.00 0.00 4.16
200 201 1.583054 GCTTGGATCCGTATGTGGTC 58.417 55.000 7.39 0.00 0.00 4.02
201 202 1.810412 GCTTGGATCCGTATGTGGTCC 60.810 57.143 7.39 0.00 32.83 4.46
202 203 1.762957 CTTGGATCCGTATGTGGTCCT 59.237 52.381 7.39 0.00 33.17 3.85
203 204 1.874129 TGGATCCGTATGTGGTCCTT 58.126 50.000 7.39 0.00 33.17 3.36
204 205 3.035055 TGGATCCGTATGTGGTCCTTA 57.965 47.619 7.39 0.00 33.17 2.69
205 206 2.696707 TGGATCCGTATGTGGTCCTTAC 59.303 50.000 7.39 0.00 33.17 2.34
206 207 2.963782 GGATCCGTATGTGGTCCTTACT 59.036 50.000 0.00 0.00 0.00 2.24
207 208 3.005578 GGATCCGTATGTGGTCCTTACTC 59.994 52.174 0.00 0.00 0.00 2.59
208 209 3.090210 TCCGTATGTGGTCCTTACTCA 57.910 47.619 0.00 0.00 0.00 3.41
209 210 2.756760 TCCGTATGTGGTCCTTACTCAC 59.243 50.000 0.00 0.00 0.00 3.51
210 211 2.758979 CCGTATGTGGTCCTTACTCACT 59.241 50.000 0.00 0.00 31.73 3.41
211 212 3.181489 CCGTATGTGGTCCTTACTCACTC 60.181 52.174 0.00 0.00 31.73 3.51
212 213 3.181489 CGTATGTGGTCCTTACTCACTCC 60.181 52.174 0.00 0.00 31.73 3.85
213 214 2.696526 TGTGGTCCTTACTCACTCCT 57.303 50.000 0.00 0.00 31.73 3.69
214 215 3.820195 TGTGGTCCTTACTCACTCCTA 57.180 47.619 0.00 0.00 31.73 2.94
215 216 4.332683 TGTGGTCCTTACTCACTCCTAT 57.667 45.455 0.00 0.00 31.73 2.57
216 217 4.023980 TGTGGTCCTTACTCACTCCTATG 58.976 47.826 0.00 0.00 31.73 2.23
217 218 4.264217 TGTGGTCCTTACTCACTCCTATGA 60.264 45.833 0.00 0.00 31.73 2.15
218 219 4.710375 GTGGTCCTTACTCACTCCTATGAA 59.290 45.833 0.00 0.00 0.00 2.57
219 220 5.187186 GTGGTCCTTACTCACTCCTATGAAA 59.813 44.000 0.00 0.00 0.00 2.69
220 221 5.964477 TGGTCCTTACTCACTCCTATGAAAT 59.036 40.000 0.00 0.00 0.00 2.17
221 222 6.098409 TGGTCCTTACTCACTCCTATGAAATC 59.902 42.308 0.00 0.00 0.00 2.17
222 223 6.463190 GGTCCTTACTCACTCCTATGAAATCC 60.463 46.154 0.00 0.00 0.00 3.01
223 224 6.098409 GTCCTTACTCACTCCTATGAAATCCA 59.902 42.308 0.00 0.00 0.00 3.41
224 225 6.325028 TCCTTACTCACTCCTATGAAATCCAG 59.675 42.308 0.00 0.00 0.00 3.86
225 226 6.463614 CCTTACTCACTCCTATGAAATCCAGG 60.464 46.154 0.00 0.00 0.00 4.45
226 227 3.713764 ACTCACTCCTATGAAATCCAGGG 59.286 47.826 0.00 0.00 0.00 4.45
227 228 3.969976 CTCACTCCTATGAAATCCAGGGA 59.030 47.826 0.00 0.00 32.37 4.20
228 229 3.969976 TCACTCCTATGAAATCCAGGGAG 59.030 47.826 0.00 0.00 45.76 4.30
229 230 2.708325 ACTCCTATGAAATCCAGGGAGC 59.292 50.000 0.00 0.00 44.97 4.70
230 231 2.039613 CTCCTATGAAATCCAGGGAGCC 59.960 54.545 0.00 0.00 39.80 4.70
231 232 2.061061 CCTATGAAATCCAGGGAGCCT 58.939 52.381 0.00 0.00 0.00 4.58
232 233 2.444766 CCTATGAAATCCAGGGAGCCTT 59.555 50.000 0.00 0.00 0.00 4.35
233 234 3.117360 CCTATGAAATCCAGGGAGCCTTT 60.117 47.826 0.00 0.00 0.00 3.11
234 235 4.104738 CCTATGAAATCCAGGGAGCCTTTA 59.895 45.833 0.00 0.00 0.00 1.85
235 236 3.652057 TGAAATCCAGGGAGCCTTTAG 57.348 47.619 0.00 0.00 0.00 1.85
236 237 2.919602 TGAAATCCAGGGAGCCTTTAGT 59.080 45.455 0.00 0.00 0.00 2.24
237 238 3.333680 TGAAATCCAGGGAGCCTTTAGTT 59.666 43.478 0.00 0.00 0.00 2.24
238 239 4.538490 TGAAATCCAGGGAGCCTTTAGTTA 59.462 41.667 0.00 0.00 0.00 2.24
239 240 4.505324 AATCCAGGGAGCCTTTAGTTAC 57.495 45.455 0.00 0.00 0.00 2.50
240 241 3.200958 TCCAGGGAGCCTTTAGTTACT 57.799 47.619 0.00 0.00 0.00 2.24
241 242 4.341863 TCCAGGGAGCCTTTAGTTACTA 57.658 45.455 0.00 0.00 0.00 1.82
242 243 4.287552 TCCAGGGAGCCTTTAGTTACTAG 58.712 47.826 0.00 0.00 0.00 2.57
243 244 3.388350 CCAGGGAGCCTTTAGTTACTAGG 59.612 52.174 0.00 0.00 0.00 3.02
244 245 4.031611 CAGGGAGCCTTTAGTTACTAGGT 58.968 47.826 3.45 0.00 0.00 3.08
245 246 4.031611 AGGGAGCCTTTAGTTACTAGGTG 58.968 47.826 3.45 0.00 0.00 4.00
246 247 3.431905 GGGAGCCTTTAGTTACTAGGTGC 60.432 52.174 3.45 2.87 0.00 5.01
247 248 3.197116 GGAGCCTTTAGTTACTAGGTGCA 59.803 47.826 3.45 0.00 0.00 4.57
248 249 4.323257 GGAGCCTTTAGTTACTAGGTGCAA 60.323 45.833 3.45 0.00 0.00 4.08
249 250 4.576879 AGCCTTTAGTTACTAGGTGCAAC 58.423 43.478 0.00 0.00 0.00 4.17
267 268 1.496060 ACCAATAGGAGATGGTCGCA 58.504 50.000 0.00 0.00 46.94 5.10
268 269 1.139058 ACCAATAGGAGATGGTCGCAC 59.861 52.381 0.00 0.00 46.94 5.34
269 270 1.491670 CAATAGGAGATGGTCGCACG 58.508 55.000 0.00 0.00 0.00 5.34
270 271 0.389391 AATAGGAGATGGTCGCACGG 59.611 55.000 0.00 0.00 0.00 4.94
271 272 1.464376 ATAGGAGATGGTCGCACGGG 61.464 60.000 0.00 0.00 0.00 5.28
273 274 4.148825 GAGATGGTCGCACGGGCT 62.149 66.667 8.62 0.00 38.10 5.19
274 275 2.758327 AGATGGTCGCACGGGCTA 60.758 61.111 8.62 0.00 38.10 3.93
275 276 2.088674 GAGATGGTCGCACGGGCTAT 62.089 60.000 8.62 0.00 38.10 2.97
276 277 0.826256 AGATGGTCGCACGGGCTATA 60.826 55.000 8.62 0.00 38.10 1.31
277 278 0.246635 GATGGTCGCACGGGCTATAT 59.753 55.000 8.62 0.00 38.10 0.86
278 279 0.685097 ATGGTCGCACGGGCTATATT 59.315 50.000 8.62 0.00 38.10 1.28
321 322 2.352821 TGGCTTGCACATGGGATGC 61.353 57.895 0.00 0.00 43.68 3.91
344 345 0.035439 TGGGACCGAGCAAAGATTCC 60.035 55.000 0.00 0.00 0.00 3.01
346 347 1.340114 GGGACCGAGCAAAGATTCCTT 60.340 52.381 0.00 0.00 0.00 3.36
354 355 2.071540 GCAAAGATTCCTTGCTTTGGC 58.928 47.619 11.86 5.97 46.76 4.52
367 368 1.228398 TTTGGCAGGCGTGGATCAA 60.228 52.632 8.72 0.00 0.00 2.57
369 370 2.123248 TTGGCAGGCGTGGATCAAGA 62.123 55.000 8.72 0.00 0.00 3.02
417 418 4.712122 AACAAAGGTAAACCCATATGCG 57.288 40.909 0.00 0.00 36.42 4.73
436 437 0.035820 GGCACCCTCGGTAACATGAA 60.036 55.000 0.00 0.00 32.11 2.57
438 439 1.369625 CACCCTCGGTAACATGAAGC 58.630 55.000 0.00 0.00 32.11 3.86
451 452 0.032678 ATGAAGCGGCGTGGATCTAG 59.967 55.000 9.37 0.00 0.00 2.43
458 459 1.686325 GGCGTGGATCTAGAGGCCAA 61.686 60.000 16.32 1.90 41.76 4.52
508 509 1.333177 ATCTCGGGCTATGTCTGGTC 58.667 55.000 0.00 0.00 0.00 4.02
525 526 3.918220 CGATGTCGGCTTCAGCGC 61.918 66.667 0.00 0.00 43.26 5.92
564 565 3.450457 TCTCTTCTTCTGGATCTCAAGGC 59.550 47.826 0.00 0.00 0.00 4.35
591 592 1.648720 GTGCGTTTGCTCAAGCTGA 59.351 52.632 3.32 0.00 43.34 4.26
639 640 2.620112 GCGACATGCTGCAAGTGGT 61.620 57.895 15.87 7.25 41.73 4.16
694 695 2.715737 GCGAAGGCTTCTCGATCTAT 57.284 50.000 23.74 0.00 35.83 1.98
736 737 3.136077 AGCTCATGGTAATCTCACTGCAT 59.864 43.478 0.00 0.00 0.00 3.96
797 798 2.828877 TGGGTGAACAGTCAAAGTACG 58.171 47.619 0.00 0.00 34.87 3.67
860 861 7.191918 TCCTTCATTCCAGCATCCTATCTATA 58.808 38.462 0.00 0.00 0.00 1.31
899 900 8.980481 ACCTATATAATGCCCATATAAACAGC 57.020 34.615 0.00 0.00 0.00 4.40
901 902 9.060347 CCTATATAATGCCCATATAAACAGCTG 57.940 37.037 13.48 13.48 0.00 4.24
906 907 5.366482 TGCCCATATAAACAGCTGTCTAA 57.634 39.130 21.95 9.06 0.00 2.10
977 978 5.379706 AGCATAGGTAGAAGCCAAGATTT 57.620 39.130 0.00 0.00 0.00 2.17
978 979 5.760131 AGCATAGGTAGAAGCCAAGATTTT 58.240 37.500 0.00 0.00 0.00 1.82
1581 1588 0.991920 AGGTGGTATCAGTTGTGGGG 59.008 55.000 0.00 0.00 0.00 4.96
1676 1686 3.635331 CATTTGTGCCAGTGTCTCAAAG 58.365 45.455 7.38 0.00 32.68 2.77
1885 3154 3.535561 ACATGCCTAATTTGGTCTCGAG 58.464 45.455 5.93 5.93 0.00 4.04
1967 3381 6.253512 GCTAACAAACAGTGGAAGTTTTGAAG 59.746 38.462 9.43 7.56 37.10 3.02
2032 3602 6.870439 AGAAAATCAGTTTAGCTTTGAATGGC 59.130 34.615 0.00 0.00 0.00 4.40
2381 4593 0.163146 GAAGTTGCTACGGCGTGTTC 59.837 55.000 24.86 11.73 42.25 3.18
2599 4829 1.978580 GTCCCAAAGAAGAGGAGTGGA 59.021 52.381 0.00 0.00 0.00 4.02
2655 4885 4.338118 GGAACAAAACTCACACTGAATGGA 59.662 41.667 0.00 0.00 0.00 3.41
2713 4943 3.118482 TCCATCTCATCTGAAGACTTGCC 60.118 47.826 0.00 0.00 0.00 4.52
3128 5370 4.982241 TCTTTGGAGACTCTGGTGAAAT 57.018 40.909 1.74 0.00 0.00 2.17
3129 5374 4.645535 TCTTTGGAGACTCTGGTGAAATG 58.354 43.478 1.74 0.00 0.00 2.32
3206 5453 3.074390 ACAATGGACCTCACTGGAATGAA 59.926 43.478 0.00 0.00 39.71 2.57
3356 5636 0.320683 CCACACTTGTCGCATCTGGA 60.321 55.000 0.00 0.00 0.00 3.86
3370 5650 6.257411 GTCGCATCTGGATATTGGATATCAAG 59.743 42.308 4.83 7.79 42.32 3.02
3513 5793 4.280677 AGAAATCTATCTCTCTCCGGCAAG 59.719 45.833 0.00 0.00 0.00 4.01
3515 5795 2.302260 TCTATCTCTCTCCGGCAAGTG 58.698 52.381 0.00 0.00 0.00 3.16
3518 5798 3.997064 CTCTCTCCGGCAAGTGCGG 62.997 68.421 0.00 4.00 43.26 5.69
3523 5803 3.197790 CCGGCAAGTGCGGAGATG 61.198 66.667 11.98 0.00 43.02 2.90
3528 5808 0.179062 GCAAGTGCGGAGATGAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
3581 5861 7.598278 TGCACTTCTTTGAGAAAACTTTGTAA 58.402 30.769 0.00 0.00 33.19 2.41
3635 5915 2.885135 TGCATGGATGGTTTGTCTCT 57.115 45.000 0.00 0.00 0.00 3.10
3636 5916 3.159213 TGCATGGATGGTTTGTCTCTT 57.841 42.857 0.00 0.00 0.00 2.85
3637 5917 2.821378 TGCATGGATGGTTTGTCTCTTG 59.179 45.455 0.00 0.00 0.00 3.02
3671 5954 2.894387 GCGACTCCATGGCAGAGC 60.894 66.667 6.96 12.30 34.56 4.09
3721 6004 1.516423 GTCCCTAACTGGACGAGGC 59.484 63.158 0.00 0.00 44.98 4.70
3818 6101 2.261671 CCACCTCGTCGACCTTGG 59.738 66.667 10.58 11.86 0.00 3.61
3825 6108 2.056577 CTCGTCGACCTTGGTTTACAC 58.943 52.381 10.58 0.00 0.00 2.90
3978 6261 4.082026 CAGAGGCTGGGGTTAATTTTCAAG 60.082 45.833 0.00 0.00 0.00 3.02
4013 6296 3.379445 GAACGGAGCCGGACCAGA 61.379 66.667 5.05 0.00 44.69 3.86
4052 6335 0.394565 GCACTGGAAGAGGTGTCTGT 59.605 55.000 0.00 0.00 37.43 3.41
4066 6349 0.179161 GTCTGTGCGTATCTCGTGCT 60.179 55.000 0.00 0.00 42.13 4.40
4069 6352 0.242555 TGTGCGTATCTCGTGCTTCA 59.757 50.000 0.00 0.00 42.13 3.02
4108 6391 3.129502 GCTGCGCTGAATCTGCCA 61.130 61.111 19.32 5.12 0.00 4.92
4145 6428 1.227973 GGCATCCCGACAATCCTCC 60.228 63.158 0.00 0.00 0.00 4.30
4146 6429 1.595382 GCATCCCGACAATCCTCCG 60.595 63.158 0.00 0.00 0.00 4.63
4163 6446 3.441572 CCTCCGACTCTAGTCCGTTTTTA 59.558 47.826 4.58 0.00 41.86 1.52
4164 6447 4.410448 CTCCGACTCTAGTCCGTTTTTAC 58.590 47.826 4.58 0.00 41.86 2.01
4165 6448 3.191371 TCCGACTCTAGTCCGTTTTTACC 59.809 47.826 4.58 0.00 41.86 2.85
4169 6452 4.879598 ACTCTAGTCCGTTTTTACCAGTG 58.120 43.478 0.00 0.00 0.00 3.66
4211 6494 3.876274 ATTTCTGCTTCGACTCTGCTA 57.124 42.857 0.00 0.00 0.00 3.49
4531 6817 5.008712 CGTAGAGTTCCTGTAGCATGATACA 59.991 44.000 21.69 21.69 34.55 2.29
4532 6818 6.294231 CGTAGAGTTCCTGTAGCATGATACAT 60.294 42.308 23.08 8.98 35.21 2.29
4612 9324 7.699391 CCTGCAGTGTCATTAGTGAATATTTTG 59.301 37.037 13.81 0.00 35.80 2.44
4613 9325 7.028962 TGCAGTGTCATTAGTGAATATTTTGC 58.971 34.615 0.00 0.00 35.80 3.68
4617 9329 6.021468 GTGTCATTAGTGAATATTTTGCGCAC 60.021 38.462 11.12 0.00 35.80 5.34
4633 9345 1.009829 GCACTAGCCTGATTTCCACG 58.990 55.000 0.00 0.00 33.58 4.94
4634 9346 1.656652 CACTAGCCTGATTTCCACGG 58.343 55.000 0.00 0.00 0.00 4.94
4644 9356 5.220796 GCCTGATTTCCACGGAACTAAATAC 60.221 44.000 0.00 0.00 33.41 1.89
4675 9387 3.055819 GCTCTAGTTCACATTCCTGGTCA 60.056 47.826 0.00 0.00 0.00 4.02
4687 9399 7.708752 TCACATTCCTGGTCAAATTTTTAACAC 59.291 33.333 0.00 0.00 0.00 3.32
4713 9425 8.352201 CAAGATGTTGTCTGGTTTTCTAATTCA 58.648 33.333 0.00 0.00 37.23 2.57
4791 9592 2.555325 GCATGGTGTGATGATGTATGGG 59.445 50.000 0.00 0.00 0.00 4.00
4848 9649 5.245531 TGGTTCTGTGATCTTTGTGGTATC 58.754 41.667 0.00 0.00 0.00 2.24
4877 9678 2.447244 TTGGCGGCAACTTTTATTGG 57.553 45.000 21.79 0.00 0.00 3.16
4913 9714 4.219944 AGAAATGAACTAGCACGAGTGGTA 59.780 41.667 13.51 13.51 41.96 3.25
4914 9715 4.737855 AATGAACTAGCACGAGTGGTAT 57.262 40.909 14.39 2.43 41.91 2.73
4921 9722 3.170791 AGCACGAGTGGTATTGATGAG 57.829 47.619 6.11 0.00 39.83 2.90
4998 9803 4.503910 TGTAGGAAATGAAGTGGATGTCG 58.496 43.478 0.00 0.00 0.00 4.35
5021 10129 5.629125 GATTCCTATTGATTTCCAGCCTCT 58.371 41.667 0.00 0.00 0.00 3.69
5055 10164 7.244166 TGTTCATTTATTTTTGGTGTGCTTG 57.756 32.000 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.083774 GATGCAATGTCAACGGAAGGA 58.916 47.619 0.00 0.00 0.00 3.36
1 2 1.202065 CGATGCAATGTCAACGGAAGG 60.202 52.381 0.00 0.00 0.00 3.46
2 3 1.464608 ACGATGCAATGTCAACGGAAG 59.535 47.619 10.57 0.00 36.71 3.46
3 4 1.518325 ACGATGCAATGTCAACGGAA 58.482 45.000 10.57 0.00 36.71 4.30
4 5 1.196581 CAACGATGCAATGTCAACGGA 59.803 47.619 10.57 0.00 36.71 4.69
5 6 1.069296 ACAACGATGCAATGTCAACGG 60.069 47.619 10.57 0.00 36.71 4.44
6 7 2.314561 ACAACGATGCAATGTCAACG 57.685 45.000 0.00 6.00 38.07 4.10
7 8 3.182173 CCAAACAACGATGCAATGTCAAC 59.818 43.478 0.00 0.00 0.00 3.18
8 9 3.067320 TCCAAACAACGATGCAATGTCAA 59.933 39.130 0.00 0.00 0.00 3.18
9 10 2.620585 TCCAAACAACGATGCAATGTCA 59.379 40.909 0.00 0.00 0.00 3.58
10 11 3.281341 TCCAAACAACGATGCAATGTC 57.719 42.857 0.00 0.00 0.00 3.06
11 12 3.724508 TTCCAAACAACGATGCAATGT 57.275 38.095 0.00 0.00 0.00 2.71
12 13 3.989167 ACATTCCAAACAACGATGCAATG 59.011 39.130 0.00 0.00 0.00 2.82
13 14 3.989167 CACATTCCAAACAACGATGCAAT 59.011 39.130 0.00 0.00 0.00 3.56
14 15 3.379240 CACATTCCAAACAACGATGCAA 58.621 40.909 0.00 0.00 0.00 4.08
15 16 2.288091 CCACATTCCAAACAACGATGCA 60.288 45.455 0.00 0.00 0.00 3.96
16 17 2.288152 ACCACATTCCAAACAACGATGC 60.288 45.455 0.00 0.00 0.00 3.91
17 18 3.641437 ACCACATTCCAAACAACGATG 57.359 42.857 0.00 0.00 0.00 3.84
18 19 5.300792 AGTTAACCACATTCCAAACAACGAT 59.699 36.000 0.88 0.00 0.00 3.73
19 20 4.641094 AGTTAACCACATTCCAAACAACGA 59.359 37.500 0.88 0.00 0.00 3.85
20 21 4.927422 AGTTAACCACATTCCAAACAACG 58.073 39.130 0.88 0.00 0.00 4.10
21 22 6.443792 CCTAGTTAACCACATTCCAAACAAC 58.556 40.000 0.88 0.00 0.00 3.32
22 23 5.536916 CCCTAGTTAACCACATTCCAAACAA 59.463 40.000 0.88 0.00 0.00 2.83
23 24 5.074115 CCCTAGTTAACCACATTCCAAACA 58.926 41.667 0.88 0.00 0.00 2.83
24 25 5.074804 ACCCTAGTTAACCACATTCCAAAC 58.925 41.667 0.88 0.00 0.00 2.93
25 26 5.163077 TGACCCTAGTTAACCACATTCCAAA 60.163 40.000 0.88 0.00 0.00 3.28
26 27 4.351407 TGACCCTAGTTAACCACATTCCAA 59.649 41.667 0.88 0.00 0.00 3.53
27 28 3.911260 TGACCCTAGTTAACCACATTCCA 59.089 43.478 0.88 0.00 0.00 3.53
28 29 4.563140 TGACCCTAGTTAACCACATTCC 57.437 45.455 0.88 0.00 0.00 3.01
29 30 6.177610 TGATTGACCCTAGTTAACCACATTC 58.822 40.000 0.88 0.00 0.00 2.67
30 31 6.134535 TGATTGACCCTAGTTAACCACATT 57.865 37.500 0.88 0.00 0.00 2.71
31 32 5.772393 TGATTGACCCTAGTTAACCACAT 57.228 39.130 0.88 0.00 0.00 3.21
32 33 5.772393 ATGATTGACCCTAGTTAACCACA 57.228 39.130 0.88 0.00 0.00 4.17
33 34 6.885922 AGTATGATTGACCCTAGTTAACCAC 58.114 40.000 0.88 0.00 0.00 4.16
34 35 7.201848 CGTAGTATGATTGACCCTAGTTAACCA 60.202 40.741 0.88 0.00 0.00 3.67
35 36 7.144000 CGTAGTATGATTGACCCTAGTTAACC 58.856 42.308 0.88 0.00 0.00 2.85
36 37 7.144000 CCGTAGTATGATTGACCCTAGTTAAC 58.856 42.308 0.00 0.00 0.00 2.01
37 38 6.239120 GCCGTAGTATGATTGACCCTAGTTAA 60.239 42.308 0.00 0.00 0.00 2.01
38 39 5.242393 GCCGTAGTATGATTGACCCTAGTTA 59.758 44.000 0.00 0.00 0.00 2.24
39 40 4.038883 GCCGTAGTATGATTGACCCTAGTT 59.961 45.833 0.00 0.00 0.00 2.24
40 41 3.573110 GCCGTAGTATGATTGACCCTAGT 59.427 47.826 0.00 0.00 0.00 2.57
41 42 3.366070 CGCCGTAGTATGATTGACCCTAG 60.366 52.174 0.00 0.00 0.00 3.02
42 43 2.555325 CGCCGTAGTATGATTGACCCTA 59.445 50.000 0.00 0.00 0.00 3.53
43 44 1.340248 CGCCGTAGTATGATTGACCCT 59.660 52.381 0.00 0.00 0.00 4.34
44 45 1.604693 CCGCCGTAGTATGATTGACCC 60.605 57.143 0.00 0.00 0.00 4.46
45 46 1.779569 CCGCCGTAGTATGATTGACC 58.220 55.000 0.00 0.00 0.00 4.02
46 47 1.137513 GCCGCCGTAGTATGATTGAC 58.862 55.000 0.00 0.00 0.00 3.18
47 48 1.000607 GAGCCGCCGTAGTATGATTGA 60.001 52.381 0.00 0.00 0.00 2.57
48 49 1.419374 GAGCCGCCGTAGTATGATTG 58.581 55.000 0.00 0.00 0.00 2.67
49 50 0.039437 CGAGCCGCCGTAGTATGATT 60.039 55.000 0.00 0.00 0.00 2.57
50 51 1.170919 ACGAGCCGCCGTAGTATGAT 61.171 55.000 5.27 0.00 41.44 2.45
51 52 0.532640 TACGAGCCGCCGTAGTATGA 60.533 55.000 9.24 0.00 43.20 2.15
52 53 0.520404 ATACGAGCCGCCGTAGTATG 59.480 55.000 15.88 0.00 46.36 2.39
53 54 1.242076 AATACGAGCCGCCGTAGTAT 58.758 50.000 15.88 6.19 46.36 2.12
54 55 1.024271 AAATACGAGCCGCCGTAGTA 58.976 50.000 15.88 4.46 46.36 1.82
55 56 0.526954 CAAATACGAGCCGCCGTAGT 60.527 55.000 15.88 12.15 46.36 2.73
56 57 1.213094 CCAAATACGAGCCGCCGTAG 61.213 60.000 15.88 6.34 46.36 3.51
58 59 2.306255 ATCCAAATACGAGCCGCCGT 62.306 55.000 10.92 10.92 45.54 5.68
59 60 1.157870 AATCCAAATACGAGCCGCCG 61.158 55.000 0.00 0.44 0.00 6.46
60 61 0.307760 CAATCCAAATACGAGCCGCC 59.692 55.000 0.00 0.00 0.00 6.13
61 62 0.307760 CCAATCCAAATACGAGCCGC 59.692 55.000 0.00 0.00 0.00 6.53
62 63 1.948104 TCCAATCCAAATACGAGCCG 58.052 50.000 0.00 0.00 0.00 5.52
63 64 5.473504 ACATATTCCAATCCAAATACGAGCC 59.526 40.000 0.00 0.00 0.00 4.70
64 65 6.373779 CACATATTCCAATCCAAATACGAGC 58.626 40.000 0.00 0.00 0.00 5.03
65 66 6.373779 GCACATATTCCAATCCAAATACGAG 58.626 40.000 0.00 0.00 0.00 4.18
66 67 5.049749 CGCACATATTCCAATCCAAATACGA 60.050 40.000 0.00 0.00 0.00 3.43
67 68 5.146460 CGCACATATTCCAATCCAAATACG 58.854 41.667 0.00 0.00 0.00 3.06
68 69 4.917415 GCGCACATATTCCAATCCAAATAC 59.083 41.667 0.30 0.00 0.00 1.89
69 70 4.826733 AGCGCACATATTCCAATCCAAATA 59.173 37.500 11.47 0.00 0.00 1.40
70 71 3.638160 AGCGCACATATTCCAATCCAAAT 59.362 39.130 11.47 0.00 0.00 2.32
71 72 3.023119 AGCGCACATATTCCAATCCAAA 58.977 40.909 11.47 0.00 0.00 3.28
72 73 2.618241 GAGCGCACATATTCCAATCCAA 59.382 45.455 11.47 0.00 0.00 3.53
73 74 2.158769 AGAGCGCACATATTCCAATCCA 60.159 45.455 11.47 0.00 0.00 3.41
74 75 2.498167 AGAGCGCACATATTCCAATCC 58.502 47.619 11.47 0.00 0.00 3.01
75 76 3.313526 ACAAGAGCGCACATATTCCAATC 59.686 43.478 11.47 0.00 0.00 2.67
76 77 3.065786 CACAAGAGCGCACATATTCCAAT 59.934 43.478 11.47 0.00 0.00 3.16
77 78 2.419673 CACAAGAGCGCACATATTCCAA 59.580 45.455 11.47 0.00 0.00 3.53
78 79 2.009051 CACAAGAGCGCACATATTCCA 58.991 47.619 11.47 0.00 0.00 3.53
79 80 1.331756 CCACAAGAGCGCACATATTCC 59.668 52.381 11.47 0.00 0.00 3.01
80 81 1.331756 CCCACAAGAGCGCACATATTC 59.668 52.381 11.47 0.00 0.00 1.75
81 82 1.382522 CCCACAAGAGCGCACATATT 58.617 50.000 11.47 0.00 0.00 1.28
82 83 1.097547 GCCCACAAGAGCGCACATAT 61.098 55.000 11.47 0.00 0.00 1.78
83 84 1.745115 GCCCACAAGAGCGCACATA 60.745 57.895 11.47 0.00 0.00 2.29
84 85 2.184020 TAGCCCACAAGAGCGCACAT 62.184 55.000 11.47 0.00 0.00 3.21
85 86 2.184020 ATAGCCCACAAGAGCGCACA 62.184 55.000 11.47 0.00 0.00 4.57
86 87 0.179084 TATAGCCCACAAGAGCGCAC 60.179 55.000 11.47 2.25 0.00 5.34
87 88 0.758734 ATATAGCCCACAAGAGCGCA 59.241 50.000 11.47 0.00 0.00 6.09
88 89 1.151668 CATATAGCCCACAAGAGCGC 58.848 55.000 0.00 0.00 0.00 5.92
89 90 1.344438 TCCATATAGCCCACAAGAGCG 59.656 52.381 0.00 0.00 0.00 5.03
90 91 3.492102 TTCCATATAGCCCACAAGAGC 57.508 47.619 0.00 0.00 0.00 4.09
91 92 4.217118 GCAATTCCATATAGCCCACAAGAG 59.783 45.833 0.00 0.00 0.00 2.85
92 93 4.144297 GCAATTCCATATAGCCCACAAGA 58.856 43.478 0.00 0.00 0.00 3.02
93 94 3.890756 TGCAATTCCATATAGCCCACAAG 59.109 43.478 0.00 0.00 0.00 3.16
94 95 3.890756 CTGCAATTCCATATAGCCCACAA 59.109 43.478 0.00 0.00 0.00 3.33
95 96 3.489355 CTGCAATTCCATATAGCCCACA 58.511 45.455 0.00 0.00 0.00 4.17
96 97 2.821969 CCTGCAATTCCATATAGCCCAC 59.178 50.000 0.00 0.00 0.00 4.61
97 98 2.715880 TCCTGCAATTCCATATAGCCCA 59.284 45.455 0.00 0.00 0.00 5.36
98 99 3.439857 TCCTGCAATTCCATATAGCCC 57.560 47.619 0.00 0.00 0.00 5.19
99 100 5.012239 TCATTCCTGCAATTCCATATAGCC 58.988 41.667 0.00 0.00 0.00 3.93
100 101 6.770746 ATCATTCCTGCAATTCCATATAGC 57.229 37.500 0.00 0.00 0.00 2.97
101 102 8.799367 TCAAATCATTCCTGCAATTCCATATAG 58.201 33.333 0.00 0.00 0.00 1.31
102 103 8.709272 TCAAATCATTCCTGCAATTCCATATA 57.291 30.769 0.00 0.00 0.00 0.86
103 104 7.606135 TCAAATCATTCCTGCAATTCCATAT 57.394 32.000 0.00 0.00 0.00 1.78
104 105 7.606135 ATCAAATCATTCCTGCAATTCCATA 57.394 32.000 0.00 0.00 0.00 2.74
105 106 5.943349 TCAAATCATTCCTGCAATTCCAT 57.057 34.783 0.00 0.00 0.00 3.41
106 107 5.943349 ATCAAATCATTCCTGCAATTCCA 57.057 34.783 0.00 0.00 0.00 3.53
107 108 8.897872 AAATATCAAATCATTCCTGCAATTCC 57.102 30.769 0.00 0.00 0.00 3.01
134 135 9.463443 GCAAGAAAGTTAAATTGTGTTGACTAT 57.537 29.630 8.32 0.00 28.09 2.12
135 136 8.462811 TGCAAGAAAGTTAAATTGTGTTGACTA 58.537 29.630 8.32 0.00 28.09 2.59
136 137 7.319646 TGCAAGAAAGTTAAATTGTGTTGACT 58.680 30.769 8.32 0.00 0.00 3.41
137 138 7.254084 CCTGCAAGAAAGTTAAATTGTGTTGAC 60.254 37.037 8.32 2.88 34.07 3.18
138 139 6.756074 CCTGCAAGAAAGTTAAATTGTGTTGA 59.244 34.615 8.32 0.00 34.07 3.18
139 140 6.534793 ACCTGCAAGAAAGTTAAATTGTGTTG 59.465 34.615 0.00 0.00 34.07 3.33
140 141 6.639563 ACCTGCAAGAAAGTTAAATTGTGTT 58.360 32.000 0.00 0.00 34.07 3.32
141 142 6.127479 TGACCTGCAAGAAAGTTAAATTGTGT 60.127 34.615 0.00 0.00 34.07 3.72
142 143 6.272318 TGACCTGCAAGAAAGTTAAATTGTG 58.728 36.000 0.00 0.00 34.07 3.33
143 144 6.463995 TGACCTGCAAGAAAGTTAAATTGT 57.536 33.333 0.00 0.00 34.07 2.71
144 145 7.373493 AGATGACCTGCAAGAAAGTTAAATTG 58.627 34.615 0.00 0.00 34.07 2.32
145 146 7.530426 AGATGACCTGCAAGAAAGTTAAATT 57.470 32.000 0.00 0.00 34.07 1.82
146 147 7.231317 TGAAGATGACCTGCAAGAAAGTTAAAT 59.769 33.333 0.00 0.00 34.07 1.40
147 148 6.545666 TGAAGATGACCTGCAAGAAAGTTAAA 59.454 34.615 0.00 0.00 34.07 1.52
148 149 6.061441 TGAAGATGACCTGCAAGAAAGTTAA 58.939 36.000 0.00 0.00 34.07 2.01
149 150 5.620206 TGAAGATGACCTGCAAGAAAGTTA 58.380 37.500 0.00 0.00 34.07 2.24
150 151 4.464008 TGAAGATGACCTGCAAGAAAGTT 58.536 39.130 0.00 0.00 34.07 2.66
151 152 4.070716 CTGAAGATGACCTGCAAGAAAGT 58.929 43.478 0.00 0.00 34.07 2.66
152 153 4.321718 TCTGAAGATGACCTGCAAGAAAG 58.678 43.478 0.00 0.00 34.07 2.62
153 154 4.321718 CTCTGAAGATGACCTGCAAGAAA 58.678 43.478 0.00 0.00 34.07 2.52
154 155 3.867600 GCTCTGAAGATGACCTGCAAGAA 60.868 47.826 0.00 0.00 34.07 2.52
155 156 2.354503 GCTCTGAAGATGACCTGCAAGA 60.355 50.000 0.00 0.00 34.07 3.02
156 157 2.008329 GCTCTGAAGATGACCTGCAAG 58.992 52.381 0.00 0.00 27.65 4.01
157 158 1.627329 AGCTCTGAAGATGACCTGCAA 59.373 47.619 0.00 0.00 27.65 4.08
158 159 1.273759 AGCTCTGAAGATGACCTGCA 58.726 50.000 0.00 0.00 0.00 4.41
159 160 2.482839 GGTAGCTCTGAAGATGACCTGC 60.483 54.545 0.00 0.00 0.00 4.85
160 161 2.223688 CGGTAGCTCTGAAGATGACCTG 60.224 54.545 0.00 0.00 0.00 4.00
161 162 2.028130 CGGTAGCTCTGAAGATGACCT 58.972 52.381 0.00 0.00 0.00 3.85
162 163 1.537135 GCGGTAGCTCTGAAGATGACC 60.537 57.143 0.00 0.00 41.01 4.02
163 164 1.846541 GCGGTAGCTCTGAAGATGAC 58.153 55.000 0.00 0.00 41.01 3.06
175 176 0.317479 ATACGGATCCAAGCGGTAGC 59.683 55.000 13.41 0.00 45.58 3.58
176 177 1.340248 ACATACGGATCCAAGCGGTAG 59.660 52.381 13.41 0.00 0.00 3.18
177 178 1.067974 CACATACGGATCCAAGCGGTA 59.932 52.381 13.41 5.73 0.00 4.02
178 179 0.179084 CACATACGGATCCAAGCGGT 60.179 55.000 13.41 3.37 0.00 5.68
179 180 0.880278 CCACATACGGATCCAAGCGG 60.880 60.000 13.41 0.00 0.00 5.52
180 181 0.179084 ACCACATACGGATCCAAGCG 60.179 55.000 13.41 0.00 0.00 4.68
181 182 1.583054 GACCACATACGGATCCAAGC 58.417 55.000 13.41 0.00 0.00 4.01
182 183 1.762957 AGGACCACATACGGATCCAAG 59.237 52.381 13.41 0.00 31.41 3.61
183 184 1.874129 AGGACCACATACGGATCCAA 58.126 50.000 13.41 0.00 31.41 3.53
184 185 1.874129 AAGGACCACATACGGATCCA 58.126 50.000 13.41 0.00 31.41 3.41
185 186 2.963782 AGTAAGGACCACATACGGATCC 59.036 50.000 0.00 0.00 0.00 3.36
186 187 3.635373 TGAGTAAGGACCACATACGGATC 59.365 47.826 0.00 0.00 0.00 3.36
187 188 3.383825 GTGAGTAAGGACCACATACGGAT 59.616 47.826 0.00 0.00 31.06 4.18
188 189 2.756760 GTGAGTAAGGACCACATACGGA 59.243 50.000 0.00 0.00 31.06 4.69
189 190 2.758979 AGTGAGTAAGGACCACATACGG 59.241 50.000 0.00 0.00 32.33 4.02
190 191 3.181489 GGAGTGAGTAAGGACCACATACG 60.181 52.174 0.00 0.00 32.33 3.06
191 192 4.024670 AGGAGTGAGTAAGGACCACATAC 58.975 47.826 0.00 0.00 32.33 2.39
192 193 4.332683 AGGAGTGAGTAAGGACCACATA 57.667 45.455 0.00 0.00 32.33 2.29
193 194 3.191888 AGGAGTGAGTAAGGACCACAT 57.808 47.619 0.00 0.00 32.33 3.21
194 195 2.696526 AGGAGTGAGTAAGGACCACA 57.303 50.000 0.00 0.00 32.33 4.17
195 196 4.279145 TCATAGGAGTGAGTAAGGACCAC 58.721 47.826 0.00 0.00 0.00 4.16
196 197 4.603094 TCATAGGAGTGAGTAAGGACCA 57.397 45.455 0.00 0.00 0.00 4.02
197 198 5.934402 TTTCATAGGAGTGAGTAAGGACC 57.066 43.478 0.00 0.00 0.00 4.46
198 199 6.098409 TGGATTTCATAGGAGTGAGTAAGGAC 59.902 42.308 0.00 0.00 0.00 3.85
199 200 6.202331 TGGATTTCATAGGAGTGAGTAAGGA 58.798 40.000 0.00 0.00 0.00 3.36
200 201 6.463614 CCTGGATTTCATAGGAGTGAGTAAGG 60.464 46.154 0.00 0.00 33.33 2.69
201 202 6.463614 CCCTGGATTTCATAGGAGTGAGTAAG 60.464 46.154 0.00 0.00 33.33 2.34
202 203 5.366768 CCCTGGATTTCATAGGAGTGAGTAA 59.633 44.000 0.00 0.00 33.33 2.24
203 204 4.901849 CCCTGGATTTCATAGGAGTGAGTA 59.098 45.833 0.00 0.00 33.33 2.59
204 205 3.713764 CCCTGGATTTCATAGGAGTGAGT 59.286 47.826 0.00 0.00 33.33 3.41
205 206 3.969976 TCCCTGGATTTCATAGGAGTGAG 59.030 47.826 0.00 0.00 33.33 3.51
206 207 3.969976 CTCCCTGGATTTCATAGGAGTGA 59.030 47.826 0.00 0.00 39.30 3.41
207 208 3.495806 GCTCCCTGGATTTCATAGGAGTG 60.496 52.174 11.14 0.00 42.92 3.51
208 209 2.708325 GCTCCCTGGATTTCATAGGAGT 59.292 50.000 11.14 0.00 42.92 3.85
209 210 2.039613 GGCTCCCTGGATTTCATAGGAG 59.960 54.545 0.00 6.76 43.41 3.69
210 211 2.057922 GGCTCCCTGGATTTCATAGGA 58.942 52.381 0.00 0.00 33.33 2.94
211 212 2.061061 AGGCTCCCTGGATTTCATAGG 58.939 52.381 0.00 0.00 29.57 2.57
212 213 3.872459 AAGGCTCCCTGGATTTCATAG 57.128 47.619 0.00 0.00 32.13 2.23
213 214 4.726825 ACTAAAGGCTCCCTGGATTTCATA 59.273 41.667 0.00 0.00 32.13 2.15
214 215 3.529319 ACTAAAGGCTCCCTGGATTTCAT 59.471 43.478 0.00 0.00 32.13 2.57
215 216 2.919602 ACTAAAGGCTCCCTGGATTTCA 59.080 45.455 0.00 0.00 32.13 2.69
216 217 3.653835 ACTAAAGGCTCCCTGGATTTC 57.346 47.619 0.00 0.00 32.13 2.17
217 218 4.540502 AGTAACTAAAGGCTCCCTGGATTT 59.459 41.667 0.00 0.00 32.13 2.17
218 219 4.112331 AGTAACTAAAGGCTCCCTGGATT 58.888 43.478 0.00 0.00 32.13 3.01
219 220 3.737263 AGTAACTAAAGGCTCCCTGGAT 58.263 45.455 0.00 0.00 32.13 3.41
220 221 3.200958 AGTAACTAAAGGCTCCCTGGA 57.799 47.619 0.00 0.00 32.13 3.86
221 222 3.388350 CCTAGTAACTAAAGGCTCCCTGG 59.612 52.174 0.00 0.00 32.13 4.45
222 223 4.031611 ACCTAGTAACTAAAGGCTCCCTG 58.968 47.826 0.00 0.00 32.13 4.45
223 224 4.031611 CACCTAGTAACTAAAGGCTCCCT 58.968 47.826 0.00 0.00 33.42 4.20
224 225 3.431905 GCACCTAGTAACTAAAGGCTCCC 60.432 52.174 0.00 0.00 33.42 4.30
225 226 3.197116 TGCACCTAGTAACTAAAGGCTCC 59.803 47.826 0.00 0.00 33.42 4.70
226 227 4.467198 TGCACCTAGTAACTAAAGGCTC 57.533 45.455 0.00 0.00 33.42 4.70
227 228 4.565028 GGTTGCACCTAGTAACTAAAGGCT 60.565 45.833 0.00 0.00 41.84 4.58
228 229 3.688185 GGTTGCACCTAGTAACTAAAGGC 59.312 47.826 0.00 0.00 41.84 4.35
229 230 4.901868 TGGTTGCACCTAGTAACTAAAGG 58.098 43.478 6.83 0.00 41.84 3.11
230 231 7.280205 CCTATTGGTTGCACCTAGTAACTAAAG 59.720 40.741 6.83 0.00 43.90 1.85
231 232 7.038160 TCCTATTGGTTGCACCTAGTAACTAAA 60.038 37.037 6.83 0.00 43.90 1.85
232 233 6.441284 TCCTATTGGTTGCACCTAGTAACTAA 59.559 38.462 6.83 0.00 44.55 2.24
233 234 5.959594 TCCTATTGGTTGCACCTAGTAACTA 59.040 40.000 6.83 0.00 41.84 2.24
234 235 4.781087 TCCTATTGGTTGCACCTAGTAACT 59.219 41.667 6.83 0.00 41.84 2.24
235 236 5.093849 TCCTATTGGTTGCACCTAGTAAC 57.906 43.478 6.83 0.00 39.58 2.50
236 237 5.027460 TCTCCTATTGGTTGCACCTAGTAA 58.973 41.667 6.83 0.00 39.58 2.24
237 238 4.616553 TCTCCTATTGGTTGCACCTAGTA 58.383 43.478 6.83 0.00 39.58 1.82
238 239 3.450904 TCTCCTATTGGTTGCACCTAGT 58.549 45.455 6.83 0.00 39.58 2.57
239 240 4.384056 CATCTCCTATTGGTTGCACCTAG 58.616 47.826 6.83 2.22 39.58 3.02
240 241 3.136443 CCATCTCCTATTGGTTGCACCTA 59.864 47.826 6.83 0.41 39.58 3.08
241 242 2.092212 CCATCTCCTATTGGTTGCACCT 60.092 50.000 6.83 0.00 39.58 4.00
242 243 2.301346 CCATCTCCTATTGGTTGCACC 58.699 52.381 0.00 0.00 39.22 5.01
243 244 2.945668 GACCATCTCCTATTGGTTGCAC 59.054 50.000 0.00 0.00 46.14 4.57
244 245 2.419990 CGACCATCTCCTATTGGTTGCA 60.420 50.000 0.00 0.00 46.14 4.08
245 246 2.213499 CGACCATCTCCTATTGGTTGC 58.787 52.381 0.00 0.00 46.14 4.17
246 247 2.213499 GCGACCATCTCCTATTGGTTG 58.787 52.381 5.18 5.18 46.14 3.77
247 248 1.837439 TGCGACCATCTCCTATTGGTT 59.163 47.619 0.00 0.00 46.14 3.67
249 250 1.869754 CGTGCGACCATCTCCTATTGG 60.870 57.143 0.00 0.00 39.02 3.16
250 251 1.491670 CGTGCGACCATCTCCTATTG 58.508 55.000 0.00 0.00 0.00 1.90
251 252 0.389391 CCGTGCGACCATCTCCTATT 59.611 55.000 0.00 0.00 0.00 1.73
252 253 1.464376 CCCGTGCGACCATCTCCTAT 61.464 60.000 0.00 0.00 0.00 2.57
253 254 2.125326 CCCGTGCGACCATCTCCTA 61.125 63.158 0.00 0.00 0.00 2.94
254 255 3.461773 CCCGTGCGACCATCTCCT 61.462 66.667 0.00 0.00 0.00 3.69
256 257 2.088674 ATAGCCCGTGCGACCATCTC 62.089 60.000 0.00 0.00 44.33 2.75
257 258 0.826256 TATAGCCCGTGCGACCATCT 60.826 55.000 0.00 0.00 44.33 2.90
258 259 0.246635 ATATAGCCCGTGCGACCATC 59.753 55.000 0.00 0.00 44.33 3.51
259 260 0.685097 AATATAGCCCGTGCGACCAT 59.315 50.000 0.00 0.00 44.33 3.55
260 261 0.032952 GAATATAGCCCGTGCGACCA 59.967 55.000 0.00 0.00 44.33 4.02
261 262 0.032952 TGAATATAGCCCGTGCGACC 59.967 55.000 0.00 0.00 44.33 4.79
262 263 1.860676 TTGAATATAGCCCGTGCGAC 58.139 50.000 0.00 0.00 44.33 5.19
263 264 2.605837 TTTGAATATAGCCCGTGCGA 57.394 45.000 0.00 0.00 44.33 5.10
264 265 3.003275 ACATTTTGAATATAGCCCGTGCG 59.997 43.478 0.00 0.00 44.33 5.34
265 266 4.202010 ACACATTTTGAATATAGCCCGTGC 60.202 41.667 0.00 0.00 37.95 5.34
266 267 5.499139 ACACATTTTGAATATAGCCCGTG 57.501 39.130 0.00 0.00 0.00 4.94
267 268 5.235616 CGTACACATTTTGAATATAGCCCGT 59.764 40.000 0.00 0.00 0.00 5.28
268 269 5.464057 TCGTACACATTTTGAATATAGCCCG 59.536 40.000 0.00 0.00 0.00 6.13
269 270 6.854496 TCGTACACATTTTGAATATAGCCC 57.146 37.500 0.00 0.00 0.00 5.19
270 271 6.797033 GCATCGTACACATTTTGAATATAGCC 59.203 38.462 0.00 0.00 0.00 3.93
271 272 6.797033 GGCATCGTACACATTTTGAATATAGC 59.203 38.462 0.00 0.00 0.00 2.97
272 273 8.087982 AGGCATCGTACACATTTTGAATATAG 57.912 34.615 0.00 0.00 0.00 1.31
273 274 8.445275 AAGGCATCGTACACATTTTGAATATA 57.555 30.769 0.00 0.00 0.00 0.86
274 275 6.942532 AGGCATCGTACACATTTTGAATAT 57.057 33.333 0.00 0.00 0.00 1.28
275 276 6.751514 AAGGCATCGTACACATTTTGAATA 57.248 33.333 0.00 0.00 0.00 1.75
276 277 5.643379 AAGGCATCGTACACATTTTGAAT 57.357 34.783 0.00 0.00 0.00 2.57
277 278 5.009110 TCAAAGGCATCGTACACATTTTGAA 59.991 36.000 0.00 0.00 32.32 2.69
278 279 4.517075 TCAAAGGCATCGTACACATTTTGA 59.483 37.500 0.00 0.00 32.68 2.69
307 308 1.002257 AGTCGCATCCCATGTGCAA 60.002 52.632 7.47 0.00 42.62 4.08
321 322 1.738099 CTTTGCTCGGTCCCAGTCG 60.738 63.158 0.00 0.00 0.00 4.18
354 355 2.251409 ATCATCTTGATCCACGCCTG 57.749 50.000 0.00 0.00 29.59 4.85
367 368 8.070034 TGCCAATGAACTTTGATTAATCATCT 57.930 30.769 18.61 4.20 36.56 2.90
369 370 9.504708 TTTTGCCAATGAACTTTGATTAATCAT 57.495 25.926 18.61 3.98 36.56 2.45
401 402 0.548989 TGCCGCATATGGGTTTACCT 59.451 50.000 17.56 0.00 41.11 3.08
403 404 0.666374 GGTGCCGCATATGGGTTTAC 59.334 55.000 17.56 12.55 0.00 2.01
404 405 0.466555 GGGTGCCGCATATGGGTTTA 60.467 55.000 17.56 2.01 0.00 2.01
406 407 2.123897 GGGTGCCGCATATGGGTT 60.124 61.111 17.56 0.00 0.00 4.11
407 408 3.096495 AGGGTGCCGCATATGGGT 61.096 61.111 17.56 0.00 0.00 4.51
413 414 3.395702 TTACCGAGGGTGCCGCAT 61.396 61.111 0.00 0.00 36.19 4.73
417 418 0.035820 TTCATGTTACCGAGGGTGCC 60.036 55.000 0.00 0.00 36.19 5.01
436 437 2.196925 CCTCTAGATCCACGCCGCT 61.197 63.158 0.00 0.00 0.00 5.52
438 439 2.336809 GCCTCTAGATCCACGCCG 59.663 66.667 0.00 0.00 0.00 6.46
451 452 8.563123 AGAGTTAATTAACTTTAGTTGGCCTC 57.437 34.615 27.27 13.01 45.84 4.70
508 509 3.918220 GCGCTGAAGCCGACATCG 61.918 66.667 0.00 0.00 37.91 3.84
525 526 1.342819 GAGATGTGGGAGGGAGATTCG 59.657 57.143 0.00 0.00 0.00 3.34
564 565 2.856032 CAAACGCACCTCTCGCAG 59.144 61.111 0.00 0.00 0.00 5.18
591 592 1.210204 TGGCTGCTCCTCAGGGAAAT 61.210 55.000 0.00 0.00 43.06 2.17
619 620 2.281692 ACTTGCAGCATGTCGCCA 60.282 55.556 8.12 0.00 44.04 5.69
623 624 0.239347 GTCACCACTTGCAGCATGTC 59.761 55.000 10.93 0.00 39.31 3.06
624 625 0.179009 AGTCACCACTTGCAGCATGT 60.179 50.000 8.12 8.12 39.31 3.21
630 631 2.591429 CGCCAGTCACCACTTGCA 60.591 61.111 0.00 0.00 40.62 4.08
639 640 4.742201 GCCGAAGAGCGCCAGTCA 62.742 66.667 2.29 0.00 39.11 3.41
694 695 3.873801 GCTGGGCAAGAGATTTACCAGAA 60.874 47.826 12.31 0.00 46.38 3.02
755 756 5.009010 CCATTTGAAATCATTCCTCCCGTAG 59.991 44.000 0.00 0.00 34.49 3.51
828 829 7.173722 AGGATGCTGGAATGAAGGATATTTAG 58.826 38.462 0.00 0.00 0.00 1.85
860 861 9.678260 GCATTATATAGGTCAGAAATTCCAGAT 57.322 33.333 0.00 0.00 0.00 2.90
894 895 4.899352 ATTCCAGAGTTAGACAGCTGTT 57.101 40.909 22.65 13.26 0.00 3.16
897 898 5.247110 TCAGAAATTCCAGAGTTAGACAGCT 59.753 40.000 0.00 0.00 0.00 4.24
899 900 5.872070 GGTCAGAAATTCCAGAGTTAGACAG 59.128 44.000 0.00 0.00 0.00 3.51
901 902 6.043854 AGGTCAGAAATTCCAGAGTTAGAC 57.956 41.667 0.00 0.00 0.00 2.59
1581 1588 3.219281 TGTTTTGCCTAGACCTCCAAAC 58.781 45.455 0.00 0.00 0.00 2.93
1676 1686 3.359950 AGAAGATTTGGAATGTCAGGCC 58.640 45.455 0.00 0.00 0.00 5.19
1942 3297 5.646606 TCAAAACTTCCACTGTTTGTTAGC 58.353 37.500 0.00 0.00 37.64 3.09
1989 3504 9.917129 TGATTTTCTCGTACAGATTGTTAACTA 57.083 29.630 7.22 0.00 0.00 2.24
2599 4829 3.818773 CCCAAAGAACTCCGTACATGTTT 59.181 43.478 2.30 0.00 0.00 2.83
2713 4943 7.772166 TCCGGATACATAGCAAGATATAACAG 58.228 38.462 0.00 0.00 0.00 3.16
3066 5305 7.553044 ACCTGTGACAAACTAATATTTCCTAGC 59.447 37.037 0.00 0.00 0.00 3.42
3128 5370 1.768275 TGAACTTTGACAGAGGAGGCA 59.232 47.619 0.00 0.00 0.00 4.75
3129 5374 2.550830 TGAACTTTGACAGAGGAGGC 57.449 50.000 0.00 0.00 0.00 4.70
3241 5503 3.259064 GTCTTGGTAGCTGCAAACGATA 58.741 45.455 3.61 0.00 0.00 2.92
3244 5506 1.195448 CTGTCTTGGTAGCTGCAAACG 59.805 52.381 3.61 0.00 0.00 3.60
3319 5599 6.835174 AGTGTGGCAGATGAAATATATCAGT 58.165 36.000 0.00 0.00 31.76 3.41
3328 5608 1.872952 CGACAAGTGTGGCAGATGAAA 59.127 47.619 0.00 0.00 30.49 2.69
3356 5636 6.012157 AGGCAGCTTACCTTGATATCCAATAT 60.012 38.462 0.00 0.00 31.87 1.28
3370 5650 0.475906 ATCCCATCAGGCAGCTTACC 59.524 55.000 0.00 0.00 34.51 2.85
3513 5793 1.596477 GGCATCCTCATCTCCGCAC 60.596 63.158 0.00 0.00 0.00 5.34
3515 5795 2.356793 CGGCATCCTCATCTCCGC 60.357 66.667 0.00 0.00 33.36 5.54
3518 5798 1.040646 TACACCGGCATCCTCATCTC 58.959 55.000 0.00 0.00 0.00 2.75
3523 5803 0.527817 CGTCTTACACCGGCATCCTC 60.528 60.000 0.00 0.00 0.00 3.71
3528 5808 1.739929 CATGCGTCTTACACCGGCA 60.740 57.895 0.00 0.00 38.09 5.69
3559 5839 8.056407 AGCTTACAAAGTTTTCTCAAAGAAGT 57.944 30.769 0.00 0.00 35.37 3.01
3581 5861 2.299521 GTATGTACAGGGACTCGAGCT 58.700 52.381 13.61 0.00 34.60 4.09
3635 5915 0.615331 CTGAAGGCTGTAGGGAGCAA 59.385 55.000 0.00 0.00 41.08 3.91
3636 5916 1.903877 GCTGAAGGCTGTAGGGAGCA 61.904 60.000 0.00 0.00 41.08 4.26
3637 5917 1.153269 GCTGAAGGCTGTAGGGAGC 60.153 63.158 0.00 0.00 38.34 4.70
3663 5946 0.604578 GCCAATCAAAAGCTCTGCCA 59.395 50.000 0.00 0.00 0.00 4.92
3671 5954 1.216178 CAGCCCCGCCAATCAAAAG 59.784 57.895 0.00 0.00 0.00 2.27
3721 6004 3.926616 ACTCACGGAGGTTATGAAGTTG 58.073 45.455 5.98 0.00 33.35 3.16
3758 6041 0.463295 ACCATCATCAAGCAGCTCGG 60.463 55.000 0.00 0.00 0.00 4.63
3802 6085 0.249741 AAACCAAGGTCGACGAGGTG 60.250 55.000 21.06 11.31 32.57 4.00
3803 6086 1.000171 GTAAACCAAGGTCGACGAGGT 60.000 52.381 16.51 16.51 33.41 3.85
3818 6101 2.665052 GGTGATCTTCGGACGTGTAAAC 59.335 50.000 0.00 0.00 0.00 2.01
3825 6108 2.139917 TGTTTTGGTGATCTTCGGACG 58.860 47.619 0.00 0.00 0.00 4.79
3971 6254 6.003326 TGCTTCTGTACATCCATCTTGAAAA 58.997 36.000 0.00 0.00 0.00 2.29
3978 6261 3.553511 CGTTCTGCTTCTGTACATCCATC 59.446 47.826 0.00 0.00 0.00 3.51
4013 6296 2.434884 CCAAGTGCTCGATGCCGT 60.435 61.111 4.73 0.00 42.00 5.68
4052 6335 1.629013 CTTGAAGCACGAGATACGCA 58.371 50.000 0.00 0.00 46.94 5.24
4066 6349 3.973206 TTGAGATTCCGTAGCCTTGAA 57.027 42.857 0.00 0.00 0.00 2.69
4069 6352 4.553330 TCTTTTGAGATTCCGTAGCCTT 57.447 40.909 0.00 0.00 0.00 4.35
4108 6391 2.101582 GCCTGTCGACAATACTCCTGAT 59.898 50.000 20.49 0.00 0.00 2.90
4145 6428 4.164294 CTGGTAAAAACGGACTAGAGTCG 58.836 47.826 0.00 0.00 45.65 4.18
4146 6429 4.922103 CACTGGTAAAAACGGACTAGAGTC 59.078 45.833 0.00 0.75 44.04 3.36
4184 6467 2.924290 AGTCGAAGCAGAAATTAGTCGC 59.076 45.455 0.00 0.00 0.00 5.19
4211 6494 1.134340 TGGAAACTTGCACGTACCAGT 60.134 47.619 14.85 0.00 0.00 4.00
4498 6784 1.080705 GAACTCTACGCAGCGTGGT 60.081 57.895 30.67 21.28 41.39 4.16
4499 6785 1.805945 GGAACTCTACGCAGCGTGG 60.806 63.158 30.67 27.41 41.39 4.94
4500 6786 1.073216 CAGGAACTCTACGCAGCGTG 61.073 60.000 30.67 19.23 37.31 5.34
4501 6787 1.213013 CAGGAACTCTACGCAGCGT 59.787 57.895 26.25 26.25 39.93 5.07
4502 6788 0.450583 TACAGGAACTCTACGCAGCG 59.549 55.000 14.82 14.82 34.60 5.18
4503 6789 1.799548 GCTACAGGAACTCTACGCAGC 60.800 57.143 0.00 0.00 34.60 5.25
4504 6790 1.472878 TGCTACAGGAACTCTACGCAG 59.527 52.381 0.00 0.00 34.60 5.18
4507 6793 4.576216 ATCATGCTACAGGAACTCTACG 57.424 45.455 0.00 0.00 34.60 3.51
4567 9279 5.721000 TGCAGGAAAACCTTTCCATGATAAT 59.279 36.000 18.03 0.00 41.00 1.28
4612 9324 0.744414 TGGAAATCAGGCTAGTGCGC 60.744 55.000 0.00 0.00 40.82 6.09
4613 9325 1.009829 GTGGAAATCAGGCTAGTGCG 58.990 55.000 0.00 0.00 40.82 5.34
4617 9329 2.093447 AGTTCCGTGGAAATCAGGCTAG 60.093 50.000 2.23 0.00 35.75 3.42
4633 9345 6.583562 AGAGCATACACCTGTATTTAGTTCC 58.416 40.000 0.00 0.00 39.06 3.62
4634 9346 8.414778 ACTAGAGCATACACCTGTATTTAGTTC 58.585 37.037 0.00 0.00 39.06 3.01
4644 9356 4.456280 TGTGAACTAGAGCATACACCTG 57.544 45.455 0.00 0.00 0.00 4.00
4687 9399 8.352201 TGAATTAGAAAACCAGACAACATCTTG 58.648 33.333 0.00 0.00 34.41 3.02
4718 9430 6.037062 GCACATCATACAGCACAACATAGTAA 59.963 38.462 0.00 0.00 0.00 2.24
4791 9592 6.467364 GCTATCTCAAGAATCGAAAGCAAAAC 59.533 38.462 0.00 0.00 0.00 2.43
4848 9649 3.398406 AGTTGCCGCCAAAAATTAAAGG 58.602 40.909 0.00 0.00 31.68 3.11
4860 9661 0.037790 TGCCAATAAAAGTTGCCGCC 60.038 50.000 0.00 0.00 0.00 6.13
4877 9678 6.170675 AGTTCATTTCTCACGTTAATCTGC 57.829 37.500 0.00 0.00 0.00 4.26
4878 9679 7.063426 TGCTAGTTCATTTCTCACGTTAATCTG 59.937 37.037 0.00 0.00 0.00 2.90
4913 9714 1.489649 CAGGTGAGGGAGCTCATCAAT 59.510 52.381 19.14 10.55 36.96 2.57
4914 9715 0.907486 CAGGTGAGGGAGCTCATCAA 59.093 55.000 19.14 4.86 36.96 2.57
4921 9722 0.107654 AATTACGCAGGTGAGGGAGC 60.108 55.000 0.00 0.00 0.00 4.70
4959 9760 7.880160 TTCCTACAAACCAATATCATTGAGG 57.120 36.000 0.46 0.00 0.00 3.86
4998 9803 5.472820 CAGAGGCTGGAAATCAATAGGAATC 59.527 44.000 0.00 0.00 0.00 2.52
5055 10164 5.645497 AGGAATGTTCAGTTCAATACAGAGC 59.355 40.000 0.00 0.00 0.00 4.09
5117 10226 8.565896 AACTGAGCAAATTACAATACATCTCA 57.434 30.769 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.