Multiple sequence alignment - TraesCS2D01G575700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G575700 chr2D 100.000 4010 0 0 1 4010 639586618 639590627 0.000000e+00 7406
1 TraesCS2D01G575700 chr2D 95.767 945 38 2 1 944 639570991 639571934 0.000000e+00 1522
2 TraesCS2D01G575700 chr2D 82.913 872 109 26 1221 2067 639569318 639570174 0.000000e+00 749
3 TraesCS2D01G575700 chr2D 77.193 285 25 13 2075 2340 639587575 639587838 3.250000e-26 130
4 TraesCS2D01G575700 chr2D 77.193 285 25 13 958 1221 639588692 639588957 3.250000e-26 130
5 TraesCS2D01G575700 chrUn 86.033 2198 153 70 1890 4010 28327849 28329969 0.000000e+00 2217
6 TraesCS2D01G575700 chrUn 80.152 1184 129 43 1221 2340 28326699 28327840 0.000000e+00 787
7 TraesCS2D01G575700 chrUn 93.728 287 18 0 945 1231 28327564 28327850 7.960000e-117 431
8 TraesCS2D01G575700 chr4B 86.374 1732 119 45 1221 2869 671668847 671667150 0.000000e+00 1783
9 TraesCS2D01G575700 chr1D 93.129 946 60 5 1 944 388595804 388594862 0.000000e+00 1382
10 TraesCS2D01G575700 chr1D 92.865 953 57 10 2 948 311261064 311260117 0.000000e+00 1373
11 TraesCS2D01G575700 chr1D 81.611 745 95 13 3282 4010 211939135 211939853 2.690000e-161 579
12 TraesCS2D01G575700 chr1D 80.914 744 91 17 3285 4010 391641640 391640930 1.270000e-149 540
13 TraesCS2D01G575700 chr7D 92.940 949 59 7 1 944 582547763 582548708 0.000000e+00 1375
14 TraesCS2D01G575700 chr7D 92.835 949 60 7 1 944 582554576 582555521 0.000000e+00 1369
15 TraesCS2D01G575700 chr7D 82.624 564 77 6 3449 4010 548563249 548563793 2.800000e-131 479
16 TraesCS2D01G575700 chr7D 76.730 679 109 21 3282 3933 439466484 439467140 2.310000e-87 333
17 TraesCS2D01G575700 chr7D 75.720 486 90 22 3282 3749 575873119 575873594 6.750000e-53 219
18 TraesCS2D01G575700 chr4D 92.827 948 63 5 1 946 17257085 17256141 0.000000e+00 1369
19 TraesCS2D01G575700 chr4D 92.722 948 62 7 1 945 323349196 323350139 0.000000e+00 1362
20 TraesCS2D01G575700 chr4D 78.961 751 119 22 3265 4010 478022651 478023367 3.630000e-130 475
21 TraesCS2D01G575700 chr6D 92.819 947 60 8 1 944 420916342 420915401 0.000000e+00 1365
22 TraesCS2D01G575700 chr5D 92.737 950 60 8 1 944 413352904 413351958 0.000000e+00 1363
23 TraesCS2D01G575700 chr5D 81.004 737 98 11 3285 4010 4713348 4712643 7.580000e-152 547
24 TraesCS2D01G575700 chr5D 80.842 736 103 10 3285 4010 4409877 4409170 9.800000e-151 544
25 TraesCS2D01G575700 chr5D 80.868 737 101 12 3285 4010 4477972 4477265 9.800000e-151 544
26 TraesCS2D01G575700 chr5D 80.842 736 103 10 3285 4010 4623931 4623224 9.800000e-151 544
27 TraesCS2D01G575700 chr5D 80.938 682 89 10 3285 3955 4787645 4786994 5.980000e-138 501
28 TraesCS2D01G575700 chr1A 81.604 723 90 14 3302 4010 267790443 267791136 3.500000e-155 558
29 TraesCS2D01G575700 chr1A 82.166 471 75 9 3282 3744 6160686 6161155 2.900000e-106 396
30 TraesCS2D01G575700 chr3D 80.926 734 99 18 3279 4010 581021767 581022461 3.530000e-150 542
31 TraesCS2D01G575700 chr5A 79.424 729 101 18 3285 4010 353987811 353987129 1.690000e-128 470
32 TraesCS2D01G575700 chr5A 91.935 310 18 3 945 1247 707793773 707794082 1.030000e-115 427
33 TraesCS2D01G575700 chr5A 82.261 513 49 16 1728 2210 707793428 707793928 4.830000e-109 405
34 TraesCS2D01G575700 chr5A 77.807 766 75 49 2075 2781 659367637 659368366 6.290000e-103 385
35 TraesCS2D01G575700 chr5A 87.248 298 20 5 945 1224 709179248 709178951 1.390000e-84 324
36 TraesCS2D01G575700 chr5A 86.441 295 22 5 945 1221 659367624 659367918 1.400000e-79 307
37 TraesCS2D01G575700 chr5A 97.647 85 1 1 2587 2671 709178683 709178600 1.160000e-30 145
38 TraesCS2D01G575700 chr5A 92.708 96 7 0 2692 2787 709178606 709178511 5.400000e-29 139
39 TraesCS2D01G575700 chr5B 79.150 729 107 16 3288 4010 300098872 300099561 2.820000e-126 462
40 TraesCS2D01G575700 chr5B 79.814 431 71 13 3266 3684 25263697 25263271 2.340000e-77 300
41 TraesCS2D01G575700 chr1B 77.734 768 123 21 3268 4010 10043532 10044276 1.030000e-115 427
42 TraesCS2D01G575700 chr1B 80.736 462 78 6 3285 3744 117174672 117174220 2.290000e-92 350
43 TraesCS2D01G575700 chr1B 76.183 676 120 19 3282 3944 681077726 681078373 6.470000e-83 318
44 TraesCS2D01G575700 chr4A 77.235 716 120 22 3272 3973 157694700 157695386 2.920000e-101 379


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G575700 chr2D 639586618 639590627 4009 False 2555.333333 7406 84.795333 1 4010 3 chr2D.!!$F2 4009
1 TraesCS2D01G575700 chr2D 639569318 639571934 2616 False 1135.500000 1522 89.340000 1 2067 2 chr2D.!!$F1 2066
2 TraesCS2D01G575700 chrUn 28326699 28329969 3270 False 1145.000000 2217 86.637667 945 4010 3 chrUn.!!$F1 3065
3 TraesCS2D01G575700 chr4B 671667150 671668847 1697 True 1783.000000 1783 86.374000 1221 2869 1 chr4B.!!$R1 1648
4 TraesCS2D01G575700 chr1D 388594862 388595804 942 True 1382.000000 1382 93.129000 1 944 1 chr1D.!!$R2 943
5 TraesCS2D01G575700 chr1D 311260117 311261064 947 True 1373.000000 1373 92.865000 2 948 1 chr1D.!!$R1 946
6 TraesCS2D01G575700 chr1D 211939135 211939853 718 False 579.000000 579 81.611000 3282 4010 1 chr1D.!!$F1 728
7 TraesCS2D01G575700 chr1D 391640930 391641640 710 True 540.000000 540 80.914000 3285 4010 1 chr1D.!!$R3 725
8 TraesCS2D01G575700 chr7D 582547763 582548708 945 False 1375.000000 1375 92.940000 1 944 1 chr7D.!!$F4 943
9 TraesCS2D01G575700 chr7D 582554576 582555521 945 False 1369.000000 1369 92.835000 1 944 1 chr7D.!!$F5 943
10 TraesCS2D01G575700 chr7D 548563249 548563793 544 False 479.000000 479 82.624000 3449 4010 1 chr7D.!!$F2 561
11 TraesCS2D01G575700 chr7D 439466484 439467140 656 False 333.000000 333 76.730000 3282 3933 1 chr7D.!!$F1 651
12 TraesCS2D01G575700 chr4D 17256141 17257085 944 True 1369.000000 1369 92.827000 1 946 1 chr4D.!!$R1 945
13 TraesCS2D01G575700 chr4D 323349196 323350139 943 False 1362.000000 1362 92.722000 1 945 1 chr4D.!!$F1 944
14 TraesCS2D01G575700 chr4D 478022651 478023367 716 False 475.000000 475 78.961000 3265 4010 1 chr4D.!!$F2 745
15 TraesCS2D01G575700 chr6D 420915401 420916342 941 True 1365.000000 1365 92.819000 1 944 1 chr6D.!!$R1 943
16 TraesCS2D01G575700 chr5D 413351958 413352904 946 True 1363.000000 1363 92.737000 1 944 1 chr5D.!!$R6 943
17 TraesCS2D01G575700 chr5D 4712643 4713348 705 True 547.000000 547 81.004000 3285 4010 1 chr5D.!!$R4 725
18 TraesCS2D01G575700 chr5D 4409170 4409877 707 True 544.000000 544 80.842000 3285 4010 1 chr5D.!!$R1 725
19 TraesCS2D01G575700 chr5D 4477265 4477972 707 True 544.000000 544 80.868000 3285 4010 1 chr5D.!!$R2 725
20 TraesCS2D01G575700 chr5D 4623224 4623931 707 True 544.000000 544 80.842000 3285 4010 1 chr5D.!!$R3 725
21 TraesCS2D01G575700 chr5D 4786994 4787645 651 True 501.000000 501 80.938000 3285 3955 1 chr5D.!!$R5 670
22 TraesCS2D01G575700 chr1A 267790443 267791136 693 False 558.000000 558 81.604000 3302 4010 1 chr1A.!!$F2 708
23 TraesCS2D01G575700 chr3D 581021767 581022461 694 False 542.000000 542 80.926000 3279 4010 1 chr3D.!!$F1 731
24 TraesCS2D01G575700 chr5A 353987129 353987811 682 True 470.000000 470 79.424000 3285 4010 1 chr5A.!!$R1 725
25 TraesCS2D01G575700 chr5A 707793428 707794082 654 False 416.000000 427 87.098000 945 2210 2 chr5A.!!$F2 1265
26 TraesCS2D01G575700 chr5A 659367624 659368366 742 False 346.000000 385 82.124000 945 2781 2 chr5A.!!$F1 1836
27 TraesCS2D01G575700 chr5A 709178511 709179248 737 True 202.666667 324 92.534333 945 2787 3 chr5A.!!$R2 1842
28 TraesCS2D01G575700 chr5B 300098872 300099561 689 False 462.000000 462 79.150000 3288 4010 1 chr5B.!!$F1 722
29 TraesCS2D01G575700 chr1B 10043532 10044276 744 False 427.000000 427 77.734000 3268 4010 1 chr1B.!!$F1 742
30 TraesCS2D01G575700 chr1B 681077726 681078373 647 False 318.000000 318 76.183000 3282 3944 1 chr1B.!!$F2 662
31 TraesCS2D01G575700 chr4A 157694700 157695386 686 False 379.000000 379 77.235000 3272 3973 1 chr4A.!!$F1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 2643 0.035534 ATAATGCTGTCGGTGCCACA 60.036 50.0 0.0 0.0 0.0 4.17 F
1426 3129 0.104487 TTGTGGCTTTGTCGGTCGTA 59.896 50.0 0.0 0.0 0.0 3.43 F
2574 4370 0.167470 CTGCTGACCGATTTGCACTG 59.833 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2786 4622 0.038159 GGATCGACCGATTGCTAGGG 60.038 60.0 6.36 0.0 34.60 3.53 R
2787 4623 0.962489 AGGATCGACCGATTGCTAGG 59.038 55.0 6.36 0.0 44.74 3.02 R
3934 5909 0.949105 ATTCGGTCTTGCACGTCCAC 60.949 55.0 7.22 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 1793 0.390209 GTTAAGCGTGCGGACCCTAA 60.390 55.000 0.00 0.00 0.00 2.69
296 1974 0.174845 TTGCCCGAGATTCGATCGTT 59.825 50.000 15.94 3.86 43.74 3.85
516 2194 3.202595 ACCTTCGGAGATACCTGTAGAGT 59.797 47.826 0.00 0.00 35.04 3.24
601 2279 4.346709 TCCGGGAGTTGCATAATCTCATAA 59.653 41.667 0.00 0.00 0.00 1.90
724 2403 3.809832 CCTAATGATGTGATCCCGTTCAC 59.190 47.826 4.06 4.06 45.05 3.18
776 2455 9.362151 AGGAAACTTAACCATCTTTGATTAACA 57.638 29.630 0.00 0.00 37.44 2.41
800 2479 8.732531 ACAAGCTAGTTTAGTAGAGACTTACTG 58.267 37.037 0.00 0.00 37.10 2.74
802 2481 7.631933 AGCTAGTTTAGTAGAGACTTACTGGA 58.368 38.462 0.00 0.00 37.10 3.86
840 2520 7.926018 TGTCTATGTATCCACACATGTATCAAC 59.074 37.037 0.00 0.00 39.46 3.18
953 2633 6.239402 GGGCATATTTCCTTCAATAATGCTGT 60.239 38.462 0.00 0.00 31.15 4.40
963 2643 0.035534 ATAATGCTGTCGGTGCCACA 60.036 50.000 0.00 0.00 0.00 4.17
976 2656 0.895100 TGCCACATGTCCCAGCTTTC 60.895 55.000 0.00 0.00 0.00 2.62
978 2658 1.619654 CCACATGTCCCAGCTTTCAA 58.380 50.000 0.00 0.00 0.00 2.69
1066 2749 5.118817 GGCTAGTAATTACTGCTCGCAATAC 59.881 44.000 25.27 9.47 37.10 1.89
1086 2780 8.188799 GCAATACTAGGTTATTTTTGGAAGGAC 58.811 37.037 0.00 0.00 0.00 3.85
1159 2857 5.887598 CCCCTTGTTCTGATTGATCAACATA 59.112 40.000 11.07 1.59 36.18 2.29
1166 2869 6.244552 TCTGATTGATCAACATAAGAGGCT 57.755 37.500 11.07 0.00 36.18 4.58
1167 2870 6.053650 TCTGATTGATCAACATAAGAGGCTG 58.946 40.000 11.07 0.00 36.18 4.85
1185 2888 2.751806 GCTGAACTTGGATTTGCTAGCT 59.248 45.455 17.23 0.00 0.00 3.32
1244 2947 7.417797 GCAACCCTATAAACACATGGAATTCAT 60.418 37.037 7.93 0.00 36.31 2.57
1287 2990 4.322385 GCAAAAGCCGCCGACGTT 62.322 61.111 0.00 0.00 37.70 3.99
1309 3012 4.392921 AATGAGACCTTGTCGGACATAG 57.607 45.455 12.26 11.56 37.67 2.23
1328 3031 6.853490 ACATAGGAGATACACTACCATCTCA 58.147 40.000 12.28 0.00 45.97 3.27
1333 3036 3.316588 AGATACACTACCATCTCACGCAG 59.683 47.826 0.00 0.00 0.00 5.18
1336 3039 1.107114 ACTACCATCTCACGCAGGAG 58.893 55.000 0.00 0.00 36.21 3.69
1346 3049 0.947244 CACGCAGGAGCAAAGAAGTT 59.053 50.000 0.00 0.00 42.27 2.66
1349 3052 1.398960 CGCAGGAGCAAAGAAGTTTCG 60.399 52.381 0.00 0.00 42.27 3.46
1411 3114 1.597854 TGCGGCCTGAGACTTTGTG 60.598 57.895 0.00 0.00 0.00 3.33
1426 3129 0.104487 TTGTGGCTTTGTCGGTCGTA 59.896 50.000 0.00 0.00 0.00 3.43
1437 3140 0.466922 TCGGTCGTAGATCTTCCCCC 60.467 60.000 0.00 0.00 40.67 5.40
1438 3141 0.754217 CGGTCGTAGATCTTCCCCCA 60.754 60.000 0.00 0.00 40.67 4.96
1439 3142 0.751452 GGTCGTAGATCTTCCCCCAC 59.249 60.000 0.00 0.00 40.67 4.61
1456 3159 4.864334 CGCTCCCAGGCCCATGAC 62.864 72.222 0.00 0.00 0.00 3.06
1460 3163 2.276309 CTCCCAGGCCCATGACTTCC 62.276 65.000 0.00 0.00 0.00 3.46
1465 3168 1.224003 AGGCCCATGACTTCCCCATT 61.224 55.000 0.00 0.00 0.00 3.16
1544 3247 0.887933 TGCCAAGCCGAAAATCTTCC 59.112 50.000 0.00 0.00 0.00 3.46
1617 3320 0.182537 CATCCGGAATAAGGCCACCA 59.817 55.000 9.01 0.00 0.00 4.17
1637 3340 4.140947 ACCAATCCATACCATAGTGCCAAT 60.141 41.667 0.00 0.00 0.00 3.16
1639 3342 2.862541 TCCATACCATAGTGCCAATGC 58.137 47.619 0.00 0.00 38.26 3.56
1649 3352 1.667151 TGCCAATGCAAAGCACCTC 59.333 52.632 4.71 0.00 46.66 3.85
1650 3353 1.114119 TGCCAATGCAAAGCACCTCA 61.114 50.000 4.71 0.00 46.66 3.86
1657 3360 1.724582 GCAAAGCACCTCACAACGGT 61.725 55.000 0.00 0.00 34.38 4.83
1662 3365 0.249398 GCACCTCACAACGGTAGGAT 59.751 55.000 1.77 0.00 34.34 3.24
1675 3378 1.139058 GGTAGGATCGGAGCACAATGT 59.861 52.381 0.00 0.00 0.00 2.71
1692 3418 1.672356 GTGCCTCGTCAACCATGCT 60.672 57.895 0.00 0.00 0.00 3.79
1714 3440 5.221244 GCTTGACAAACAAACCTACCAGATT 60.221 40.000 0.00 0.00 38.08 2.40
1716 3442 5.441500 TGACAAACAAACCTACCAGATTGA 58.558 37.500 0.00 0.00 0.00 2.57
1720 3446 4.657814 ACAAACCTACCAGATTGACCAT 57.342 40.909 0.00 0.00 0.00 3.55
1740 3466 4.442706 CATAGAGGCACTTCATTTACCGT 58.557 43.478 0.00 0.00 41.55 4.83
1832 3558 2.088423 CACTAATAAACCCCTTGCGCA 58.912 47.619 5.66 5.66 0.00 6.09
1833 3559 2.089201 ACTAATAAACCCCTTGCGCAC 58.911 47.619 11.12 0.00 0.00 5.34
1871 3600 3.760035 GAGAGCCGCCGGAGACAA 61.760 66.667 7.68 0.00 0.00 3.18
1885 3614 1.212751 GACAACGGCAAATGGAGGC 59.787 57.895 0.00 0.00 0.00 4.70
2002 3747 6.294473 TGTGCAAATATGAAATGGGTGTTTT 58.706 32.000 0.00 0.00 0.00 2.43
2003 3748 6.769822 TGTGCAAATATGAAATGGGTGTTTTT 59.230 30.769 0.00 0.00 0.00 1.94
2073 3818 4.335315 CCAGTTGTGTCTTTTCTGCTGTAA 59.665 41.667 0.00 0.00 0.00 2.41
2110 3855 7.442656 TCACCTTTTAGTAACTTCCTCAAGAG 58.557 38.462 0.00 0.00 33.34 2.85
2196 3942 8.472007 TCGCCATAATAGGTTATTTTTGGAAT 57.528 30.769 11.56 0.00 34.61 3.01
2234 3984 5.135383 AGTTCATTCCATCATACACCCATG 58.865 41.667 0.00 0.00 0.00 3.66
2238 3992 4.371624 TTCCATCATACACCCATGGATC 57.628 45.455 15.22 0.00 44.49 3.36
2296 4051 3.318839 TGTTCTGCTCAACTTGGATTTGG 59.681 43.478 0.90 0.00 0.00 3.28
2341 4103 4.192000 GTGTCAGATCACGGCAGG 57.808 61.111 0.00 0.00 0.00 4.85
2349 4122 2.370647 GATCACGGCAGGCTCCCTAC 62.371 65.000 0.00 0.00 29.64 3.18
2353 4126 1.224592 CGGCAGGCTCCCTACAAAT 59.775 57.895 0.00 0.00 29.64 2.32
2358 4131 3.245052 GGCAGGCTCCCTACAAATCATAT 60.245 47.826 0.00 0.00 29.64 1.78
2359 4132 4.019321 GGCAGGCTCCCTACAAATCATATA 60.019 45.833 0.00 0.00 29.64 0.86
2394 4167 3.665675 AAGCTGCACCGACCGATCC 62.666 63.158 1.02 0.00 0.00 3.36
2490 4286 1.592400 CCTCTCTCGCCACGGTTACA 61.592 60.000 0.00 0.00 0.00 2.41
2510 4306 3.492011 ACAAGTAAGTAAAACCTCACGCG 59.508 43.478 3.53 3.53 0.00 6.01
2511 4307 2.064014 AGTAAGTAAAACCTCACGCGC 58.936 47.619 5.73 0.00 0.00 6.86
2535 4331 1.609208 GCTGGCTGTTTTCTCTTGGA 58.391 50.000 0.00 0.00 0.00 3.53
2537 4333 1.538950 CTGGCTGTTTTCTCTTGGAGC 59.461 52.381 0.00 0.00 0.00 4.70
2567 4363 2.270205 CAGGCCTGCTGACCGATT 59.730 61.111 22.33 0.00 0.00 3.34
2568 4364 1.377725 CAGGCCTGCTGACCGATTT 60.378 57.895 22.33 0.00 0.00 2.17
2569 4365 1.377725 AGGCCTGCTGACCGATTTG 60.378 57.895 3.11 0.00 0.00 2.32
2570 4366 2.486966 GCCTGCTGACCGATTTGC 59.513 61.111 0.00 0.00 0.00 3.68
2572 4368 1.503542 CCTGCTGACCGATTTGCAC 59.496 57.895 0.00 0.00 0.00 4.57
2573 4369 0.957395 CCTGCTGACCGATTTGCACT 60.957 55.000 0.00 0.00 0.00 4.40
2574 4370 0.167470 CTGCTGACCGATTTGCACTG 59.833 55.000 0.00 0.00 0.00 3.66
2575 4371 1.154150 GCTGACCGATTTGCACTGC 60.154 57.895 0.00 0.00 0.00 4.40
2576 4372 1.133253 CTGACCGATTTGCACTGCG 59.867 57.895 0.00 0.00 0.00 5.18
2577 4373 1.568612 CTGACCGATTTGCACTGCGT 61.569 55.000 0.00 0.00 0.00 5.24
2776 4612 0.464373 GCTACTGCAAGCCATAGCCA 60.464 55.000 11.53 0.00 37.60 4.75
2777 4613 1.816961 GCTACTGCAAGCCATAGCCAT 60.817 52.381 11.53 0.00 37.60 4.40
2778 4614 2.550855 GCTACTGCAAGCCATAGCCATA 60.551 50.000 11.53 0.00 37.60 2.74
2779 4615 2.267174 ACTGCAAGCCATAGCCATAG 57.733 50.000 0.00 0.00 41.25 2.23
2780 4616 0.879765 CTGCAAGCCATAGCCATAGC 59.120 55.000 0.00 0.00 41.25 2.97
2781 4617 0.538057 TGCAAGCCATAGCCATAGCC 60.538 55.000 0.00 0.00 41.25 3.93
2782 4618 0.538057 GCAAGCCATAGCCATAGCCA 60.538 55.000 0.00 0.00 41.25 4.75
2783 4619 1.889699 GCAAGCCATAGCCATAGCCAT 60.890 52.381 0.00 0.00 41.25 4.40
2784 4620 2.618816 GCAAGCCATAGCCATAGCCATA 60.619 50.000 0.00 0.00 41.25 2.74
2785 4621 3.276857 CAAGCCATAGCCATAGCCATAG 58.723 50.000 0.00 0.00 41.25 2.23
2786 4622 1.211457 AGCCATAGCCATAGCCATAGC 59.789 52.381 0.00 0.00 41.25 2.97
2787 4623 1.748591 GCCATAGCCATAGCCATAGCC 60.749 57.143 0.00 0.00 41.25 3.93
2801 4646 0.603569 ATAGCCCTAGCAATCGGTCG 59.396 55.000 0.00 0.00 43.56 4.79
2816 4684 1.227205 GTCGATCCTCCTGCTGCTG 60.227 63.158 0.00 0.00 0.00 4.41
2824 4693 2.889503 CCTGCTGCTGCGCTCTAC 60.890 66.667 9.73 0.00 43.34 2.59
2831 4700 1.360911 GCTGCGCTCTACCTAGTCC 59.639 63.158 9.73 0.00 0.00 3.85
2833 4702 1.103803 CTGCGCTCTACCTAGTCCAA 58.896 55.000 9.73 0.00 0.00 3.53
2834 4703 1.066303 CTGCGCTCTACCTAGTCCAAG 59.934 57.143 9.73 0.00 0.00 3.61
2835 4704 1.104630 GCGCTCTACCTAGTCCAAGT 58.895 55.000 0.00 0.00 0.00 3.16
2836 4705 1.065851 GCGCTCTACCTAGTCCAAGTC 59.934 57.143 0.00 0.00 0.00 3.01
2837 4706 1.331138 CGCTCTACCTAGTCCAAGTCG 59.669 57.143 0.00 0.00 0.00 4.18
2838 4707 2.641305 GCTCTACCTAGTCCAAGTCGA 58.359 52.381 0.00 0.00 0.00 4.20
2839 4708 3.215975 GCTCTACCTAGTCCAAGTCGAT 58.784 50.000 0.00 0.00 0.00 3.59
2840 4709 3.003897 GCTCTACCTAGTCCAAGTCGATG 59.996 52.174 0.00 0.00 0.00 3.84
2841 4710 4.452825 CTCTACCTAGTCCAAGTCGATGA 58.547 47.826 0.00 0.00 0.00 2.92
2842 4711 5.050126 TCTACCTAGTCCAAGTCGATGAT 57.950 43.478 0.00 0.00 0.00 2.45
2843 4712 4.822350 TCTACCTAGTCCAAGTCGATGATG 59.178 45.833 0.00 0.00 0.00 3.07
2854 4723 2.093288 AGTCGATGATGCATGTGTTCCT 60.093 45.455 2.46 0.00 0.00 3.36
2870 4739 5.530915 TGTGTTCCTTCGTTGAATTGAATCT 59.469 36.000 0.00 0.00 0.00 2.40
2872 4741 7.015877 GTGTTCCTTCGTTGAATTGAATCTAC 58.984 38.462 0.00 0.00 0.00 2.59
2874 4743 7.117812 TGTTCCTTCGTTGAATTGAATCTACTC 59.882 37.037 0.00 0.00 0.00 2.59
2919 4794 2.988010 TCATACTGCACCAGTCCATC 57.012 50.000 0.48 0.00 41.21 3.51
2940 4815 3.198635 TCGATCCCTGAAGAAATTGCTCT 59.801 43.478 0.00 0.00 0.00 4.09
3010 4885 0.106894 GTTGATGGGGATCGAGGGAC 59.893 60.000 0.00 0.00 0.00 4.46
3011 4886 1.399744 TTGATGGGGATCGAGGGACG 61.400 60.000 0.00 0.00 44.09 4.79
3088 4963 0.918258 TCCATATTCAGTGCCTGCCA 59.082 50.000 0.00 0.00 0.00 4.92
3186 5061 2.399511 TTTGTTGCGTGGGATGCACG 62.400 55.000 0.00 0.00 40.28 5.34
3225 5100 4.023193 ACTTTGGCGTTCATTACTTTCAGG 60.023 41.667 0.00 0.00 0.00 3.86
3237 5112 8.073467 TCATTACTTTCAGGTTTTTCCTTTGT 57.927 30.769 0.00 0.00 45.67 2.83
3240 5115 6.353404 ACTTTCAGGTTTTTCCTTTGTGAA 57.647 33.333 0.00 0.00 45.67 3.18
3326 5231 1.784358 ATTACAGCCAGCCATTGCAT 58.216 45.000 0.00 0.00 41.13 3.96
3365 5270 1.271762 ACATCCAGAATGCACACAGCT 60.272 47.619 0.00 0.00 45.94 4.24
3414 5354 6.382869 AAAGACAAGTGATCAACTCCTTTG 57.617 37.500 0.00 0.00 38.56 2.77
3433 5390 1.999071 GAGCAACCGCACACAAACCA 61.999 55.000 0.00 0.00 42.27 3.67
3434 5391 1.876263 GCAACCGCACACAAACCAC 60.876 57.895 0.00 0.00 38.36 4.16
3435 5392 1.226831 CAACCGCACACAAACCACC 60.227 57.895 0.00 0.00 0.00 4.61
3436 5393 1.679305 AACCGCACACAAACCACCA 60.679 52.632 0.00 0.00 0.00 4.17
3437 5394 1.939769 AACCGCACACAAACCACCAC 61.940 55.000 0.00 0.00 0.00 4.16
3438 5395 2.024022 CGCACACAAACCACCACG 59.976 61.111 0.00 0.00 0.00 4.94
3494 5453 0.447801 CTCCAAAATCAACGCCTCCG 59.552 55.000 0.00 0.00 41.14 4.63
3539 5498 2.359900 GTCGTTGCCTGATCCAAGATT 58.640 47.619 0.00 0.00 0.00 2.40
3554 5513 7.673504 TGATCCAAGATTTTAGGTTTTCATCCA 59.326 33.333 0.00 0.00 0.00 3.41
3748 5714 6.413783 TGAGAGTTATCAAACACCTACACA 57.586 37.500 0.00 0.00 38.12 3.72
3751 5717 5.989777 AGAGTTATCAAACACCTACACACAC 59.010 40.000 0.00 0.00 38.12 3.82
3826 5799 4.319139 AATCCGATCTCAGTCACATGAG 57.681 45.455 0.00 0.00 46.70 2.90
3849 5822 5.639506 AGATTCTTCACAATTGTCTACACCG 59.360 40.000 8.48 0.00 0.00 4.94
3857 5830 7.604549 TCACAATTGTCTACACCGTAGAAATA 58.395 34.615 8.48 0.00 0.00 1.40
3879 5852 3.002791 GAGAAGCCGACATGTTTCATGA 58.997 45.455 15.25 0.00 0.00 3.07
3880 5853 2.744202 AGAAGCCGACATGTTTCATGAC 59.256 45.455 15.25 8.92 0.00 3.06
3934 5909 3.632604 TCATAGAACCTCGTAGGCTGAAG 59.367 47.826 0.00 0.00 39.63 3.02
3945 5921 1.891919 GGCTGAAGTGGACGTGCAA 60.892 57.895 12.69 0.00 0.00 4.08
3958 5934 2.599082 GACGTGCAAGACCGAATTCTAG 59.401 50.000 6.65 0.00 0.00 2.43
3964 5940 3.458189 CAAGACCGAATTCTAGCCGATT 58.542 45.455 3.52 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 1718 3.057596 TGTTTTTGATGACCGGAGATTGC 60.058 43.478 9.46 0.00 0.00 3.56
116 1793 4.597004 TGTCTACATAGTTCTCGAACCCT 58.403 43.478 6.20 0.00 42.06 4.34
542 2220 3.436704 CCTTGTGTGCTATCAAACGTCAT 59.563 43.478 0.00 0.00 33.01 3.06
601 2279 5.160607 TGTCAAATACAAGTTCCTCCGAT 57.839 39.130 0.00 0.00 34.29 4.18
776 2455 8.108364 TCCAGTAAGTCTCTACTAAACTAGCTT 58.892 37.037 0.00 0.00 33.75 3.74
793 2472 5.497474 ACAAAACAAGTGTCTCCAGTAAGT 58.503 37.500 0.00 0.00 0.00 2.24
953 2633 3.245346 TGGGACATGTGGCACCGA 61.245 61.111 16.26 0.00 0.00 4.69
963 2643 4.463891 CCAAGTTATTGAAAGCTGGGACAT 59.536 41.667 0.00 0.00 38.83 3.06
976 2656 8.506168 TCTATAAGTTCTTGCCCAAGTTATTG 57.494 34.615 7.80 6.49 39.38 1.90
978 2658 7.127339 TCCTCTATAAGTTCTTGCCCAAGTTAT 59.873 37.037 7.80 7.46 39.38 1.89
1086 2780 6.618287 TGATCTGTTTATGGGCGAATTAAG 57.382 37.500 0.00 0.00 0.00 1.85
1159 2857 2.560105 GCAAATCCAAGTTCAGCCTCTT 59.440 45.455 0.00 0.00 0.00 2.85
1166 2869 5.560724 ACTTAGCTAGCAAATCCAAGTTCA 58.439 37.500 18.83 0.00 0.00 3.18
1167 2870 7.611213 TTACTTAGCTAGCAAATCCAAGTTC 57.389 36.000 18.83 0.00 0.00 3.01
1262 2965 1.013596 GGCGGCTTTTGCTTGTTTTT 58.986 45.000 0.00 0.00 46.54 1.94
1287 2990 4.341235 CCTATGTCCGACAAGGTCTCATTA 59.659 45.833 5.07 0.00 41.99 1.90
1309 3012 3.304794 GCGTGAGATGGTAGTGTATCTCC 60.305 52.174 10.66 3.42 45.50 3.71
1328 3031 1.604278 GAAACTTCTTTGCTCCTGCGT 59.396 47.619 0.00 0.00 43.34 5.24
1333 3036 2.806244 TGCTACGAAACTTCTTTGCTCC 59.194 45.455 0.00 0.00 30.86 4.70
1336 3039 2.973879 GCTTGCTACGAAACTTCTTTGC 59.026 45.455 0.00 0.00 0.00 3.68
1366 3069 1.065701 CCTACTTCATCGACTCACGGG 59.934 57.143 0.00 0.00 42.82 5.28
1369 3072 1.534175 CGGCCTACTTCATCGACTCAC 60.534 57.143 0.00 0.00 0.00 3.51
1400 3103 1.939934 CGACAAAGCCACAAAGTCTCA 59.060 47.619 0.00 0.00 0.00 3.27
1411 3114 1.134560 AGATCTACGACCGACAAAGCC 59.865 52.381 0.00 0.00 0.00 4.35
1426 3129 2.066999 GGAGCGTGGGGGAAGATCT 61.067 63.158 0.00 0.00 0.00 2.75
1439 3142 4.864334 GTCATGGGCCTGGGAGCG 62.864 72.222 4.53 0.00 0.00 5.03
1456 3159 1.668419 GTCGGATGACAATGGGGAAG 58.332 55.000 0.00 0.00 44.82 3.46
1483 3186 1.895798 TGTGGCTTCAGGTCTACTCTG 59.104 52.381 0.00 0.00 0.00 3.35
1495 3198 2.415491 GCGGTTTTAGGAATGTGGCTTC 60.415 50.000 0.00 0.00 0.00 3.86
1566 3269 3.192422 TGTTGGTGTTGTCTTGTTCAAGG 59.808 43.478 11.82 0.00 0.00 3.61
1617 3320 3.828451 GCATTGGCACTATGGTATGGATT 59.172 43.478 1.64 0.00 40.72 3.01
1637 3340 1.723608 CCGTTGTGAGGTGCTTTGCA 61.724 55.000 0.00 0.00 35.60 4.08
1639 3342 1.531149 CTACCGTTGTGAGGTGCTTTG 59.469 52.381 0.00 0.00 42.83 2.77
1649 3352 0.527817 GCTCCGATCCTACCGTTGTG 60.528 60.000 0.00 0.00 0.00 3.33
1650 3353 0.968901 TGCTCCGATCCTACCGTTGT 60.969 55.000 0.00 0.00 0.00 3.32
1657 3360 2.602257 CACATTGTGCTCCGATCCTA 57.398 50.000 3.43 0.00 0.00 2.94
1675 3378 1.073025 AAGCATGGTTGACGAGGCA 59.927 52.632 9.83 0.00 33.87 4.75
1684 3410 3.197549 AGGTTTGTTTGTCAAGCATGGTT 59.802 39.130 3.82 3.82 38.67 3.67
1692 3418 5.888724 TCAATCTGGTAGGTTTGTTTGTCAA 59.111 36.000 0.00 0.00 0.00 3.18
1697 3423 4.798882 TGGTCAATCTGGTAGGTTTGTTT 58.201 39.130 0.00 0.00 0.00 2.83
1714 3440 4.574674 AAATGAAGTGCCTCTATGGTCA 57.425 40.909 0.00 0.00 38.35 4.02
1716 3442 4.683400 CGGTAAATGAAGTGCCTCTATGGT 60.683 45.833 0.00 0.00 38.35 3.55
1720 3446 3.512329 TGACGGTAAATGAAGTGCCTCTA 59.488 43.478 0.00 0.00 0.00 2.43
1740 3466 2.894765 TCTTTAGTGGTGGTGACGATGA 59.105 45.455 0.00 0.00 0.00 2.92
1779 3505 4.519350 GGACTAGCTTGCTTGTTAGGTTTT 59.481 41.667 10.60 0.00 0.00 2.43
1782 3508 2.907042 AGGACTAGCTTGCTTGTTAGGT 59.093 45.455 10.60 0.00 0.00 3.08
1788 3514 5.351740 GGTAGTTTTAGGACTAGCTTGCTTG 59.648 44.000 0.00 1.08 43.68 4.01
1789 3515 5.012768 TGGTAGTTTTAGGACTAGCTTGCTT 59.987 40.000 13.35 0.00 45.94 3.91
1790 3516 4.530946 TGGTAGTTTTAGGACTAGCTTGCT 59.469 41.667 13.35 0.00 45.94 3.91
1832 3558 1.302993 CCCGTTCAATGAACCCCGT 60.303 57.895 19.16 0.00 39.14 5.28
1833 3559 0.606944 TTCCCGTTCAATGAACCCCG 60.607 55.000 19.16 8.77 39.14 5.73
1837 3563 3.003480 CTCTCCTTCCCGTTCAATGAAC 58.997 50.000 15.62 15.62 38.97 3.18
1939 3668 1.603456 TGCATTGCTCCGTCTCAAAA 58.397 45.000 10.49 0.00 0.00 2.44
2073 3818 0.108585 AAAGGTGAGACACGTGGCAT 59.891 50.000 26.11 8.81 34.83 4.40
2110 3855 4.409247 TCCTTCCTTGGGTTCTCTATAAGC 59.591 45.833 0.00 0.00 0.00 3.09
2196 3942 6.071672 TGGAATGAACTTGGCGAATTAATTCA 60.072 34.615 24.23 6.50 36.61 2.57
2296 4051 6.149807 ACCAATCGAGATTACTAGCTAGCTAC 59.850 42.308 20.67 10.51 0.00 3.58
2341 4103 8.079211 TCCACTATATATGATTTGTAGGGAGC 57.921 38.462 0.00 0.00 0.00 4.70
2349 4122 6.093219 GCTGGTGCTCCACTATATATGATTTG 59.907 42.308 2.64 0.00 39.03 2.32
2353 4126 3.515502 GGCTGGTGCTCCACTATATATGA 59.484 47.826 2.64 0.00 39.03 2.15
2358 4131 1.486310 CTTGGCTGGTGCTCCACTATA 59.514 52.381 2.64 0.00 39.03 1.31
2359 4132 0.254178 CTTGGCTGGTGCTCCACTAT 59.746 55.000 2.64 0.00 39.03 2.12
2490 4286 2.477754 GCGCGTGAGGTTTTACTTACTT 59.522 45.455 8.43 0.00 0.00 2.24
2511 4307 3.373565 GAAAACAGCCAGCCGGGG 61.374 66.667 2.18 0.00 37.04 5.73
2515 4311 0.600057 CCAAGAGAAAACAGCCAGCC 59.400 55.000 0.00 0.00 0.00 4.85
2517 4313 1.538950 GCTCCAAGAGAAAACAGCCAG 59.461 52.381 0.00 0.00 0.00 4.85
2550 4346 1.377725 AAATCGGTCAGCAGGCCTG 60.378 57.895 29.34 29.34 43.17 4.85
2551 4347 1.377725 CAAATCGGTCAGCAGGCCT 60.378 57.895 0.00 0.00 0.00 5.19
2552 4348 3.056313 GCAAATCGGTCAGCAGGCC 62.056 63.158 0.00 0.00 0.00 5.19
2553 4349 2.334946 TGCAAATCGGTCAGCAGGC 61.335 57.895 0.00 0.00 32.48 4.85
2554 4350 0.957395 AGTGCAAATCGGTCAGCAGG 60.957 55.000 0.00 0.00 37.72 4.85
2555 4351 0.167470 CAGTGCAAATCGGTCAGCAG 59.833 55.000 0.00 0.00 37.72 4.24
2558 4354 1.133253 CGCAGTGCAAATCGGTCAG 59.867 57.895 16.83 0.00 0.00 3.51
2560 4356 3.253955 ACGCAGTGCAAATCGGTC 58.746 55.556 16.83 0.00 42.51 4.79
2572 4368 0.102481 ACCCTAGAATACGCACGCAG 59.898 55.000 0.00 0.00 0.00 5.18
2573 4369 0.179121 CACCCTAGAATACGCACGCA 60.179 55.000 0.00 0.00 0.00 5.24
2574 4370 0.179119 ACACCCTAGAATACGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
2575 4371 1.556564 CACACCCTAGAATACGCACG 58.443 55.000 0.00 0.00 0.00 5.34
2576 4372 1.287425 GCACACCCTAGAATACGCAC 58.713 55.000 0.00 0.00 0.00 5.34
2577 4373 0.179121 CGCACACCCTAGAATACGCA 60.179 55.000 0.00 0.00 0.00 5.24
2579 4375 1.556564 CACGCACACCCTAGAATACG 58.443 55.000 0.00 0.00 0.00 3.06
2581 4377 0.828022 CCCACGCACACCCTAGAATA 59.172 55.000 0.00 0.00 0.00 1.75
2582 4378 1.198759 ACCCACGCACACCCTAGAAT 61.199 55.000 0.00 0.00 0.00 2.40
2695 4531 2.031919 CCGTTGTAGTGGCAGGCA 59.968 61.111 0.00 0.00 0.00 4.75
2776 4612 2.169352 CGATTGCTAGGGCTATGGCTAT 59.831 50.000 0.00 0.00 39.59 2.97
2777 4613 1.550524 CGATTGCTAGGGCTATGGCTA 59.449 52.381 0.00 0.00 39.59 3.93
2778 4614 0.322975 CGATTGCTAGGGCTATGGCT 59.677 55.000 0.00 0.00 39.59 4.75
2779 4615 0.674895 CCGATTGCTAGGGCTATGGC 60.675 60.000 0.00 0.00 39.59 4.40
2780 4616 0.687354 ACCGATTGCTAGGGCTATGG 59.313 55.000 0.00 0.00 39.59 2.74
2781 4617 1.670087 CGACCGATTGCTAGGGCTATG 60.670 57.143 0.00 0.00 39.59 2.23
2782 4618 0.603569 CGACCGATTGCTAGGGCTAT 59.396 55.000 0.00 0.00 39.59 2.97
2783 4619 0.466739 TCGACCGATTGCTAGGGCTA 60.467 55.000 0.00 0.00 39.59 3.93
2784 4620 1.115930 ATCGACCGATTGCTAGGGCT 61.116 55.000 0.00 0.00 39.59 5.19
2785 4621 0.667792 GATCGACCGATTGCTAGGGC 60.668 60.000 6.36 0.00 34.60 5.19
2786 4622 0.038159 GGATCGACCGATTGCTAGGG 60.038 60.000 6.36 0.00 34.60 3.53
2787 4623 0.962489 AGGATCGACCGATTGCTAGG 59.038 55.000 6.36 0.00 44.74 3.02
2801 4646 2.588314 CGCAGCAGCAGGAGGATC 60.588 66.667 0.82 0.00 42.27 3.36
2816 4684 1.065851 GACTTGGACTAGGTAGAGCGC 59.934 57.143 0.00 0.00 0.00 5.92
2821 4689 4.557695 GCATCATCGACTTGGACTAGGTAG 60.558 50.000 0.00 0.00 0.00 3.18
2824 4693 2.101415 TGCATCATCGACTTGGACTAGG 59.899 50.000 0.00 0.00 0.00 3.02
2831 4700 3.486375 GGAACACATGCATCATCGACTTG 60.486 47.826 0.00 0.00 0.00 3.16
2833 4702 2.093288 AGGAACACATGCATCATCGACT 60.093 45.455 0.00 0.00 0.00 4.18
2834 4703 2.283298 AGGAACACATGCATCATCGAC 58.717 47.619 0.00 0.00 0.00 4.20
2835 4704 2.696989 AGGAACACATGCATCATCGA 57.303 45.000 0.00 0.00 0.00 3.59
2836 4705 2.286008 CGAAGGAACACATGCATCATCG 60.286 50.000 0.00 0.00 0.00 3.84
2837 4706 2.679837 ACGAAGGAACACATGCATCATC 59.320 45.455 0.00 0.00 0.00 2.92
2838 4707 2.715046 ACGAAGGAACACATGCATCAT 58.285 42.857 0.00 0.00 0.00 2.45
2839 4708 2.183478 ACGAAGGAACACATGCATCA 57.817 45.000 0.00 0.00 0.00 3.07
2840 4709 2.483877 TCAACGAAGGAACACATGCATC 59.516 45.455 0.00 0.00 0.00 3.91
2841 4710 2.503331 TCAACGAAGGAACACATGCAT 58.497 42.857 0.00 0.00 0.00 3.96
2842 4711 1.960417 TCAACGAAGGAACACATGCA 58.040 45.000 0.00 0.00 0.00 3.96
2843 4712 3.559238 ATTCAACGAAGGAACACATGC 57.441 42.857 0.00 0.00 0.00 4.06
2854 4723 8.038351 TGTATGGAGTAGATTCAATTCAACGAA 58.962 33.333 0.00 0.00 0.00 3.85
2870 4739 5.813513 ATCTGACATGCATGTATGGAGTA 57.186 39.130 31.45 13.41 41.95 2.59
2872 4741 7.554211 AGTATATCTGACATGCATGTATGGAG 58.446 38.462 31.45 22.35 41.95 3.86
2874 4743 7.325694 TGAGTATATCTGACATGCATGTATGG 58.674 38.462 31.45 22.17 41.95 2.74
2919 4794 3.539604 AGAGCAATTTCTTCAGGGATCG 58.460 45.455 0.00 0.00 0.00 3.69
2989 4864 1.219469 TCCCTCGATCCCCATCAACTA 59.781 52.381 0.00 0.00 0.00 2.24
3045 4920 4.503007 TCGATCTGCAGTTATTAGCGAAAC 59.497 41.667 14.67 0.00 0.00 2.78
3186 5061 4.365723 CCAAAGTAATGCATGCATTCCTC 58.634 43.478 41.17 30.96 44.50 3.71
3326 5231 6.828502 GATGTTATTGCGACATCTTGTAGA 57.171 37.500 9.35 0.00 46.19 2.59
3394 5311 4.083590 GCTCAAAGGAGTTGATCACTTGTC 60.084 45.833 0.00 0.00 45.27 3.18
3414 5354 1.299089 GGTTTGTGTGCGGTTGCTC 60.299 57.895 0.00 0.00 43.34 4.26
3419 5376 2.044848 TGGTGGTTTGTGTGCGGT 60.045 55.556 0.00 0.00 0.00 5.68
3433 5390 0.978151 TGTATTAGGTGGTGCGTGGT 59.022 50.000 0.00 0.00 0.00 4.16
3434 5391 1.735571 GTTGTATTAGGTGGTGCGTGG 59.264 52.381 0.00 0.00 0.00 4.94
3435 5392 2.158841 GTGTTGTATTAGGTGGTGCGTG 59.841 50.000 0.00 0.00 0.00 5.34
3436 5393 2.224329 TGTGTTGTATTAGGTGGTGCGT 60.224 45.455 0.00 0.00 0.00 5.24
3437 5394 2.158841 GTGTGTTGTATTAGGTGGTGCG 59.841 50.000 0.00 0.00 0.00 5.34
3438 5395 2.158841 CGTGTGTTGTATTAGGTGGTGC 59.841 50.000 0.00 0.00 0.00 5.01
3494 5453 3.604772 CGCTTGTGCACTGTTTTCTACTC 60.605 47.826 19.41 0.00 39.64 2.59
3539 5498 6.200878 ACTTCTCCTGGATGAAAACCTAAA 57.799 37.500 0.00 0.00 0.00 1.85
3554 5513 4.939052 TTTGAGAGTTCGAACTTCTCCT 57.061 40.909 31.95 25.31 39.88 3.69
3826 5799 5.408604 ACGGTGTAGACAATTGTGAAGAATC 59.591 40.000 17.58 0.00 0.00 2.52
3827 5800 5.305585 ACGGTGTAGACAATTGTGAAGAAT 58.694 37.500 17.58 0.00 0.00 2.40
3849 5822 5.593010 ACATGTCGGCTTCTCTATTTCTAC 58.407 41.667 0.00 0.00 0.00 2.59
3857 5830 2.839486 TGAAACATGTCGGCTTCTCT 57.161 45.000 0.00 0.00 0.00 3.10
3879 5852 4.084537 CGAAGCTCTATTGTTTGTTGACGT 60.085 41.667 0.00 0.00 0.00 4.34
3880 5853 4.084537 ACGAAGCTCTATTGTTTGTTGACG 60.085 41.667 0.00 0.00 0.00 4.35
3934 5909 0.949105 ATTCGGTCTTGCACGTCCAC 60.949 55.000 7.22 0.00 0.00 4.02
3945 5921 2.693591 TGAATCGGCTAGAATTCGGTCT 59.306 45.455 0.00 0.00 0.00 3.85
3964 5940 5.384063 GAGATCTTGCCGAAGATATCTGA 57.616 43.478 5.86 0.00 47.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.