Multiple sequence alignment - TraesCS2D01G575600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G575600 chr2D 100.000 4805 0 0 1 4805 639536060 639531256 0.000000e+00 8874.0
1 TraesCS2D01G575600 chr2D 100.000 2359 0 0 5119 7477 639530942 639528584 0.000000e+00 4357.0
2 TraesCS2D01G575600 chr2D 83.273 275 34 8 1274 1545 522324255 522324520 7.500000e-60 243.0
3 TraesCS2D01G575600 chr2D 82.353 272 42 1 1274 1545 522522161 522522426 1.620000e-56 231.0
4 TraesCS2D01G575600 chrUn 91.955 2374 152 20 5119 7474 28299473 28297121 0.000000e+00 3290.0
5 TraesCS2D01G575600 chrUn 91.813 2101 107 23 133 2199 28303443 28301374 0.000000e+00 2867.0
6 TraesCS2D01G575600 chrUn 91.857 1314 68 16 2368 3652 28301379 28300076 0.000000e+00 1797.0
7 TraesCS2D01G575600 chrUn 87.330 442 33 6 4364 4805 28299960 28299542 1.130000e-132 484.0
8 TraesCS2D01G575600 chrUn 83.271 269 37 5 1274 1541 377223567 377223828 2.700000e-59 241.0
9 TraesCS2D01G575600 chrUn 73.269 722 150 20 5119 5805 100240136 100240849 2.710000e-54 224.0
10 TraesCS2D01G575600 chrUn 81.092 238 17 15 100 320 28293992 28293766 1.670000e-36 165.0
11 TraesCS2D01G575600 chrUn 79.835 243 26 14 908 1133 100233940 100234176 1.000000e-33 156.0
12 TraesCS2D01G575600 chr4B 92.190 2343 143 22 5119 7451 671706583 671708895 0.000000e+00 3277.0
13 TraesCS2D01G575600 chr4B 91.667 1764 99 13 450 2199 671703067 671704796 0.000000e+00 2399.0
14 TraesCS2D01G575600 chr4B 91.705 1314 72 20 2368 3653 671704791 671706095 0.000000e+00 1788.0
15 TraesCS2D01G575600 chr4B 83.701 1313 199 11 5190 6498 671697564 671698865 0.000000e+00 1225.0
16 TraesCS2D01G575600 chr4B 92.873 449 27 4 1 449 671702465 671702908 0.000000e+00 647.0
17 TraesCS2D01G575600 chr4B 84.641 599 61 17 963 1553 671694329 671694904 1.090000e-157 568.0
18 TraesCS2D01G575600 chr4B 80.780 718 90 30 2797 3490 671695860 671696553 1.110000e-142 518.0
19 TraesCS2D01G575600 chr4B 91.260 389 14 5 84 470 671693635 671694005 5.170000e-141 512.0
20 TraesCS2D01G575600 chr4B 90.379 343 29 3 4464 4805 671706172 671706511 1.480000e-121 448.0
21 TraesCS2D01G575600 chr4B 96.000 100 4 0 751 850 671694085 671694184 6.000000e-36 163.0
22 TraesCS2D01G575600 chr4B 89.524 105 11 0 1023 1127 671776103 671775999 4.710000e-27 134.0
23 TraesCS2D01G575600 chr4B 91.489 94 4 2 505 594 671693995 671694088 7.880000e-25 126.0
24 TraesCS2D01G575600 chr5A 83.153 926 89 32 677 1555 659342650 659341745 0.000000e+00 784.0
25 TraesCS2D01G575600 chr5A 83.261 687 70 24 2828 3489 659341330 659340664 2.320000e-164 590.0
26 TraesCS2D01G575600 chr5A 83.236 686 71 25 2828 3489 709194216 709194881 2.320000e-164 590.0
27 TraesCS2D01G575600 chr5A 80.552 833 87 41 784 1555 709192980 709193798 8.420000e-159 571.0
28 TraesCS2D01G575600 chr5A 89.602 452 29 8 247 693 709192160 709192598 6.550000e-155 558.0
29 TraesCS2D01G575600 chr5A 83.359 655 46 14 77 696 659343308 659342682 1.420000e-151 547.0
30 TraesCS2D01G575600 chr5A 84.463 354 47 6 4007 4357 585436266 585435918 7.180000e-90 342.0
31 TraesCS2D01G575600 chr5A 91.414 198 15 2 3706 3903 32986653 32986848 3.440000e-68 270.0
32 TraesCS2D01G575600 chr5A 91.129 124 4 1 677 800 709192621 709192737 2.160000e-35 161.0
33 TraesCS2D01G575600 chr5A 91.262 103 6 3 98 197 709211996 709212098 3.640000e-28 137.0
34 TraesCS2D01G575600 chr5A 93.258 89 5 1 1 88 659344282 659344194 6.090000e-26 130.0
35 TraesCS2D01G575600 chr5A 93.258 89 5 1 1 88 709191458 709191546 6.090000e-26 130.0
36 TraesCS2D01G575600 chr7B 83.731 670 64 17 3706 4351 632702926 632702278 6.460000e-165 592.0
37 TraesCS2D01G575600 chr1D 83.599 628 81 12 3706 4320 478176283 478175665 3.030000e-158 569.0
38 TraesCS2D01G575600 chr1D 85.674 356 51 0 4004 4359 405001263 405001618 7.080000e-100 375.0
39 TraesCS2D01G575600 chr1D 84.561 285 42 2 4077 4360 21449500 21449217 1.590000e-71 281.0
40 TraesCS2D01G575600 chr1D 91.371 197 16 1 3706 3902 40933688 40933493 1.240000e-67 268.0
41 TraesCS2D01G575600 chr1D 94.545 165 9 0 2202 2366 193502590 193502754 9.630000e-64 255.0
42 TraesCS2D01G575600 chr3D 87.955 357 39 4 4004 4359 100555519 100555166 1.160000e-112 418.0
43 TraesCS2D01G575600 chr3D 80.713 477 58 10 3909 4358 564978243 564978712 2.580000e-89 340.0
44 TraesCS2D01G575600 chr3D 85.159 283 41 1 4077 4358 558269407 558269125 9.490000e-74 289.0
45 TraesCS2D01G575600 chr3D 83.721 301 46 3 4059 4357 557630823 557631122 1.590000e-71 281.0
46 TraesCS2D01G575600 chr3D 92.147 191 15 0 3703 3893 564978001 564978191 3.440000e-68 270.0
47 TraesCS2D01G575600 chr3D 95.679 162 7 0 2202 2363 39366257 39366418 2.070000e-65 261.0
48 TraesCS2D01G575600 chr3D 80.124 161 18 9 4366 4525 565457030 565456883 2.850000e-19 108.0
49 TraesCS2D01G575600 chr2B 85.912 362 44 6 3999 4357 800520930 800521287 5.480000e-101 379.0
50 TraesCS2D01G575600 chr2B 83.271 269 37 5 1274 1541 615353012 615353273 2.700000e-59 241.0
51 TraesCS2D01G575600 chr2B 82.203 118 18 3 1735 1852 25690978 25690864 1.720000e-16 99.0
52 TraesCS2D01G575600 chr7D 81.878 458 58 10 3909 4344 270738203 270737749 5.510000e-96 363.0
53 TraesCS2D01G575600 chr7D 96.296 162 6 0 2205 2366 464028781 464028942 4.450000e-67 267.0
54 TraesCS2D01G575600 chr7D 95.062 162 8 0 2206 2367 106001105 106001266 9.630000e-64 255.0
55 TraesCS2D01G575600 chr7D 76.619 278 45 17 3909 4175 114433640 114433372 1.310000e-27 135.0
56 TraesCS2D01G575600 chr7A 80.167 479 63 13 3909 4358 13095427 13094952 5.590000e-86 329.0
57 TraesCS2D01G575600 chr7A 88.732 213 20 4 3690 3901 107014924 107015133 2.680000e-64 257.0
58 TraesCS2D01G575600 chr7A 94.545 165 9 0 2202 2366 628830839 628831003 9.630000e-64 255.0
59 TraesCS2D01G575600 chr7A 93.478 46 2 1 4042 4087 36492505 36492461 4.840000e-07 67.6
60 TraesCS2D01G575600 chr3A 80.124 483 54 20 3909 4358 730805656 730806129 9.360000e-84 322.0
61 TraesCS2D01G575600 chr3A 91.795 195 15 1 3708 3902 17033261 17033454 3.440000e-68 270.0
62 TraesCS2D01G575600 chr3B 82.535 355 40 8 4005 4359 613569346 613569678 7.340000e-75 292.0
63 TraesCS2D01G575600 chr3B 94.828 174 8 1 2208 2381 177086520 177086348 3.440000e-68 270.0
64 TraesCS2D01G575600 chr3B 82.979 94 11 5 1772 1865 489360133 489360045 6.220000e-11 80.5
65 TraesCS2D01G575600 chr5B 96.450 169 5 1 2198 2366 93221579 93221412 2.050000e-70 278.0
66 TraesCS2D01G575600 chr1B 82.951 305 51 1 4054 4357 598268470 598268774 2.660000e-69 274.0
67 TraesCS2D01G575600 chr4A 91.371 197 16 1 3706 3902 425885578 425885773 1.240000e-67 268.0
68 TraesCS2D01G575600 chr4A 90.547 201 18 1 3705 3904 577749194 577749394 1.600000e-66 265.0
69 TraesCS2D01G575600 chr4A 91.011 89 8 0 3909 3997 425885973 425886061 3.660000e-23 121.0
70 TraesCS2D01G575600 chr2A 95.758 165 7 0 2202 2366 11897717 11897881 4.450000e-67 267.0
71 TraesCS2D01G575600 chr2A 83.516 273 37 5 1275 1546 667011297 667011562 1.610000e-61 248.0
72 TraesCS2D01G575600 chr2A 83.088 272 38 3 1275 1545 667647409 667647673 2.700000e-59 241.0
73 TraesCS2D01G575600 chr6A 95.062 162 8 0 2205 2366 15552852 15552691 9.630000e-64 255.0
74 TraesCS2D01G575600 chr1A 83.784 185 17 2 3909 4081 16028416 16028599 6.000000e-36 163.0
75 TraesCS2D01G575600 chr4D 84.058 138 19 2 985 1122 490888638 490888772 6.090000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G575600 chr2D 639528584 639536060 7476 True 6615.50 8874 100.000000 1 7477 2 chr2D.!!$R1 7476
1 TraesCS2D01G575600 chrUn 28293766 28303443 9677 True 1720.60 3290 88.809400 100 7474 5 chrUn.!!$R1 7374
2 TraesCS2D01G575600 chrUn 100240136 100240849 713 False 224.00 224 73.269000 5119 5805 1 chrUn.!!$F2 686
3 TraesCS2D01G575600 chr4B 671693635 671708895 15260 False 1061.00 3277 89.698636 1 7451 11 chr4B.!!$F1 7450
4 TraesCS2D01G575600 chr5A 659340664 659344282 3618 True 512.75 784 85.757750 1 3489 4 chr5A.!!$R2 3488
5 TraesCS2D01G575600 chr5A 709191458 709194881 3423 False 402.00 590 87.555400 1 3489 5 chr5A.!!$F3 3488
6 TraesCS2D01G575600 chr7B 632702278 632702926 648 True 592.00 592 83.731000 3706 4351 1 chr7B.!!$R1 645
7 TraesCS2D01G575600 chr1D 478175665 478176283 618 True 569.00 569 83.599000 3706 4320 1 chr1D.!!$R3 614
8 TraesCS2D01G575600 chr3D 564978001 564978712 711 False 305.00 340 86.430000 3703 4358 2 chr3D.!!$F3 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 1569 0.179051 TACGGGTTTTTCACTGGCGT 60.179 50.0 0.0 0.0 0.00 5.68 F
2235 12916 0.326713 GCTCCCTCTTACCCCCTCTT 60.327 60.0 0.0 0.0 0.00 2.85 F
2354 13035 0.044855 AGGGGTAAGAGGGAGCATGT 59.955 55.0 0.0 0.0 0.00 3.21 F
3231 13955 0.394352 ATCGGATTTGGTGAGGGCAC 60.394 55.0 0.0 0.0 44.39 5.01 F
4264 15113 0.466555 AAAAACTAGCCCCGCACACA 60.467 50.0 0.0 0.0 0.00 3.72 F
4359 15208 0.609131 CCCCGTTGCCATCTTGAGTT 60.609 55.0 0.0 0.0 0.00 3.01 F
5357 16215 0.033991 TCTCTGAGCTAGGCGAGGTT 60.034 55.0 0.0 0.0 35.50 3.50 F
5635 16493 0.107456 GACATGGATGTGCGGGATCT 59.893 55.0 0.0 0.0 41.95 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2335 13016 0.044855 ACATGCTCCCTCTTACCCCT 59.955 55.0 0.00 0.0 0.00 4.79 R
3324 14048 0.039888 GTTTGCGTGCACCCGTTAAT 60.040 50.0 12.15 0.0 0.00 1.40 R
4338 15187 0.322456 CTCAAGATGGCAACGGGGAA 60.322 55.0 0.00 0.0 42.51 3.97 R
4537 15386 0.813610 CACCACTCCGTTGTTCAGCA 60.814 55.0 0.00 0.0 0.00 4.41 R
5267 16125 0.035820 CCTCCCCGTTTCCGATTTCA 60.036 55.0 0.00 0.0 35.63 2.69 R
5740 16622 0.539051 CTCATTGAGCTTCTCCCGGT 59.461 55.0 0.00 0.0 0.00 5.28 R
6409 17292 0.392998 CATCCCAGGTGCCACAGTAC 60.393 60.0 0.00 0.0 0.00 2.73 R
7454 18389 0.324943 ACGTACATTGCAGGAAGGCT 59.675 50.0 0.00 0.0 34.04 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 995 2.360726 CAGCTCCTGTGCATGGCA 60.361 61.111 0.00 0.00 35.60 4.92
115 1014 0.321653 AATTCTCACCTGGTGGCGTC 60.322 55.000 25.67 0.00 36.63 5.19
149 1056 2.114638 TGTTGTTGACAGCAAGGCC 58.885 52.632 4.82 0.00 34.15 5.19
219 1132 1.226974 CTAGCCGACGGTGGTGATG 60.227 63.158 16.73 0.00 0.00 3.07
220 1133 3.365291 TAGCCGACGGTGGTGATGC 62.365 63.158 16.73 0.00 0.00 3.91
337 1250 2.889678 TGCAAATGTGTTGCTGATACCA 59.110 40.909 11.91 0.00 45.13 3.25
372 1285 6.805713 AGTTTTCATCTTTGATTTCCGTTGT 58.194 32.000 0.00 0.00 0.00 3.32
442 1362 2.490509 CTCCATGCTGTGCTGAAATCAA 59.509 45.455 0.00 0.00 0.00 2.57
448 1368 3.191162 TGCTGTGCTGAAATCAATGGTAC 59.809 43.478 0.00 0.00 0.00 3.34
485 1405 5.101648 TCACATGCATGATTGAGGACTTA 57.898 39.130 32.75 1.38 0.00 2.24
488 1408 4.825634 ACATGCATGATTGAGGACTTATGG 59.174 41.667 32.75 0.18 0.00 2.74
490 1410 4.711399 TGCATGATTGAGGACTTATGGAG 58.289 43.478 0.00 0.00 0.00 3.86
498 1418 3.764434 TGAGGACTTATGGAGTGTGTCTC 59.236 47.826 0.00 0.00 39.19 3.36
499 1419 4.020543 GAGGACTTATGGAGTGTGTCTCT 58.979 47.826 0.00 0.00 42.40 3.10
501 1421 3.516615 GACTTATGGAGTGTGTCTCTGC 58.483 50.000 0.00 0.00 42.40 4.26
502 1422 2.899900 ACTTATGGAGTGTGTCTCTGCA 59.100 45.455 0.00 0.00 42.40 4.41
553 1481 4.820173 AGAGACAAAGGGGAAAAGTTTACG 59.180 41.667 0.00 0.00 0.00 3.18
573 1501 2.679837 CGATGCAAACAAGAGGTGCTAT 59.320 45.455 0.00 0.00 39.09 2.97
574 1502 3.871006 CGATGCAAACAAGAGGTGCTATA 59.129 43.478 0.00 0.00 39.09 1.31
596 1540 1.774254 CTGGGGCTAATATGGACCACA 59.226 52.381 0.00 0.00 33.63 4.17
599 1543 1.542547 GGGCTAATATGGACCACACCG 60.543 57.143 0.00 0.00 0.00 4.94
615 1559 4.052519 CGTGTGGCTACGGGTTTT 57.947 55.556 6.92 0.00 40.22 2.43
622 1566 0.879090 GGCTACGGGTTTTTCACTGG 59.121 55.000 0.00 0.00 0.00 4.00
625 1569 0.179051 TACGGGTTTTTCACTGGCGT 60.179 50.000 0.00 0.00 0.00 5.68
895 2170 4.066646 TGCACACAGCTCAAGTAAGTAA 57.933 40.909 0.00 0.00 45.94 2.24
919 2262 4.082733 GGTCTAACCAGATTTGTTTGCTCC 60.083 45.833 0.00 0.00 38.42 4.70
949 2293 3.643792 AGCTTCACCTTGTGAGTAACTCT 59.356 43.478 0.00 0.00 43.69 3.24
988 2335 5.635700 GCATATGTAGGAAACAGCTAGCTAC 59.364 44.000 18.86 10.78 42.70 3.58
1193 11823 7.099764 ACTACATTCATGTATACATAGCTGGC 58.900 38.462 17.86 0.00 41.92 4.85
1235 11868 6.959671 TGAAGCAAAATTCGAAAAGTTTGT 57.040 29.167 22.63 11.65 46.74 2.83
1236 11869 8.467402 TTGAAGCAAAATTCGAAAAGTTTGTA 57.533 26.923 22.63 11.61 46.74 2.41
1339 11972 5.606348 AAGACGAGGAAGATCATAAGCTT 57.394 39.130 3.48 3.48 32.71 3.74
1502 12135 1.542915 GAAGCCGAGTGGTACTACACA 59.457 52.381 12.29 0.00 43.72 3.72
1574 12243 5.718649 ACTATACGCATTCACACACAATC 57.281 39.130 0.00 0.00 0.00 2.67
1585 12254 5.562506 TCACACACAATCAACCGTAAAAA 57.437 34.783 0.00 0.00 0.00 1.94
1603 12272 7.149192 CCGTAAAAACAGAAAAGATAGCAAACG 60.149 37.037 0.00 0.00 0.00 3.60
1614 12283 7.923414 AAAGATAGCAAACGGAATCTAAACT 57.077 32.000 0.00 0.00 0.00 2.66
1743 12413 4.674101 GCTCAAACAGTGCACACAAGTTTA 60.674 41.667 21.04 11.07 38.68 2.01
1810 12480 5.359194 TTTGGCCACCAAATTTTACAAGA 57.641 34.783 3.88 0.00 46.92 3.02
1843 12513 9.941325 AAACATTTGATCATAATTAAAGCCACA 57.059 25.926 0.00 0.00 0.00 4.17
1845 12515 9.590451 ACATTTGATCATAATTAAAGCCACAAG 57.410 29.630 0.00 0.00 0.00 3.16
1854 12524 6.478512 AATTAAAGCCACAAGGTTTCAGAA 57.521 33.333 0.00 0.00 44.85 3.02
1930 12604 3.064931 CACCCGAGTGTAGAAAAACCTC 58.935 50.000 0.00 0.00 39.30 3.85
1931 12605 2.701951 ACCCGAGTGTAGAAAAACCTCA 59.298 45.455 0.00 0.00 0.00 3.86
1932 12606 3.064931 CCCGAGTGTAGAAAAACCTCAC 58.935 50.000 0.00 0.00 0.00 3.51
1933 12607 3.493699 CCCGAGTGTAGAAAAACCTCACA 60.494 47.826 0.00 0.00 0.00 3.58
1934 12608 4.124238 CCGAGTGTAGAAAAACCTCACAA 58.876 43.478 0.00 0.00 0.00 3.33
1935 12609 4.573201 CCGAGTGTAGAAAAACCTCACAAA 59.427 41.667 0.00 0.00 0.00 2.83
1936 12610 5.277345 CCGAGTGTAGAAAAACCTCACAAAG 60.277 44.000 0.00 0.00 0.00 2.77
1937 12611 5.293569 CGAGTGTAGAAAAACCTCACAAAGT 59.706 40.000 0.00 0.00 0.00 2.66
1938 12612 6.183360 CGAGTGTAGAAAAACCTCACAAAGTT 60.183 38.462 0.00 0.00 0.00 2.66
1939 12613 7.462571 AGTGTAGAAAAACCTCACAAAGTTT 57.537 32.000 0.00 0.00 37.80 2.66
1940 12614 7.892609 AGTGTAGAAAAACCTCACAAAGTTTT 58.107 30.769 0.00 0.00 45.57 2.43
1947 12621 6.844097 AAACCTCACAAAGTTTTTCTACCA 57.156 33.333 0.00 0.00 32.36 3.25
1948 12622 7.418337 AAACCTCACAAAGTTTTTCTACCAT 57.582 32.000 0.00 0.00 32.36 3.55
1971 12645 3.244457 ACGCCCAAGCTAGTTTAACTCTT 60.244 43.478 0.00 0.00 36.60 2.85
2000 12674 9.429109 TTCGGATAAAGGGTGATATATATAGCA 57.571 33.333 6.59 6.59 0.00 3.49
2082 12756 5.382618 AACACTACGGTACACTCTTAAGG 57.617 43.478 1.85 0.00 0.00 2.69
2090 12767 4.935808 CGGTACACTCTTAAGGCAAAAGAT 59.064 41.667 1.85 0.00 32.72 2.40
2106 12783 7.439056 AGGCAAAAGATAAACATGACAAAACTG 59.561 33.333 0.00 0.00 0.00 3.16
2129 12806 6.350103 TGCATAAAAACACGGTGATAGGATA 58.650 36.000 16.29 0.90 0.00 2.59
2172 12853 3.322230 TTTCGACGCACCTAAAACAAC 57.678 42.857 0.00 0.00 0.00 3.32
2196 12877 4.045783 AGAAAAACCGGCAAAACATTACG 58.954 39.130 0.00 0.00 0.00 3.18
2197 12878 3.439895 AAAACCGGCAAAACATTACGT 57.560 38.095 0.00 0.00 0.00 3.57
2198 12879 4.564940 AAAACCGGCAAAACATTACGTA 57.435 36.364 0.00 0.00 0.00 3.57
2199 12880 3.541071 AACCGGCAAAACATTACGTAC 57.459 42.857 0.00 0.00 0.00 3.67
2200 12881 1.460359 ACCGGCAAAACATTACGTACG 59.540 47.619 15.01 15.01 0.00 3.67
2201 12882 1.201943 CCGGCAAAACATTACGTACGG 60.202 52.381 21.06 3.79 0.00 4.02
2202 12883 1.725706 CGGCAAAACATTACGTACGGA 59.274 47.619 21.06 8.59 0.00 4.69
2203 12884 2.157279 CGGCAAAACATTACGTACGGAA 59.843 45.455 16.64 16.64 0.00 4.30
2204 12885 3.481839 GGCAAAACATTACGTACGGAAC 58.518 45.455 16.66 0.15 0.00 3.62
2205 12886 3.059051 GGCAAAACATTACGTACGGAACA 60.059 43.478 16.66 0.00 0.00 3.18
2206 12887 4.145997 GCAAAACATTACGTACGGAACAG 58.854 43.478 16.66 13.73 0.00 3.16
2207 12888 4.318974 GCAAAACATTACGTACGGAACAGT 60.319 41.667 16.66 14.42 0.00 3.55
2208 12889 5.740406 CAAAACATTACGTACGGAACAGTT 58.260 37.500 16.66 19.38 0.00 3.16
2209 12890 5.989551 AAACATTACGTACGGAACAGTTT 57.010 34.783 27.14 27.14 30.00 2.66
2210 12891 5.989551 AACATTACGTACGGAACAGTTTT 57.010 34.783 16.66 0.66 0.00 2.43
2211 12892 7.475771 AAACATTACGTACGGAACAGTTTTA 57.524 32.000 27.14 3.68 30.40 1.52
2212 12893 6.695292 ACATTACGTACGGAACAGTTTTAG 57.305 37.500 16.66 1.12 0.00 1.85
2213 12894 5.119125 ACATTACGTACGGAACAGTTTTAGC 59.881 40.000 16.66 0.00 0.00 3.09
2214 12895 3.096489 ACGTACGGAACAGTTTTAGCA 57.904 42.857 21.06 0.00 0.00 3.49
2215 12896 3.656559 ACGTACGGAACAGTTTTAGCAT 58.343 40.909 21.06 0.00 0.00 3.79
2216 12897 3.430895 ACGTACGGAACAGTTTTAGCATG 59.569 43.478 21.06 0.00 0.00 4.06
2217 12898 2.989422 ACGGAACAGTTTTAGCATGC 57.011 45.000 10.51 10.51 0.00 4.06
2218 12899 2.504367 ACGGAACAGTTTTAGCATGCT 58.496 42.857 25.99 25.99 0.00 3.79
2219 12900 2.484264 ACGGAACAGTTTTAGCATGCTC 59.516 45.455 26.57 10.05 0.00 4.26
2220 12901 2.159517 CGGAACAGTTTTAGCATGCTCC 60.160 50.000 26.57 14.91 0.00 4.70
2221 12902 2.164422 GGAACAGTTTTAGCATGCTCCC 59.836 50.000 26.57 10.50 0.00 4.30
2222 12903 2.887151 ACAGTTTTAGCATGCTCCCT 57.113 45.000 26.57 12.72 0.00 4.20
2223 12904 2.716217 ACAGTTTTAGCATGCTCCCTC 58.284 47.619 26.57 13.56 0.00 4.30
2224 12905 2.307098 ACAGTTTTAGCATGCTCCCTCT 59.693 45.455 26.57 15.62 0.00 3.69
2225 12906 3.245052 ACAGTTTTAGCATGCTCCCTCTT 60.245 43.478 26.57 4.00 0.00 2.85
2226 12907 4.019321 ACAGTTTTAGCATGCTCCCTCTTA 60.019 41.667 26.57 0.65 0.00 2.10
2227 12908 4.333926 CAGTTTTAGCATGCTCCCTCTTAC 59.666 45.833 26.57 13.24 0.00 2.34
2228 12909 3.560636 TTTAGCATGCTCCCTCTTACC 57.439 47.619 26.57 0.00 0.00 2.85
2229 12910 1.424638 TAGCATGCTCCCTCTTACCC 58.575 55.000 26.57 0.00 0.00 3.69
2230 12911 1.149401 GCATGCTCCCTCTTACCCC 59.851 63.158 11.37 0.00 0.00 4.95
2231 12912 1.839894 CATGCTCCCTCTTACCCCC 59.160 63.158 0.00 0.00 0.00 5.40
2232 12913 0.695803 CATGCTCCCTCTTACCCCCT 60.696 60.000 0.00 0.00 0.00 4.79
2233 12914 0.400670 ATGCTCCCTCTTACCCCCTC 60.401 60.000 0.00 0.00 0.00 4.30
2234 12915 1.315216 GCTCCCTCTTACCCCCTCT 59.685 63.158 0.00 0.00 0.00 3.69
2235 12916 0.326713 GCTCCCTCTTACCCCCTCTT 60.327 60.000 0.00 0.00 0.00 2.85
2236 12917 1.906692 GCTCCCTCTTACCCCCTCTTT 60.907 57.143 0.00 0.00 0.00 2.52
2237 12918 2.563406 CTCCCTCTTACCCCCTCTTTT 58.437 52.381 0.00 0.00 0.00 2.27
2238 12919 2.506231 CTCCCTCTTACCCCCTCTTTTC 59.494 54.545 0.00 0.00 0.00 2.29
2239 12920 2.157911 TCCCTCTTACCCCCTCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
2240 12921 2.026169 CCCTCTTACCCCCTCTTTTCAC 60.026 54.545 0.00 0.00 0.00 3.18
2241 12922 2.642807 CCTCTTACCCCCTCTTTTCACA 59.357 50.000 0.00 0.00 0.00 3.58
2242 12923 3.267031 CCTCTTACCCCCTCTTTTCACAT 59.733 47.826 0.00 0.00 0.00 3.21
2243 12924 4.265073 CTCTTACCCCCTCTTTTCACATG 58.735 47.826 0.00 0.00 0.00 3.21
2244 12925 3.913799 TCTTACCCCCTCTTTTCACATGA 59.086 43.478 0.00 0.00 0.00 3.07
2245 12926 2.887151 ACCCCCTCTTTTCACATGAG 57.113 50.000 0.00 0.00 0.00 2.90
2246 12927 2.348472 ACCCCCTCTTTTCACATGAGA 58.652 47.619 0.00 0.00 0.00 3.27
2247 12928 2.307098 ACCCCCTCTTTTCACATGAGAG 59.693 50.000 0.00 0.00 37.30 3.20
2255 12936 6.672266 TCTTTTCACATGAGAGGTAAGAGT 57.328 37.500 0.00 0.00 0.00 3.24
2256 12937 7.776618 TCTTTTCACATGAGAGGTAAGAGTA 57.223 36.000 0.00 0.00 0.00 2.59
2257 12938 8.367660 TCTTTTCACATGAGAGGTAAGAGTAT 57.632 34.615 0.00 0.00 0.00 2.12
2258 12939 9.475620 TCTTTTCACATGAGAGGTAAGAGTATA 57.524 33.333 0.00 0.00 0.00 1.47
2283 12964 6.596309 AATAGATATGAGCCGTTGATCTCA 57.404 37.500 0.00 0.00 42.72 3.27
2285 12966 5.480642 AGATATGAGCCGTTGATCTCATT 57.519 39.130 9.61 0.07 44.96 2.57
2286 12967 6.596309 AGATATGAGCCGTTGATCTCATTA 57.404 37.500 9.61 0.00 44.96 1.90
2287 12968 6.997655 AGATATGAGCCGTTGATCTCATTAA 58.002 36.000 9.61 0.00 44.96 1.40
2288 12969 7.619050 AGATATGAGCCGTTGATCTCATTAAT 58.381 34.615 9.61 0.00 44.96 1.40
2289 12970 8.099537 AGATATGAGCCGTTGATCTCATTAATT 58.900 33.333 9.61 0.00 44.96 1.40
2290 12971 9.371136 GATATGAGCCGTTGATCTCATTAATTA 57.629 33.333 9.61 0.00 44.96 1.40
2291 12972 7.664082 ATGAGCCGTTGATCTCATTAATTAG 57.336 36.000 0.00 0.00 44.96 1.73
2292 12973 6.582636 TGAGCCGTTGATCTCATTAATTAGT 58.417 36.000 0.00 0.00 34.69 2.24
2293 12974 6.479990 TGAGCCGTTGATCTCATTAATTAGTG 59.520 38.462 1.66 1.66 34.69 2.74
2294 12975 5.760253 AGCCGTTGATCTCATTAATTAGTGG 59.240 40.000 7.99 0.34 0.00 4.00
2295 12976 5.527582 GCCGTTGATCTCATTAATTAGTGGT 59.472 40.000 7.99 0.00 0.00 4.16
2296 12977 6.292919 GCCGTTGATCTCATTAATTAGTGGTC 60.293 42.308 7.99 5.44 0.00 4.02
2297 12978 6.986817 CCGTTGATCTCATTAATTAGTGGTCT 59.013 38.462 7.99 0.00 0.00 3.85
2298 12979 7.042456 CCGTTGATCTCATTAATTAGTGGTCTG 60.042 40.741 7.99 0.00 0.00 3.51
2299 12980 7.706607 CGTTGATCTCATTAATTAGTGGTCTGA 59.293 37.037 7.99 3.29 0.00 3.27
2300 12981 9.553064 GTTGATCTCATTAATTAGTGGTCTGAT 57.447 33.333 7.99 7.08 0.00 2.90
2312 12993 8.611051 ATTAGTGGTCTGATTAACTCTTACCT 57.389 34.615 0.00 0.00 33.18 3.08
2313 12994 6.936968 AGTGGTCTGATTAACTCTTACCTT 57.063 37.500 0.00 0.00 33.18 3.50
2314 12995 6.937392 AGTGGTCTGATTAACTCTTACCTTC 58.063 40.000 0.00 0.00 33.18 3.46
2315 12996 6.726764 AGTGGTCTGATTAACTCTTACCTTCT 59.273 38.462 0.00 0.00 33.18 2.85
2316 12997 7.235812 AGTGGTCTGATTAACTCTTACCTTCTT 59.764 37.037 0.00 0.00 33.18 2.52
2317 12998 8.529476 GTGGTCTGATTAACTCTTACCTTCTTA 58.471 37.037 0.00 0.00 33.18 2.10
2318 12999 8.529476 TGGTCTGATTAACTCTTACCTTCTTAC 58.471 37.037 0.00 0.00 33.18 2.34
2319 13000 7.980662 GGTCTGATTAACTCTTACCTTCTTACC 59.019 40.741 0.00 0.00 0.00 2.85
2320 13001 8.751242 GTCTGATTAACTCTTACCTTCTTACCT 58.249 37.037 0.00 0.00 0.00 3.08
2321 13002 8.968969 TCTGATTAACTCTTACCTTCTTACCTC 58.031 37.037 0.00 0.00 0.00 3.85
2322 13003 8.660295 TGATTAACTCTTACCTTCTTACCTCA 57.340 34.615 0.00 0.00 0.00 3.86
2323 13004 8.529476 TGATTAACTCTTACCTTCTTACCTCAC 58.471 37.037 0.00 0.00 0.00 3.51
2324 13005 7.844493 TTAACTCTTACCTTCTTACCTCACA 57.156 36.000 0.00 0.00 0.00 3.58
2325 13006 6.936968 AACTCTTACCTTCTTACCTCACAT 57.063 37.500 0.00 0.00 0.00 3.21
2326 13007 6.287589 ACTCTTACCTTCTTACCTCACATG 57.712 41.667 0.00 0.00 0.00 3.21
2327 13008 5.780793 ACTCTTACCTTCTTACCTCACATGT 59.219 40.000 0.00 0.00 0.00 3.21
2328 13009 6.952358 ACTCTTACCTTCTTACCTCACATGTA 59.048 38.462 0.00 0.00 0.00 2.29
2329 13010 7.453752 ACTCTTACCTTCTTACCTCACATGTAA 59.546 37.037 0.00 0.00 0.00 2.41
2330 13011 8.197592 TCTTACCTTCTTACCTCACATGTAAA 57.802 34.615 0.00 0.00 0.00 2.01
2331 13012 8.653191 TCTTACCTTCTTACCTCACATGTAAAA 58.347 33.333 0.00 0.00 0.00 1.52
2332 13013 9.280174 CTTACCTTCTTACCTCACATGTAAAAA 57.720 33.333 0.00 0.00 0.00 1.94
2333 13014 7.745620 ACCTTCTTACCTCACATGTAAAAAG 57.254 36.000 0.00 0.00 29.88 2.27
2334 13015 7.514721 ACCTTCTTACCTCACATGTAAAAAGA 58.485 34.615 0.00 1.33 31.07 2.52
2335 13016 7.996644 ACCTTCTTACCTCACATGTAAAAAGAA 59.003 33.333 0.00 8.99 31.07 2.52
2336 13017 8.507249 CCTTCTTACCTCACATGTAAAAAGAAG 58.493 37.037 24.24 24.24 31.07 2.85
2337 13018 7.979444 TCTTACCTCACATGTAAAAAGAAGG 57.021 36.000 0.00 0.00 0.00 3.46
2338 13019 6.940298 TCTTACCTCACATGTAAAAAGAAGGG 59.060 38.462 0.00 0.00 0.00 3.95
2339 13020 4.407365 ACCTCACATGTAAAAAGAAGGGG 58.593 43.478 0.00 0.00 0.00 4.79
2340 13021 4.141018 ACCTCACATGTAAAAAGAAGGGGT 60.141 41.667 0.00 0.00 0.00 4.95
2341 13022 5.073965 ACCTCACATGTAAAAAGAAGGGGTA 59.926 40.000 0.00 0.00 0.00 3.69
2342 13023 6.007703 CCTCACATGTAAAAAGAAGGGGTAA 58.992 40.000 0.00 0.00 0.00 2.85
2343 13024 6.151144 CCTCACATGTAAAAAGAAGGGGTAAG 59.849 42.308 0.00 0.00 0.00 2.34
2344 13025 6.843752 TCACATGTAAAAAGAAGGGGTAAGA 58.156 36.000 0.00 0.00 0.00 2.10
2345 13026 6.940298 TCACATGTAAAAAGAAGGGGTAAGAG 59.060 38.462 0.00 0.00 0.00 2.85
2346 13027 6.151144 CACATGTAAAAAGAAGGGGTAAGAGG 59.849 42.308 0.00 0.00 0.00 3.69
2347 13028 5.251182 TGTAAAAAGAAGGGGTAAGAGGG 57.749 43.478 0.00 0.00 0.00 4.30
2348 13029 4.915194 TGTAAAAAGAAGGGGTAAGAGGGA 59.085 41.667 0.00 0.00 0.00 4.20
2349 13030 4.659529 AAAAAGAAGGGGTAAGAGGGAG 57.340 45.455 0.00 0.00 0.00 4.30
2350 13031 1.585895 AAGAAGGGGTAAGAGGGAGC 58.414 55.000 0.00 0.00 0.00 4.70
2351 13032 0.417841 AGAAGGGGTAAGAGGGAGCA 59.582 55.000 0.00 0.00 0.00 4.26
2352 13033 1.010170 AGAAGGGGTAAGAGGGAGCAT 59.990 52.381 0.00 0.00 0.00 3.79
2353 13034 1.141858 GAAGGGGTAAGAGGGAGCATG 59.858 57.143 0.00 0.00 0.00 4.06
2354 13035 0.044855 AGGGGTAAGAGGGAGCATGT 59.955 55.000 0.00 0.00 0.00 3.21
2355 13036 0.919710 GGGGTAAGAGGGAGCATGTT 59.080 55.000 0.00 0.00 0.00 2.71
2356 13037 2.124411 GGGGTAAGAGGGAGCATGTTA 58.876 52.381 0.00 0.00 0.00 2.41
2357 13038 2.508300 GGGGTAAGAGGGAGCATGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
2358 13039 3.053917 GGGGTAAGAGGGAGCATGTTAAA 60.054 47.826 0.00 0.00 0.00 1.52
2359 13040 4.569015 GGGGTAAGAGGGAGCATGTTAAAA 60.569 45.833 0.00 0.00 0.00 1.52
2360 13041 5.201243 GGGTAAGAGGGAGCATGTTAAAAT 58.799 41.667 0.00 0.00 0.00 1.82
2361 13042 5.656859 GGGTAAGAGGGAGCATGTTAAAATT 59.343 40.000 0.00 0.00 0.00 1.82
2362 13043 6.154534 GGGTAAGAGGGAGCATGTTAAAATTT 59.845 38.462 0.00 0.00 0.00 1.82
2363 13044 7.035612 GGTAAGAGGGAGCATGTTAAAATTTG 58.964 38.462 0.00 0.00 0.00 2.32
2364 13045 5.077134 AGAGGGAGCATGTTAAAATTTGC 57.923 39.130 0.00 0.00 35.34 3.68
2365 13046 4.081476 AGAGGGAGCATGTTAAAATTTGCC 60.081 41.667 0.00 0.00 35.71 4.52
2366 13047 2.929398 GGGAGCATGTTAAAATTTGCCG 59.071 45.455 0.00 0.00 35.71 5.69
2367 13048 3.584834 GGAGCATGTTAAAATTTGCCGT 58.415 40.909 0.00 0.00 35.71 5.68
2368 13049 4.381079 GGGAGCATGTTAAAATTTGCCGTA 60.381 41.667 0.00 0.00 35.71 4.02
2369 13050 4.561213 GGAGCATGTTAAAATTTGCCGTAC 59.439 41.667 0.00 0.00 35.71 3.67
2378 13059 7.743838 TGTTAAAATTTGCCGTACGTAATACAC 59.256 33.333 15.21 6.66 32.79 2.90
2518 13222 2.154462 CTTGTTCAATCGGGAAGCAGT 58.846 47.619 0.00 0.00 0.00 4.40
2577 13282 7.862675 AGCATAGTAGGAGTTTTTGTAGGAAT 58.137 34.615 0.00 0.00 0.00 3.01
2622 13327 6.206634 TCAATTTATTCTGCTTTCAAGTCGGT 59.793 34.615 0.00 0.00 0.00 4.69
2646 13351 7.657354 GGTTTTTGAGCCATTAGTTTGAAATCT 59.343 33.333 0.00 0.00 0.00 2.40
2665 13370 2.495270 TCTGATGACTCTGGTTCAGCTC 59.505 50.000 0.00 0.00 36.41 4.09
2734 13439 3.946907 GCAACGCCACTTCGTAGT 58.053 55.556 0.00 0.00 42.46 2.73
2743 13448 1.442769 CACTTCGTAGTGCAATGCCT 58.557 50.000 9.35 1.90 44.81 4.75
2754 13459 2.110967 CAATGCCTGCCTCCGACAG 61.111 63.158 0.00 0.00 34.82 3.51
2811 13516 4.080919 ACTGTCTAATGAATAGCACCTGCA 60.081 41.667 0.00 0.00 45.16 4.41
2917 13622 2.159653 GCTCAATACGCAGACACCAAAG 60.160 50.000 0.00 0.00 0.00 2.77
2923 13628 0.662619 CGCAGACACCAAAGCTTTCA 59.337 50.000 9.23 0.00 0.00 2.69
3090 13797 6.494893 TCTTTATTACTTCATGCACGCTTT 57.505 33.333 0.00 0.00 0.00 3.51
3142 13866 6.547880 GTGTTTACCCTCTAGATCTCTGATCA 59.452 42.308 0.00 0.00 0.00 2.92
3231 13955 0.394352 ATCGGATTTGGTGAGGGCAC 60.394 55.000 0.00 0.00 44.39 5.01
3281 14005 8.071122 TGCGAAGGATTTTCACTTTAATTTTG 57.929 30.769 0.00 0.00 0.00 2.44
3344 14068 2.061182 TTAACGGGTGCACGCAAACC 62.061 55.000 30.29 15.78 37.37 3.27
3381 14106 4.324331 GGCTTCAATTACCAGTACTCCCTT 60.324 45.833 0.00 0.00 0.00 3.95
3382 14107 4.636206 GCTTCAATTACCAGTACTCCCTTG 59.364 45.833 0.00 0.00 0.00 3.61
3383 14108 5.803470 GCTTCAATTACCAGTACTCCCTTGT 60.803 44.000 0.00 0.00 0.00 3.16
3384 14109 5.836024 TCAATTACCAGTACTCCCTTGTT 57.164 39.130 0.00 0.00 0.00 2.83
3612 14342 2.474112 AGGACGGAGGGTTATGCTTAA 58.526 47.619 0.00 0.00 0.00 1.85
3616 14346 3.869832 GACGGAGGGTTATGCTTAACTTC 59.130 47.826 18.71 15.96 38.22 3.01
3630 14360 5.302059 TGCTTAACTTCATAGGAGCGATAGT 59.698 40.000 0.00 0.00 39.35 2.12
3660 14424 2.159382 GGTGGGTGAATCGATGTTTGT 58.841 47.619 0.00 0.00 0.00 2.83
3673 14437 3.304659 CGATGTTTGTAAGCCCATATGCC 60.305 47.826 0.00 0.00 0.00 4.40
3695 14459 5.864474 GCCGTACATCTTACTTCCATAGATG 59.136 44.000 9.18 9.18 46.73 2.90
3816 14580 2.757868 GCTGTTGGTGGGCACATTATAA 59.242 45.455 0.00 0.00 0.00 0.98
3823 14587 3.018149 GTGGGCACATTATAAAACCCGA 58.982 45.455 0.00 0.00 40.41 5.14
3862 14626 2.202703 CGTTTCGCTAGTCCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
3952 14754 6.295249 TCAGAACTTGTGTAATTGGACATCA 58.705 36.000 0.00 0.00 0.00 3.07
3965 14767 1.066605 GGACATCATGTTGAGCCATGC 59.933 52.381 10.74 0.00 41.60 4.06
3997 14799 3.570926 ATGCTCATGTTTGTTGCTGAG 57.429 42.857 0.00 0.00 38.49 3.35
4081 14900 4.024218 GCTGAAATATGCTCCTTGTAGCTG 60.024 45.833 0.00 0.00 43.19 4.24
4082 14901 3.879295 TGAAATATGCTCCTTGTAGCTGC 59.121 43.478 0.00 0.00 43.19 5.25
4103 14938 6.929049 GCTGCTGAACCATGTACTATTGTATA 59.071 38.462 0.00 0.00 0.00 1.47
4127 14962 5.067674 AGTGCTGAAATTTGCTCAAGTTGTA 59.932 36.000 2.11 0.00 0.00 2.41
4128 14963 5.922544 GTGCTGAAATTTGCTCAAGTTGTAT 59.077 36.000 2.11 0.00 0.00 2.29
4129 14964 5.921976 TGCTGAAATTTGCTCAAGTTGTATG 59.078 36.000 2.11 0.00 0.00 2.39
4144 14979 6.699575 AGTTGTATGGCTGAAATATGTTCC 57.300 37.500 0.00 0.00 0.00 3.62
4153 14988 5.473039 GCTGAAATATGTTCCTTTTGCTGT 58.527 37.500 0.00 0.00 0.00 4.40
4160 14995 8.538409 AATATGTTCCTTTTGCTGTTGAAATC 57.462 30.769 0.00 0.00 0.00 2.17
4161 14996 5.336150 TGTTCCTTTTGCTGTTGAAATCA 57.664 34.783 0.00 0.00 0.00 2.57
4175 15013 7.116662 GCTGTTGAAATCATATTCTTTGTTGCA 59.883 33.333 0.00 0.00 0.00 4.08
4198 15036 7.698836 CAACTATGTTTGCTTAAATATGCCC 57.301 36.000 0.00 0.00 0.00 5.36
4205 15043 6.070309 TGTTTGCTTAAATATGCCCATTTCCT 60.070 34.615 0.00 0.00 30.84 3.36
4264 15113 0.466555 AAAAACTAGCCCCGCACACA 60.467 50.000 0.00 0.00 0.00 3.72
4269 15118 2.244117 CTAGCCCCGCACACAGTGAT 62.244 60.000 7.81 0.00 35.23 3.06
4358 15207 1.002134 CCCCGTTGCCATCTTGAGT 60.002 57.895 0.00 0.00 0.00 3.41
4359 15208 0.609131 CCCCGTTGCCATCTTGAGTT 60.609 55.000 0.00 0.00 0.00 3.01
4360 15209 1.247567 CCCGTTGCCATCTTGAGTTT 58.752 50.000 0.00 0.00 0.00 2.66
4361 15210 1.613437 CCCGTTGCCATCTTGAGTTTT 59.387 47.619 0.00 0.00 0.00 2.43
4362 15211 2.351738 CCCGTTGCCATCTTGAGTTTTC 60.352 50.000 0.00 0.00 0.00 2.29
4495 15344 8.196771 TGCTTGGTTAATGATGAAATTGATACC 58.803 33.333 0.00 0.00 0.00 2.73
4522 15371 6.948309 GGCATGATATTAATTAGTGGAGGGTT 59.052 38.462 0.00 0.00 0.00 4.11
4537 15386 7.238710 AGTGGAGGGTTCTAAACATGTTTAAT 58.761 34.615 26.60 9.19 34.95 1.40
4548 15397 6.509317 AAACATGTTTAATGCTGAACAACG 57.491 33.333 22.10 0.00 39.03 4.10
4562 15411 1.405872 ACAACGGAGTGGTGTAGACA 58.594 50.000 0.00 0.00 46.92 3.41
4575 15424 5.938125 GTGGTGTAGACAGTTGGATAAATGT 59.062 40.000 0.00 0.00 46.62 2.71
4583 15432 6.721208 AGACAGTTGGATAAATGTGGTTGAAT 59.279 34.615 0.00 0.00 44.28 2.57
4598 15447 8.586879 TGTGGTTGAATGGATGAAATATGTTA 57.413 30.769 0.00 0.00 0.00 2.41
4653 15502 7.601130 GGTACTCGTTGGATAAATGCATACATA 59.399 37.037 0.00 0.00 34.62 2.29
4681 15530 4.913355 TCCCACCCATATGAGATACATGTT 59.087 41.667 2.30 0.00 39.77 2.71
4684 15533 7.904022 TCCCACCCATATGAGATACATGTTATA 59.096 37.037 2.30 0.00 39.77 0.98
4685 15534 8.717717 CCCACCCATATGAGATACATGTTATAT 58.282 37.037 2.30 0.00 39.77 0.86
4722 15571 1.022735 GTCAGCAATGATCCTGCAGG 58.977 55.000 27.87 27.87 42.48 4.85
4736 15585 5.514500 TCCTGCAGGGATACTTTACTTTT 57.486 39.130 32.23 0.00 39.58 2.27
4737 15586 5.253330 TCCTGCAGGGATACTTTACTTTTG 58.747 41.667 32.23 0.38 39.58 2.44
4777 15626 3.961477 TCATTCTTTTGTGGTGTGACG 57.039 42.857 0.00 0.00 0.00 4.35
5163 16012 5.376625 TCTATCAATGGATTTGGTAGGTGC 58.623 41.667 5.94 0.00 45.45 5.01
5201 16050 2.125713 AACGCGATCGGCACATCA 60.126 55.556 15.93 0.00 43.84 3.07
5267 16125 4.946157 CCAAGCTCTAGTCCATCAACAAAT 59.054 41.667 0.00 0.00 0.00 2.32
5272 16130 6.888632 AGCTCTAGTCCATCAACAAATGAAAT 59.111 34.615 0.00 0.00 42.54 2.17
5273 16131 7.066766 AGCTCTAGTCCATCAACAAATGAAATC 59.933 37.037 0.00 0.00 42.54 2.17
5274 16132 7.307493 TCTAGTCCATCAACAAATGAAATCG 57.693 36.000 0.00 0.00 42.54 3.34
5276 16134 5.009631 AGTCCATCAACAAATGAAATCGGA 58.990 37.500 0.00 0.00 42.54 4.55
5331 16189 0.530288 TGATCACAATGTCGCCGAGA 59.470 50.000 0.00 0.00 0.00 4.04
5357 16215 0.033991 TCTCTGAGCTAGGCGAGGTT 60.034 55.000 0.00 0.00 35.50 3.50
5389 16247 1.405469 GACGCCAACATCAATTGCGC 61.405 55.000 0.00 0.00 34.56 6.09
5458 16316 2.092968 TGTGTGCTCTTGAGGACAACTT 60.093 45.455 22.81 0.00 41.58 2.66
5635 16493 0.107456 GACATGGATGTGCGGGATCT 59.893 55.000 0.00 0.00 41.95 2.75
5857 16740 7.113264 GCAAATTGCACAAAATGTTTTCCATAC 59.887 33.333 13.73 0.00 44.26 2.39
6016 16899 1.076485 GGGGCTCCATGATGTTGCT 60.076 57.895 0.00 0.00 0.00 3.91
6017 16900 0.183492 GGGGCTCCATGATGTTGCTA 59.817 55.000 0.00 0.00 0.00 3.49
6096 16979 0.815615 GAGGATGACGATGGCCCAAC 60.816 60.000 0.00 0.00 0.00 3.77
6124 17007 4.239428 TGTCAATGTGACCATGATGGAT 57.761 40.909 20.11 1.99 46.40 3.41
6127 17010 6.367161 TGTCAATGTGACCATGATGGATAAT 58.633 36.000 20.11 3.30 46.40 1.28
6195 17078 2.363807 GAGTGTTCGACGCCATCAG 58.636 57.895 0.00 0.00 0.00 2.90
6202 17085 2.490148 CGACGCCATCAGGAGCCTA 61.490 63.158 0.00 0.00 38.42 3.93
6285 17168 0.603975 GCCACTCACCAGGTCTCAAC 60.604 60.000 0.00 0.00 0.00 3.18
6322 17205 9.069082 CCTTCTAAGGTCGATCCGATAATATAT 57.931 37.037 0.24 0.00 41.41 0.86
6323 17206 9.885934 CTTCTAAGGTCGATCCGATAATATATG 57.114 37.037 0.00 0.00 41.99 1.78
6324 17207 8.975663 TCTAAGGTCGATCCGATAATATATGT 57.024 34.615 0.00 0.00 41.99 2.29
6385 17268 7.029563 GTCTCATTTACCAACATTGTTGGATC 58.970 38.462 41.36 21.32 42.06 3.36
6409 17292 3.365265 GGTTGCGGCTGGTTCTGG 61.365 66.667 0.00 0.00 0.00 3.86
6440 17323 1.211212 CCTGGGATGATCACTGAAGCA 59.789 52.381 0.00 0.00 0.00 3.91
6476 17359 1.349234 GCAACCGCTGGCAAAATTAG 58.651 50.000 0.00 0.00 34.30 1.73
6493 17376 7.761249 GCAAAATTAGTATCAAAAGCATGACCT 59.239 33.333 0.00 0.00 30.82 3.85
6508 17391 0.171455 GACCTGACACCAGTAGAGCG 59.829 60.000 0.00 0.00 38.74 5.03
6522 17405 2.846039 AGAGCGTGGTATAGTGTTCG 57.154 50.000 0.00 0.00 0.00 3.95
6594 17477 9.981114 TGACTATATCAACATCATACGTGAATT 57.019 29.630 0.00 0.00 34.11 2.17
6627 17510 5.175127 TGTACACGATGACAAAGTGCATAT 58.825 37.500 11.96 0.00 39.31 1.78
6631 17514 5.355071 ACACGATGACAAAGTGCATATCAAT 59.645 36.000 11.96 0.00 39.31 2.57
6930 17819 7.987458 TCTCCTTCACCAACATAATTCTATCAC 59.013 37.037 0.00 0.00 0.00 3.06
6937 17826 6.319658 ACCAACATAATTCTATCACAGCCAAG 59.680 38.462 0.00 0.00 0.00 3.61
6959 17848 1.683917 ACTGGCGGCAAACACATTTTA 59.316 42.857 14.48 0.00 0.00 1.52
7010 17899 8.587608 CGGTAATTAGGGACTACATACCAATTA 58.412 37.037 13.07 0.00 45.39 1.40
7036 17925 2.093128 GGCCGTTTCTCCCAGAATCTTA 60.093 50.000 0.00 0.00 33.67 2.10
7156 18046 5.735733 TGGGTTAAGATTGCCCCTAAATA 57.264 39.130 0.00 0.00 41.66 1.40
7157 18047 5.701224 TGGGTTAAGATTGCCCCTAAATAG 58.299 41.667 0.00 0.00 41.66 1.73
7158 18048 5.077564 GGGTTAAGATTGCCCCTAAATAGG 58.922 45.833 0.00 0.00 43.25 2.57
7159 18049 5.399842 GGGTTAAGATTGCCCCTAAATAGGT 60.400 44.000 5.78 0.00 42.03 3.08
7160 18050 5.535030 GGTTAAGATTGCCCCTAAATAGGTG 59.465 44.000 5.78 0.00 42.03 4.00
7161 18051 3.884037 AGATTGCCCCTAAATAGGTGG 57.116 47.619 5.78 7.48 42.03 4.61
7162 18052 3.131252 AGATTGCCCCTAAATAGGTGGT 58.869 45.455 5.78 0.00 42.03 4.16
7163 18053 2.818751 TTGCCCCTAAATAGGTGGTG 57.181 50.000 5.78 0.00 42.03 4.17
7164 18054 0.257616 TGCCCCTAAATAGGTGGTGC 59.742 55.000 5.78 3.85 42.03 5.01
7165 18055 0.467474 GCCCCTAAATAGGTGGTGCC 60.467 60.000 5.78 0.00 42.03 5.01
7166 18056 0.923358 CCCCTAAATAGGTGGTGCCA 59.077 55.000 5.78 0.00 42.03 4.92
7167 18057 1.499007 CCCCTAAATAGGTGGTGCCAT 59.501 52.381 5.78 0.00 42.03 4.40
7168 18058 2.489073 CCCCTAAATAGGTGGTGCCATC 60.489 54.545 5.78 0.00 42.03 3.51
7169 18059 2.489073 CCCTAAATAGGTGGTGCCATCC 60.489 54.545 5.78 0.35 42.03 3.51
7170 18060 2.489073 CCTAAATAGGTGGTGCCATCCC 60.489 54.545 0.00 0.00 40.61 3.85
7171 18061 0.261696 AAATAGGTGGTGCCATCCCC 59.738 55.000 0.00 0.00 40.61 4.81
7172 18062 1.655114 AATAGGTGGTGCCATCCCCC 61.655 60.000 0.00 0.00 40.61 5.40
7226 18129 5.960811 TCTCTCTCTTCTCTCTCTCTCTCTT 59.039 44.000 0.00 0.00 0.00 2.85
7235 18155 5.721480 TCTCTCTCTCTCTCTTTCTCTCTCA 59.279 44.000 0.00 0.00 0.00 3.27
7240 18160 5.192927 TCTCTCTCTTTCTCTCTCATCACC 58.807 45.833 0.00 0.00 0.00 4.02
7241 18161 4.277476 TCTCTCTTTCTCTCTCATCACCC 58.723 47.826 0.00 0.00 0.00 4.61
7248 18168 2.828520 TCTCTCTCATCACCCAAGACAC 59.171 50.000 0.00 0.00 0.00 3.67
7249 18169 2.830923 CTCTCTCATCACCCAAGACACT 59.169 50.000 0.00 0.00 0.00 3.55
7250 18170 3.242867 TCTCTCATCACCCAAGACACTT 58.757 45.455 0.00 0.00 0.00 3.16
7251 18171 4.416516 TCTCTCATCACCCAAGACACTTA 58.583 43.478 0.00 0.00 0.00 2.24
7252 18172 5.026121 TCTCTCATCACCCAAGACACTTAT 58.974 41.667 0.00 0.00 0.00 1.73
7253 18173 5.127845 TCTCTCATCACCCAAGACACTTATC 59.872 44.000 0.00 0.00 0.00 1.75
7397 18332 0.177604 GAGTCTGCATGTCCTCCAGG 59.822 60.000 0.00 0.00 0.00 4.45
7454 18389 8.593679 TGTCTTTGTCTCTGATGGATTACTTAA 58.406 33.333 0.00 0.00 0.00 1.85
7456 18391 7.766278 TCTTTGTCTCTGATGGATTACTTAAGC 59.234 37.037 1.29 0.00 0.00 3.09
7467 18402 4.889995 GGATTACTTAAGCCTTCCTGCAAT 59.110 41.667 1.29 0.00 38.65 3.56
7474 18409 1.165270 GCCTTCCTGCAATGTACGTT 58.835 50.000 0.00 0.00 0.00 3.99
7476 18411 2.422597 CCTTCCTGCAATGTACGTTCA 58.577 47.619 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 1.805254 CCTTGCCATCGCCAAAGAG 59.195 57.895 0.00 0.00 0.00 2.85
115 1014 4.237349 ACAACAGGAATGGCTTTTTACG 57.763 40.909 0.00 0.00 0.00 3.18
149 1056 1.335964 TGCTCTCGACAGAAACGGAAG 60.336 52.381 0.00 0.00 0.00 3.46
212 1125 4.147449 CTCTCCGCCGCATCACCA 62.147 66.667 0.00 0.00 0.00 4.17
213 1126 4.899239 CCTCTCCGCCGCATCACC 62.899 72.222 0.00 0.00 0.00 4.02
238 1151 1.279271 GACAAAGGGAGCCTTCTAGCA 59.721 52.381 0.00 0.00 43.92 3.49
337 1250 7.936584 TCAAAGATGAAAACTACGGATTTGTT 58.063 30.769 0.00 0.00 30.99 2.83
372 1285 0.324923 TGGGAGGCCGTAGAAGCTAA 60.325 55.000 0.00 0.00 0.00 3.09
448 1368 8.711457 TCATGCATGTGATTGTTAGATTATACG 58.289 33.333 25.43 0.00 0.00 3.06
476 1396 3.764434 GAGACACACTCCATAAGTCCTCA 59.236 47.826 0.00 0.00 39.53 3.86
485 1405 1.051008 TGTGCAGAGACACACTCCAT 58.949 50.000 0.00 0.00 45.36 3.41
553 1481 4.260948 GCTATAGCACCTCTTGTTTGCATC 60.261 45.833 20.01 0.00 41.59 3.91
599 1543 1.002142 GTGAAAAACCCGTAGCCACAC 60.002 52.381 0.00 0.00 0.00 3.82
622 1566 3.057806 ACACCATTTTTAGTAAGCCACGC 60.058 43.478 0.00 0.00 0.00 5.34
625 1569 7.278868 CACAAAAACACCATTTTTAGTAAGCCA 59.721 33.333 0.00 0.00 30.31 4.75
669 1613 5.587844 CAGCTAGCAACATACTCTCCATTTT 59.412 40.000 18.83 0.00 0.00 1.82
751 1748 5.188751 GCAAGCTATATAGAATCTGGGAGGT 59.811 44.000 14.16 0.00 0.00 3.85
752 1749 5.396213 GGCAAGCTATATAGAATCTGGGAGG 60.396 48.000 14.16 0.00 0.00 4.30
753 1750 5.424895 AGGCAAGCTATATAGAATCTGGGAG 59.575 44.000 14.16 0.00 0.00 4.30
754 1751 5.345418 AGGCAAGCTATATAGAATCTGGGA 58.655 41.667 14.16 0.00 0.00 4.37
755 1752 5.690464 AGGCAAGCTATATAGAATCTGGG 57.310 43.478 14.16 0.04 0.00 4.45
756 1753 5.879223 CCAAGGCAAGCTATATAGAATCTGG 59.121 44.000 14.16 6.18 0.00 3.86
757 1754 6.705302 TCCAAGGCAAGCTATATAGAATCTG 58.295 40.000 14.16 5.41 0.00 2.90
884 2151 8.431910 AATCTGGTTAGACCTTACTTACTTGA 57.568 34.615 0.00 0.00 39.58 3.02
895 2170 4.729868 AGCAAACAAATCTGGTTAGACCT 58.270 39.130 0.00 0.00 39.58 3.85
919 2262 4.763073 TCACAAGGTGAAGCTAGATGATG 58.237 43.478 0.00 0.00 39.78 3.07
988 2335 4.574421 TGATAACGCCATTGATTACCACAG 59.426 41.667 0.00 0.00 0.00 3.66
1169 11795 6.254373 CGCCAGCTATGTATACATGAATGTAG 59.746 42.308 25.48 15.53 45.46 2.74
1193 11823 5.625311 GCTTCAAGAAAATACCAACTTGTCG 59.375 40.000 0.00 0.00 40.07 4.35
1236 11869 8.307483 CGATAGGTTCTGGATATGAAATGTACT 58.693 37.037 0.00 0.00 0.00 2.73
1469 12102 1.458588 GGCTTCCCCGAGATCCTCT 60.459 63.158 0.00 0.00 0.00 3.69
1541 12174 5.924254 TGAATGCGTATAGTAGTTGCATACC 59.076 40.000 6.29 3.78 44.87 2.73
1574 12243 7.136119 TGCTATCTTTTCTGTTTTTACGGTTG 58.864 34.615 0.00 0.00 0.00 3.77
1585 12254 5.940470 AGATTCCGTTTGCTATCTTTTCTGT 59.060 36.000 0.00 0.00 0.00 3.41
1702 12372 4.533222 TGAGCGGAATTTTCGTTTTCTTC 58.467 39.130 0.00 0.00 0.00 2.87
1705 12375 4.501198 TGTTTGAGCGGAATTTTCGTTTTC 59.499 37.500 0.00 0.00 0.00 2.29
1760 12430 2.171870 CCGGGGAGCTCCTTACAATAAA 59.828 50.000 31.36 0.00 35.95 1.40
1767 12437 0.759436 GACATCCGGGGAGCTCCTTA 60.759 60.000 31.36 14.98 35.95 2.69
1778 12448 1.666209 GGTGGCCAAATGACATCCGG 61.666 60.000 7.24 0.00 0.00 5.14
1825 12495 8.250332 TGAAACCTTGTGGCTTTAATTATGATC 58.750 33.333 0.00 0.00 36.63 2.92
1834 12504 6.097554 TCAAATTCTGAAACCTTGTGGCTTTA 59.902 34.615 0.00 0.00 36.63 1.85
1837 12507 3.960102 TCAAATTCTGAAACCTTGTGGCT 59.040 39.130 0.00 0.00 36.63 4.75
1843 12513 8.183536 GCAAACAAAATCAAATTCTGAAACCTT 58.816 29.630 0.00 0.00 37.67 3.50
1845 12515 7.696755 AGCAAACAAAATCAAATTCTGAAACC 58.303 30.769 0.00 0.00 37.67 3.27
1889 12563 1.468565 GCATTGCACGCATGATGAACT 60.469 47.619 3.15 0.00 0.00 3.01
1930 12604 5.151389 GGCGTATGGTAGAAAAACTTTGTG 58.849 41.667 0.00 0.00 0.00 3.33
1931 12605 4.216902 GGGCGTATGGTAGAAAAACTTTGT 59.783 41.667 0.00 0.00 0.00 2.83
1932 12606 4.216687 TGGGCGTATGGTAGAAAAACTTTG 59.783 41.667 0.00 0.00 0.00 2.77
1933 12607 4.400120 TGGGCGTATGGTAGAAAAACTTT 58.600 39.130 0.00 0.00 0.00 2.66
1934 12608 4.023726 TGGGCGTATGGTAGAAAAACTT 57.976 40.909 0.00 0.00 0.00 2.66
1935 12609 3.706600 TGGGCGTATGGTAGAAAAACT 57.293 42.857 0.00 0.00 0.00 2.66
1936 12610 3.427098 GCTTGGGCGTATGGTAGAAAAAC 60.427 47.826 0.00 0.00 0.00 2.43
1937 12611 2.750712 GCTTGGGCGTATGGTAGAAAAA 59.249 45.455 0.00 0.00 0.00 1.94
1938 12612 2.026636 AGCTTGGGCGTATGGTAGAAAA 60.027 45.455 0.00 0.00 44.37 2.29
1939 12613 1.557832 AGCTTGGGCGTATGGTAGAAA 59.442 47.619 0.00 0.00 44.37 2.52
1940 12614 1.200519 AGCTTGGGCGTATGGTAGAA 58.799 50.000 0.00 0.00 44.37 2.10
1941 12615 1.961394 CTAGCTTGGGCGTATGGTAGA 59.039 52.381 0.00 0.00 44.37 2.59
1942 12616 1.687123 ACTAGCTTGGGCGTATGGTAG 59.313 52.381 0.00 9.41 44.37 3.18
1943 12617 1.784358 ACTAGCTTGGGCGTATGGTA 58.216 50.000 0.00 0.00 44.37 3.25
1944 12618 0.909623 AACTAGCTTGGGCGTATGGT 59.090 50.000 0.00 0.00 44.37 3.55
1945 12619 2.038387 AAACTAGCTTGGGCGTATGG 57.962 50.000 0.00 0.00 44.37 2.74
1946 12620 4.189231 AGTTAAACTAGCTTGGGCGTATG 58.811 43.478 0.00 0.00 44.37 2.39
1947 12621 4.161754 AGAGTTAAACTAGCTTGGGCGTAT 59.838 41.667 0.00 0.00 44.37 3.06
1948 12622 3.512724 AGAGTTAAACTAGCTTGGGCGTA 59.487 43.478 0.00 0.00 44.37 4.42
1977 12651 9.495572 GCTTGCTATATATATCACCCTTTATCC 57.504 37.037 0.00 0.00 0.00 2.59
2000 12674 6.995686 TCCAATACATCAAACCATATACGCTT 59.004 34.615 0.00 0.00 0.00 4.68
2082 12756 7.065283 GCAGTTTTGTCATGTTTATCTTTTGC 58.935 34.615 0.00 0.00 0.00 3.68
2090 12767 9.371136 TGTTTTTATGCAGTTTTGTCATGTTTA 57.629 25.926 0.00 0.00 0.00 2.01
2106 12783 5.751243 ATCCTATCACCGTGTTTTTATGC 57.249 39.130 0.00 0.00 0.00 3.14
2152 12829 2.676839 TGTTGTTTTAGGTGCGTCGAAA 59.323 40.909 0.00 0.00 0.00 3.46
2172 12853 4.873768 AATGTTTTGCCGGTTTTTCTTG 57.126 36.364 1.90 0.00 0.00 3.02
2196 12877 3.435671 AGCATGCTAAAACTGTTCCGTAC 59.564 43.478 21.21 0.00 0.00 3.67
2197 12878 3.670625 AGCATGCTAAAACTGTTCCGTA 58.329 40.909 21.21 0.00 0.00 4.02
2198 12879 2.484264 GAGCATGCTAAAACTGTTCCGT 59.516 45.455 22.74 0.00 0.00 4.69
2199 12880 2.159517 GGAGCATGCTAAAACTGTTCCG 60.160 50.000 22.74 0.00 31.88 4.30
2200 12881 2.164422 GGGAGCATGCTAAAACTGTTCC 59.836 50.000 22.74 14.09 38.96 3.62
2201 12882 3.084786 AGGGAGCATGCTAAAACTGTTC 58.915 45.455 22.74 4.58 0.00 3.18
2202 12883 3.084786 GAGGGAGCATGCTAAAACTGTT 58.915 45.455 22.74 0.00 0.00 3.16
2203 12884 2.307098 AGAGGGAGCATGCTAAAACTGT 59.693 45.455 22.74 11.80 0.00 3.55
2204 12885 2.996631 AGAGGGAGCATGCTAAAACTG 58.003 47.619 22.74 0.00 0.00 3.16
2205 12886 3.728385 AAGAGGGAGCATGCTAAAACT 57.272 42.857 22.74 15.86 0.00 2.66
2206 12887 3.628032 GGTAAGAGGGAGCATGCTAAAAC 59.372 47.826 22.74 12.78 0.00 2.43
2207 12888 3.371595 GGGTAAGAGGGAGCATGCTAAAA 60.372 47.826 22.74 0.00 0.00 1.52
2208 12889 2.172717 GGGTAAGAGGGAGCATGCTAAA 59.827 50.000 22.74 0.00 0.00 1.85
2209 12890 1.768870 GGGTAAGAGGGAGCATGCTAA 59.231 52.381 22.74 0.00 0.00 3.09
2210 12891 1.424638 GGGTAAGAGGGAGCATGCTA 58.575 55.000 22.74 0.00 0.00 3.49
2211 12892 1.348775 GGGGTAAGAGGGAGCATGCT 61.349 60.000 22.92 22.92 0.00 3.79
2212 12893 1.149401 GGGGTAAGAGGGAGCATGC 59.851 63.158 10.51 10.51 0.00 4.06
2213 12894 0.695803 AGGGGGTAAGAGGGAGCATG 60.696 60.000 0.00 0.00 0.00 4.06
2214 12895 0.400670 GAGGGGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
2215 12896 1.003051 GAGGGGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
2216 12897 0.326713 AAGAGGGGGTAAGAGGGAGC 60.327 60.000 0.00 0.00 0.00 4.70
2217 12898 2.272074 AAAGAGGGGGTAAGAGGGAG 57.728 55.000 0.00 0.00 0.00 4.30
2218 12899 2.157911 TGAAAAGAGGGGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
2219 12900 2.026169 GTGAAAAGAGGGGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
2220 12901 2.642807 TGTGAAAAGAGGGGGTAAGAGG 59.357 50.000 0.00 0.00 0.00 3.69
2221 12902 4.019321 TCATGTGAAAAGAGGGGGTAAGAG 60.019 45.833 0.00 0.00 0.00 2.85
2222 12903 3.913799 TCATGTGAAAAGAGGGGGTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
2223 12904 4.019321 TCTCATGTGAAAAGAGGGGGTAAG 60.019 45.833 0.00 0.00 0.00 2.34
2224 12905 3.913799 TCTCATGTGAAAAGAGGGGGTAA 59.086 43.478 0.00 0.00 0.00 2.85
2225 12906 3.519510 CTCTCATGTGAAAAGAGGGGGTA 59.480 47.826 0.00 0.00 34.24 3.69
2226 12907 2.307098 CTCTCATGTGAAAAGAGGGGGT 59.693 50.000 0.00 0.00 34.24 4.95
2227 12908 2.996631 CTCTCATGTGAAAAGAGGGGG 58.003 52.381 0.00 0.00 34.24 5.40
2231 12912 6.696411 ACTCTTACCTCTCATGTGAAAAGAG 58.304 40.000 24.85 24.85 42.67 2.85
2232 12913 6.672266 ACTCTTACCTCTCATGTGAAAAGA 57.328 37.500 12.55 12.55 0.00 2.52
2257 12938 9.408648 TGAGATCAACGGCTCATATCTATTATA 57.591 33.333 0.00 0.00 36.31 0.98
2258 12939 8.298729 TGAGATCAACGGCTCATATCTATTAT 57.701 34.615 0.00 0.00 36.31 1.28
2259 12940 7.703058 TGAGATCAACGGCTCATATCTATTA 57.297 36.000 0.00 0.00 36.31 0.98
2260 12941 6.596309 TGAGATCAACGGCTCATATCTATT 57.404 37.500 0.00 0.00 36.31 1.73
2261 12942 6.788598 ATGAGATCAACGGCTCATATCTAT 57.211 37.500 0.00 0.00 46.82 1.98
2268 12949 6.479990 CACTAATTAATGAGATCAACGGCTCA 59.520 38.462 6.84 0.00 44.43 4.26
2269 12950 6.073548 CCACTAATTAATGAGATCAACGGCTC 60.074 42.308 6.84 0.00 0.00 4.70
2270 12951 5.760253 CCACTAATTAATGAGATCAACGGCT 59.240 40.000 6.84 0.00 0.00 5.52
2271 12952 5.527582 ACCACTAATTAATGAGATCAACGGC 59.472 40.000 6.84 0.00 0.00 5.68
2272 12953 6.986817 AGACCACTAATTAATGAGATCAACGG 59.013 38.462 6.84 0.54 0.00 4.44
2273 12954 7.706607 TCAGACCACTAATTAATGAGATCAACG 59.293 37.037 6.84 0.00 0.00 4.10
2274 12955 8.948631 TCAGACCACTAATTAATGAGATCAAC 57.051 34.615 6.84 0.00 0.00 3.18
2286 12967 9.047947 AGGTAAGAGTTAATCAGACCACTAATT 57.952 33.333 5.95 0.00 37.39 1.40
2287 12968 8.611051 AGGTAAGAGTTAATCAGACCACTAAT 57.389 34.615 5.95 0.00 37.39 1.73
2288 12969 8.431910 AAGGTAAGAGTTAATCAGACCACTAA 57.568 34.615 5.95 0.00 37.39 2.24
2289 12970 7.894364 AGAAGGTAAGAGTTAATCAGACCACTA 59.106 37.037 5.95 0.00 37.39 2.74
2290 12971 6.726764 AGAAGGTAAGAGTTAATCAGACCACT 59.273 38.462 5.95 2.85 37.39 4.00
2291 12972 6.937392 AGAAGGTAAGAGTTAATCAGACCAC 58.063 40.000 5.95 1.06 37.39 4.16
2292 12973 7.554959 AAGAAGGTAAGAGTTAATCAGACCA 57.445 36.000 5.95 0.00 37.39 4.02
2293 12974 7.980662 GGTAAGAAGGTAAGAGTTAATCAGACC 59.019 40.741 0.00 0.00 35.92 3.85
2294 12975 8.751242 AGGTAAGAAGGTAAGAGTTAATCAGAC 58.249 37.037 0.00 0.00 0.00 3.51
2295 12976 8.896722 AGGTAAGAAGGTAAGAGTTAATCAGA 57.103 34.615 0.00 0.00 0.00 3.27
2296 12977 8.750298 TGAGGTAAGAAGGTAAGAGTTAATCAG 58.250 37.037 0.00 0.00 0.00 2.90
2297 12978 8.529476 GTGAGGTAAGAAGGTAAGAGTTAATCA 58.471 37.037 0.00 0.00 0.00 2.57
2298 12979 8.529476 TGTGAGGTAAGAAGGTAAGAGTTAATC 58.471 37.037 0.00 0.00 0.00 1.75
2299 12980 8.431910 TGTGAGGTAAGAAGGTAAGAGTTAAT 57.568 34.615 0.00 0.00 0.00 1.40
2300 12981 7.844493 TGTGAGGTAAGAAGGTAAGAGTTAA 57.156 36.000 0.00 0.00 0.00 2.01
2301 12982 7.453752 ACATGTGAGGTAAGAAGGTAAGAGTTA 59.546 37.037 0.00 0.00 0.00 2.24
2302 12983 6.270231 ACATGTGAGGTAAGAAGGTAAGAGTT 59.730 38.462 0.00 0.00 0.00 3.01
2303 12984 5.780793 ACATGTGAGGTAAGAAGGTAAGAGT 59.219 40.000 0.00 0.00 0.00 3.24
2304 12985 6.287589 ACATGTGAGGTAAGAAGGTAAGAG 57.712 41.667 0.00 0.00 0.00 2.85
2305 12986 7.786046 TTACATGTGAGGTAAGAAGGTAAGA 57.214 36.000 9.11 0.00 0.00 2.10
2306 12987 8.842358 TTTTACATGTGAGGTAAGAAGGTAAG 57.158 34.615 9.11 0.00 32.76 2.34
2307 12988 9.280174 CTTTTTACATGTGAGGTAAGAAGGTAA 57.720 33.333 9.11 0.00 38.37 2.85
2308 12989 8.653191 TCTTTTTACATGTGAGGTAAGAAGGTA 58.347 33.333 9.11 0.00 40.52 3.08
2309 12990 7.514721 TCTTTTTACATGTGAGGTAAGAAGGT 58.485 34.615 9.11 0.00 40.52 3.50
2310 12991 7.979444 TCTTTTTACATGTGAGGTAAGAAGG 57.021 36.000 9.11 0.00 40.52 3.46
2311 12992 8.507249 CCTTCTTTTTACATGTGAGGTAAGAAG 58.493 37.037 25.33 25.33 41.03 2.85
2312 12993 7.447238 CCCTTCTTTTTACATGTGAGGTAAGAA 59.553 37.037 9.11 14.21 32.76 2.52
2313 12994 6.940298 CCCTTCTTTTTACATGTGAGGTAAGA 59.060 38.462 9.11 8.00 32.76 2.10
2314 12995 6.151144 CCCCTTCTTTTTACATGTGAGGTAAG 59.849 42.308 9.11 5.85 32.76 2.34
2315 12996 6.007703 CCCCTTCTTTTTACATGTGAGGTAA 58.992 40.000 9.11 0.00 0.00 2.85
2316 12997 5.073965 ACCCCTTCTTTTTACATGTGAGGTA 59.926 40.000 9.11 0.00 0.00 3.08
2317 12998 4.141018 ACCCCTTCTTTTTACATGTGAGGT 60.141 41.667 9.11 0.00 0.00 3.85
2318 12999 4.407365 ACCCCTTCTTTTTACATGTGAGG 58.593 43.478 9.11 4.34 0.00 3.86
2319 13000 6.940298 TCTTACCCCTTCTTTTTACATGTGAG 59.060 38.462 9.11 1.44 0.00 3.51
2320 13001 6.843752 TCTTACCCCTTCTTTTTACATGTGA 58.156 36.000 9.11 0.00 0.00 3.58
2321 13002 6.151144 CCTCTTACCCCTTCTTTTTACATGTG 59.849 42.308 9.11 0.00 0.00 3.21
2322 13003 6.246163 CCTCTTACCCCTTCTTTTTACATGT 58.754 40.000 2.69 2.69 0.00 3.21
2323 13004 5.652452 CCCTCTTACCCCTTCTTTTTACATG 59.348 44.000 0.00 0.00 0.00 3.21
2324 13005 5.554350 TCCCTCTTACCCCTTCTTTTTACAT 59.446 40.000 0.00 0.00 0.00 2.29
2325 13006 4.915194 TCCCTCTTACCCCTTCTTTTTACA 59.085 41.667 0.00 0.00 0.00 2.41
2326 13007 5.498393 CTCCCTCTTACCCCTTCTTTTTAC 58.502 45.833 0.00 0.00 0.00 2.01
2327 13008 4.018688 GCTCCCTCTTACCCCTTCTTTTTA 60.019 45.833 0.00 0.00 0.00 1.52
2328 13009 3.245300 GCTCCCTCTTACCCCTTCTTTTT 60.245 47.826 0.00 0.00 0.00 1.94
2329 13010 2.309162 GCTCCCTCTTACCCCTTCTTTT 59.691 50.000 0.00 0.00 0.00 2.27
2330 13011 1.916874 GCTCCCTCTTACCCCTTCTTT 59.083 52.381 0.00 0.00 0.00 2.52
2331 13012 1.203440 TGCTCCCTCTTACCCCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
2332 13013 0.417841 TGCTCCCTCTTACCCCTTCT 59.582 55.000 0.00 0.00 0.00 2.85
2333 13014 1.141858 CATGCTCCCTCTTACCCCTTC 59.858 57.143 0.00 0.00 0.00 3.46
2334 13015 1.216990 CATGCTCCCTCTTACCCCTT 58.783 55.000 0.00 0.00 0.00 3.95
2335 13016 0.044855 ACATGCTCCCTCTTACCCCT 59.955 55.000 0.00 0.00 0.00 4.79
2336 13017 0.919710 AACATGCTCCCTCTTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
2337 13018 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
2338 13019 6.775594 AATTTTAACATGCTCCCTCTTACC 57.224 37.500 0.00 0.00 0.00 2.85
2339 13020 6.531594 GCAAATTTTAACATGCTCCCTCTTAC 59.468 38.462 0.00 0.00 35.93 2.34
2340 13021 6.350949 GGCAAATTTTAACATGCTCCCTCTTA 60.351 38.462 0.00 0.00 38.79 2.10
2341 13022 5.482006 GCAAATTTTAACATGCTCCCTCTT 58.518 37.500 0.00 0.00 35.93 2.85
2342 13023 4.081476 GGCAAATTTTAACATGCTCCCTCT 60.081 41.667 0.00 0.00 38.79 3.69
2343 13024 4.183865 GGCAAATTTTAACATGCTCCCTC 58.816 43.478 0.00 0.00 38.79 4.30
2344 13025 3.368323 CGGCAAATTTTAACATGCTCCCT 60.368 43.478 0.00 0.00 38.79 4.20
2345 13026 2.929398 CGGCAAATTTTAACATGCTCCC 59.071 45.455 0.00 0.00 38.79 4.30
2346 13027 3.584834 ACGGCAAATTTTAACATGCTCC 58.415 40.909 0.00 0.00 38.79 4.70
2347 13028 4.262045 CGTACGGCAAATTTTAACATGCTC 59.738 41.667 7.57 0.00 38.79 4.26
2348 13029 4.162812 CGTACGGCAAATTTTAACATGCT 58.837 39.130 7.57 0.00 38.79 3.79
2349 13030 3.915569 ACGTACGGCAAATTTTAACATGC 59.084 39.130 21.06 0.00 38.06 4.06
2350 13031 7.728580 ATTACGTACGGCAAATTTTAACATG 57.271 32.000 21.06 0.00 0.00 3.21
2351 13032 8.449397 TGTATTACGTACGGCAAATTTTAACAT 58.551 29.630 21.06 0.00 36.01 2.71
2352 13033 7.743838 GTGTATTACGTACGGCAAATTTTAACA 59.256 33.333 21.06 12.96 36.01 2.41
2353 13034 7.956943 AGTGTATTACGTACGGCAAATTTTAAC 59.043 33.333 21.06 10.86 36.01 2.01
2354 13035 8.027440 AGTGTATTACGTACGGCAAATTTTAA 57.973 30.769 21.06 6.69 36.01 1.52
2355 13036 7.593875 AGTGTATTACGTACGGCAAATTTTA 57.406 32.000 21.06 0.00 36.01 1.52
2356 13037 6.484818 AGTGTATTACGTACGGCAAATTTT 57.515 33.333 21.06 0.00 36.01 1.82
2357 13038 7.593875 TTAGTGTATTACGTACGGCAAATTT 57.406 32.000 21.06 0.00 36.01 1.82
2358 13039 7.593875 TTTAGTGTATTACGTACGGCAAATT 57.406 32.000 21.06 0.00 36.01 1.82
2359 13040 7.117523 TGTTTTAGTGTATTACGTACGGCAAAT 59.882 33.333 21.06 17.04 36.01 2.32
2360 13041 6.422100 TGTTTTAGTGTATTACGTACGGCAAA 59.578 34.615 21.06 11.07 36.01 3.68
2361 13042 5.923114 TGTTTTAGTGTATTACGTACGGCAA 59.077 36.000 21.06 13.32 36.01 4.52
2362 13043 5.465051 TGTTTTAGTGTATTACGTACGGCA 58.535 37.500 21.06 5.59 36.01 5.69
2363 13044 6.089417 ACTTGTTTTAGTGTATTACGTACGGC 59.911 38.462 21.06 4.80 36.01 5.68
2364 13045 7.325821 TGACTTGTTTTAGTGTATTACGTACGG 59.674 37.037 21.06 1.43 36.01 4.02
2365 13046 8.214722 TGACTTGTTTTAGTGTATTACGTACG 57.785 34.615 15.01 15.01 36.01 3.67
2366 13047 9.999883 CTTGACTTGTTTTAGTGTATTACGTAC 57.000 33.333 0.00 0.00 0.00 3.67
2367 13048 8.702438 GCTTGACTTGTTTTAGTGTATTACGTA 58.298 33.333 0.00 0.00 0.00 3.57
2368 13049 7.440255 AGCTTGACTTGTTTTAGTGTATTACGT 59.560 33.333 0.00 0.00 0.00 3.57
2369 13050 7.793902 AGCTTGACTTGTTTTAGTGTATTACG 58.206 34.615 0.00 0.00 0.00 3.18
2378 13059 7.011482 ACAACAGACTAGCTTGACTTGTTTTAG 59.989 37.037 1.04 1.71 34.29 1.85
2557 13262 8.630037 CACAAAATTCCTACAAAAACTCCTACT 58.370 33.333 0.00 0.00 0.00 2.57
2561 13266 7.865889 CCTACACAAAATTCCTACAAAAACTCC 59.134 37.037 0.00 0.00 0.00 3.85
2622 13327 8.420222 TCAGATTTCAAACTAATGGCTCAAAAA 58.580 29.630 0.00 0.00 0.00 1.94
2646 13351 1.552337 GGAGCTGAACCAGAGTCATCA 59.448 52.381 0.00 0.00 32.44 3.07
2736 13441 2.046023 TGTCGGAGGCAGGCATTG 60.046 61.111 0.00 0.00 36.97 2.82
2743 13448 4.316823 AGGACCCTGTCGGAGGCA 62.317 66.667 0.00 0.00 43.93 4.75
2754 13459 4.432741 GAGGGCTTGCCAGGACCC 62.433 72.222 14.04 0.00 43.17 4.46
2877 13582 1.784283 GCGTTGTACAACCAAACATGC 59.216 47.619 28.43 20.79 38.03 4.06
2977 13682 4.925054 TGTTAGTTAACGACCGAAAGATGG 59.075 41.667 11.12 0.00 39.00 3.51
3009 13714 3.457484 TCCGGTAGCGTGGACAAA 58.543 55.556 13.99 0.00 0.00 2.83
3090 13797 8.911965 GTGATAGATGCATATAAGGAGATCTCA 58.088 37.037 23.85 4.32 0.00 3.27
3142 13866 4.828939 TCTGAAAAATGTGATCCAGCTTGT 59.171 37.500 0.00 0.00 0.00 3.16
3255 13979 8.547069 CAAAATTAAAGTGAAAATCCTTCGCAA 58.453 29.630 1.35 0.00 0.00 4.85
3306 14030 9.733219 CCCGTTAATAGAAGTACAAAACAAAAA 57.267 29.630 0.00 0.00 0.00 1.94
3324 14048 0.039888 GTTTGCGTGCACCCGTTAAT 60.040 50.000 12.15 0.00 0.00 1.40
3344 14068 7.855904 GGTAATTGAAGCCGTCACAATATAAAG 59.144 37.037 0.00 0.00 35.39 1.85
3564 14294 2.662700 CGTGCCGTCATATTCTAGTCC 58.337 52.381 0.00 0.00 0.00 3.85
3593 14323 2.169978 AGTTAAGCATAACCCTCCGTCC 59.830 50.000 8.17 0.00 41.98 4.79
3594 14324 3.538634 AGTTAAGCATAACCCTCCGTC 57.461 47.619 8.17 0.00 41.98 4.79
3612 14342 4.207955 TGACACTATCGCTCCTATGAAGT 58.792 43.478 0.00 0.00 0.00 3.01
3616 14346 4.022849 TGTGATGACACTATCGCTCCTATG 60.023 45.833 0.00 0.00 46.07 2.23
3630 14360 1.135960 TTCACCCACCTGTGATGACA 58.864 50.000 0.00 0.00 44.27 3.58
3660 14424 2.903784 AGATGTACGGCATATGGGCTTA 59.096 45.455 4.56 0.00 38.06 3.09
3695 14459 0.526211 GCCATCTTGACGGAAAACCC 59.474 55.000 0.00 0.00 0.00 4.11
3697 14461 3.244976 CATTGCCATCTTGACGGAAAAC 58.755 45.455 0.00 0.00 0.00 2.43
3765 14529 3.476552 GATGAAAAGACGCATATCCCCA 58.523 45.455 0.00 0.00 0.00 4.96
3772 14536 1.376609 GCGGGGATGAAAAGACGCAT 61.377 55.000 0.00 0.00 45.57 4.73
3773 14537 2.038269 GCGGGGATGAAAAGACGCA 61.038 57.895 0.00 0.00 45.57 5.24
3802 14566 3.018149 TCGGGTTTTATAATGTGCCCAC 58.982 45.455 11.94 0.00 35.99 4.61
3816 14580 0.948678 CCACGAAACATGTCGGGTTT 59.051 50.000 11.16 0.00 43.04 3.27
3823 14587 2.619646 GGTGTAAACCCACGAAACATGT 59.380 45.455 0.00 0.00 36.16 3.21
3852 14616 1.683365 TTTCGGGTCCGGGGACTAG 60.683 63.158 16.86 11.24 44.04 2.57
3862 14626 1.362768 GTATTGTCGGGTTTCGGGTC 58.637 55.000 0.00 0.00 39.77 4.46
3902 14666 1.614996 ATTCATGGTTCACACGCCAA 58.385 45.000 0.00 0.00 38.38 4.52
3903 14667 1.539388 GAATTCATGGTTCACACGCCA 59.461 47.619 0.00 0.00 39.33 5.69
3965 14767 4.848562 ACATGAGCATATTTCAGCCATG 57.151 40.909 0.00 0.00 41.23 3.66
3997 14799 0.813821 GAGCACTTTTCAGCCCCATC 59.186 55.000 0.00 0.00 0.00 3.51
4081 14900 7.095607 GCACTATACAATAGTACATGGTTCAGC 60.096 40.741 0.00 0.00 31.96 4.26
4082 14901 8.144478 AGCACTATACAATAGTACATGGTTCAG 58.856 37.037 0.00 0.00 31.96 3.02
4103 14938 4.142093 ACAACTTGAGCAAATTTCAGCACT 60.142 37.500 3.62 0.00 0.00 4.40
4127 14962 5.188359 AGCAAAAGGAACATATTTCAGCCAT 59.812 36.000 0.00 0.00 0.00 4.40
4128 14963 4.527816 AGCAAAAGGAACATATTTCAGCCA 59.472 37.500 0.00 0.00 0.00 4.75
4129 14964 4.866486 CAGCAAAAGGAACATATTTCAGCC 59.134 41.667 0.00 0.00 0.00 4.85
4175 15013 7.416964 TGGGCATATTTAAGCAAACATAGTT 57.583 32.000 0.00 0.00 0.00 2.24
4216 15065 2.821378 CCCCTAAAATCGTCGGGTTTTT 59.179 45.455 12.27 9.39 34.81 1.94
4228 15077 2.312424 TTTTGCCCGTCCCCTAAAAT 57.688 45.000 0.00 0.00 0.00 1.82
4229 15078 2.083628 TTTTTGCCCGTCCCCTAAAA 57.916 45.000 0.00 0.00 0.00 1.52
4260 15109 2.592993 CCCGTCCCCATCACTGTGT 61.593 63.158 7.79 0.00 0.00 3.72
4264 15113 2.687566 GTCCCCGTCCCCATCACT 60.688 66.667 0.00 0.00 0.00 3.41
4304 15153 2.370519 GTTTTGCCTACCCAAACCCATT 59.629 45.455 0.00 0.00 34.68 3.16
4338 15187 0.322456 CTCAAGATGGCAACGGGGAA 60.322 55.000 0.00 0.00 42.51 3.97
4482 15331 8.660295 AATATCATGCCTGGTATCAATTTCAT 57.340 30.769 0.00 0.00 28.15 2.57
4483 15332 9.585369 TTAATATCATGCCTGGTATCAATTTCA 57.415 29.630 0.00 0.00 28.15 2.69
4495 15344 6.600822 CCCTCCACTAATTAATATCATGCCTG 59.399 42.308 0.00 0.00 0.00 4.85
4522 15371 7.589587 CGTTGTTCAGCATTAAACATGTTTAGA 59.410 33.333 25.62 18.13 36.52 2.10
4537 15386 0.813610 CACCACTCCGTTGTTCAGCA 60.814 55.000 0.00 0.00 0.00 4.41
4548 15397 1.968493 TCCAACTGTCTACACCACTCC 59.032 52.381 0.00 0.00 0.00 3.85
4552 15401 5.937540 CACATTTATCCAACTGTCTACACCA 59.062 40.000 0.00 0.00 0.00 4.17
4562 15411 6.015918 TCCATTCAACCACATTTATCCAACT 58.984 36.000 0.00 0.00 0.00 3.16
4575 15424 9.645128 ATCTAACATATTTCATCCATTCAACCA 57.355 29.630 0.00 0.00 0.00 3.67
4583 15432 7.738847 TGCAGAGATCTAACATATTTCATCCA 58.261 34.615 0.00 0.00 0.00 3.41
4593 15442 3.452474 GCGAGTTGCAGAGATCTAACAT 58.548 45.455 8.44 0.00 45.45 2.71
4653 15502 6.921412 TGTATCTCATATGGGTGGGAAAAAT 58.079 36.000 1.67 0.00 31.19 1.82
4681 15530 9.971922 CTGACAAGTGTCTGATATGTCAATATA 57.028 33.333 12.43 0.00 46.74 0.86
4684 15533 5.583854 GCTGACAAGTGTCTGATATGTCAAT 59.416 40.000 19.05 0.00 46.74 2.57
4685 15534 4.931601 GCTGACAAGTGTCTGATATGTCAA 59.068 41.667 19.05 0.00 46.74 3.18
4768 15617 1.121378 TTTCTACACCCGTCACACCA 58.879 50.000 0.00 0.00 0.00 4.17
5156 16005 2.916355 TGGATCCTCCAGCACCTAC 58.084 57.895 14.23 0.00 42.67 3.18
5188 16037 0.863799 CCAGAATGATGTGCCGATCG 59.136 55.000 8.51 8.51 39.69 3.69
5252 16110 6.176896 TCCGATTTCATTTGTTGATGGACTA 58.823 36.000 0.00 0.00 33.34 2.59
5267 16125 0.035820 CCTCCCCGTTTCCGATTTCA 60.036 55.000 0.00 0.00 35.63 2.69
5272 16130 0.967380 GTCTACCTCCCCGTTTCCGA 60.967 60.000 0.00 0.00 35.63 4.55
5273 16131 1.252904 TGTCTACCTCCCCGTTTCCG 61.253 60.000 0.00 0.00 0.00 4.30
5274 16132 1.138464 GATGTCTACCTCCCCGTTTCC 59.862 57.143 0.00 0.00 0.00 3.13
5276 16134 0.822164 CGATGTCTACCTCCCCGTTT 59.178 55.000 0.00 0.00 0.00 3.60
5291 16149 0.982673 GGTCTTCGAACACGACGATG 59.017 55.000 0.00 0.00 39.45 3.84
5331 16189 2.038659 GCCTAGCTCAGAGATGAACCT 58.961 52.381 0.00 0.00 0.00 3.50
5357 16215 2.181777 GCGTCGGACATGCTCTCA 59.818 61.111 9.10 0.00 33.71 3.27
5458 16316 2.445145 TCAAAGGACCTTTCCATGACCA 59.555 45.455 16.91 0.00 45.72 4.02
5521 16379 7.726216 AGTGATGGTGTTATCATCGATTCTTA 58.274 34.615 0.00 0.00 42.73 2.10
5635 16493 1.961793 CAACTTTTGTGACTCCCCGA 58.038 50.000 0.00 0.00 0.00 5.14
5740 16622 0.539051 CTCATTGAGCTTCTCCCGGT 59.461 55.000 0.00 0.00 0.00 5.28
5914 16797 5.984926 CCTTTGCTCTAGCTCTTTGAGATAG 59.015 44.000 12.12 12.12 46.27 2.08
6016 16899 9.877178 GTTGATAGTTTGATCTTCTTCCTTCTA 57.123 33.333 0.00 0.00 0.00 2.10
6017 16900 8.601546 AGTTGATAGTTTGATCTTCTTCCTTCT 58.398 33.333 0.00 0.00 0.00 2.85
6124 17007 3.118261 GCACCTCCAAGATCACCTCATTA 60.118 47.826 0.00 0.00 0.00 1.90
6127 17010 0.615331 GCACCTCCAAGATCACCTCA 59.385 55.000 0.00 0.00 0.00 3.86
6195 17078 1.653151 GATGTCCAAACGTAGGCTCC 58.347 55.000 0.00 0.00 0.00 4.70
6202 17085 3.509388 GGAGACGATGTCCAAACGT 57.491 52.632 0.00 0.00 42.84 3.99
6285 17168 1.279271 CCTTAGAAGGTGGTGGTGAGG 59.721 57.143 0.00 0.00 41.41 3.86
6385 17268 4.688419 CAGCCGCAACCTGCAACG 62.688 66.667 0.00 0.00 45.36 4.10
6409 17292 0.392998 CATCCCAGGTGCCACAGTAC 60.393 60.000 0.00 0.00 0.00 2.73
6440 17323 4.518249 GGTTGCCTATAGCTTTCTGAAGT 58.482 43.478 0.00 0.00 44.23 3.01
6476 17359 4.142600 GGTGTCAGGTCATGCTTTTGATAC 60.143 45.833 0.00 0.00 31.61 2.24
6493 17376 0.826256 ACCACGCTCTACTGGTGTCA 60.826 55.000 0.00 0.00 39.44 3.58
6522 17405 7.097192 TCTGAAGAACATAACCATCAGTGTAC 58.903 38.462 0.00 0.00 36.54 2.90
6595 17478 9.263538 ACTTTGTCATCGTGTACAAATAAAGTA 57.736 29.630 0.00 0.00 42.81 2.24
6600 17483 5.467063 TGCACTTTGTCATCGTGTACAAATA 59.533 36.000 0.00 0.00 42.81 1.40
6937 17826 0.596082 AATGTGTTTGCCGCCAGTAC 59.404 50.000 0.00 0.00 0.00 2.73
6959 17848 1.940613 GCAACGAGTTGTCTCCTTGTT 59.059 47.619 16.14 0.00 42.31 2.83
7010 17899 0.537371 CTGGGAGAAACGGCCAAACT 60.537 55.000 2.24 0.00 0.00 2.66
7036 17925 1.007238 TCGGAGGGAGGTCTGATTCTT 59.993 52.381 0.00 0.00 0.00 2.52
7112 18002 7.027161 CCCATAATTTTCTGACAAACCTAACG 58.973 38.462 0.00 0.00 0.00 3.18
7178 18068 4.837860 TCTATTCAATGGCACCACCTTTTT 59.162 37.500 0.00 0.00 40.22 1.94
7179 18069 4.415596 TCTATTCAATGGCACCACCTTTT 58.584 39.130 0.00 0.00 40.22 2.27
7180 18070 4.046286 TCTATTCAATGGCACCACCTTT 57.954 40.909 0.00 0.00 40.22 3.11
7181 18071 3.737559 TCTATTCAATGGCACCACCTT 57.262 42.857 0.00 0.00 40.22 3.50
7226 18129 3.259374 GTGTCTTGGGTGATGAGAGAGAA 59.741 47.826 0.00 0.00 0.00 2.87
7235 18155 5.441718 ACATGATAAGTGTCTTGGGTGAT 57.558 39.130 0.00 0.00 0.00 3.06
7303 18238 3.287222 TGGTCCTCCAAAACTTTGACAG 58.713 45.455 3.72 0.10 41.25 3.51
7397 18332 0.458025 GAGTCGGACATTCGGTGGTC 60.458 60.000 11.27 0.00 0.00 4.02
7454 18389 0.324943 ACGTACATTGCAGGAAGGCT 59.675 50.000 0.00 0.00 34.04 4.58
7456 18391 2.422597 TGAACGTACATTGCAGGAAGG 58.577 47.619 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.