Multiple sequence alignment - TraesCS2D01G575000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G575000 chr2D 100.000 6152 0 0 425 6576 639364760 639358609 0.000000e+00 11361.0
1 TraesCS2D01G575000 chr2D 94.240 3403 133 23 2213 5607 639137839 639134492 0.000000e+00 5140.0
2 TraesCS2D01G575000 chr2D 81.770 2474 373 53 2950 5400 638864278 638861860 0.000000e+00 1999.0
3 TraesCS2D01G575000 chr2D 86.336 1493 172 23 2950 4429 639278726 639277253 0.000000e+00 1598.0
4 TraesCS2D01G575000 chr2D 86.764 1375 160 15 3060 4429 639090090 639088733 0.000000e+00 1511.0
5 TraesCS2D01G575000 chr2D 90.252 872 77 4 1077 1947 638876110 638875246 0.000000e+00 1133.0
6 TraesCS2D01G575000 chr2D 91.754 764 37 11 5630 6374 639134503 639133747 0.000000e+00 1038.0
7 TraesCS2D01G575000 chr2D 86.591 880 106 3 1076 1949 639148128 639147255 0.000000e+00 961.0
8 TraesCS2D01G575000 chr2D 86.580 842 100 8 1122 1959 639279723 639278891 0.000000e+00 917.0
9 TraesCS2D01G575000 chr2D 88.319 702 49 15 5630 6311 639087525 639086837 0.000000e+00 811.0
10 TraesCS2D01G575000 chr2D 81.243 949 133 29 4470 5400 639277101 639276180 0.000000e+00 725.0
11 TraesCS2D01G575000 chr2D 79.388 883 149 17 1080 1950 639092543 639091682 5.680000e-165 592.0
12 TraesCS2D01G575000 chr2D 92.617 298 19 3 5630 5926 639276054 639275759 6.090000e-115 425.0
13 TraesCS2D01G575000 chr2D 88.724 337 35 3 5640 5975 639151606 639151272 6.140000e-110 409.0
14 TraesCS2D01G575000 chr2D 97.630 211 5 0 6366 6576 639130633 639130423 4.850000e-96 363.0
15 TraesCS2D01G575000 chr2D 93.145 248 5 3 1945 2185 639138617 639138375 2.920000e-93 353.0
16 TraesCS2D01G575000 chr2D 100.000 86 0 0 1 86 639365184 639365099 6.830000e-35 159.0
17 TraesCS2D01G575000 chr2D 90.244 82 8 0 5907 5988 639275749 639275668 2.510000e-19 108.0
18 TraesCS2D01G575000 chr2D 97.368 38 1 0 2185 2222 639138218 639138181 1.530000e-06 65.8
19 TraesCS2D01G575000 chr2D 92.857 42 3 0 918 959 639092646 639092605 1.980000e-05 62.1
20 TraesCS2D01G575000 chr2B 86.383 2306 252 43 2973 5260 798193162 798190901 0.000000e+00 2462.0
21 TraesCS2D01G575000 chr2B 94.355 1488 73 9 701 2185 798195746 798194267 0.000000e+00 2272.0
22 TraesCS2D01G575000 chr2B 83.066 2244 320 43 2950 5174 798226625 798224423 0.000000e+00 1984.0
23 TraesCS2D01G575000 chr2B 82.016 2391 341 53 3060 5399 798156874 798154522 0.000000e+00 1951.0
24 TraesCS2D01G575000 chr2B 82.138 2329 352 46 2950 5260 798331131 798328849 0.000000e+00 1938.0
25 TraesCS2D01G575000 chr2B 84.074 1193 152 22 763 1945 798159538 798158374 0.000000e+00 1116.0
26 TraesCS2D01G575000 chr2B 94.181 653 25 7 2215 2862 798194065 798193421 0.000000e+00 983.0
27 TraesCS2D01G575000 chr2B 91.532 555 17 7 436 969 798257176 798256631 0.000000e+00 737.0
28 TraesCS2D01G575000 chr2B 91.532 555 17 7 436 969 798266954 798266409 0.000000e+00 737.0
29 TraesCS2D01G575000 chr2B 88.245 604 59 6 1350 1947 798236137 798235540 0.000000e+00 712.0
30 TraesCS2D01G575000 chr2B 94.502 291 15 1 1018 1307 798256646 798256356 1.300000e-121 448.0
31 TraesCS2D01G575000 chr2B 94.502 291 15 1 1018 1307 798266424 798266134 1.300000e-121 448.0
32 TraesCS2D01G575000 chr2B 89.205 352 33 3 5630 5978 798154370 798154021 1.010000e-117 435.0
33 TraesCS2D01G575000 chr2B 87.017 362 41 6 5630 5988 798184053 798183695 2.860000e-108 403.0
34 TraesCS2D01G575000 chr2B 83.575 414 54 7 1076 1478 798338748 798338338 6.230000e-100 375.0
35 TraesCS2D01G575000 chr2B 87.692 325 34 5 5650 5970 798357657 798357335 2.240000e-99 374.0
36 TraesCS2D01G575000 chr2B 86.341 205 18 7 5630 5825 798328633 798328430 1.440000e-51 215.0
37 TraesCS2D01G575000 chr2B 84.783 92 4 2 5 86 798257523 798257432 4.230000e-12 84.2
38 TraesCS2D01G575000 chr2B 84.783 92 4 2 5 86 798267301 798267210 4.230000e-12 84.2
39 TraesCS2D01G575000 chr2B 94.872 39 2 0 977 1015 610020598 610020636 1.980000e-05 62.1
40 TraesCS2D01G575000 chr2A 82.270 2397 339 55 3060 5400 764725879 764723513 0.000000e+00 1993.0
41 TraesCS2D01G575000 chr2A 84.365 1260 156 22 704 1950 764728902 764727671 0.000000e+00 1197.0
42 TraesCS2D01G575000 chr2A 88.451 355 34 4 5630 5981 764723362 764723012 7.880000e-114 422.0
43 TraesCS2D01G575000 chr2A 77.778 216 31 6 5409 5607 764723566 764723351 4.170000e-22 117.0
44 TraesCS2D01G575000 chr6A 77.857 140 29 2 1684 1822 4596939 4596801 1.170000e-12 86.1
45 TraesCS2D01G575000 chr7A 95.000 40 2 0 977 1016 705502268 705502307 5.500000e-06 63.9
46 TraesCS2D01G575000 chr7A 100.000 32 0 0 985 1016 67682643 67682674 7.120000e-05 60.2
47 TraesCS2D01G575000 chr6D 97.297 37 1 0 980 1016 320198087 320198051 5.500000e-06 63.9
48 TraesCS2D01G575000 chr7D 92.500 40 3 0 977 1016 613714901 613714940 2.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G575000 chr2D 639358609 639365184 6575 True 5760.000000 11361 100.000000 1 6576 2 chr2D.!!$R7 6575
1 TraesCS2D01G575000 chr2D 638861860 638864278 2418 True 1999.000000 1999 81.770000 2950 5400 1 chr2D.!!$R1 2450
2 TraesCS2D01G575000 chr2D 639130423 639138617 8194 True 1391.960000 5140 94.827400 1945 6576 5 chr2D.!!$R4 4631
3 TraesCS2D01G575000 chr2D 638875246 638876110 864 True 1133.000000 1133 90.252000 1077 1947 1 chr2D.!!$R2 870
4 TraesCS2D01G575000 chr2D 639275668 639279723 4055 True 754.600000 1598 87.404000 1122 5988 5 chr2D.!!$R6 4866
5 TraesCS2D01G575000 chr2D 639086837 639092646 5809 True 744.025000 1511 86.832000 918 6311 4 chr2D.!!$R3 5393
6 TraesCS2D01G575000 chr2D 639147255 639151606 4351 True 685.000000 961 87.657500 1076 5975 2 chr2D.!!$R5 4899
7 TraesCS2D01G575000 chr2B 798224423 798226625 2202 True 1984.000000 1984 83.066000 2950 5174 1 chr2B.!!$R2 2224
8 TraesCS2D01G575000 chr2B 798190901 798195746 4845 True 1905.666667 2462 91.639667 701 5260 3 chr2B.!!$R7 4559
9 TraesCS2D01G575000 chr2B 798154021 798159538 5517 True 1167.333333 1951 85.098333 763 5978 3 chr2B.!!$R6 5215
10 TraesCS2D01G575000 chr2B 798328430 798331131 2701 True 1076.500000 1938 84.239500 2950 5825 2 chr2B.!!$R10 2875
11 TraesCS2D01G575000 chr2B 798235540 798236137 597 True 712.000000 712 88.245000 1350 1947 1 chr2B.!!$R3 597
12 TraesCS2D01G575000 chr2B 798256356 798257523 1167 True 423.066667 737 90.272333 5 1307 3 chr2B.!!$R8 1302
13 TraesCS2D01G575000 chr2B 798266134 798267301 1167 True 423.066667 737 90.272333 5 1307 3 chr2B.!!$R9 1302
14 TraesCS2D01G575000 chr2A 764723012 764728902 5890 True 932.250000 1993 83.216000 704 5981 4 chr2A.!!$R1 5277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 49 1.067250 GTGAGCAGAGGAGGATCGC 59.933 63.158 0.00 0.0 34.37 4.58 F
1375 3785 0.249868 CTCTCCTGGTGCGTGTTGAA 60.250 55.000 0.00 0.0 0.00 2.69 F
1668 4090 0.396435 AAGATCAGTGACGGCAACCA 59.604 50.000 0.00 0.0 0.00 3.67 F
1932 4354 2.233676 TGCTAGTCCGAGAATTGCTTCA 59.766 45.455 8.52 0.0 30.85 3.02 F
3016 6576 1.423541 ACACCACCCATTGCTCAAGTA 59.576 47.619 0.00 0.0 0.00 2.24 F
3716 7315 2.715046 TGAAACTGATAGCCTGCTTGG 58.285 47.619 0.00 0.0 39.35 3.61 F
4902 8619 0.033366 GCCAATGGTTCAACGCCTTT 59.967 50.000 0.00 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 4090 0.745845 GAGATGCGCCTTGGACACAT 60.746 55.000 4.18 0.00 0.00 3.21 R
2941 6499 0.179140 GCTGGGTGTTTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82 R
2944 6502 0.396974 ATGGCTGGGTGTTTGTGTGT 60.397 50.000 0.00 0.00 0.00 3.72 R
3883 7485 1.303643 CCAAAGGTGTGCCTCCCTC 60.304 63.158 0.00 0.00 46.33 4.30 R
4449 8055 1.239296 ACCGTTGTCAGATCGTCCGA 61.239 55.000 0.00 0.00 0.00 4.55 R
5504 9329 0.613260 ACATGCAACTAGGGCGAGAA 59.387 50.000 0.00 0.00 0.00 2.87 R
6016 9907 0.458669 CCTTAAAGCAGCAGCCATGG 59.541 55.000 7.63 7.63 43.56 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 47 1.739049 CCGTGAGCAGAGGAGGATC 59.261 63.158 0.00 0.00 0.00 3.36
40 49 1.067250 GTGAGCAGAGGAGGATCGC 59.933 63.158 0.00 0.00 34.37 4.58
51 60 3.224324 GGATCGCGCTACCCCTCA 61.224 66.667 5.56 0.00 0.00 3.86
56 65 1.079405 CGCGCTACCCCTCAAAAGA 60.079 57.895 5.56 0.00 0.00 2.52
477 651 2.552315 CTGTACCATTCTTTTGGCGTGT 59.448 45.455 0.00 0.00 40.68 4.49
556 730 8.784043 ACTACACCTTCAAAAATTGTACTCATC 58.216 33.333 0.00 0.00 0.00 2.92
557 731 7.581213 ACACCTTCAAAAATTGTACTCATCA 57.419 32.000 0.00 0.00 0.00 3.07
560 734 9.559958 CACCTTCAAAAATTGTACTCATCATAC 57.440 33.333 0.00 0.00 0.00 2.39
561 735 9.520515 ACCTTCAAAAATTGTACTCATCATACT 57.479 29.630 0.00 0.00 0.00 2.12
639 813 6.201615 GGATTAGTTATAGTTGGTTGCCGTAC 59.798 42.308 0.00 0.00 0.00 3.67
721 915 5.111989 CGAACCAAGAGAGCAAGATTGATA 58.888 41.667 0.00 0.00 0.00 2.15
956 1152 8.980481 TTTGTGATATCTCTTTATTCCCCTTC 57.020 34.615 3.98 0.00 0.00 3.46
973 1172 6.433441 TCCCCTTCTACTAGTCTCTTAAAGG 58.567 44.000 0.00 4.95 33.41 3.11
978 1177 9.810545 CCTTCTACTAGTCTCTTAAAGGAAATG 57.189 37.037 0.00 0.00 35.17 2.32
1074 1274 7.230747 TCTTTTCTTGTGGTATTCAGATCCAA 58.769 34.615 0.00 0.00 32.82 3.53
1253 3663 2.051334 TATTATGCGTGCTGCCCTTT 57.949 45.000 0.00 0.00 45.60 3.11
1285 3695 2.510238 GTGCCGCGAGATCAGCTT 60.510 61.111 8.23 0.00 0.00 3.74
1309 3719 2.749076 CGATCAGATCAAGTTTTGGGCA 59.251 45.455 11.12 0.00 0.00 5.36
1375 3785 0.249868 CTCTCCTGGTGCGTGTTGAA 60.250 55.000 0.00 0.00 0.00 2.69
1436 3852 3.355378 CTCATGGCCAAGATGGTAAACA 58.645 45.455 10.96 0.00 40.46 2.83
1637 4059 2.172717 GGCCTAGATAAAGCAAGGGACA 59.827 50.000 0.00 0.00 0.00 4.02
1664 4086 1.618343 TCAAGAAGATCAGTGACGGCA 59.382 47.619 0.00 0.00 0.00 5.69
1668 4090 0.396435 AAGATCAGTGACGGCAACCA 59.604 50.000 0.00 0.00 0.00 3.67
1699 4121 2.315011 GCGCATCTCAAGATACTCTCG 58.685 52.381 0.30 0.00 32.63 4.04
1932 4354 2.233676 TGCTAGTCCGAGAATTGCTTCA 59.766 45.455 8.52 0.00 30.85 3.02
1950 4372 4.031426 GCTTCACGATAAAAGGTACGTCAG 59.969 45.833 0.00 0.00 36.86 3.51
2034 4509 6.814954 TCCCTAGACATCTAAGCAATTTCT 57.185 37.500 0.00 0.00 0.00 2.52
2193 5076 7.661536 AGTTCATTAGATAAGGTGACTGCTA 57.338 36.000 0.00 0.00 42.68 3.49
2253 5492 9.663904 CCGTATTTTGTGATTGTATTTGATAGG 57.336 33.333 0.00 0.00 0.00 2.57
2567 5831 9.748708 ATATTTGTTTTCATGGACATAAATCCG 57.251 29.630 0.00 0.00 42.24 4.18
2795 6074 6.471519 CGTACTACACTAGGTGTAATTGCTTC 59.528 42.308 10.96 0.00 46.35 3.86
2880 6159 8.634444 AGTGTTGCCTTTTTACATTTGTATACA 58.366 29.630 0.08 0.08 0.00 2.29
3016 6576 1.423541 ACACCACCCATTGCTCAAGTA 59.576 47.619 0.00 0.00 0.00 2.24
3035 6600 5.394224 AGTAGTAGCAACAGACCTCTTTC 57.606 43.478 0.00 0.00 0.00 2.62
3036 6601 4.833380 AGTAGTAGCAACAGACCTCTTTCA 59.167 41.667 0.00 0.00 0.00 2.69
3320 6892 3.638627 ACATCTCTCTTATGATGACGCCA 59.361 43.478 9.54 0.00 41.69 5.69
3716 7315 2.715046 TGAAACTGATAGCCTGCTTGG 58.285 47.619 0.00 0.00 39.35 3.61
4442 8048 3.390967 TCGCCTTTATCTGGAATGGATGA 59.609 43.478 0.00 0.00 0.00 2.92
4449 8055 3.981071 TCTGGAATGGATGAAGTCGTT 57.019 42.857 0.00 0.00 0.00 3.85
4515 8232 3.302365 ACATGCAAAAATTCGGGAGTG 57.698 42.857 0.00 0.00 0.00 3.51
4691 8408 7.607991 CACCTTGATCTAACAACTAACAGGAAT 59.392 37.037 0.00 0.00 0.00 3.01
4902 8619 0.033366 GCCAATGGTTCAACGCCTTT 59.967 50.000 0.00 0.00 0.00 3.11
4914 8631 1.301401 CGCCTTTGGTTCGGTCTCA 60.301 57.895 0.00 0.00 0.00 3.27
5062 8779 2.025981 TGCTGAGGTATTTGGCAGATGT 60.026 45.455 0.00 0.00 0.00 3.06
5377 9136 5.894807 GCAATATGCACTGTATTTGGTTCT 58.105 37.500 0.00 0.00 44.26 3.01
5378 9137 6.332630 GCAATATGCACTGTATTTGGTTCTT 58.667 36.000 0.00 0.00 44.26 2.52
5379 9138 6.813152 GCAATATGCACTGTATTTGGTTCTTT 59.187 34.615 0.00 0.00 44.26 2.52
5380 9139 7.201461 GCAATATGCACTGTATTTGGTTCTTTG 60.201 37.037 0.00 0.00 44.26 2.77
5381 9140 5.789643 ATGCACTGTATTTGGTTCTTTGT 57.210 34.783 0.00 0.00 0.00 2.83
5382 9141 5.181690 TGCACTGTATTTGGTTCTTTGTC 57.818 39.130 0.00 0.00 0.00 3.18
5383 9142 4.887071 TGCACTGTATTTGGTTCTTTGTCT 59.113 37.500 0.00 0.00 0.00 3.41
5384 9143 5.008613 TGCACTGTATTTGGTTCTTTGTCTC 59.991 40.000 0.00 0.00 0.00 3.36
5385 9144 5.239525 GCACTGTATTTGGTTCTTTGTCTCT 59.760 40.000 0.00 0.00 0.00 3.10
5386 9145 6.662616 CACTGTATTTGGTTCTTTGTCTCTG 58.337 40.000 0.00 0.00 0.00 3.35
5387 9146 5.239525 ACTGTATTTGGTTCTTTGTCTCTGC 59.760 40.000 0.00 0.00 0.00 4.26
5388 9147 4.518970 TGTATTTGGTTCTTTGTCTCTGCC 59.481 41.667 0.00 0.00 0.00 4.85
5389 9148 3.297134 TTTGGTTCTTTGTCTCTGCCT 57.703 42.857 0.00 0.00 0.00 4.75
5390 9149 3.297134 TTGGTTCTTTGTCTCTGCCTT 57.703 42.857 0.00 0.00 0.00 4.35
5391 9150 3.297134 TGGTTCTTTGTCTCTGCCTTT 57.703 42.857 0.00 0.00 0.00 3.11
5392 9151 2.951642 TGGTTCTTTGTCTCTGCCTTTG 59.048 45.455 0.00 0.00 0.00 2.77
5393 9152 3.214328 GGTTCTTTGTCTCTGCCTTTGA 58.786 45.455 0.00 0.00 0.00 2.69
5394 9153 3.823304 GGTTCTTTGTCTCTGCCTTTGAT 59.177 43.478 0.00 0.00 0.00 2.57
5395 9154 4.279420 GGTTCTTTGTCTCTGCCTTTGATT 59.721 41.667 0.00 0.00 0.00 2.57
5396 9155 5.221322 GGTTCTTTGTCTCTGCCTTTGATTT 60.221 40.000 0.00 0.00 0.00 2.17
5397 9156 5.695851 TCTTTGTCTCTGCCTTTGATTTC 57.304 39.130 0.00 0.00 0.00 2.17
5398 9157 5.132502 TCTTTGTCTCTGCCTTTGATTTCA 58.867 37.500 0.00 0.00 0.00 2.69
5399 9158 5.240183 TCTTTGTCTCTGCCTTTGATTTCAG 59.760 40.000 0.00 0.00 0.00 3.02
5400 9159 4.090761 TGTCTCTGCCTTTGATTTCAGT 57.909 40.909 0.00 0.00 0.00 3.41
5401 9160 4.067896 TGTCTCTGCCTTTGATTTCAGTC 58.932 43.478 0.00 0.00 0.00 3.51
5402 9161 4.067896 GTCTCTGCCTTTGATTTCAGTCA 58.932 43.478 0.00 0.00 0.00 3.41
5403 9162 4.153835 GTCTCTGCCTTTGATTTCAGTCAG 59.846 45.833 0.00 0.00 0.00 3.51
5404 9163 3.415212 TCTGCCTTTGATTTCAGTCAGG 58.585 45.455 0.00 0.00 0.00 3.86
5405 9164 3.072915 TCTGCCTTTGATTTCAGTCAGGA 59.927 43.478 6.68 0.00 0.00 3.86
5406 9165 4.015084 CTGCCTTTGATTTCAGTCAGGAT 58.985 43.478 6.68 0.00 0.00 3.24
5407 9166 4.410099 TGCCTTTGATTTCAGTCAGGATT 58.590 39.130 6.68 0.00 0.00 3.01
5408 9167 4.834496 TGCCTTTGATTTCAGTCAGGATTT 59.166 37.500 6.68 0.00 0.00 2.17
5409 9168 5.305128 TGCCTTTGATTTCAGTCAGGATTTT 59.695 36.000 6.68 0.00 0.00 1.82
5410 9169 5.866092 GCCTTTGATTTCAGTCAGGATTTTC 59.134 40.000 6.68 0.00 0.00 2.29
5411 9170 6.294955 GCCTTTGATTTCAGTCAGGATTTTCT 60.295 38.462 6.68 0.00 0.00 2.52
5412 9171 7.664758 CCTTTGATTTCAGTCAGGATTTTCTT 58.335 34.615 0.00 0.00 0.00 2.52
5413 9172 7.811713 CCTTTGATTTCAGTCAGGATTTTCTTC 59.188 37.037 0.00 0.00 0.00 2.87
5469 9290 2.751806 GCCTTTGATTTCAGCTAGCAGT 59.248 45.455 18.83 0.00 0.00 4.40
5484 9305 0.645868 GCAGTAGGTGATTTCGTCGC 59.354 55.000 0.00 0.00 36.60 5.19
5491 9312 1.743623 TGATTTCGTCGCCGGCATT 60.744 52.632 28.98 2.04 33.95 3.56
5503 9328 2.072298 GCCGGCATTGACTCTATCATC 58.928 52.381 24.80 0.00 37.11 2.92
5504 9329 2.289320 GCCGGCATTGACTCTATCATCT 60.289 50.000 24.80 0.00 37.11 2.90
5505 9330 3.805108 GCCGGCATTGACTCTATCATCTT 60.805 47.826 24.80 0.00 37.11 2.40
5508 9346 4.922692 CGGCATTGACTCTATCATCTTCTC 59.077 45.833 0.00 0.00 37.11 2.87
5513 9351 3.153919 GACTCTATCATCTTCTCGCCCT 58.846 50.000 0.00 0.00 0.00 5.19
5523 9361 0.613260 TTCTCGCCCTAGTTGCATGT 59.387 50.000 0.00 0.00 0.00 3.21
5527 9365 3.006940 CTCGCCCTAGTTGCATGTTTTA 58.993 45.455 0.00 0.00 0.00 1.52
5529 9367 2.097466 CGCCCTAGTTGCATGTTTTAGG 59.903 50.000 0.00 1.55 0.00 2.69
5533 9371 3.378427 CCTAGTTGCATGTTTTAGGGCTC 59.622 47.826 0.00 0.00 0.00 4.70
5555 9393 5.809001 TCCTGCATCTTCAGTTTATGTTCT 58.191 37.500 0.00 0.00 32.32 3.01
5593 9435 7.333528 AGATAAACTTCTGTGTGCTTTTGAA 57.666 32.000 0.00 0.00 0.00 2.69
5607 9449 8.690840 GTGTGCTTTTGAATGTACTGTTTATTC 58.309 33.333 0.00 8.77 0.00 1.75
5608 9450 7.865385 TGTGCTTTTGAATGTACTGTTTATTCC 59.135 33.333 11.62 1.41 31.47 3.01
5609 9451 7.328493 GTGCTTTTGAATGTACTGTTTATTCCC 59.672 37.037 11.62 0.00 31.47 3.97
5610 9452 6.811665 GCTTTTGAATGTACTGTTTATTCCCC 59.188 38.462 11.62 0.00 31.47 4.81
5612 9454 3.942748 TGAATGTACTGTTTATTCCCCGC 59.057 43.478 11.62 0.00 31.47 6.13
5614 9456 3.420300 TGTACTGTTTATTCCCCGCAA 57.580 42.857 0.00 0.00 0.00 4.85
5615 9457 3.752665 TGTACTGTTTATTCCCCGCAAA 58.247 40.909 0.00 0.00 0.00 3.68
5616 9458 4.142790 TGTACTGTTTATTCCCCGCAAAA 58.857 39.130 0.00 0.00 0.00 2.44
5617 9459 3.653539 ACTGTTTATTCCCCGCAAAAC 57.346 42.857 0.00 0.00 33.46 2.43
5618 9460 2.959707 ACTGTTTATTCCCCGCAAAACA 59.040 40.909 0.00 0.00 38.97 2.83
5619 9461 3.385111 ACTGTTTATTCCCCGCAAAACAA 59.615 39.130 0.00 0.00 40.28 2.83
5620 9462 4.141914 ACTGTTTATTCCCCGCAAAACAAA 60.142 37.500 0.00 0.00 40.28 2.83
5621 9463 4.766375 TGTTTATTCCCCGCAAAACAAAA 58.234 34.783 0.00 0.00 38.50 2.44
5622 9464 4.571176 TGTTTATTCCCCGCAAAACAAAAC 59.429 37.500 0.00 0.00 38.50 2.43
5623 9465 2.990066 ATTCCCCGCAAAACAAAACA 57.010 40.000 0.00 0.00 0.00 2.83
5624 9466 2.762535 TTCCCCGCAAAACAAAACAA 57.237 40.000 0.00 0.00 0.00 2.83
5625 9467 2.762535 TCCCCGCAAAACAAAACAAA 57.237 40.000 0.00 0.00 0.00 2.83
5626 9468 3.053831 TCCCCGCAAAACAAAACAAAA 57.946 38.095 0.00 0.00 0.00 2.44
5627 9469 3.408634 TCCCCGCAAAACAAAACAAAAA 58.591 36.364 0.00 0.00 0.00 1.94
5628 9470 3.188667 TCCCCGCAAAACAAAACAAAAAC 59.811 39.130 0.00 0.00 0.00 2.43
5629 9471 3.156753 CCCGCAAAACAAAACAAAAACG 58.843 40.909 0.00 0.00 0.00 3.60
5630 9472 3.364068 CCCGCAAAACAAAACAAAAACGT 60.364 39.130 0.00 0.00 0.00 3.99
5631 9473 4.143179 CCCGCAAAACAAAACAAAAACGTA 60.143 37.500 0.00 0.00 0.00 3.57
5632 9474 4.777030 CCGCAAAACAAAACAAAAACGTAC 59.223 37.500 0.00 0.00 0.00 3.67
5633 9475 5.388578 CCGCAAAACAAAACAAAAACGTACT 60.389 36.000 0.00 0.00 0.00 2.73
5634 9476 6.065781 CGCAAAACAAAACAAAAACGTACTT 58.934 32.000 0.00 0.00 0.00 2.24
5648 9490 9.403869 CAAAAACGTACTTTTTATTTGCTGAAC 57.596 29.630 10.16 0.00 39.61 3.18
5700 9544 3.124686 TGGTGCGCCAGGTTTTTC 58.875 55.556 16.89 0.00 40.46 2.29
5724 9568 2.241176 CCCTTAGGTTATGTTCCCAGCA 59.759 50.000 0.00 0.00 0.00 4.41
5902 9748 4.748701 TCTAGGGTCCTCAGTTTTACTGT 58.251 43.478 6.71 0.00 46.03 3.55
5910 9785 5.467063 GTCCTCAGTTTTACTGTCTGAAAGG 59.533 44.000 6.71 5.46 46.03 3.11
5936 9811 5.185635 AGCTAGCTCATGATGAACTATCCTC 59.814 44.000 12.68 0.00 34.77 3.71
5969 9844 7.938140 TTCCTTCCAAATGAGTAGTTTATGG 57.062 36.000 0.00 0.00 0.00 2.74
5971 9846 7.110155 TCCTTCCAAATGAGTAGTTTATGGTC 58.890 38.462 0.00 0.00 0.00 4.02
5992 9867 7.739498 GGTCTACAACCTCACTTTTTAATGA 57.261 36.000 0.00 0.00 45.45 2.57
6005 9896 0.459489 TTAATGATTTGCCTGGCGCC 59.541 50.000 22.73 22.73 36.24 6.53
6044 9935 3.545703 TGCTGCTTTAAGGCTCCTTATC 58.454 45.455 11.19 3.55 38.20 1.75
6247 10138 9.466497 TTTTACATTAAGATCTCAAGCAGGAAT 57.534 29.630 0.00 0.00 0.00 3.01
6344 10235 7.612244 ACTTCAGCTTAGTCTAATACAGAGTCA 59.388 37.037 0.00 0.00 38.03 3.41
6345 10236 7.323049 TCAGCTTAGTCTAATACAGAGTCAC 57.677 40.000 0.00 0.00 38.03 3.67
6439 13452 8.186821 CACAAAAGAATCTTCCCATATCTGAAC 58.813 37.037 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.701604 CTGCGACCCTGCCGAGTAC 62.702 68.421 0.00 0.00 0.00 2.73
38 47 0.672401 TTCTTTTGAGGGGTAGCGCG 60.672 55.000 0.00 0.00 0.00 6.86
40 49 3.408634 TCTTTTCTTTTGAGGGGTAGCG 58.591 45.455 0.00 0.00 0.00 4.26
477 651 4.452795 TCGATTTGTCTTGCCGTGAAATTA 59.547 37.500 0.00 0.00 0.00 1.40
956 1152 9.575783 GTCACATTTCCTTTAAGAGACTAGTAG 57.424 37.037 0.00 0.00 0.00 2.57
973 1172 8.275632 GGTTAGCAAAATCAAAAGTCACATTTC 58.724 33.333 0.00 0.00 0.00 2.17
978 1177 6.039616 TGTGGTTAGCAAAATCAAAAGTCAC 58.960 36.000 0.00 0.00 0.00 3.67
1253 3663 2.113774 CACCTCTGCCACCTTGCA 59.886 61.111 0.00 0.00 39.37 4.08
1285 3695 4.002982 CCCAAAACTTGATCTGATCGTCA 58.997 43.478 12.65 0.00 0.00 4.35
1309 3719 4.851639 AGACAGCTCCCTAACATCATTT 57.148 40.909 0.00 0.00 0.00 2.32
1436 3852 3.306019 CGAGCCTTGCCCTTTTTAAACAT 60.306 43.478 0.00 0.00 0.00 2.71
1637 4059 7.386299 GCCGTCACTGATCTTCTTGATAATATT 59.614 37.037 0.00 0.00 35.14 1.28
1664 4086 2.268076 GCGCCTTGGACACATGGTT 61.268 57.895 0.00 0.00 42.37 3.67
1668 4090 0.745845 GAGATGCGCCTTGGACACAT 60.746 55.000 4.18 0.00 0.00 3.21
1699 4121 3.055891 CCAATCCTCCAAATCCAACAACC 60.056 47.826 0.00 0.00 0.00 3.77
1738 4160 5.247110 TGGAAGGGCATCATATACTTCTCTC 59.753 44.000 0.00 0.00 38.06 3.20
1932 4354 2.231964 TGGCTGACGTACCTTTTATCGT 59.768 45.455 0.00 0.00 39.21 3.73
2034 4509 1.344438 CTGGTCAGGATTGGCGCTATA 59.656 52.381 7.64 0.00 0.00 1.31
2116 4601 2.698274 AGATACATATGCGTGTCACCCA 59.302 45.455 1.58 0.00 33.62 4.51
2253 5492 5.182760 AGTCAAAATGAATGGAAGAGACAGC 59.817 40.000 0.00 0.00 0.00 4.40
2302 5546 6.061231 ACTTAGTAAGTTGCAAAGAACAGC 57.939 37.500 9.85 0.00 39.04 4.40
2638 5902 4.019174 ACAAGAGGGGATTAAAGTGCATG 58.981 43.478 0.00 0.00 0.00 4.06
2795 6074 5.428783 TCTTAGGAATTAGACCCCTCCAAAG 59.571 44.000 0.00 0.00 0.00 2.77
2880 6159 7.012327 CCCACAATTTGAATCGTACTATCACAT 59.988 37.037 2.79 0.00 0.00 3.21
2937 6495 1.271102 GGGTGTTTGTGTGTGTGTGTT 59.729 47.619 0.00 0.00 0.00 3.32
2938 6496 0.885196 GGGTGTTTGTGTGTGTGTGT 59.115 50.000 0.00 0.00 0.00 3.72
2939 6497 0.884514 TGGGTGTTTGTGTGTGTGTG 59.115 50.000 0.00 0.00 0.00 3.82
2940 6498 1.173043 CTGGGTGTTTGTGTGTGTGT 58.827 50.000 0.00 0.00 0.00 3.72
2941 6499 0.179140 GCTGGGTGTTTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2942 6500 1.319614 GGCTGGGTGTTTGTGTGTGT 61.320 55.000 0.00 0.00 0.00 3.72
2943 6501 1.318886 TGGCTGGGTGTTTGTGTGTG 61.319 55.000 0.00 0.00 0.00 3.82
2944 6502 0.396974 ATGGCTGGGTGTTTGTGTGT 60.397 50.000 0.00 0.00 0.00 3.72
3016 6576 3.898123 TCTGAAAGAGGTCTGTTGCTACT 59.102 43.478 0.00 0.00 38.67 2.57
3035 6600 5.449588 GCATGTCAACCACCTCAATAATCTG 60.450 44.000 0.00 0.00 0.00 2.90
3036 6601 4.641989 GCATGTCAACCACCTCAATAATCT 59.358 41.667 0.00 0.00 0.00 2.40
3300 6872 4.586421 TCTTGGCGTCATCATAAGAGAGAT 59.414 41.667 0.00 0.00 0.00 2.75
3716 7315 4.123506 GTTGAAGTAGCTATCTCCAAGCC 58.876 47.826 0.00 0.00 41.02 4.35
3882 7484 1.455849 CAAAGGTGTGCCTCCCTCA 59.544 57.895 0.00 0.00 46.33 3.86
3883 7485 1.303643 CCAAAGGTGTGCCTCCCTC 60.304 63.158 0.00 0.00 46.33 4.30
4032 7637 7.254590 CGCAAAACTTGAAATATAGAGAGAGGG 60.255 40.741 0.00 0.00 0.00 4.30
4033 7638 7.278868 ACGCAAAACTTGAAATATAGAGAGAGG 59.721 37.037 0.00 0.00 0.00 3.69
4034 7639 8.113062 CACGCAAAACTTGAAATATAGAGAGAG 58.887 37.037 0.00 0.00 0.00 3.20
4449 8055 1.239296 ACCGTTGTCAGATCGTCCGA 61.239 55.000 0.00 0.00 0.00 4.55
4515 8232 6.325919 AGAATCAACATCGGAGATCTCTAC 57.674 41.667 21.81 5.83 45.12 2.59
4691 8408 3.387699 TCTGAATATCTCCGGATTGCACA 59.612 43.478 3.57 0.81 33.71 4.57
4902 8619 1.699730 TTCACTCTGAGACCGAACCA 58.300 50.000 12.44 0.00 0.00 3.67
4914 8631 3.450457 GGACTGAGGATGTCATTCACTCT 59.550 47.826 11.82 0.00 36.73 3.24
5062 8779 1.273552 GGGTGGGATTTTTGGGATGGA 60.274 52.381 0.00 0.00 0.00 3.41
5354 9113 5.894807 AGAACCAAATACAGTGCATATTGC 58.105 37.500 0.00 0.00 45.29 3.56
5355 9114 7.814107 ACAAAGAACCAAATACAGTGCATATTG 59.186 33.333 0.00 0.00 0.00 1.90
5356 9115 7.895759 ACAAAGAACCAAATACAGTGCATATT 58.104 30.769 0.00 0.00 0.00 1.28
5358 9117 6.714810 AGACAAAGAACCAAATACAGTGCATA 59.285 34.615 0.00 0.00 0.00 3.14
5359 9118 5.536161 AGACAAAGAACCAAATACAGTGCAT 59.464 36.000 0.00 0.00 0.00 3.96
5360 9119 4.887071 AGACAAAGAACCAAATACAGTGCA 59.113 37.500 0.00 0.00 0.00 4.57
5361 9120 5.239525 AGAGACAAAGAACCAAATACAGTGC 59.760 40.000 0.00 0.00 0.00 4.40
5362 9121 6.662616 CAGAGACAAAGAACCAAATACAGTG 58.337 40.000 0.00 0.00 0.00 3.66
5363 9122 5.239525 GCAGAGACAAAGAACCAAATACAGT 59.760 40.000 0.00 0.00 0.00 3.55
5364 9123 5.335191 GGCAGAGACAAAGAACCAAATACAG 60.335 44.000 0.00 0.00 0.00 2.74
5365 9124 4.518970 GGCAGAGACAAAGAACCAAATACA 59.481 41.667 0.00 0.00 0.00 2.29
5366 9125 4.762251 AGGCAGAGACAAAGAACCAAATAC 59.238 41.667 0.00 0.00 0.00 1.89
5367 9126 4.985538 AGGCAGAGACAAAGAACCAAATA 58.014 39.130 0.00 0.00 0.00 1.40
5368 9127 3.837355 AGGCAGAGACAAAGAACCAAAT 58.163 40.909 0.00 0.00 0.00 2.32
5369 9128 3.297134 AGGCAGAGACAAAGAACCAAA 57.703 42.857 0.00 0.00 0.00 3.28
5370 9129 3.297134 AAGGCAGAGACAAAGAACCAA 57.703 42.857 0.00 0.00 0.00 3.67
5371 9130 2.951642 CAAAGGCAGAGACAAAGAACCA 59.048 45.455 0.00 0.00 0.00 3.67
5372 9131 3.214328 TCAAAGGCAGAGACAAAGAACC 58.786 45.455 0.00 0.00 0.00 3.62
5373 9132 5.444663 AATCAAAGGCAGAGACAAAGAAC 57.555 39.130 0.00 0.00 0.00 3.01
5374 9133 5.593909 TGAAATCAAAGGCAGAGACAAAGAA 59.406 36.000 0.00 0.00 0.00 2.52
5375 9134 5.132502 TGAAATCAAAGGCAGAGACAAAGA 58.867 37.500 0.00 0.00 0.00 2.52
5376 9135 5.009410 ACTGAAATCAAAGGCAGAGACAAAG 59.991 40.000 0.00 0.00 32.86 2.77
5377 9136 4.889409 ACTGAAATCAAAGGCAGAGACAAA 59.111 37.500 0.00 0.00 32.86 2.83
5378 9137 4.464008 ACTGAAATCAAAGGCAGAGACAA 58.536 39.130 0.00 0.00 32.86 3.18
5379 9138 4.067896 GACTGAAATCAAAGGCAGAGACA 58.932 43.478 0.00 0.00 32.86 3.41
5380 9139 4.067896 TGACTGAAATCAAAGGCAGAGAC 58.932 43.478 0.00 0.00 32.86 3.36
5381 9140 4.356405 TGACTGAAATCAAAGGCAGAGA 57.644 40.909 0.00 0.00 32.86 3.10
5385 9144 3.507162 TCCTGACTGAAATCAAAGGCA 57.493 42.857 0.00 0.00 0.00 4.75
5386 9145 5.397142 AAATCCTGACTGAAATCAAAGGC 57.603 39.130 2.92 0.00 0.00 4.35
5387 9146 7.224522 AGAAAATCCTGACTGAAATCAAAGG 57.775 36.000 1.77 1.77 0.00 3.11
5388 9147 8.355169 TGAAGAAAATCCTGACTGAAATCAAAG 58.645 33.333 0.00 0.00 0.00 2.77
5389 9148 8.236585 TGAAGAAAATCCTGACTGAAATCAAA 57.763 30.769 0.00 0.00 0.00 2.69
5390 9149 7.822161 TGAAGAAAATCCTGACTGAAATCAA 57.178 32.000 0.00 0.00 0.00 2.57
5391 9150 7.576287 GCATGAAGAAAATCCTGACTGAAATCA 60.576 37.037 0.00 0.00 0.00 2.57
5392 9151 6.750963 GCATGAAGAAAATCCTGACTGAAATC 59.249 38.462 0.00 0.00 0.00 2.17
5393 9152 6.209986 TGCATGAAGAAAATCCTGACTGAAAT 59.790 34.615 0.00 0.00 0.00 2.17
5394 9153 5.535783 TGCATGAAGAAAATCCTGACTGAAA 59.464 36.000 0.00 0.00 0.00 2.69
5395 9154 5.072055 TGCATGAAGAAAATCCTGACTGAA 58.928 37.500 0.00 0.00 0.00 3.02
5396 9155 4.654915 TGCATGAAGAAAATCCTGACTGA 58.345 39.130 0.00 0.00 0.00 3.41
5397 9156 5.381174 TTGCATGAAGAAAATCCTGACTG 57.619 39.130 0.00 0.00 0.00 3.51
5398 9157 7.683704 GCATATTGCATGAAGAAAATCCTGACT 60.684 37.037 0.00 0.00 44.26 3.41
5399 9158 6.420008 GCATATTGCATGAAGAAAATCCTGAC 59.580 38.462 0.00 0.00 44.26 3.51
5400 9159 6.509656 GCATATTGCATGAAGAAAATCCTGA 58.490 36.000 0.00 0.00 44.26 3.86
5401 9160 6.764877 GCATATTGCATGAAGAAAATCCTG 57.235 37.500 0.00 0.00 44.26 3.86
5484 9305 3.674528 AGATGATAGAGTCAATGCCGG 57.325 47.619 0.00 0.00 40.97 6.13
5491 9312 2.887783 GGGCGAGAAGATGATAGAGTCA 59.112 50.000 0.00 0.00 42.06 3.41
5503 9328 1.293924 CATGCAACTAGGGCGAGAAG 58.706 55.000 0.00 0.00 0.00 2.85
5504 9329 0.613260 ACATGCAACTAGGGCGAGAA 59.387 50.000 0.00 0.00 0.00 2.87
5505 9330 0.613260 AACATGCAACTAGGGCGAGA 59.387 50.000 0.00 0.00 0.00 4.04
5508 9346 2.097466 CCTAAAACATGCAACTAGGGCG 59.903 50.000 0.00 0.00 0.00 6.13
5513 9351 3.010138 AGGAGCCCTAAAACATGCAACTA 59.990 43.478 0.00 0.00 28.47 2.24
5523 9361 2.308570 TGAAGATGCAGGAGCCCTAAAA 59.691 45.455 0.00 0.00 41.13 1.52
5527 9365 0.913451 ACTGAAGATGCAGGAGCCCT 60.913 55.000 0.00 0.00 40.20 5.19
5529 9367 1.831580 AAACTGAAGATGCAGGAGCC 58.168 50.000 0.00 0.00 40.20 4.70
5530 9368 3.944015 ACATAAACTGAAGATGCAGGAGC 59.056 43.478 0.00 0.00 40.20 4.70
5533 9371 6.506500 AAGAACATAAACTGAAGATGCAGG 57.493 37.500 0.00 0.00 40.20 4.85
5555 9393 9.521503 CAGAAGTTTATCTCGATGACATAGAAA 57.478 33.333 0.00 0.00 0.00 2.52
5573 9411 5.723295 ACATTCAAAAGCACACAGAAGTTT 58.277 33.333 0.00 0.00 0.00 2.66
5593 9435 3.637911 TGCGGGGAATAAACAGTACAT 57.362 42.857 0.00 0.00 0.00 2.29
5607 9449 3.493272 GTTTTTGTTTTGTTTTGCGGGG 58.507 40.909 0.00 0.00 0.00 5.73
5608 9450 3.156753 CGTTTTTGTTTTGTTTTGCGGG 58.843 40.909 0.00 0.00 0.00 6.13
5609 9451 3.800163 ACGTTTTTGTTTTGTTTTGCGG 58.200 36.364 0.00 0.00 0.00 5.69
5610 9452 5.600648 AGTACGTTTTTGTTTTGTTTTGCG 58.399 33.333 0.00 0.00 0.00 4.85
5620 9462 9.141400 TCAGCAAATAAAAAGTACGTTTTTGTT 57.859 25.926 21.71 17.08 45.93 2.83
5621 9463 8.690680 TCAGCAAATAAAAAGTACGTTTTTGT 57.309 26.923 21.71 13.21 45.95 2.83
5622 9464 9.403869 GTTCAGCAAATAAAAAGTACGTTTTTG 57.596 29.630 21.71 15.72 45.95 2.44
5624 9466 7.977293 AGGTTCAGCAAATAAAAAGTACGTTTT 59.023 29.630 20.62 20.62 40.26 2.43
5625 9467 7.434013 CAGGTTCAGCAAATAAAAAGTACGTTT 59.566 33.333 0.54 0.54 0.00 3.60
5626 9468 6.915843 CAGGTTCAGCAAATAAAAAGTACGTT 59.084 34.615 0.00 0.00 0.00 3.99
5627 9469 6.435428 CAGGTTCAGCAAATAAAAAGTACGT 58.565 36.000 0.00 0.00 0.00 3.57
5628 9470 5.856455 CCAGGTTCAGCAAATAAAAAGTACG 59.144 40.000 0.00 0.00 0.00 3.67
5629 9471 6.745116 ACCAGGTTCAGCAAATAAAAAGTAC 58.255 36.000 0.00 0.00 0.00 2.73
5630 9472 6.969993 ACCAGGTTCAGCAAATAAAAAGTA 57.030 33.333 0.00 0.00 0.00 2.24
5631 9473 5.869649 ACCAGGTTCAGCAAATAAAAAGT 57.130 34.783 0.00 0.00 0.00 2.66
5632 9474 6.511605 GCAAACCAGGTTCAGCAAATAAAAAG 60.512 38.462 19.80 0.00 0.00 2.27
5633 9475 5.295540 GCAAACCAGGTTCAGCAAATAAAAA 59.704 36.000 19.80 0.00 0.00 1.94
5634 9476 4.813697 GCAAACCAGGTTCAGCAAATAAAA 59.186 37.500 19.80 0.00 0.00 1.52
5643 9485 1.605710 CACTGAGCAAACCAGGTTCAG 59.394 52.381 15.08 15.08 45.58 3.02
5648 9490 2.254546 TACACACTGAGCAAACCAGG 57.745 50.000 0.00 0.00 36.03 4.45
5700 9544 2.502538 TGGGAACATAACCTAAGGGACG 59.497 50.000 0.00 0.00 33.43 4.79
5724 9568 5.303165 CAGGAAAACCCTCTAGTTACGTTT 58.697 41.667 0.00 0.00 45.60 3.60
5902 9748 4.281657 TCATGAGCTAGCTACCTTTCAGA 58.718 43.478 19.38 7.23 0.00 3.27
5910 9785 6.152661 AGGATAGTTCATCATGAGCTAGCTAC 59.847 42.308 21.67 9.63 43.19 3.58
5936 9811 6.809869 ACTCATTTGGAAGGAAAGTGAAAAG 58.190 36.000 0.00 0.00 0.00 2.27
5971 9846 8.915654 GCAAATCATTAAAAAGTGAGGTTGTAG 58.084 33.333 0.00 0.00 31.27 2.74
5988 9863 2.894919 GGCGCCAGGCAAATCATT 59.105 55.556 24.80 0.00 46.16 2.57
5989 9864 3.520862 CGGCGCCAGGCAAATCAT 61.521 61.111 28.98 0.00 46.16 2.45
5990 9865 3.993614 ATCGGCGCCAGGCAAATCA 62.994 57.895 28.98 1.65 46.16 2.57
5991 9866 3.211963 ATCGGCGCCAGGCAAATC 61.212 61.111 28.98 0.00 46.16 2.17
5992 9867 3.520862 CATCGGCGCCAGGCAAAT 61.521 61.111 28.98 6.42 46.16 2.32
6016 9907 0.458669 CCTTAAAGCAGCAGCCATGG 59.541 55.000 7.63 7.63 43.56 3.66
6026 9917 5.594317 GGAATTGATAAGGAGCCTTAAAGCA 59.406 40.000 12.62 8.81 41.21 3.91
6027 9918 5.830457 AGGAATTGATAAGGAGCCTTAAAGC 59.170 40.000 12.62 6.64 41.21 3.51
6028 9919 7.888250 AAGGAATTGATAAGGAGCCTTAAAG 57.112 36.000 12.62 0.00 41.21 1.85
6044 9935 9.495754 GTTCTATCGATTTTGAGAAAGGAATTG 57.504 33.333 1.71 0.00 30.07 2.32
6157 10048 7.745620 AACTCTGAACCAAACTAATAACTGG 57.254 36.000 0.00 0.00 34.95 4.00
6334 10225 5.660460 TGTGCGATAATTGTGACTCTGTAT 58.340 37.500 0.00 0.00 0.00 2.29
6473 13486 6.706716 GTGAGCTATTCTCTGTAATTTACCCC 59.293 42.308 4.17 0.00 42.38 4.95
6530 13543 1.951631 GCAAGGCTAGATCGGCGAC 60.952 63.158 13.76 6.55 34.19 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.