Multiple sequence alignment - TraesCS2D01G574200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G574200 chr2D 100.000 6993 0 0 1 6993 638816220 638809228 0.000000e+00 12914.0
1 TraesCS2D01G574200 chr2D 92.643 1332 87 8 4898 6226 638731204 638729881 0.000000e+00 1906.0
2 TraesCS2D01G574200 chr2D 92.785 790 31 7 6221 6993 638729858 638729078 0.000000e+00 1120.0
3 TraesCS2D01G574200 chr2D 92.739 303 21 1 3589 3891 638750352 638750051 3.000000e-118 436.0
4 TraesCS2D01G574200 chr2D 85.657 251 21 3 4652 4902 638749498 638749263 4.190000e-62 250.0
5 TraesCS2D01G574200 chr2D 77.061 279 41 8 4049 4325 638750052 638749795 9.460000e-29 139.0
6 TraesCS2D01G574200 chr2D 94.545 55 1 1 6494 6546 582301484 582301430 4.490000e-12 84.2
7 TraesCS2D01G574200 chr2A 89.880 2164 151 37 750 2883 764326463 764324338 0.000000e+00 2721.0
8 TraesCS2D01G574200 chr2A 89.563 1351 72 30 3040 4372 764324341 764323042 0.000000e+00 1650.0
9 TraesCS2D01G574200 chr2A 91.466 1207 80 15 4652 5846 764322837 764321642 0.000000e+00 1637.0
10 TraesCS2D01G574200 chr2A 91.923 941 49 5 5075 6013 764319581 764318666 0.000000e+00 1291.0
11 TraesCS2D01G574200 chr2A 88.962 915 66 10 11 898 764327390 764326484 0.000000e+00 1098.0
12 TraesCS2D01G574200 chr2A 84.663 652 56 13 3737 4381 764299819 764299205 1.670000e-170 610.0
13 TraesCS2D01G574200 chr2A 89.417 463 33 11 6543 6993 764320353 764319895 2.830000e-158 569.0
14 TraesCS2D01G574200 chr2A 95.362 345 15 1 4670 5014 764298729 764298386 1.330000e-151 547.0
15 TraesCS2D01G574200 chr2A 91.732 254 16 4 3 256 757335516 757335764 1.440000e-91 348.0
16 TraesCS2D01G574200 chr2A 91.339 254 16 5 3 256 757364108 757363861 6.720000e-90 342.0
17 TraesCS2D01G574200 chr2A 78.797 316 29 18 5666 5966 764298298 764298006 2.000000e-40 178.0
18 TraesCS2D01G574200 chr2A 80.795 151 13 8 6348 6490 764320492 764320350 3.450000e-18 104.0
19 TraesCS2D01G574200 chr2A 97.872 47 1 0 3094 3140 764324341 764324295 1.620000e-11 82.4
20 TraesCS2D01G574200 chr2A 95.349 43 1 1 6514 6556 456496691 456496732 4.530000e-07 67.6
21 TraesCS2D01G574200 chr2A 95.238 42 1 1 6514 6555 362046936 362046896 1.630000e-06 65.8
22 TraesCS2D01G574200 chr2A 90.000 50 3 2 6514 6561 48870593 48870544 5.860000e-06 63.9
23 TraesCS2D01G574200 chr2A 85.714 56 6 2 6514 6568 14568121 14568067 2.720000e-04 58.4
24 TraesCS2D01G574200 chr2B 88.766 2172 149 45 750 2883 798139649 798137535 0.000000e+00 2571.0
25 TraesCS2D01G574200 chr2B 92.828 1464 91 10 4657 6114 798136036 798134581 0.000000e+00 2109.0
26 TraesCS2D01G574200 chr2B 92.511 1362 64 17 3040 4397 798137538 798136211 0.000000e+00 1916.0
27 TraesCS2D01G574200 chr2B 88.685 928 64 20 3 898 798140587 798139669 0.000000e+00 1094.0
28 TraesCS2D01G574200 chr2B 86.986 438 32 16 6543 6958 798134129 798133695 2.950000e-128 470.0
29 TraesCS2D01G574200 chr2B 88.561 271 24 5 6226 6490 798134395 798134126 8.750000e-84 322.0
30 TraesCS2D01G574200 chr2B 94.675 169 9 0 2880 3048 237581571 237581403 5.380000e-66 263.0
31 TraesCS2D01G574200 chr2B 93.151 146 8 1 6081 6226 798134580 798134437 5.490000e-51 213.0
32 TraesCS2D01G574200 chr2B 93.220 59 2 1 6490 6546 761990716 761990774 1.250000e-12 86.1
33 TraesCS2D01G574200 chr2B 100.000 45 0 0 3094 3138 798137538 798137494 4.490000e-12 84.2
34 TraesCS2D01G574200 chr6B 93.701 254 13 3 3 256 75279181 75278931 1.840000e-100 377.0
35 TraesCS2D01G574200 chr6B 95.758 165 7 0 2880 3044 8401305 8401469 4.160000e-67 267.0
36 TraesCS2D01G574200 chr6B 89.062 64 4 2 6489 6549 142092170 142092233 7.520000e-10 76.8
37 TraesCS2D01G574200 chr6A 92.549 255 14 5 3 256 420407728 420407478 1.850000e-95 361.0
38 TraesCS2D01G574200 chr7A 90.157 254 22 3 3 256 518950870 518951120 1.880000e-85 327.0
39 TraesCS2D01G574200 chr1B 96.914 162 5 0 2880 3041 450130781 450130942 8.940000e-69 272.0
40 TraesCS2D01G574200 chr3A 96.319 163 6 0 2879 3041 581269289 581269127 1.160000e-67 268.0
41 TraesCS2D01G574200 chr3A 87.500 184 22 1 3 185 49600418 49600235 1.980000e-50 211.0
42 TraesCS2D01G574200 chr3A 96.970 33 1 0 6299 6331 51776372 51776340 1.000000e-03 56.5
43 TraesCS2D01G574200 chr4B 94.220 173 10 0 2870 3042 407061164 407061336 1.500000e-66 265.0
44 TraesCS2D01G574200 chr3B 95.181 166 8 0 2880 3045 602591120 602591285 5.380000e-66 263.0
45 TraesCS2D01G574200 chr3B 94.118 170 10 0 2878 3047 555505278 555505109 6.960000e-65 259.0
46 TraesCS2D01G574200 chr5D 95.152 165 8 0 2877 3041 296949522 296949358 1.930000e-65 261.0
47 TraesCS2D01G574200 chr5D 80.303 264 46 6 3 265 204869036 204869294 1.990000e-45 195.0
48 TraesCS2D01G574200 chr4A 95.062 162 8 0 2880 3041 655254127 655254288 9.000000e-64 255.0
49 TraesCS2D01G574200 chr4A 82.114 123 21 1 6226 6348 500778368 500778489 3.450000e-18 104.0
50 TraesCS2D01G574200 chr4A 82.114 123 21 1 6226 6348 500779384 500779505 3.450000e-18 104.0
51 TraesCS2D01G574200 chr7B 90.598 117 11 0 6232 6348 58412054 58411938 9.390000e-34 156.0
52 TraesCS2D01G574200 chr7D 92.222 90 7 0 5321 5410 41269205 41269116 2.050000e-25 128.0
53 TraesCS2D01G574200 chr7D 86.239 109 15 0 6240 6348 102963972 102963864 1.230000e-22 119.0
54 TraesCS2D01G574200 chr6D 93.103 58 4 0 6494 6551 174400223 174400280 1.250000e-12 86.1
55 TraesCS2D01G574200 chr6D 91.803 61 2 1 6494 6551 3455629 3455569 1.620000e-11 82.4
56 TraesCS2D01G574200 chr5B 90.476 63 4 2 6494 6555 677155461 677155400 1.620000e-11 82.4
57 TraesCS2D01G574200 chr5B 87.692 65 6 2 6497 6561 671496898 671496836 2.710000e-09 75.0
58 TraesCS2D01G574200 chr1D 88.060 67 5 2 6491 6555 50062567 50062632 7.520000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G574200 chr2D 638809228 638816220 6992 True 12914.00 12914 100.000000 1 6993 1 chr2D.!!$R2 6992
1 TraesCS2D01G574200 chr2D 638729078 638731204 2126 True 1513.00 1906 92.714000 4898 6993 2 chr2D.!!$R3 2095
2 TraesCS2D01G574200 chr2D 638749263 638750352 1089 True 275.00 436 85.152333 3589 4902 3 chr2D.!!$R4 1313
3 TraesCS2D01G574200 chr2A 764318666 764327390 8724 True 1144.05 2721 89.984750 11 6993 8 chr2A.!!$R6 6982
4 TraesCS2D01G574200 chr2A 764298006 764299819 1813 True 445.00 610 86.274000 3737 5966 3 chr2A.!!$R5 2229
5 TraesCS2D01G574200 chr2B 798133695 798140587 6892 True 1097.40 2571 91.436000 3 6958 8 chr2B.!!$R2 6955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.319641 AGAGGTCTTTGGTTCGTCGC 60.320 55.000 0.0 0.0 0.00 5.19 F
1308 1543 0.107165 CCTCGTCAATTTCCTCCCCC 60.107 60.000 0.0 0.0 0.00 5.40 F
1935 2180 0.250338 AACGTTGGAGAGGGTCTTGC 60.250 55.000 0.0 0.0 0.00 4.01 F
1972 2217 1.303561 GGCTGTCCAGTTGCCATCA 60.304 57.895 0.0 0.0 45.46 3.07 F
3066 3321 1.342496 CACTTCTCTGTGGAGTCTGCA 59.658 52.381 0.0 0.0 40.29 4.41 F
4409 4983 0.670162 AATGCTGATATTGTGCCGCC 59.330 50.000 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1809 0.037160 ATGCTGGCATATGCATCCGA 59.963 50.0 28.07 8.84 45.5 4.55 R
2321 2573 0.109086 CTCCACAAGCACTCGACGAT 60.109 55.0 0.00 0.00 0.0 3.73 R
3029 3284 0.320697 GTGCAAAGTACTCCCTCCGT 59.679 55.0 0.00 0.00 0.0 4.69 R
3813 4089 0.539669 TCGACCAGGCTGAGTTCTCA 60.540 55.0 17.94 2.49 0.0 3.27 R
4830 5445 0.033504 TGACGGAGAAGGCAAGTGTC 59.966 55.0 0.00 0.00 0.0 3.67 R
6018 6958 1.311859 CACTGCAACAAAGGAGCTCA 58.688 50.0 17.19 0.00 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.582648 ACTCTAGGAGCCAAAGTTTTATTTTTA 57.417 29.630 0.00 0.00 32.04 1.52
75 76 7.232941 GGTTAGTTATAGCTATCTCCTGGTTGA 59.767 40.741 10.16 0.00 0.00 3.18
100 101 0.319641 AGAGGTCTTTGGTTCGTCGC 60.320 55.000 0.00 0.00 0.00 5.19
215 216 3.492656 GCTCAGCATTTATGACCGGAGTA 60.493 47.826 9.46 0.00 0.00 2.59
220 221 5.635280 CAGCATTTATGACCGGAGTACTATG 59.365 44.000 9.46 6.21 0.00 2.23
229 230 6.567050 TGACCGGAGTACTATGTAAAACATC 58.433 40.000 9.46 0.00 39.88 3.06
280 281 8.359060 GATAGTAATCCAGCTTTGTAAGACAG 57.641 38.462 0.00 0.00 0.00 3.51
319 320 4.340097 ACATGCAAGAGAGAGAGAGATGAG 59.660 45.833 0.00 0.00 0.00 2.90
344 345 4.214545 TCAAATACTACAAACAACAGCCGG 59.785 41.667 0.00 0.00 0.00 6.13
382 385 1.767759 AACCAGATGCTAACCATGGC 58.232 50.000 13.04 0.00 33.29 4.40
441 449 9.288576 TCCAATCATCACTTAATAATAAGCCAG 57.711 33.333 0.00 0.00 41.92 4.85
615 629 7.225538 ACCGAACTCAATGAATGAATGATAGAC 59.774 37.037 0.00 0.00 37.67 2.59
668 682 1.451927 GCACCATTCTCCGCATCCA 60.452 57.895 0.00 0.00 0.00 3.41
678 692 2.664185 CGCATCCATCCGCCTCAG 60.664 66.667 0.00 0.00 0.00 3.35
723 738 6.294176 GCAACTTTCATCTCCTAGCAGAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
787 822 3.434299 GCTTCAACTAATTTCGGACGGAA 59.566 43.478 0.00 0.00 0.00 4.30
799 834 2.490903 TCGGACGGAAGGAGTAGAAAAG 59.509 50.000 0.00 0.00 0.00 2.27
865 1078 6.839124 TCCAGCATAAACAATTCTGATGTT 57.161 33.333 0.00 0.00 42.56 2.71
892 1105 3.069586 TCTGTCGGAGAAACAAGACACAT 59.930 43.478 0.00 0.00 39.69 3.21
898 1111 7.015877 GTCGGAGAAACAAGACACATATTTTC 58.984 38.462 0.00 0.00 39.69 2.29
899 1112 6.708502 TCGGAGAAACAAGACACATATTTTCA 59.291 34.615 0.00 0.00 0.00 2.69
900 1113 6.797033 CGGAGAAACAAGACACATATTTTCAC 59.203 38.462 0.00 0.00 0.00 3.18
901 1114 7.519809 CGGAGAAACAAGACACATATTTTCACA 60.520 37.037 0.00 0.00 0.00 3.58
1043 1264 3.537506 TGTCCACCTCCCCTCCCA 61.538 66.667 0.00 0.00 0.00 4.37
1074 1295 3.227276 CCCCGACTCGATCCCCTG 61.227 72.222 0.00 0.00 0.00 4.45
1231 1462 1.342819 GATTCCCCTCTCACATCTCCG 59.657 57.143 0.00 0.00 0.00 4.63
1232 1463 0.687757 TTCCCCTCTCACATCTCCGG 60.688 60.000 0.00 0.00 0.00 5.14
1234 1465 1.680522 CCCCTCTCACATCTCCGGTG 61.681 65.000 0.00 0.00 37.60 4.94
1236 1467 1.142748 CTCTCACATCTCCGGTGCC 59.857 63.158 0.00 0.00 36.22 5.01
1237 1468 2.187946 CTCACATCTCCGGTGCCC 59.812 66.667 0.00 0.00 36.22 5.36
1239 1470 4.082523 CACATCTCCGGTGCCCGT 62.083 66.667 0.00 0.00 46.80 5.28
1240 1471 3.319198 ACATCTCCGGTGCCCGTT 61.319 61.111 0.00 0.00 46.80 4.44
1241 1472 2.511600 CATCTCCGGTGCCCGTTC 60.512 66.667 0.00 0.00 46.80 3.95
1283 1518 0.678048 AGCCCTGTCAAAGATTCGGC 60.678 55.000 0.00 0.00 35.08 5.54
1287 1522 1.373570 CTGTCAAAGATTCGGCCCTC 58.626 55.000 0.00 0.00 0.00 4.30
1300 1535 1.745489 GCCCTCGCCTCGTCAATTT 60.745 57.895 0.00 0.00 0.00 1.82
1308 1543 0.107165 CCTCGTCAATTTCCTCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
1416 1651 0.931005 CGGAAGGCAGATTCGCTTAC 59.069 55.000 0.00 0.00 0.00 2.34
1417 1652 1.471676 CGGAAGGCAGATTCGCTTACT 60.472 52.381 0.00 0.00 0.00 2.24
1418 1653 2.633488 GGAAGGCAGATTCGCTTACTT 58.367 47.619 0.00 0.00 0.00 2.24
1419 1654 3.737047 CGGAAGGCAGATTCGCTTACTTA 60.737 47.826 0.00 0.00 0.00 2.24
1424 1659 3.181474 GGCAGATTCGCTTACTTACTCCT 60.181 47.826 0.00 0.00 0.00 3.69
1501 1742 3.291584 AGATGCCGACTTGAGAGTATCA 58.708 45.455 0.00 0.00 37.82 2.15
1521 1762 5.936686 TCAAGCTTCTGACTGATCTTTTG 57.063 39.130 0.00 0.00 0.00 2.44
1530 1771 2.227388 GACTGATCTTTTGGTGCTGTGG 59.773 50.000 0.00 0.00 0.00 4.17
1556 1797 4.520111 CGATTTGATTTGCCTATCCATCCA 59.480 41.667 0.00 0.00 0.00 3.41
1566 1807 4.415179 TGCCTATCCATCCATAAGAAACCA 59.585 41.667 0.00 0.00 0.00 3.67
1568 1809 5.456763 GCCTATCCATCCATAAGAAACCAGT 60.457 44.000 0.00 0.00 0.00 4.00
1569 1810 6.234177 CCTATCCATCCATAAGAAACCAGTC 58.766 44.000 0.00 0.00 0.00 3.51
1575 1816 2.614057 CCATAAGAAACCAGTCGGATGC 59.386 50.000 0.00 0.00 35.59 3.91
1693 1935 7.233553 TGAACCAGACAGGATAGTATATTCCAG 59.766 40.741 0.00 0.00 41.22 3.86
1738 1983 2.046700 GAAATGGTCGGTCGGGCA 60.047 61.111 0.00 0.00 0.00 5.36
1787 2032 3.495753 GTGATGAAAAGTACCGGTCGTTT 59.504 43.478 12.40 13.67 0.00 3.60
1805 2050 3.119990 CGTTTTGGCGGAATGTGATAAGT 60.120 43.478 0.00 0.00 0.00 2.24
1812 2057 4.439057 GCGGAATGTGATAAGTCTGGTTA 58.561 43.478 0.00 0.00 0.00 2.85
1813 2058 4.270325 GCGGAATGTGATAAGTCTGGTTAC 59.730 45.833 0.00 0.00 0.00 2.50
1814 2059 4.503007 CGGAATGTGATAAGTCTGGTTACG 59.497 45.833 0.00 0.00 0.00 3.18
1815 2060 4.809426 GGAATGTGATAAGTCTGGTTACGG 59.191 45.833 0.00 0.00 0.00 4.02
1816 2061 5.416271 AATGTGATAAGTCTGGTTACGGT 57.584 39.130 0.00 0.00 0.00 4.83
1817 2062 4.877378 TGTGATAAGTCTGGTTACGGTT 57.123 40.909 0.00 0.00 0.00 4.44
1818 2063 5.981088 TGTGATAAGTCTGGTTACGGTTA 57.019 39.130 0.00 0.00 0.00 2.85
1838 2083 7.279758 ACGGTTACTAGTACTAATCTCACTCAC 59.720 40.741 0.91 0.00 0.00 3.51
1852 2097 5.724328 TCTCACTCACCACATGATAAGTTC 58.276 41.667 0.00 0.00 36.48 3.01
1857 2102 5.013079 ACTCACCACATGATAAGTTCAGGAA 59.987 40.000 0.00 0.00 38.42 3.36
1891 2136 2.250031 TGGAGTTCTAGGCACCGTTAA 58.750 47.619 0.00 0.00 0.00 2.01
1898 2143 6.470278 AGTTCTAGGCACCGTTAACTTATTT 58.530 36.000 3.71 0.00 0.00 1.40
1899 2144 6.938596 AGTTCTAGGCACCGTTAACTTATTTT 59.061 34.615 3.71 0.00 0.00 1.82
1906 2151 7.229106 AGGCACCGTTAACTTATTTTTGACTTA 59.771 33.333 3.71 0.00 0.00 2.24
1922 2167 8.789881 TTTTGACTTATTTGTGGATAACGTTG 57.210 30.769 11.99 0.00 0.00 4.10
1929 2174 1.553248 TGTGGATAACGTTGGAGAGGG 59.447 52.381 11.99 0.00 0.00 4.30
1935 2180 0.250338 AACGTTGGAGAGGGTCTTGC 60.250 55.000 0.00 0.00 0.00 4.01
1948 2193 5.838521 AGAGGGTCTTGCTTTTGGAAATTTA 59.161 36.000 0.00 0.00 0.00 1.40
1952 2197 6.710295 GGGTCTTGCTTTTGGAAATTTATTGT 59.290 34.615 0.00 0.00 0.00 2.71
1963 2208 5.170748 GGAAATTTATTGTTGGCTGTCCAG 58.829 41.667 0.00 0.00 44.53 3.86
1972 2217 1.303561 GGCTGTCCAGTTGCCATCA 60.304 57.895 0.00 0.00 45.46 3.07
1991 2236 6.460953 GCCATCATAACCGTGTTTATGGAAAT 60.461 38.462 18.62 4.19 39.16 2.17
2001 2246 6.470877 CCGTGTTTATGGAAATGGAAAATACG 59.529 38.462 7.96 7.96 41.36 3.06
2010 2255 6.435904 TGGAAATGGAAAATACGTGATTCCTT 59.564 34.615 21.71 15.90 42.50 3.36
2011 2256 7.039363 TGGAAATGGAAAATACGTGATTCCTTT 60.039 33.333 21.71 19.24 42.50 3.11
2012 2257 8.463607 GGAAATGGAAAATACGTGATTCCTTTA 58.536 33.333 21.71 8.98 42.50 1.85
2013 2258 9.285770 GAAATGGAAAATACGTGATTCCTTTAC 57.714 33.333 21.71 11.97 42.50 2.01
2087 2336 9.575868 TTGGTGGATTTACTTGTGATTTAGTTA 57.424 29.630 0.00 0.00 0.00 2.24
2090 2339 8.674607 GTGGATTTACTTGTGATTTAGTTAGGG 58.325 37.037 0.00 0.00 0.00 3.53
2094 2343 9.614792 ATTTACTTGTGATTTAGTTAGGGCTAG 57.385 33.333 0.00 0.00 0.00 3.42
2096 2345 6.641474 ACTTGTGATTTAGTTAGGGCTAGAC 58.359 40.000 0.00 0.00 0.00 2.59
2097 2346 6.440965 ACTTGTGATTTAGTTAGGGCTAGACT 59.559 38.462 0.00 0.00 0.00 3.24
2098 2347 6.466885 TGTGATTTAGTTAGGGCTAGACTC 57.533 41.667 0.00 0.00 0.00 3.36
2099 2348 6.195700 TGTGATTTAGTTAGGGCTAGACTCT 58.804 40.000 0.00 0.00 0.00 3.24
2100 2349 6.096987 TGTGATTTAGTTAGGGCTAGACTCTG 59.903 42.308 0.00 0.00 0.00 3.35
2104 2356 6.527057 TTAGTTAGGGCTAGACTCTGTTTC 57.473 41.667 0.00 0.00 0.00 2.78
2120 2372 6.018994 ACTCTGTTTCTTGTCGTATTTGTGAC 60.019 38.462 0.00 0.00 35.67 3.67
2122 2374 5.120399 TGTTTCTTGTCGTATTTGTGACCT 58.880 37.500 0.00 0.00 34.18 3.85
2137 2389 5.761165 TGTGACCTGTTACCTTTTAAAGC 57.239 39.130 0.00 0.00 0.00 3.51
2161 2413 6.572519 CATGTAATTATTTGGAACCTGTGGG 58.427 40.000 0.00 0.00 38.88 4.61
2173 2425 1.829533 CTGTGGGTGCAAAGCCTGT 60.830 57.895 0.00 0.00 0.00 4.00
2180 2432 2.164422 GGGTGCAAAGCCTGTAATTCTC 59.836 50.000 0.00 0.00 0.00 2.87
2184 2436 5.220931 GGTGCAAAGCCTGTAATTCTCTATG 60.221 44.000 0.00 0.00 0.00 2.23
2257 2509 5.097529 CCAAATGAATCTCAACATTGTCGG 58.902 41.667 0.00 0.00 36.92 4.79
2258 2510 5.335897 CCAAATGAATCTCAACATTGTCGGT 60.336 40.000 0.00 0.00 36.92 4.69
2320 2572 4.190001 CTGCAGATTCAGAGCACATAGTT 58.810 43.478 8.42 0.00 36.19 2.24
2321 2573 5.343307 TGCAGATTCAGAGCACATAGTTA 57.657 39.130 0.00 0.00 32.55 2.24
2334 2586 4.352039 CACATAGTTATCGTCGAGTGCTT 58.648 43.478 0.00 0.00 0.00 3.91
2336 2588 4.142447 ACATAGTTATCGTCGAGTGCTTGT 60.142 41.667 0.00 0.00 0.00 3.16
2373 2625 3.788227 AGCATTGAAGTGTTAGGTGGA 57.212 42.857 0.00 0.00 0.00 4.02
2378 2630 5.863935 GCATTGAAGTGTTAGGTGGATTTTC 59.136 40.000 0.00 0.00 0.00 2.29
2442 2696 5.221601 TGTCAAGAGCTGAAGATGAAGAGTT 60.222 40.000 0.00 0.00 35.22 3.01
2446 2700 4.771577 AGAGCTGAAGATGAAGAGTTCTCA 59.228 41.667 0.00 0.00 0.00 3.27
2477 2731 4.531854 TGTTATCTCCTCTCTGTCTCTGG 58.468 47.826 0.00 0.00 0.00 3.86
2671 2925 1.827969 CTCCTGTTCTCCACCTACTGG 59.172 57.143 0.00 0.00 42.29 4.00
2879 3134 7.790782 TTTGCATTATAACCTTTTCCCTTCT 57.209 32.000 0.00 0.00 0.00 2.85
2880 3135 8.887264 TTTGCATTATAACCTTTTCCCTTCTA 57.113 30.769 0.00 0.00 0.00 2.10
2881 3136 7.875327 TGCATTATAACCTTTTCCCTTCTAC 57.125 36.000 0.00 0.00 0.00 2.59
2882 3137 7.639378 TGCATTATAACCTTTTCCCTTCTACT 58.361 34.615 0.00 0.00 0.00 2.57
2883 3138 7.773690 TGCATTATAACCTTTTCCCTTCTACTC 59.226 37.037 0.00 0.00 0.00 2.59
2884 3139 7.228906 GCATTATAACCTTTTCCCTTCTACTCC 59.771 40.741 0.00 0.00 0.00 3.85
2885 3140 5.712084 ATAACCTTTTCCCTTCTACTCCC 57.288 43.478 0.00 0.00 0.00 4.30
2886 3141 3.293215 ACCTTTTCCCTTCTACTCCCT 57.707 47.619 0.00 0.00 0.00 4.20
2887 3142 3.182976 ACCTTTTCCCTTCTACTCCCTC 58.817 50.000 0.00 0.00 0.00 4.30
2888 3143 2.506231 CCTTTTCCCTTCTACTCCCTCC 59.494 54.545 0.00 0.00 0.00 4.30
2889 3144 3.182152 CTTTTCCCTTCTACTCCCTCCA 58.818 50.000 0.00 0.00 0.00 3.86
2890 3145 3.508952 TTTCCCTTCTACTCCCTCCAT 57.491 47.619 0.00 0.00 0.00 3.41
2891 3146 3.508952 TTCCCTTCTACTCCCTCCATT 57.491 47.619 0.00 0.00 0.00 3.16
2892 3147 3.047695 TCCCTTCTACTCCCTCCATTC 57.952 52.381 0.00 0.00 0.00 2.67
2893 3148 2.050918 CCCTTCTACTCCCTCCATTCC 58.949 57.143 0.00 0.00 0.00 3.01
2894 3149 2.360854 CCCTTCTACTCCCTCCATTCCT 60.361 54.545 0.00 0.00 0.00 3.36
2895 3150 3.116707 CCCTTCTACTCCCTCCATTCCTA 60.117 52.174 0.00 0.00 0.00 2.94
2896 3151 4.557705 CCTTCTACTCCCTCCATTCCTAA 58.442 47.826 0.00 0.00 0.00 2.69
2897 3152 4.969359 CCTTCTACTCCCTCCATTCCTAAA 59.031 45.833 0.00 0.00 0.00 1.85
2898 3153 5.608860 CCTTCTACTCCCTCCATTCCTAAAT 59.391 44.000 0.00 0.00 0.00 1.40
2899 3154 6.787957 CCTTCTACTCCCTCCATTCCTAAATA 59.212 42.308 0.00 0.00 0.00 1.40
2900 3155 7.459444 CCTTCTACTCCCTCCATTCCTAAATAT 59.541 40.741 0.00 0.00 0.00 1.28
2901 3156 9.548631 CTTCTACTCCCTCCATTCCTAAATATA 57.451 37.037 0.00 0.00 0.00 0.86
2902 3157 9.907819 TTCTACTCCCTCCATTCCTAAATATAA 57.092 33.333 0.00 0.00 0.00 0.98
2903 3158 9.548631 TCTACTCCCTCCATTCCTAAATATAAG 57.451 37.037 0.00 0.00 0.00 1.73
2904 3159 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
2905 3160 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
2906 3161 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
2907 3162 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
2908 3163 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
2909 3164 9.289782 CCCTCCATTCCTAAATATAAGTCTTTG 57.710 37.037 0.00 0.00 0.00 2.77
2910 3165 9.853177 CCTCCATTCCTAAATATAAGTCTTTGT 57.147 33.333 0.00 0.00 0.00 2.83
2925 3180 7.588143 AAGTCTTTGTAGAGATTTCACGATG 57.412 36.000 0.00 0.00 0.00 3.84
2926 3181 6.102663 AGTCTTTGTAGAGATTTCACGATGG 58.897 40.000 0.00 0.00 0.00 3.51
2927 3182 6.071334 AGTCTTTGTAGAGATTTCACGATGGA 60.071 38.462 0.00 0.00 0.00 3.41
2928 3183 6.035112 GTCTTTGTAGAGATTTCACGATGGAC 59.965 42.308 0.00 0.00 0.00 4.02
2929 3184 5.661056 TTGTAGAGATTTCACGATGGACT 57.339 39.130 0.00 0.00 0.00 3.85
2930 3185 6.769134 TTGTAGAGATTTCACGATGGACTA 57.231 37.500 0.00 0.00 0.00 2.59
2931 3186 6.132791 TGTAGAGATTTCACGATGGACTAC 57.867 41.667 0.00 0.00 0.00 2.73
2932 3187 5.650703 TGTAGAGATTTCACGATGGACTACA 59.349 40.000 0.00 0.00 36.46 2.74
2933 3188 5.860941 AGAGATTTCACGATGGACTACAT 57.139 39.130 0.00 0.00 44.18 2.29
2934 3189 6.961360 AGAGATTTCACGATGGACTACATA 57.039 37.500 0.00 0.00 40.72 2.29
2935 3190 6.740110 AGAGATTTCACGATGGACTACATAC 58.260 40.000 0.00 0.00 40.72 2.39
2936 3191 5.844004 AGATTTCACGATGGACTACATACC 58.156 41.667 0.00 0.00 40.72 2.73
2937 3192 3.703286 TTCACGATGGACTACATACCG 57.297 47.619 0.00 0.00 40.72 4.02
2938 3193 2.921821 TCACGATGGACTACATACCGA 58.078 47.619 0.00 0.00 40.72 4.69
2939 3194 2.876550 TCACGATGGACTACATACCGAG 59.123 50.000 0.00 0.00 40.72 4.63
2940 3195 2.617308 CACGATGGACTACATACCGAGT 59.383 50.000 0.00 0.00 40.72 4.18
2941 3196 3.811497 CACGATGGACTACATACCGAGTA 59.189 47.826 0.00 0.00 40.72 2.59
2942 3197 4.274214 CACGATGGACTACATACCGAGTAA 59.726 45.833 0.00 0.00 40.72 2.24
2943 3198 4.883585 ACGATGGACTACATACCGAGTAAA 59.116 41.667 0.00 0.00 40.72 2.01
2944 3199 5.357878 ACGATGGACTACATACCGAGTAAAA 59.642 40.000 0.00 0.00 40.72 1.52
2945 3200 6.040166 ACGATGGACTACATACCGAGTAAAAT 59.960 38.462 0.00 0.00 40.72 1.82
2946 3201 6.362551 CGATGGACTACATACCGAGTAAAATG 59.637 42.308 0.00 0.00 40.72 2.32
2947 3202 6.778834 TGGACTACATACCGAGTAAAATGA 57.221 37.500 0.00 0.00 0.00 2.57
2948 3203 6.802608 TGGACTACATACCGAGTAAAATGAG 58.197 40.000 0.00 0.00 0.00 2.90
2949 3204 6.379133 TGGACTACATACCGAGTAAAATGAGT 59.621 38.462 0.00 0.00 0.00 3.41
2950 3205 6.696148 GGACTACATACCGAGTAAAATGAGTG 59.304 42.308 0.00 0.00 0.00 3.51
2951 3206 7.400599 ACTACATACCGAGTAAAATGAGTGA 57.599 36.000 0.00 0.00 0.00 3.41
2952 3207 7.833786 ACTACATACCGAGTAAAATGAGTGAA 58.166 34.615 0.00 0.00 0.00 3.18
2953 3208 8.475639 ACTACATACCGAGTAAAATGAGTGAAT 58.524 33.333 0.00 0.00 0.00 2.57
2954 3209 7.772332 ACATACCGAGTAAAATGAGTGAATC 57.228 36.000 0.00 0.00 0.00 2.52
2955 3210 7.556844 ACATACCGAGTAAAATGAGTGAATCT 58.443 34.615 0.00 0.00 0.00 2.40
2956 3211 8.692710 ACATACCGAGTAAAATGAGTGAATCTA 58.307 33.333 0.00 0.00 0.00 1.98
2957 3212 8.969267 CATACCGAGTAAAATGAGTGAATCTAC 58.031 37.037 0.00 0.00 0.00 2.59
2958 3213 6.931838 ACCGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 0.00 2.74
2959 3214 6.812160 ACCGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 40.60 2.90
2970 3225 6.346477 AGTGAATCTACACTCTAAACTGCA 57.654 37.500 0.00 0.00 46.36 4.41
2971 3226 6.940739 AGTGAATCTACACTCTAAACTGCAT 58.059 36.000 0.00 0.00 46.36 3.96
2972 3227 7.038659 AGTGAATCTACACTCTAAACTGCATC 58.961 38.462 0.00 0.00 46.36 3.91
2973 3228 7.038659 GTGAATCTACACTCTAAACTGCATCT 58.961 38.462 0.00 0.00 37.73 2.90
2974 3229 8.191446 GTGAATCTACACTCTAAACTGCATCTA 58.809 37.037 0.00 0.00 37.73 1.98
2975 3230 8.191446 TGAATCTACACTCTAAACTGCATCTAC 58.809 37.037 0.00 0.00 0.00 2.59
2976 3231 7.646548 ATCTACACTCTAAACTGCATCTACA 57.353 36.000 0.00 0.00 0.00 2.74
2977 3232 7.646548 TCTACACTCTAAACTGCATCTACAT 57.353 36.000 0.00 0.00 0.00 2.29
2978 3233 8.747538 TCTACACTCTAAACTGCATCTACATA 57.252 34.615 0.00 0.00 0.00 2.29
2979 3234 8.622157 TCTACACTCTAAACTGCATCTACATAC 58.378 37.037 0.00 0.00 0.00 2.39
2980 3235 7.170393 ACACTCTAAACTGCATCTACATACA 57.830 36.000 0.00 0.00 0.00 2.29
2981 3236 7.786030 ACACTCTAAACTGCATCTACATACAT 58.214 34.615 0.00 0.00 0.00 2.29
2982 3237 7.923344 ACACTCTAAACTGCATCTACATACATC 59.077 37.037 0.00 0.00 0.00 3.06
2983 3238 7.383572 CACTCTAAACTGCATCTACATACATCC 59.616 40.741 0.00 0.00 0.00 3.51
2984 3239 6.447162 TCTAAACTGCATCTACATACATCCG 58.553 40.000 0.00 0.00 0.00 4.18
2985 3240 4.672587 AACTGCATCTACATACATCCGT 57.327 40.909 0.00 0.00 0.00 4.69
2986 3241 5.784578 AACTGCATCTACATACATCCGTA 57.215 39.130 0.00 0.00 0.00 4.02
2987 3242 5.984695 ACTGCATCTACATACATCCGTAT 57.015 39.130 0.00 0.00 38.96 3.06
2998 3253 6.951256 CATACATCCGTATGTGGTTCATAG 57.049 41.667 3.56 0.00 46.70 2.23
2999 3254 6.455647 CATACATCCGTATGTGGTTCATAGT 58.544 40.000 3.56 0.00 46.70 2.12
3000 3255 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
3001 3256 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
3002 3257 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
3003 3258 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
3004 3259 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
3005 3260 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
3006 3261 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
3007 3262 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
3008 3263 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
3009 3264 5.344743 TGTGGTTCATAGTGGAATCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
3010 3265 4.162320 TGTGGTTCATAGTGGAATCTCTCC 59.838 45.833 0.00 0.00 45.64 3.71
3011 3266 7.548782 ATGTGGTTCATAGTGGAATCTCTCCA 61.549 42.308 0.00 0.00 42.66 3.86
3012 3267 8.954344 ATGTGGTTCATAGTGGAATCTCTCCAA 61.954 40.741 0.00 0.00 44.66 3.53
3031 3286 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
3032 3287 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3033 3288 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
3034 3289 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
3035 3290 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
3036 3291 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3037 3292 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3038 3293 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3051 3306 2.701107 GGAGGGAGTACTTTGCACTTC 58.299 52.381 0.00 0.00 0.00 3.01
3066 3321 1.342496 CACTTCTCTGTGGAGTCTGCA 59.658 52.381 0.00 0.00 40.29 4.41
3067 3322 2.042464 ACTTCTCTGTGGAGTCTGCAA 58.958 47.619 0.00 0.00 40.29 4.08
3068 3323 2.036992 ACTTCTCTGTGGAGTCTGCAAG 59.963 50.000 0.00 0.00 40.29 4.01
3069 3324 2.001076 TCTCTGTGGAGTCTGCAAGA 57.999 50.000 0.00 1.36 38.41 3.02
3374 3629 5.551760 AAGCTGCAATAGTGTATGACAAC 57.448 39.130 1.02 0.00 0.00 3.32
3424 3679 2.972348 TGTACCTTGTCCCTCTCAACT 58.028 47.619 0.00 0.00 0.00 3.16
3425 3680 2.897969 TGTACCTTGTCCCTCTCAACTC 59.102 50.000 0.00 0.00 0.00 3.01
3439 3694 5.050023 CCTCTCAACTCCGTTCTTCTTTTTC 60.050 44.000 0.00 0.00 0.00 2.29
3813 4089 5.365619 GAGGTGTGGATAATACCGACATTT 58.634 41.667 0.00 0.00 39.46 2.32
4119 4395 4.675190 CAGTATGTCTCTGCCAACTTTG 57.325 45.455 0.00 0.00 0.00 2.77
4120 4396 4.318332 CAGTATGTCTCTGCCAACTTTGA 58.682 43.478 0.00 0.00 0.00 2.69
4121 4397 4.756642 CAGTATGTCTCTGCCAACTTTGAA 59.243 41.667 0.00 0.00 0.00 2.69
4122 4398 5.239306 CAGTATGTCTCTGCCAACTTTGAAA 59.761 40.000 0.00 0.00 0.00 2.69
4123 4399 6.006449 AGTATGTCTCTGCCAACTTTGAAAT 58.994 36.000 0.00 0.00 0.00 2.17
4124 4400 4.572985 TGTCTCTGCCAACTTTGAAATG 57.427 40.909 0.00 0.00 0.00 2.32
4125 4401 4.206375 TGTCTCTGCCAACTTTGAAATGA 58.794 39.130 0.00 0.00 0.00 2.57
4126 4402 4.828939 TGTCTCTGCCAACTTTGAAATGAT 59.171 37.500 0.00 0.00 0.00 2.45
4127 4403 6.003326 TGTCTCTGCCAACTTTGAAATGATA 58.997 36.000 0.00 0.00 0.00 2.15
4128 4404 6.660521 TGTCTCTGCCAACTTTGAAATGATAT 59.339 34.615 0.00 0.00 0.00 1.63
4159 4437 6.484308 TGTTTTGTAGAAACTAGTACCTTGCC 59.516 38.462 0.00 0.00 0.00 4.52
4160 4438 5.811796 TTGTAGAAACTAGTACCTTGCCA 57.188 39.130 0.00 0.00 0.00 4.92
4172 4450 3.967332 ACCTTGCCAATTTGATCCTTG 57.033 42.857 0.00 0.00 0.00 3.61
4185 4463 1.006813 ATCCTTGGCCACACCCATAA 58.993 50.000 3.88 0.00 37.83 1.90
4214 4492 5.346181 AGGCAAAACTAGTCACCTCTATC 57.654 43.478 0.00 0.00 0.00 2.08
4219 4497 6.405953 GCAAAACTAGTCACCTCTATCTGCTA 60.406 42.308 0.00 0.00 0.00 3.49
4222 4500 9.594936 AAAACTAGTCACCTCTATCTGCTATAT 57.405 33.333 0.00 0.00 0.00 0.86
4225 4503 9.594936 ACTAGTCACCTCTATCTGCTATATTTT 57.405 33.333 0.00 0.00 0.00 1.82
4288 4566 2.355818 GGGCTAGGTTCCGAATCTGTTT 60.356 50.000 4.01 0.00 0.00 2.83
4292 4570 1.880027 AGGTTCCGAATCTGTTTGCAC 59.120 47.619 0.00 0.00 0.00 4.57
4293 4571 1.606668 GGTTCCGAATCTGTTTGCACA 59.393 47.619 0.00 0.00 0.00 4.57
4295 4575 3.042887 GTTCCGAATCTGTTTGCACAAC 58.957 45.455 0.00 0.00 30.36 3.32
4296 4576 1.606668 TCCGAATCTGTTTGCACAACC 59.393 47.619 8.60 0.00 30.36 3.77
4298 4578 2.030007 CCGAATCTGTTTGCACAACCAT 60.030 45.455 8.60 0.80 30.36 3.55
4319 4599 7.302524 ACCATTGTGTCGATGTGTAATAAAAC 58.697 34.615 0.00 0.00 0.00 2.43
4321 4601 7.692291 CCATTGTGTCGATGTGTAATAAAACTC 59.308 37.037 0.00 0.00 0.00 3.01
4325 4605 7.095816 TGTGTCGATGTGTAATAAAACTCACTG 60.096 37.037 0.00 0.00 0.00 3.66
4351 4667 9.282247 GAACTACTCTGCATTTATTTTCATGTG 57.718 33.333 0.00 0.00 0.00 3.21
4357 4673 4.694509 TGCATTTATTTTCATGTGGTTGGC 59.305 37.500 0.00 0.00 0.00 4.52
4365 4681 1.955778 TCATGTGGTTGGCACTTGAAG 59.044 47.619 0.00 0.00 34.98 3.02
4372 4689 2.229784 GGTTGGCACTTGAAGATCCTTG 59.770 50.000 0.00 0.00 0.00 3.61
4381 4945 6.036953 GCACTTGAAGATCCTTGAGAACATAG 59.963 42.308 0.00 0.00 0.00 2.23
4382 4946 7.102346 CACTTGAAGATCCTTGAGAACATAGT 58.898 38.462 0.00 0.00 0.00 2.12
4406 4980 9.388506 AGTAATATAGAATGCTGATATTGTGCC 57.611 33.333 0.00 0.00 30.38 5.01
4407 4981 6.915544 ATATAGAATGCTGATATTGTGCCG 57.084 37.500 0.00 0.00 0.00 5.69
4408 4982 1.605710 AGAATGCTGATATTGTGCCGC 59.394 47.619 0.00 0.00 0.00 6.53
4409 4983 0.670162 AATGCTGATATTGTGCCGCC 59.330 50.000 0.00 0.00 0.00 6.13
4411 4985 1.356624 GCTGATATTGTGCCGCCAC 59.643 57.895 0.00 0.00 42.40 5.01
4418 4992 3.353600 TGTGCCGCCACATGAAAG 58.646 55.556 0.00 0.00 46.51 2.62
4419 4993 1.528076 TGTGCCGCCACATGAAAGT 60.528 52.632 0.00 0.00 46.51 2.66
4420 4994 1.106351 TGTGCCGCCACATGAAAGTT 61.106 50.000 0.00 0.00 46.51 2.66
4422 4996 1.212751 GCCGCCACATGAAAGTTCC 59.787 57.895 0.00 0.00 0.00 3.62
4423 4997 1.523154 GCCGCCACATGAAAGTTCCA 61.523 55.000 0.00 0.00 0.00 3.53
4424 4998 0.958091 CCGCCACATGAAAGTTCCAA 59.042 50.000 0.00 0.00 0.00 3.53
4425 4999 1.545582 CCGCCACATGAAAGTTCCAAT 59.454 47.619 0.00 0.00 0.00 3.16
4426 5000 2.029110 CCGCCACATGAAAGTTCCAATT 60.029 45.455 0.00 0.00 0.00 2.32
4427 5001 2.988493 CGCCACATGAAAGTTCCAATTG 59.012 45.455 0.00 0.00 0.00 2.32
4428 5002 2.738314 GCCACATGAAAGTTCCAATTGC 59.262 45.455 0.00 0.00 0.00 3.56
4429 5003 3.803021 GCCACATGAAAGTTCCAATTGCA 60.803 43.478 0.00 0.00 0.00 4.08
4430 5004 4.571919 CCACATGAAAGTTCCAATTGCAT 58.428 39.130 0.00 0.00 0.00 3.96
4431 5005 4.998672 CCACATGAAAGTTCCAATTGCATT 59.001 37.500 0.00 0.00 0.00 3.56
4432 5006 5.470777 CCACATGAAAGTTCCAATTGCATTT 59.529 36.000 0.00 0.00 0.00 2.32
4433 5007 6.016943 CCACATGAAAGTTCCAATTGCATTTT 60.017 34.615 0.00 0.00 0.00 1.82
4434 5008 6.853872 CACATGAAAGTTCCAATTGCATTTTG 59.146 34.615 0.00 0.00 0.00 2.44
4445 5023 6.149142 TCCAATTGCATTTTGTATTTCCTTGC 59.851 34.615 0.00 0.00 0.00 4.01
4446 5024 5.783100 ATTGCATTTTGTATTTCCTTGCG 57.217 34.783 0.00 0.00 0.00 4.85
4448 5026 4.484236 TGCATTTTGTATTTCCTTGCGAG 58.516 39.130 0.00 0.00 0.00 5.03
4450 5028 5.105797 TGCATTTTGTATTTCCTTGCGAGAT 60.106 36.000 1.22 0.00 0.00 2.75
4453 5031 4.355543 TTGTATTTCCTTGCGAGATTGC 57.644 40.909 1.22 0.00 0.00 3.56
4454 5032 3.342719 TGTATTTCCTTGCGAGATTGCA 58.657 40.909 1.22 0.00 44.61 4.08
4456 5034 3.705043 ATTTCCTTGCGAGATTGCATC 57.295 42.857 1.22 0.00 45.78 3.91
4470 5048 7.221452 GCGAGATTGCATCTGTAAATTCATTTT 59.779 33.333 3.76 0.00 40.38 1.82
4473 5051 9.932207 AGATTGCATCTGTAAATTCATTTTTGA 57.068 25.926 0.00 0.00 38.44 2.69
4476 5054 9.491675 TTGCATCTGTAAATTCATTTTTGACAT 57.508 25.926 0.00 0.00 0.00 3.06
4512 5091 6.673154 TGCAATTGTAGATTCATCAGTCAG 57.327 37.500 7.40 0.00 0.00 3.51
4513 5092 5.587443 TGCAATTGTAGATTCATCAGTCAGG 59.413 40.000 7.40 0.00 0.00 3.86
4519 5098 8.589701 TTGTAGATTCATCAGTCAGGTAGTAA 57.410 34.615 0.00 0.00 0.00 2.24
4525 5104 6.048732 TCATCAGTCAGGTAGTAATGCAAA 57.951 37.500 0.00 0.00 0.00 3.68
4567 5178 7.781324 AACAAATTGGACAACTCCATAATCT 57.219 32.000 0.00 0.00 46.64 2.40
4568 5179 8.877864 AACAAATTGGACAACTCCATAATCTA 57.122 30.769 0.00 0.00 46.64 1.98
4569 5180 8.281212 ACAAATTGGACAACTCCATAATCTAC 57.719 34.615 0.00 0.00 46.64 2.59
4570 5181 7.888021 ACAAATTGGACAACTCCATAATCTACA 59.112 33.333 0.00 0.00 46.64 2.74
4571 5182 8.739039 CAAATTGGACAACTCCATAATCTACAA 58.261 33.333 0.00 0.00 46.64 2.41
4572 5183 9.479549 AAATTGGACAACTCCATAATCTACAAT 57.520 29.630 0.00 0.00 46.64 2.71
4573 5184 8.682936 ATTGGACAACTCCATAATCTACAATC 57.317 34.615 0.00 0.00 46.64 2.67
4574 5185 7.194112 TGGACAACTCCATAATCTACAATCA 57.806 36.000 0.00 0.00 42.15 2.57
4575 5186 7.805163 TGGACAACTCCATAATCTACAATCAT 58.195 34.615 0.00 0.00 42.15 2.45
4576 5187 8.274322 TGGACAACTCCATAATCTACAATCATT 58.726 33.333 0.00 0.00 42.15 2.57
4577 5188 9.778741 GGACAACTCCATAATCTACAATCATTA 57.221 33.333 0.00 0.00 36.42 1.90
4594 5205 9.008965 ACAATCATTAATGTAAAGTGTACTGCA 57.991 29.630 14.97 0.00 0.00 4.41
4598 5209 8.458052 TCATTAATGTAAAGTGTACTGCATTGG 58.542 33.333 14.97 8.19 31.30 3.16
4599 5210 7.987750 TTAATGTAAAGTGTACTGCATTGGA 57.012 32.000 14.41 0.00 31.30 3.53
4600 5211 5.880054 ATGTAAAGTGTACTGCATTGGAC 57.120 39.130 0.00 0.00 0.00 4.02
4601 5212 4.709250 TGTAAAGTGTACTGCATTGGACA 58.291 39.130 0.00 0.00 0.00 4.02
4602 5213 4.513692 TGTAAAGTGTACTGCATTGGACAC 59.486 41.667 12.44 12.44 42.01 3.67
4603 5214 2.928801 AGTGTACTGCATTGGACACA 57.071 45.000 20.22 0.00 43.72 3.72
4604 5215 3.423539 AGTGTACTGCATTGGACACAT 57.576 42.857 20.22 6.07 43.72 3.21
4605 5216 3.076621 AGTGTACTGCATTGGACACATG 58.923 45.455 20.22 0.00 43.72 3.21
4606 5217 2.162208 GTGTACTGCATTGGACACATGG 59.838 50.000 14.85 0.00 41.46 3.66
4607 5218 2.224744 TGTACTGCATTGGACACATGGT 60.225 45.455 0.00 0.00 0.00 3.55
4608 5219 2.877097 ACTGCATTGGACACATGGTA 57.123 45.000 0.00 0.00 0.00 3.25
4609 5220 2.436417 ACTGCATTGGACACATGGTAC 58.564 47.619 0.00 0.00 0.00 3.34
4610 5221 1.745087 CTGCATTGGACACATGGTACC 59.255 52.381 4.43 4.43 0.00 3.34
4611 5222 1.102978 GCATTGGACACATGGTACCC 58.897 55.000 10.07 0.00 0.00 3.69
4612 5223 1.762708 CATTGGACACATGGTACCCC 58.237 55.000 10.07 2.24 0.00 4.95
4613 5224 1.284785 CATTGGACACATGGTACCCCT 59.715 52.381 10.07 0.00 0.00 4.79
4614 5225 1.451449 TTGGACACATGGTACCCCTT 58.549 50.000 10.07 0.00 0.00 3.95
4615 5226 1.451449 TGGACACATGGTACCCCTTT 58.549 50.000 10.07 0.00 0.00 3.11
4616 5227 1.783979 TGGACACATGGTACCCCTTTT 59.216 47.619 10.07 0.00 0.00 2.27
4617 5228 2.987437 TGGACACATGGTACCCCTTTTA 59.013 45.455 10.07 0.00 0.00 1.52
4618 5229 3.594232 TGGACACATGGTACCCCTTTTAT 59.406 43.478 10.07 0.00 0.00 1.40
4619 5230 4.789159 TGGACACATGGTACCCCTTTTATA 59.211 41.667 10.07 0.00 0.00 0.98
4620 5231 5.104277 TGGACACATGGTACCCCTTTTATAG 60.104 44.000 10.07 0.00 0.00 1.31
4646 5257 9.052759 GTTTTATAAAATGAGCTATCCGAGGAA 57.947 33.333 13.54 0.00 0.00 3.36
4647 5258 9.793259 TTTTATAAAATGAGCTATCCGAGGAAT 57.207 29.630 6.54 0.00 0.00 3.01
4650 5261 3.674528 ATGAGCTATCCGAGGAATGTG 57.325 47.619 0.00 0.00 0.00 3.21
4655 5270 4.192317 AGCTATCCGAGGAATGTGTTTTC 58.808 43.478 0.00 0.00 0.00 2.29
4660 5275 4.817517 TCCGAGGAATGTGTTTTCTCTAC 58.182 43.478 0.00 0.00 0.00 2.59
4666 5281 2.902705 TGTGTTTTCTCTACGGCAGT 57.097 45.000 0.00 0.00 0.00 4.40
4677 5292 5.622180 TCTCTACGGCAGTACTCTGATATT 58.378 41.667 0.00 0.00 43.76 1.28
4690 5305 9.236006 AGTACTCTGATATTTTGCTTGAATTGT 57.764 29.630 0.00 0.00 0.00 2.71
4792 5407 2.440980 GCTGGAATGTCAGGCCCC 60.441 66.667 0.00 0.00 35.43 5.80
4868 5483 1.043116 ATCCTCATTCCGGTCGAGCA 61.043 55.000 15.89 0.00 0.00 4.26
4945 5560 0.971447 GGGTCTACTCTGCTTCCGGT 60.971 60.000 0.00 0.00 0.00 5.28
4972 5587 2.498167 CACTCTCTCAACACCCAAAGG 58.502 52.381 0.00 0.00 40.04 3.11
4990 5605 2.704572 AGGCCTTTCAGAAACTCATCG 58.295 47.619 0.00 0.00 0.00 3.84
5056 5671 3.155167 CCCTACCTCCGCACCTCC 61.155 72.222 0.00 0.00 0.00 4.30
5084 5699 1.915769 GGAGGCTCCACACACTCCT 60.916 63.158 28.55 0.00 44.74 3.69
5130 5745 6.317088 CACCAGTCAACATAAGTTATGCTTG 58.683 40.000 20.52 20.56 39.79 4.01
5161 5776 3.246226 CGCAGATGTACAATTCTGGCTAC 59.754 47.826 22.09 9.14 39.79 3.58
5335 5950 0.533531 CTCAGTCACCACAGCAGCAA 60.534 55.000 0.00 0.00 0.00 3.91
5380 6001 3.200593 GACTCGGACGCGAGCCTA 61.201 66.667 15.93 4.86 39.42 3.93
5422 6043 2.125912 CAGTCCTTCCGGCAGTCG 60.126 66.667 0.00 0.00 38.88 4.18
5519 6141 2.159099 TGATTATGGCGAGTCGAAGCTT 60.159 45.455 18.61 0.00 0.00 3.74
5541 6166 5.201713 TGATCAGAACTCTTCTTCGTTGT 57.798 39.130 0.00 0.00 38.11 3.32
5629 6254 1.423395 GTTGCCTGAAGAGTGAGTCG 58.577 55.000 0.00 0.00 0.00 4.18
5658 6285 8.038862 AGGGAGAGAGAATTGCATAGATTTTA 57.961 34.615 0.00 0.00 0.00 1.52
5717 6345 8.664798 TCTAGTGATTGTGTGGATTTATTTTCG 58.335 33.333 0.00 0.00 0.00 3.46
5746 6374 9.367444 GCTTATGGATGTACATTACAGGTATAC 57.633 37.037 10.30 0.00 42.77 1.47
5795 6423 2.247358 CTTTGCCTTGGTGGTTATGGT 58.753 47.619 0.00 0.00 38.35 3.55
5883 6812 0.813821 TGATCACTGCTCTCTGTCCG 59.186 55.000 0.00 0.00 0.00 4.79
5914 6849 4.991687 GGGGCTCATTTATCTCGTCTTTAG 59.008 45.833 0.00 0.00 0.00 1.85
6168 7632 6.966534 AATCTCCCAATCATACCATGTTTC 57.033 37.500 0.00 0.00 0.00 2.78
6172 7636 3.489059 CCCAATCATACCATGTTTCGTGC 60.489 47.826 0.00 0.00 0.00 5.34
6181 7645 3.317711 ACCATGTTTCGTGCTGAATTTGA 59.682 39.130 0.00 0.00 36.22 2.69
6287 7792 5.478332 AGAAGGCTCAACAAATTTTAGGAGG 59.522 40.000 10.21 0.00 0.00 4.30
6364 7869 4.215109 ACTGGCACAACCTTTGTAGATTT 58.785 39.130 0.00 0.00 43.23 2.17
6490 8008 5.637810 GCCATTTTGCCTTCCTTTTAAGTAC 59.362 40.000 0.00 0.00 0.00 2.73
6494 8012 5.578157 TTGCCTTCCTTTTAAGTACTCCT 57.422 39.130 0.00 0.00 0.00 3.69
6499 8017 5.251005 CCTTCCTTTTAAGTACTCCTCCCTT 59.749 44.000 0.00 0.00 0.00 3.95
6504 8022 1.849977 AAGTACTCCTCCCTTCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
6505 8023 0.033306 AGTACTCCTCCCTTCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46
6518 8036 6.225318 TCCCTTCGTCCCATAATATAAAACG 58.775 40.000 0.00 0.00 0.00 3.60
6562 8080 6.195700 AGGGAGTAGATGAGTAAGCTTAACA 58.804 40.000 7.99 11.87 0.00 2.41
6572 8090 6.506147 TGAGTAAGCTTAACACTGTTTACGA 58.494 36.000 7.99 0.00 35.83 3.43
6613 8137 4.909696 ATGTGACTGATAACGAGAGAGG 57.090 45.455 0.00 0.00 0.00 3.69
6621 8147 4.781934 TGATAACGAGAGAGGAGTCATGA 58.218 43.478 0.00 0.00 0.00 3.07
6856 8417 4.847367 GGCAGGGCAAGATGGGGG 62.847 72.222 0.00 0.00 0.00 5.40
6865 8426 0.323633 CAAGATGGGGGATGTGTGCA 60.324 55.000 0.00 0.00 0.00 4.57
6904 8465 1.671379 GTGTGGGAGAAGAACCGCC 60.671 63.158 0.00 0.00 36.44 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.618805 GCTCCTAGAGTTAAAACTTTTGCTCG 60.619 42.308 0.00 0.00 39.88 5.03
1 2 6.348622 GGCTCCTAGAGTTAAAACTTTTGCTC 60.349 42.308 0.00 10.35 39.88 4.26
41 42 8.320338 AGATAGCTATAACTAACCAGGTTTGT 57.680 34.615 11.02 12.24 33.49 2.83
54 55 7.093992 GTGATCAACCAGGAGATAGCTATAAC 58.906 42.308 6.13 3.76 0.00 1.89
55 56 6.782494 TGTGATCAACCAGGAGATAGCTATAA 59.218 38.462 6.13 0.00 0.00 0.98
56 57 6.314917 TGTGATCAACCAGGAGATAGCTATA 58.685 40.000 6.13 0.00 0.00 1.31
75 76 3.181454 ACGAACCAAAGACCTCTTGTGAT 60.181 43.478 0.00 0.00 36.12 3.06
100 101 3.912496 TGCGGGATATCCAGGATAATG 57.088 47.619 23.27 5.00 37.91 1.90
280 281 2.410730 GCATGTGCTTGTTCATTGCTTC 59.589 45.455 0.00 0.00 38.21 3.86
319 320 5.154222 GGCTGTTGTTTGTAGTATTTGAGC 58.846 41.667 0.00 0.00 0.00 4.26
344 345 2.210144 TTAGTGCATGGGGGCCAGAC 62.210 60.000 4.39 0.00 36.75 3.51
382 385 5.125739 AGTGATACCTAACCTCGACTCAAAG 59.874 44.000 0.00 0.00 0.00 2.77
441 449 3.119849 CCTGTATTTGTAGCTTGGTGTGC 60.120 47.826 0.00 0.00 0.00 4.57
615 629 1.692042 AGGCTGGAGGGGACATCAG 60.692 63.158 0.00 0.00 36.25 2.90
668 682 1.123077 TCTGTTATGCTGAGGCGGAT 58.877 50.000 0.00 0.00 42.25 4.18
694 709 5.072741 TGCTAGGAGATGAAAGTTGCTTTT 58.927 37.500 0.00 0.00 33.49 2.27
695 710 4.655963 TGCTAGGAGATGAAAGTTGCTTT 58.344 39.130 0.00 0.00 36.29 3.51
698 713 3.866651 TCTGCTAGGAGATGAAAGTTGC 58.133 45.455 10.30 0.00 0.00 4.17
699 714 6.808008 TTTTCTGCTAGGAGATGAAAGTTG 57.192 37.500 15.34 0.00 0.00 3.16
746 761 6.946340 TGAAGCTCAAACAGATGTATCCTAA 58.054 36.000 0.00 0.00 0.00 2.69
748 763 5.426689 TGAAGCTCAAACAGATGTATCCT 57.573 39.130 0.00 0.00 0.00 3.24
758 793 5.529430 TCCGAAATTAGTTGAAGCTCAAACA 59.471 36.000 12.51 0.00 38.22 2.83
816 1023 6.245408 AGCACCCTAATCAAGACATAAACAA 58.755 36.000 0.00 0.00 0.00 2.83
822 1029 4.660303 TGGATAGCACCCTAATCAAGACAT 59.340 41.667 0.00 0.00 0.00 3.06
963 1176 2.586648 AAATGGCGACCCTTTTCTCT 57.413 45.000 0.00 0.00 34.40 3.10
964 1177 3.255888 AGAAAAATGGCGACCCTTTTCTC 59.744 43.478 17.41 12.96 38.85 2.87
965 1178 3.005791 CAGAAAAATGGCGACCCTTTTCT 59.994 43.478 17.41 17.41 41.31 2.52
966 1179 3.317150 CAGAAAAATGGCGACCCTTTTC 58.683 45.455 14.17 14.17 37.46 2.29
967 1180 2.547855 GCAGAAAAATGGCGACCCTTTT 60.548 45.455 0.00 0.00 39.42 2.27
968 1181 1.000843 GCAGAAAAATGGCGACCCTTT 59.999 47.619 0.00 0.00 0.00 3.11
969 1182 0.603065 GCAGAAAAATGGCGACCCTT 59.397 50.000 0.00 0.00 0.00 3.95
970 1183 0.539438 TGCAGAAAAATGGCGACCCT 60.539 50.000 0.00 0.00 0.00 4.34
971 1184 0.109132 CTGCAGAAAAATGGCGACCC 60.109 55.000 8.42 0.00 0.00 4.46
972 1185 0.109132 CCTGCAGAAAAATGGCGACC 60.109 55.000 17.39 0.00 0.00 4.79
1059 1280 3.917760 GGCAGGGGATCGAGTCGG 61.918 72.222 13.54 0.00 0.00 4.79
1062 1283 4.095400 AGGGGCAGGGGATCGAGT 62.095 66.667 0.00 0.00 0.00 4.18
1220 1451 2.187946 GGGCACCGGAGATGTGAG 59.812 66.667 9.46 0.00 40.86 3.51
1232 1463 1.812686 GAAAAAGGGGGAACGGGCAC 61.813 60.000 0.00 0.00 0.00 5.01
1234 1465 2.280552 GGAAAAAGGGGGAACGGGC 61.281 63.158 0.00 0.00 0.00 6.13
1236 1467 1.712056 AAAGGAAAAAGGGGGAACGG 58.288 50.000 0.00 0.00 0.00 4.44
1237 1468 2.287970 CGAAAAGGAAAAAGGGGGAACG 60.288 50.000 0.00 0.00 0.00 3.95
1238 1469 2.036733 CCGAAAAGGAAAAAGGGGGAAC 59.963 50.000 0.00 0.00 45.00 3.62
1239 1470 2.321719 CCGAAAAGGAAAAAGGGGGAA 58.678 47.619 0.00 0.00 45.00 3.97
1240 1471 1.481615 CCCGAAAAGGAAAAAGGGGGA 60.482 52.381 0.00 0.00 45.00 4.81
1241 1472 0.973632 CCCGAAAAGGAAAAAGGGGG 59.026 55.000 0.00 0.00 45.00 5.40
1283 1518 1.090052 GGAAATTGACGAGGCGAGGG 61.090 60.000 0.00 0.00 0.00 4.30
1287 1522 1.090052 GGGAGGAAATTGACGAGGCG 61.090 60.000 0.00 0.00 0.00 5.52
1308 1543 0.391927 TATCCGCGTGACCCAAAAGG 60.392 55.000 4.92 0.00 43.78 3.11
1309 1544 1.444836 TTATCCGCGTGACCCAAAAG 58.555 50.000 4.92 0.00 0.00 2.27
1312 1547 0.609151 TCTTTATCCGCGTGACCCAA 59.391 50.000 4.92 0.00 0.00 4.12
1313 1548 0.828022 ATCTTTATCCGCGTGACCCA 59.172 50.000 4.92 0.00 0.00 4.51
1314 1549 1.949465 AATCTTTATCCGCGTGACCC 58.051 50.000 4.92 0.00 0.00 4.46
1315 1550 4.117685 ACTAAATCTTTATCCGCGTGACC 58.882 43.478 4.92 0.00 0.00 4.02
1316 1551 5.041940 AGACTAAATCTTTATCCGCGTGAC 58.958 41.667 4.92 0.00 31.62 3.67
1317 1552 5.258456 AGACTAAATCTTTATCCGCGTGA 57.742 39.130 4.92 1.95 31.62 4.35
1318 1553 5.728255 CAAGACTAAATCTTTATCCGCGTG 58.272 41.667 4.92 0.00 46.05 5.34
1319 1554 4.270325 GCAAGACTAAATCTTTATCCGCGT 59.730 41.667 4.92 0.00 46.05 6.01
1320 1555 4.606232 CGCAAGACTAAATCTTTATCCGCG 60.606 45.833 0.00 0.00 46.05 6.46
1321 1556 4.318831 CCGCAAGACTAAATCTTTATCCGC 60.319 45.833 0.00 0.00 46.05 5.54
1322 1557 4.318831 GCCGCAAGACTAAATCTTTATCCG 60.319 45.833 0.00 0.00 46.05 4.18
1323 1558 4.318831 CGCCGCAAGACTAAATCTTTATCC 60.319 45.833 0.00 0.00 46.05 2.59
1324 1559 4.318831 CCGCCGCAAGACTAAATCTTTATC 60.319 45.833 0.00 0.00 46.05 1.75
1358 1593 1.060937 CAAATAGTCAGCGCACGCC 59.939 57.895 11.47 0.00 43.17 5.68
1395 1630 3.929948 GCGAATCTGCCTTCCGCG 61.930 66.667 0.00 0.00 42.08 6.46
1416 1651 1.403780 CCCAACGACGGAAGGAGTAAG 60.404 57.143 0.00 0.00 0.00 2.34
1417 1652 0.604578 CCCAACGACGGAAGGAGTAA 59.395 55.000 0.00 0.00 0.00 2.24
1418 1653 0.540365 ACCCAACGACGGAAGGAGTA 60.540 55.000 0.00 0.00 0.00 2.59
1419 1654 1.405272 AACCCAACGACGGAAGGAGT 61.405 55.000 0.00 0.00 0.00 3.85
1424 1659 0.533308 CTGGAAACCCAACGACGGAA 60.533 55.000 0.00 0.00 32.40 4.30
1501 1742 4.518211 CACCAAAAGATCAGTCAGAAGCTT 59.482 41.667 0.00 0.00 0.00 3.74
1521 1762 2.676471 AAATCGGGCCACAGCACC 60.676 61.111 4.39 0.00 40.33 5.01
1530 1771 2.029918 GGATAGGCAAATCAAATCGGGC 60.030 50.000 2.81 0.00 0.00 6.13
1556 1797 3.627395 TGCATCCGACTGGTTTCTTAT 57.373 42.857 0.00 0.00 36.30 1.73
1566 1807 0.604780 GCTGGCATATGCATCCGACT 60.605 55.000 28.07 0.00 44.36 4.18
1568 1809 0.037160 ATGCTGGCATATGCATCCGA 59.963 50.000 28.07 8.84 45.50 4.55
1569 1810 2.563297 ATGCTGGCATATGCATCCG 58.437 52.632 28.07 13.83 45.50 4.18
1575 1816 4.092771 GCAAGTATGATGCTGGCATATG 57.907 45.455 4.94 0.00 40.64 1.78
1693 1935 6.311200 GCATAATTCCACCTGTTTCATTCAAC 59.689 38.462 0.00 0.00 0.00 3.18
1734 1976 5.230182 CAAACAGGAATAAAAGTTCTGCCC 58.770 41.667 0.00 0.00 0.00 5.36
1738 1983 6.098266 ACCAAGCAAACAGGAATAAAAGTTCT 59.902 34.615 0.00 0.00 0.00 3.01
1787 2032 3.270027 CAGACTTATCACATTCCGCCAA 58.730 45.455 0.00 0.00 0.00 4.52
1805 2050 8.267894 AGATTAGTACTAGTAACCGTAACCAGA 58.732 37.037 3.61 0.00 0.00 3.86
1812 2057 7.279758 GTGAGTGAGATTAGTACTAGTAACCGT 59.720 40.741 3.61 0.00 0.00 4.83
1813 2058 7.254727 GGTGAGTGAGATTAGTACTAGTAACCG 60.255 44.444 3.61 0.00 0.00 4.44
1814 2059 7.555554 TGGTGAGTGAGATTAGTACTAGTAACC 59.444 40.741 3.61 4.54 0.00 2.85
1815 2060 8.397148 GTGGTGAGTGAGATTAGTACTAGTAAC 58.603 40.741 3.61 0.00 0.00 2.50
1816 2061 8.105197 TGTGGTGAGTGAGATTAGTACTAGTAA 58.895 37.037 3.61 0.00 0.00 2.24
1817 2062 7.627311 TGTGGTGAGTGAGATTAGTACTAGTA 58.373 38.462 2.23 0.00 0.00 1.82
1818 2063 6.482524 TGTGGTGAGTGAGATTAGTACTAGT 58.517 40.000 0.00 0.00 0.00 2.57
1838 2083 6.038356 GCAATTTCCTGAACTTATCATGTGG 58.962 40.000 0.00 0.00 37.44 4.17
1852 2097 5.047519 ACTCCAAATCTTCAGCAATTTCCTG 60.048 40.000 0.00 0.00 0.00 3.86
1857 2102 6.376581 CCTAGAACTCCAAATCTTCAGCAATT 59.623 38.462 0.00 0.00 0.00 2.32
1898 2143 7.228906 TCCAACGTTATCCACAAATAAGTCAAA 59.771 33.333 0.00 0.00 0.00 2.69
1899 2144 6.711194 TCCAACGTTATCCACAAATAAGTCAA 59.289 34.615 0.00 0.00 0.00 3.18
1906 2151 4.261801 CCTCTCCAACGTTATCCACAAAT 58.738 43.478 0.00 0.00 0.00 2.32
1910 2155 1.553704 ACCCTCTCCAACGTTATCCAC 59.446 52.381 0.00 0.00 0.00 4.02
1912 2157 2.108970 AGACCCTCTCCAACGTTATCC 58.891 52.381 0.00 0.00 0.00 2.59
1913 2158 3.522553 CAAGACCCTCTCCAACGTTATC 58.477 50.000 0.00 0.00 0.00 1.75
1915 2160 1.001633 GCAAGACCCTCTCCAACGTTA 59.998 52.381 0.00 0.00 0.00 3.18
1922 2167 1.073923 TCCAAAAGCAAGACCCTCTCC 59.926 52.381 0.00 0.00 0.00 3.71
1929 2174 8.069574 CCAACAATAAATTTCCAAAAGCAAGAC 58.930 33.333 0.00 0.00 0.00 3.01
1935 2180 7.307930 GGACAGCCAACAATAAATTTCCAAAAG 60.308 37.037 0.00 0.00 0.00 2.27
1948 2193 0.675633 GCAACTGGACAGCCAACAAT 59.324 50.000 0.00 0.00 45.41 2.71
1963 2208 3.569250 AAACACGGTTATGATGGCAAC 57.431 42.857 0.00 0.00 0.00 4.17
1972 2217 7.469537 TTTCCATTTCCATAAACACGGTTAT 57.530 32.000 0.00 0.00 0.00 1.89
1991 2236 9.504708 TTTAGTAAAGGAATCACGTATTTTCCA 57.495 29.630 19.56 3.22 41.15 3.53
2010 2255 8.692710 CCATCACATAGTGTAGACCTTTAGTAA 58.307 37.037 0.00 0.00 34.79 2.24
2011 2256 7.287005 CCCATCACATAGTGTAGACCTTTAGTA 59.713 40.741 0.00 0.00 34.79 1.82
2012 2257 6.098409 CCCATCACATAGTGTAGACCTTTAGT 59.902 42.308 0.00 0.00 34.79 2.24
2013 2258 6.323996 TCCCATCACATAGTGTAGACCTTTAG 59.676 42.308 0.00 0.00 34.79 1.85
2023 2272 3.330701 ACCTTGTTCCCATCACATAGTGT 59.669 43.478 0.00 0.00 34.79 3.55
2087 2336 3.243724 ACAAGAAACAGAGTCTAGCCCT 58.756 45.455 0.00 0.00 0.00 5.19
2090 2339 3.903360 ACGACAAGAAACAGAGTCTAGC 58.097 45.455 0.00 0.00 0.00 3.42
2094 2343 6.200286 TCACAAATACGACAAGAAACAGAGTC 59.800 38.462 0.00 0.00 0.00 3.36
2096 2345 6.355638 GTCACAAATACGACAAGAAACAGAG 58.644 40.000 0.00 0.00 32.24 3.35
2097 2346 5.235616 GGTCACAAATACGACAAGAAACAGA 59.764 40.000 0.00 0.00 33.66 3.41
2098 2347 5.236478 AGGTCACAAATACGACAAGAAACAG 59.764 40.000 0.00 0.00 33.66 3.16
2099 2348 5.007234 CAGGTCACAAATACGACAAGAAACA 59.993 40.000 0.00 0.00 33.66 2.83
2100 2349 5.007332 ACAGGTCACAAATACGACAAGAAAC 59.993 40.000 0.00 0.00 33.66 2.78
2104 2356 5.107220 GGTAACAGGTCACAAATACGACAAG 60.107 44.000 0.00 0.00 33.66 3.16
2137 2389 6.572519 CCCACAGGTTCCAAATAATTACATG 58.427 40.000 0.00 0.00 0.00 3.21
2161 2413 5.355350 ACATAGAGAATTACAGGCTTTGCAC 59.645 40.000 0.00 0.00 0.00 4.57
2173 2425 9.362539 GACTTTTACACGGAACATAGAGAATTA 57.637 33.333 0.00 0.00 0.00 1.40
2180 2432 4.092968 GCAGGACTTTTACACGGAACATAG 59.907 45.833 0.00 0.00 0.00 2.23
2184 2436 2.479275 GAGCAGGACTTTTACACGGAAC 59.521 50.000 0.00 0.00 0.00 3.62
2257 2509 0.872388 ACGATTCCTGCAACGGAAAC 59.128 50.000 11.13 7.99 45.53 2.78
2258 2510 2.343101 CTACGATTCCTGCAACGGAAA 58.657 47.619 11.13 0.00 45.53 3.13
2320 2572 1.132453 CTCCACAAGCACTCGACGATA 59.868 52.381 0.00 0.00 0.00 2.92
2321 2573 0.109086 CTCCACAAGCACTCGACGAT 60.109 55.000 0.00 0.00 0.00 3.73
2334 2586 0.542333 TTCAAACCCACGTCTCCACA 59.458 50.000 0.00 0.00 0.00 4.17
2336 2588 0.534203 GCTTCAAACCCACGTCTCCA 60.534 55.000 0.00 0.00 0.00 3.86
2373 2625 5.475564 AGGTTACAACTACGCAATGGAAAAT 59.524 36.000 0.00 0.00 0.00 1.82
2378 2630 3.071479 ACAGGTTACAACTACGCAATGG 58.929 45.455 0.00 0.00 0.00 3.16
2389 2641 6.210984 ACCCAACTTGTTTTTACAGGTTACAA 59.789 34.615 5.63 0.00 37.74 2.41
2442 2696 5.028549 GGAGATAACATTGCTCCTTGAGA 57.971 43.478 0.00 0.00 43.79 3.27
2585 2839 7.200434 AGTTGGTAGATGATGGTAAGATGTT 57.800 36.000 0.00 0.00 0.00 2.71
2671 2925 8.110860 ACATTAGCACCTAAATATGCCATAAC 57.889 34.615 0.00 0.00 43.12 1.89
2776 3030 0.946221 GAGTTGGCAGGACACAGACG 60.946 60.000 0.00 0.00 0.00 4.18
2874 3129 3.053359 AGGAATGGAGGGAGTAGAAGG 57.947 52.381 0.00 0.00 0.00 3.46
2879 3134 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
2880 3135 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
2881 3136 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
2882 3137 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
2883 3138 9.289782 CAAAGACTTATATTTAGGAATGGAGGG 57.710 37.037 0.00 0.00 0.00 4.30
2884 3139 9.853177 ACAAAGACTTATATTTAGGAATGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
2899 3154 9.307121 CATCGTGAAATCTCTACAAAGACTTAT 57.693 33.333 0.00 0.00 0.00 1.73
2900 3155 7.759886 CCATCGTGAAATCTCTACAAAGACTTA 59.240 37.037 0.00 0.00 0.00 2.24
2901 3156 6.591834 CCATCGTGAAATCTCTACAAAGACTT 59.408 38.462 0.00 0.00 0.00 3.01
2902 3157 6.071334 TCCATCGTGAAATCTCTACAAAGACT 60.071 38.462 0.00 0.00 0.00 3.24
2903 3158 6.035112 GTCCATCGTGAAATCTCTACAAAGAC 59.965 42.308 0.00 0.00 0.00 3.01
2904 3159 6.071334 AGTCCATCGTGAAATCTCTACAAAGA 60.071 38.462 0.00 0.00 0.00 2.52
2905 3160 6.102663 AGTCCATCGTGAAATCTCTACAAAG 58.897 40.000 0.00 0.00 0.00 2.77
2906 3161 6.037786 AGTCCATCGTGAAATCTCTACAAA 57.962 37.500 0.00 0.00 0.00 2.83
2907 3162 5.661056 AGTCCATCGTGAAATCTCTACAA 57.339 39.130 0.00 0.00 0.00 2.41
2908 3163 5.650703 TGTAGTCCATCGTGAAATCTCTACA 59.349 40.000 0.00 0.00 34.82 2.74
2909 3164 6.132791 TGTAGTCCATCGTGAAATCTCTAC 57.867 41.667 0.00 0.00 0.00 2.59
2910 3165 6.961360 ATGTAGTCCATCGTGAAATCTCTA 57.039 37.500 0.00 0.00 0.00 2.43
2911 3166 5.860941 ATGTAGTCCATCGTGAAATCTCT 57.139 39.130 0.00 0.00 0.00 3.10
2912 3167 5.921408 GGTATGTAGTCCATCGTGAAATCTC 59.079 44.000 0.00 0.00 34.86 2.75
2913 3168 5.507482 CGGTATGTAGTCCATCGTGAAATCT 60.507 44.000 0.00 0.00 34.86 2.40
2914 3169 4.680110 CGGTATGTAGTCCATCGTGAAATC 59.320 45.833 0.00 0.00 34.86 2.17
2915 3170 4.340097 TCGGTATGTAGTCCATCGTGAAAT 59.660 41.667 0.00 0.00 34.86 2.17
2916 3171 3.695556 TCGGTATGTAGTCCATCGTGAAA 59.304 43.478 0.00 0.00 34.86 2.69
2917 3172 3.281158 TCGGTATGTAGTCCATCGTGAA 58.719 45.455 0.00 0.00 34.86 3.18
2918 3173 2.876550 CTCGGTATGTAGTCCATCGTGA 59.123 50.000 0.00 0.00 34.86 4.35
2919 3174 2.617308 ACTCGGTATGTAGTCCATCGTG 59.383 50.000 0.00 0.00 34.86 4.35
2920 3175 2.928334 ACTCGGTATGTAGTCCATCGT 58.072 47.619 0.00 0.00 34.86 3.73
2921 3176 5.428496 TTTACTCGGTATGTAGTCCATCG 57.572 43.478 0.00 0.00 34.86 3.84
2922 3177 7.431249 TCATTTTACTCGGTATGTAGTCCATC 58.569 38.462 0.00 0.00 34.86 3.51
2923 3178 7.069578 ACTCATTTTACTCGGTATGTAGTCCAT 59.930 37.037 0.00 0.00 37.58 3.41
2924 3179 6.379133 ACTCATTTTACTCGGTATGTAGTCCA 59.621 38.462 0.00 0.00 0.00 4.02
2925 3180 6.696148 CACTCATTTTACTCGGTATGTAGTCC 59.304 42.308 0.00 0.00 0.00 3.85
2926 3181 7.478322 TCACTCATTTTACTCGGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
2927 3182 7.400599 TCACTCATTTTACTCGGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
2928 3183 8.873215 ATTCACTCATTTTACTCGGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
2929 3184 8.692710 AGATTCACTCATTTTACTCGGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
2930 3185 7.556844 AGATTCACTCATTTTACTCGGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
2931 3186 8.969267 GTAGATTCACTCATTTTACTCGGTATG 58.031 37.037 0.00 0.00 0.00 2.39
2932 3187 8.692710 TGTAGATTCACTCATTTTACTCGGTAT 58.307 33.333 0.00 0.00 0.00 2.73
2933 3188 7.972277 GTGTAGATTCACTCATTTTACTCGGTA 59.028 37.037 0.00 0.00 35.68 4.02
2934 3189 6.812160 GTGTAGATTCACTCATTTTACTCGGT 59.188 38.462 0.00 0.00 35.68 4.69
2935 3190 7.036220 AGTGTAGATTCACTCATTTTACTCGG 58.964 38.462 0.00 0.00 44.07 4.63
2948 3203 7.038659 AGATGCAGTTTAGAGTGTAGATTCAC 58.961 38.462 0.00 0.00 38.46 3.18
2949 3204 7.175347 AGATGCAGTTTAGAGTGTAGATTCA 57.825 36.000 0.00 0.00 0.00 2.57
2950 3205 8.191446 TGTAGATGCAGTTTAGAGTGTAGATTC 58.809 37.037 0.00 0.00 0.00 2.52
2951 3206 8.067751 TGTAGATGCAGTTTAGAGTGTAGATT 57.932 34.615 0.00 0.00 0.00 2.40
2952 3207 7.646548 TGTAGATGCAGTTTAGAGTGTAGAT 57.353 36.000 0.00 0.00 0.00 1.98
2953 3208 7.646548 ATGTAGATGCAGTTTAGAGTGTAGA 57.353 36.000 0.00 0.00 0.00 2.59
2954 3209 8.406297 TGTATGTAGATGCAGTTTAGAGTGTAG 58.594 37.037 0.00 0.00 0.00 2.74
2955 3210 8.288689 TGTATGTAGATGCAGTTTAGAGTGTA 57.711 34.615 0.00 0.00 0.00 2.90
2956 3211 7.170393 TGTATGTAGATGCAGTTTAGAGTGT 57.830 36.000 0.00 0.00 0.00 3.55
2957 3212 7.383572 GGATGTATGTAGATGCAGTTTAGAGTG 59.616 40.741 0.00 0.00 0.00 3.51
2958 3213 7.437748 GGATGTATGTAGATGCAGTTTAGAGT 58.562 38.462 0.00 0.00 0.00 3.24
2959 3214 6.584184 CGGATGTATGTAGATGCAGTTTAGAG 59.416 42.308 0.00 0.00 0.00 2.43
2960 3215 6.040504 ACGGATGTATGTAGATGCAGTTTAGA 59.959 38.462 0.00 0.00 0.00 2.10
2961 3216 6.216569 ACGGATGTATGTAGATGCAGTTTAG 58.783 40.000 0.00 0.00 0.00 1.85
2962 3217 6.156748 ACGGATGTATGTAGATGCAGTTTA 57.843 37.500 0.00 0.00 0.00 2.01
2963 3218 5.023533 ACGGATGTATGTAGATGCAGTTT 57.976 39.130 0.00 0.00 0.00 2.66
2964 3219 4.672587 ACGGATGTATGTAGATGCAGTT 57.327 40.909 0.00 0.00 0.00 3.16
2965 3220 5.984695 ATACGGATGTATGTAGATGCAGT 57.015 39.130 0.00 0.00 39.81 4.40
2976 3231 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
2977 3232 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
2979 3234 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
2980 3235 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
2981 3236 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
2982 3237 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
2983 3238 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
2984 3239 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
2985 3240 6.042093 GGAGAGATTCCACTATGAACCACATA 59.958 42.308 0.00 0.00 46.01 2.29
2986 3241 5.163258 GGAGAGATTCCACTATGAACCACAT 60.163 44.000 0.00 0.00 46.01 3.21
2987 3242 4.162320 GGAGAGATTCCACTATGAACCACA 59.838 45.833 0.00 0.00 46.01 4.17
2988 3243 4.698575 GGAGAGATTCCACTATGAACCAC 58.301 47.826 0.00 0.00 46.01 4.16
3005 3260 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
3006 3261 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
3007 3262 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
3008 3263 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
3009 3264 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
3010 3265 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3011 3266 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3012 3267 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3013 3268 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3014 3269 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3015 3270 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3016 3271 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3017 3272 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3018 3273 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3019 3274 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3020 3275 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3021 3276 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3022 3277 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3023 3278 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3024 3279 3.094572 CAAAGTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
3025 3280 1.900486 CAAAGTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
3026 3281 1.675116 GCAAAGTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
3027 3282 1.001633 TGCAAAGTACTCCCTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
3028 3283 1.053424 TGCAAAGTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
3029 3284 0.320697 GTGCAAAGTACTCCCTCCGT 59.679 55.000 0.00 0.00 0.00 4.69
3030 3285 0.608640 AGTGCAAAGTACTCCCTCCG 59.391 55.000 0.00 0.00 0.00 4.63
3031 3286 2.303311 AGAAGTGCAAAGTACTCCCTCC 59.697 50.000 0.00 0.00 0.00 4.30
3032 3287 3.259625 AGAGAAGTGCAAAGTACTCCCTC 59.740 47.826 0.00 8.45 32.55 4.30
3033 3288 3.007398 CAGAGAAGTGCAAAGTACTCCCT 59.993 47.826 0.00 0.00 0.00 4.20
3034 3289 3.244249 ACAGAGAAGTGCAAAGTACTCCC 60.244 47.826 0.00 0.00 0.00 4.30
3035 3290 3.743396 CACAGAGAAGTGCAAAGTACTCC 59.257 47.826 0.00 0.00 32.04 3.85
3036 3291 3.743396 CCACAGAGAAGTGCAAAGTACTC 59.257 47.826 0.00 0.00 38.18 2.59
3037 3292 3.388024 TCCACAGAGAAGTGCAAAGTACT 59.612 43.478 0.00 0.00 38.18 2.73
3038 3293 3.728845 TCCACAGAGAAGTGCAAAGTAC 58.271 45.455 0.00 0.00 38.18 2.73
3051 3306 2.077413 GTCTTGCAGACTCCACAGAG 57.923 55.000 8.50 0.00 41.88 3.35
3073 3328 9.494479 CAAAGTACATAACATAATGCAGAGTTG 57.506 33.333 0.00 0.00 0.00 3.16
3374 3629 2.561569 ACCAGAACTCCACTGTTTTCG 58.438 47.619 0.00 0.00 34.04 3.46
3424 3679 4.944930 TGAAAGGTGAAAAAGAAGAACGGA 59.055 37.500 0.00 0.00 0.00 4.69
3425 3680 5.243426 TGAAAGGTGAAAAAGAAGAACGG 57.757 39.130 0.00 0.00 0.00 4.44
3439 3694 4.194640 CCATCTACAGGACATGAAAGGTG 58.805 47.826 0.00 0.00 0.00 4.00
3813 4089 0.539669 TCGACCAGGCTGAGTTCTCA 60.540 55.000 17.94 2.49 0.00 3.27
3987 4263 3.989817 GCACTTTGGTGAAAATAAGGCTG 59.010 43.478 0.00 0.00 45.61 4.85
4133 4409 7.174426 GGCAAGGTACTAGTTTCTACAAAACAT 59.826 37.037 0.00 0.00 38.49 2.71
4140 4416 7.389607 TCAAATTGGCAAGGTACTAGTTTCTAC 59.610 37.037 5.96 0.00 38.49 2.59
4143 4419 6.569179 TCAAATTGGCAAGGTACTAGTTTC 57.431 37.500 5.96 0.00 38.49 2.78
4159 4437 2.354003 GGTGTGGCCAAGGATCAAATTG 60.354 50.000 7.24 0.00 37.17 2.32
4160 4438 1.901833 GGTGTGGCCAAGGATCAAATT 59.098 47.619 7.24 0.00 37.17 1.82
4172 4450 4.021456 GCCTAAAATATTATGGGTGTGGCC 60.021 45.833 0.00 0.00 0.00 5.36
4185 4463 8.329502 AGAGGTGACTAGTTTTGCCTAAAATAT 58.670 33.333 0.00 0.00 44.43 1.28
4268 4546 2.678336 CAAACAGATTCGGAACCTAGCC 59.322 50.000 0.00 0.00 0.00 3.93
4274 4552 3.042887 GTTGTGCAAACAGATTCGGAAC 58.957 45.455 0.00 0.00 0.00 3.62
4277 4555 1.336440 TGGTTGTGCAAACAGATTCGG 59.664 47.619 11.93 0.00 32.22 4.30
4278 4556 2.772568 TGGTTGTGCAAACAGATTCG 57.227 45.000 11.93 0.00 32.22 3.34
4292 4570 4.740741 TTACACATCGACACAATGGTTG 57.259 40.909 0.00 0.00 0.00 3.77
4293 4571 7.441890 TTTATTACACATCGACACAATGGTT 57.558 32.000 0.00 0.00 0.00 3.67
4295 4575 7.526608 AGTTTTATTACACATCGACACAATGG 58.473 34.615 0.00 0.00 0.00 3.16
4296 4576 8.227119 TGAGTTTTATTACACATCGACACAATG 58.773 33.333 0.00 0.00 0.00 2.82
4298 4578 7.439955 AGTGAGTTTTATTACACATCGACACAA 59.560 33.333 0.00 0.00 35.97 3.33
4306 4586 9.998106 AGTAGTTCAGTGAGTTTTATTACACAT 57.002 29.630 0.00 0.00 35.97 3.21
4319 4599 7.840342 AATAAATGCAGAGTAGTTCAGTGAG 57.160 36.000 0.00 0.00 0.00 3.51
4321 4601 8.506437 TGAAAATAAATGCAGAGTAGTTCAGTG 58.494 33.333 0.00 0.00 0.00 3.66
4325 4605 9.282247 CACATGAAAATAAATGCAGAGTAGTTC 57.718 33.333 0.00 0.00 0.00 3.01
4351 4667 2.206576 AGGATCTTCAAGTGCCAACC 57.793 50.000 0.00 0.00 0.00 3.77
4357 4673 7.102346 ACTATGTTCTCAAGGATCTTCAAGTG 58.898 38.462 0.00 0.00 0.00 3.16
4381 4945 8.331022 CGGCACAATATCAGCATTCTATATTAC 58.669 37.037 0.00 0.00 0.00 1.89
4382 4946 7.011389 GCGGCACAATATCAGCATTCTATATTA 59.989 37.037 0.00 0.00 0.00 0.98
4389 4963 1.335324 GGCGGCACAATATCAGCATTC 60.335 52.381 3.07 0.00 0.00 2.67
4393 4967 1.356624 GTGGCGGCACAATATCAGC 59.643 57.895 34.40 5.93 0.00 4.26
4397 4971 1.761449 TTCATGTGGCGGCACAATAT 58.239 45.000 42.58 27.29 38.69 1.28
4400 4974 1.106351 ACTTTCATGTGGCGGCACAA 61.106 50.000 42.58 28.02 38.69 3.33
4403 4977 1.523154 GGAACTTTCATGTGGCGGCA 61.523 55.000 7.97 7.97 0.00 5.69
4404 4978 1.212751 GGAACTTTCATGTGGCGGC 59.787 57.895 0.00 0.00 0.00 6.53
4406 4980 2.988493 CAATTGGAACTTTCATGTGGCG 59.012 45.455 0.00 0.00 0.00 5.69
4407 4981 2.738314 GCAATTGGAACTTTCATGTGGC 59.262 45.455 7.72 0.00 0.00 5.01
4408 4982 3.992643 TGCAATTGGAACTTTCATGTGG 58.007 40.909 7.72 0.00 0.00 4.17
4409 4983 6.548441 AAATGCAATTGGAACTTTCATGTG 57.452 33.333 2.94 0.00 36.10 3.21
4411 4985 6.961576 ACAAAATGCAATTGGAACTTTCATG 58.038 32.000 16.96 0.60 36.10 3.07
4412 4986 8.851541 ATACAAAATGCAATTGGAACTTTCAT 57.148 26.923 16.96 0.00 36.10 2.57
4414 4988 9.597999 GAAATACAAAATGCAATTGGAACTTTC 57.402 29.630 16.96 12.82 36.10 2.62
4415 4989 8.567104 GGAAATACAAAATGCAATTGGAACTTT 58.433 29.630 16.96 4.25 36.10 2.66
4416 4990 7.938490 AGGAAATACAAAATGCAATTGGAACTT 59.062 29.630 16.96 8.61 36.10 2.66
4418 4992 7.671495 AGGAAATACAAAATGCAATTGGAAC 57.329 32.000 16.96 7.23 36.10 3.62
4419 4993 7.308469 GCAAGGAAATACAAAATGCAATTGGAA 60.308 33.333 16.96 7.61 36.10 3.53
4420 4994 6.149142 GCAAGGAAATACAAAATGCAATTGGA 59.851 34.615 16.96 4.46 36.10 3.53
4422 4996 6.016718 CGCAAGGAAATACAAAATGCAATTG 58.983 36.000 12.56 12.56 36.10 2.32
4423 4997 5.931146 TCGCAAGGAAATACAAAATGCAATT 59.069 32.000 0.00 0.00 36.17 2.32
4424 4998 5.477510 TCGCAAGGAAATACAAAATGCAAT 58.522 33.333 0.00 0.00 38.47 3.56
4425 4999 4.876125 TCGCAAGGAAATACAAAATGCAA 58.124 34.783 0.00 0.00 38.47 4.08
4426 5000 4.217334 TCTCGCAAGGAAATACAAAATGCA 59.783 37.500 0.00 0.00 38.47 3.96
4427 5001 4.732784 TCTCGCAAGGAAATACAAAATGC 58.267 39.130 0.00 0.00 38.47 3.56
4428 5002 6.237648 GCAATCTCGCAAGGAAATACAAAATG 60.238 38.462 0.00 0.00 38.47 2.32
4429 5003 5.807011 GCAATCTCGCAAGGAAATACAAAAT 59.193 36.000 0.00 0.00 38.47 1.82
4430 5004 5.160641 GCAATCTCGCAAGGAAATACAAAA 58.839 37.500 0.00 0.00 38.47 2.44
4431 5005 4.217334 TGCAATCTCGCAAGGAAATACAAA 59.783 37.500 0.00 0.00 39.45 2.83
4432 5006 3.755905 TGCAATCTCGCAAGGAAATACAA 59.244 39.130 0.00 0.00 39.45 2.41
4433 5007 3.342719 TGCAATCTCGCAAGGAAATACA 58.657 40.909 0.00 0.00 39.45 2.29
4434 5008 4.531332 GATGCAATCTCGCAAGGAAATAC 58.469 43.478 0.00 0.00 46.87 1.89
4448 5026 9.962759 GTCAAAAATGAATTTACAGATGCAATC 57.037 29.630 0.00 0.00 46.04 2.67
4450 5028 8.883954 TGTCAAAAATGAATTTACAGATGCAA 57.116 26.923 0.00 0.00 0.00 4.08
4470 5048 9.902196 CAATTGCATAGCTTAATGATATGTCAA 57.098 29.630 0.00 14.28 44.39 3.18
4478 5056 9.341078 TGAATCTACAATTGCATAGCTTAATGA 57.659 29.630 5.05 0.00 0.00 2.57
4481 5059 9.341078 TGATGAATCTACAATTGCATAGCTTAA 57.659 29.630 5.05 0.00 0.00 1.85
4483 5061 7.501559 ACTGATGAATCTACAATTGCATAGCTT 59.498 33.333 5.05 0.00 0.00 3.74
4485 5063 7.041576 TGACTGATGAATCTACAATTGCATAGC 60.042 37.037 5.05 0.00 0.00 2.97
4487 5065 7.443272 CCTGACTGATGAATCTACAATTGCATA 59.557 37.037 5.05 0.00 0.00 3.14
4488 5066 6.262496 CCTGACTGATGAATCTACAATTGCAT 59.738 38.462 5.05 0.00 0.00 3.96
4489 5067 5.587443 CCTGACTGATGAATCTACAATTGCA 59.413 40.000 5.05 0.00 0.00 4.08
4490 5068 5.587844 ACCTGACTGATGAATCTACAATTGC 59.412 40.000 5.05 0.00 0.00 3.56
4491 5069 7.984050 ACTACCTGACTGATGAATCTACAATTG 59.016 37.037 3.24 3.24 0.00 2.32
4492 5070 8.083828 ACTACCTGACTGATGAATCTACAATT 57.916 34.615 0.00 0.00 0.00 2.32
4503 5081 6.741992 TTTTGCATTACTACCTGACTGATG 57.258 37.500 0.00 0.00 0.00 3.07
4568 5179 9.008965 TGCAGTACACTTTACATTAATGATTGT 57.991 29.630 22.16 16.38 0.00 2.71
4572 5183 8.458052 CCAATGCAGTACACTTTACATTAATGA 58.542 33.333 22.16 3.15 0.00 2.57
4573 5184 8.458052 TCCAATGCAGTACACTTTACATTAATG 58.542 33.333 14.01 14.01 0.00 1.90
4574 5185 8.458843 GTCCAATGCAGTACACTTTACATTAAT 58.541 33.333 0.00 0.00 0.00 1.40
4575 5186 7.445707 TGTCCAATGCAGTACACTTTACATTAA 59.554 33.333 0.00 0.00 0.00 1.40
4576 5187 6.937465 TGTCCAATGCAGTACACTTTACATTA 59.063 34.615 0.00 0.00 0.00 1.90
4577 5188 5.767665 TGTCCAATGCAGTACACTTTACATT 59.232 36.000 0.00 0.00 0.00 2.71
4578 5189 5.181245 GTGTCCAATGCAGTACACTTTACAT 59.819 40.000 11.85 0.00 39.27 2.29
4579 5190 4.513692 GTGTCCAATGCAGTACACTTTACA 59.486 41.667 11.85 0.00 39.27 2.41
4580 5191 4.513692 TGTGTCCAATGCAGTACACTTTAC 59.486 41.667 18.02 0.82 42.12 2.01
4581 5192 4.709250 TGTGTCCAATGCAGTACACTTTA 58.291 39.130 18.02 0.00 42.12 1.85
4582 5193 3.550820 TGTGTCCAATGCAGTACACTTT 58.449 40.909 18.02 0.00 42.12 2.66
4583 5194 3.207265 TGTGTCCAATGCAGTACACTT 57.793 42.857 18.02 0.00 42.12 3.16
4584 5195 2.928801 TGTGTCCAATGCAGTACACT 57.071 45.000 18.02 0.00 42.12 3.55
4585 5196 2.162208 CCATGTGTCCAATGCAGTACAC 59.838 50.000 12.14 12.14 42.00 2.90
4586 5197 2.224744 ACCATGTGTCCAATGCAGTACA 60.225 45.455 0.00 0.00 0.00 2.90
4587 5198 2.436417 ACCATGTGTCCAATGCAGTAC 58.564 47.619 0.00 0.00 0.00 2.73
4588 5199 2.877097 ACCATGTGTCCAATGCAGTA 57.123 45.000 0.00 0.00 0.00 2.74
4589 5200 2.436417 GTACCATGTGTCCAATGCAGT 58.564 47.619 0.00 0.00 0.00 4.40
4590 5201 1.745087 GGTACCATGTGTCCAATGCAG 59.255 52.381 7.15 0.00 0.00 4.41
4591 5202 1.832883 GGTACCATGTGTCCAATGCA 58.167 50.000 7.15 0.00 0.00 3.96
4618 5229 9.706691 CCTCGGATAGCTCATTTTATAAAACTA 57.293 33.333 12.74 9.89 0.00 2.24
4619 5230 8.429641 TCCTCGGATAGCTCATTTTATAAAACT 58.570 33.333 12.74 8.13 0.00 2.66
4620 5231 8.603242 TCCTCGGATAGCTCATTTTATAAAAC 57.397 34.615 12.74 0.94 0.00 2.43
4628 5239 4.141620 ACACATTCCTCGGATAGCTCATTT 60.142 41.667 0.00 0.00 0.00 2.32
4632 5243 3.460857 AACACATTCCTCGGATAGCTC 57.539 47.619 0.00 0.00 0.00 4.09
4637 5248 4.559862 AGAGAAAACACATTCCTCGGAT 57.440 40.909 0.00 0.00 0.00 4.18
4642 5253 3.244422 TGCCGTAGAGAAAACACATTCCT 60.244 43.478 0.00 0.00 0.00 3.36
4643 5254 3.071479 TGCCGTAGAGAAAACACATTCC 58.929 45.455 0.00 0.00 0.00 3.01
4646 5257 3.402628 ACTGCCGTAGAGAAAACACAT 57.597 42.857 0.00 0.00 0.00 3.21
4647 5258 2.902705 ACTGCCGTAGAGAAAACACA 57.097 45.000 0.00 0.00 0.00 3.72
4650 5261 4.082895 TCAGAGTACTGCCGTAGAGAAAAC 60.083 45.833 0.00 0.00 43.17 2.43
4655 5270 5.950758 AATATCAGAGTACTGCCGTAGAG 57.049 43.478 0.00 0.00 43.17 2.43
4660 5275 4.122776 AGCAAAATATCAGAGTACTGCCG 58.877 43.478 0.00 0.00 43.17 5.69
4666 5281 9.453572 AGACAATTCAAGCAAAATATCAGAGTA 57.546 29.630 0.00 0.00 0.00 2.59
4677 5292 4.098349 ACTCTGCAAGACAATTCAAGCAAA 59.902 37.500 3.37 0.00 38.67 3.68
4690 5305 1.817357 CTGCATGGAACTCTGCAAGA 58.183 50.000 0.00 0.00 44.23 3.02
4792 5407 1.303643 GGTGGTTTCTGAGGCAGGG 60.304 63.158 0.00 0.00 31.51 4.45
4801 5416 1.416030 GCAAACAATGGGGTGGTTTCT 59.584 47.619 0.00 0.00 32.79 2.52
4804 5419 1.416030 GAAGCAAACAATGGGGTGGTT 59.584 47.619 0.00 0.00 34.59 3.67
4830 5445 0.033504 TGACGGAGAAGGCAAGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
4945 5560 0.541063 TGTTGAGAGAGTGCGGGGTA 60.541 55.000 0.00 0.00 0.00 3.69
4972 5587 1.131315 GCCGATGAGTTTCTGAAAGGC 59.869 52.381 11.49 11.49 35.00 4.35
4990 5605 1.607628 CTTCTGCTTATGCTCATGGCC 59.392 52.381 0.00 0.00 40.92 5.36
5130 5745 3.323758 TACATCTGCGGTGGGGCAC 62.324 63.158 0.00 0.00 38.17 5.01
5335 5950 4.694233 CGCAGCAGCTGGGACTGT 62.694 66.667 30.90 0.00 45.41 3.55
5368 5989 1.810030 CAGGTTTAGGCTCGCGTCC 60.810 63.158 5.77 9.16 0.00 4.79
5422 6043 2.125512 CCGCAGTGCCTCAGGTAC 60.126 66.667 10.11 3.14 38.59 3.34
5519 6141 4.984785 CACAACGAAGAAGAGTTCTGATCA 59.015 41.667 0.00 0.00 40.59 2.92
5629 6254 1.556911 TGCAATTCTCTCTCCCTCACC 59.443 52.381 0.00 0.00 0.00 4.02
5717 6345 4.062293 TGTAATGTACATCCATAAGCGCC 58.938 43.478 9.23 0.00 32.89 6.53
5746 6374 4.082665 ACATCATCCCTATGCTGTCTTG 57.917 45.455 0.00 0.00 37.83 3.02
5795 6423 8.983702 AACCAAGTTTACCATTACTTTCACTA 57.016 30.769 0.00 0.00 32.50 2.74
5814 6443 4.946157 AGGACTGATGCATCTAAAACCAAG 59.054 41.667 26.32 15.13 0.00 3.61
5883 6812 2.423446 TAAATGAGCCCCGTAAACCC 57.577 50.000 0.00 0.00 0.00 4.11
5945 6885 9.394477 GTTGATTAAGTTTACACATGTTTCTCC 57.606 33.333 0.00 0.00 0.00 3.71
6018 6958 1.311859 CACTGCAACAAAGGAGCTCA 58.688 50.000 17.19 0.00 0.00 4.26
6075 7017 5.048921 GCTTCACATATACTTGATGCAGCAT 60.049 40.000 7.91 7.91 40.73 3.79
6168 7632 4.212847 AGCTATAGCATCAAATTCAGCACG 59.787 41.667 26.07 0.00 45.16 5.34
6172 7636 6.872628 TGGAAGCTATAGCATCAAATTCAG 57.127 37.500 26.34 0.00 45.16 3.02
6181 7645 7.093322 CAAAAGAACTTGGAAGCTATAGCAT 57.907 36.000 26.07 15.25 45.16 3.79
6364 7869 9.089601 CAAGTTGCAATGCTATTTGATGATTTA 57.910 29.630 16.81 0.00 34.38 1.40
6490 8008 1.789523 TTATGGGACGAAGGGAGGAG 58.210 55.000 0.00 0.00 0.00 3.69
6494 8012 6.225318 CGTTTTATATTATGGGACGAAGGGA 58.775 40.000 0.00 0.00 0.00 4.20
6499 8017 6.092955 AGAGCGTTTTATATTATGGGACGA 57.907 37.500 0.00 0.00 0.00 4.20
6518 8036 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6580 8098 8.836413 CGTTATCAGTCACATACCCAAAAATAT 58.164 33.333 0.00 0.00 0.00 1.28
6587 8111 4.274978 TCTCGTTATCAGTCACATACCCA 58.725 43.478 0.00 0.00 0.00 4.51
6590 8114 5.527951 TCCTCTCTCGTTATCAGTCACATAC 59.472 44.000 0.00 0.00 0.00 2.39
6613 8137 6.149973 TGTGATGAAACCTTCAATCATGACTC 59.850 38.462 0.00 0.00 43.95 3.36
6738 8267 1.009335 CACCGACTCGACACGTTGA 60.009 57.895 0.00 0.00 0.00 3.18
6848 8403 1.304282 GTGCACACATCCCCCATCT 59.696 57.895 13.17 0.00 0.00 2.90
6856 8417 3.434319 CCCGGCTGTGCACACATC 61.434 66.667 17.42 7.93 41.01 3.06
6865 8426 2.683933 CCTGTACCTCCCGGCTGT 60.684 66.667 0.00 0.00 0.00 4.40
6904 8465 6.379386 GTTCATCCTTTTTCTTTAACCTCCG 58.621 40.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.