Multiple sequence alignment - TraesCS2D01G571700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G571700 chr2D 100.000 4224 0 0 1 4224 637900481 637904704 0.000000e+00 7801.0
1 TraesCS2D01G571700 chr2D 100.000 640 0 0 4526 5165 637905006 637905645 0.000000e+00 1182.0
2 TraesCS2D01G571700 chr2D 80.257 856 163 5 1916 2771 640024486 640025335 1.570000e-179 640.0
3 TraesCS2D01G571700 chr2D 84.530 181 10 8 4835 5012 637892323 637892158 4.140000e-36 163.0
4 TraesCS2D01G571700 chr2D 90.110 91 9 0 4091 4181 637892685 637892595 9.090000e-23 119.0
5 TraesCS2D01G571700 chr2D 80.925 173 14 8 4843 5012 637969797 637969953 9.090000e-23 119.0
6 TraesCS2D01G571700 chr2D 80.556 144 10 6 4617 4750 637892500 637892365 1.530000e-15 95.3
7 TraesCS2D01G571700 chr2B 94.926 3646 140 19 538 4169 796601129 796597515 0.000000e+00 5666.0
8 TraesCS2D01G571700 chr2B 79.964 1123 207 12 2938 4054 795979532 795978422 0.000000e+00 811.0
9 TraesCS2D01G571700 chr2B 88.124 581 34 14 4537 5093 796597462 796596893 0.000000e+00 658.0
10 TraesCS2D01G571700 chr2B 82.635 501 75 6 1910 2401 789260350 789260847 2.860000e-117 433.0
11 TraesCS2D01G571700 chr2B 79.916 478 68 15 2332 2799 795757304 795756845 4.990000e-85 326.0
12 TraesCS2D01G571700 chr2B 84.740 308 39 6 1 305 796601653 796601351 8.410000e-78 302.0
13 TraesCS2D01G571700 chr2B 77.732 485 104 4 2414 2896 796024840 796025322 1.410000e-75 294.0
14 TraesCS2D01G571700 chr2B 84.752 282 22 12 4887 5165 796583331 796583068 3.970000e-66 263.0
15 TraesCS2D01G571700 chr2B 87.273 110 11 2 1642 1751 23291865 23291759 7.020000e-24 122.0
16 TraesCS2D01G571700 chr2B 88.298 94 8 2 449 539 796601254 796601161 5.470000e-20 110.0
17 TraesCS2D01G571700 chr2A 95.714 3523 129 17 711 4224 761304292 761307801 0.000000e+00 5650.0
18 TraesCS2D01G571700 chr2A 84.222 919 145 0 1901 2819 761856926 761856008 0.000000e+00 894.0
19 TraesCS2D01G571700 chr2A 83.213 971 154 2 2834 3795 761521330 761522300 0.000000e+00 881.0
20 TraesCS2D01G571700 chr2A 82.890 865 130 7 1917 2781 761898617 761897771 0.000000e+00 761.0
21 TraesCS2D01G571700 chr2A 78.061 1176 232 15 2938 4100 761897552 761896390 0.000000e+00 719.0
22 TraesCS2D01G571700 chr2A 84.075 697 101 4 3100 3786 761622501 761621805 0.000000e+00 664.0
23 TraesCS2D01G571700 chr2A 85.202 446 64 2 2330 2773 761520869 761521314 1.700000e-124 457.0
24 TraesCS2D01G571700 chr2A 79.195 596 80 20 2675 3248 761674528 761673955 1.760000e-99 374.0
25 TraesCS2D01G571700 chr2A 82.335 334 24 20 4833 5165 761308172 761308471 1.850000e-64 257.0
26 TraesCS2D01G571700 chr2A 79.456 331 51 13 978 1297 764189351 764189675 8.710000e-53 219.0
27 TraesCS2D01G571700 chr2A 84.848 99 5 3 4570 4668 761315584 761315672 1.980000e-14 91.6
28 TraesCS2D01G571700 chr1A 86.008 2287 296 16 1901 4175 7811142 7813416 0.000000e+00 2429.0
29 TraesCS2D01G571700 chr1D 86.085 2271 289 14 1916 4174 6542212 6539957 0.000000e+00 2418.0
30 TraesCS2D01G571700 chrUn 86.994 1038 114 5 1901 2938 22435518 22436534 0.000000e+00 1149.0
31 TraesCS2D01G571700 chrUn 84.076 898 122 13 2940 3831 22436750 22437632 0.000000e+00 846.0
32 TraesCS2D01G571700 chrUn 81.219 607 78 16 2656 3248 22521337 22521921 1.700000e-124 457.0
33 TraesCS2D01G571700 chrUn 75.943 424 53 23 4614 5012 266576134 266576533 6.880000e-39 172.0
34 TraesCS2D01G571700 chr5A 79.583 1102 198 21 3016 4096 641215546 641214451 0.000000e+00 763.0
35 TraesCS2D01G571700 chr1B 85.520 663 88 7 3516 4174 8754227 8754885 0.000000e+00 686.0
36 TraesCS2D01G571700 chr7B 79.101 957 174 24 3194 4137 540249602 540250545 2.030000e-178 636.0
37 TraesCS2D01G571700 chr6D 82.308 520 68 12 1533 2050 456099048 456098551 3.700000e-116 429.0
38 TraesCS2D01G571700 chr6A 73.451 1017 193 66 3018 3985 603405273 603406261 1.400000e-80 311.0
39 TraesCS2D01G571700 chr6B 83.688 141 17 6 3020 3157 694973275 694973412 1.510000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G571700 chr2D 637900481 637905645 5164 False 4491.5 7801 100.0000 1 5165 2 chr2D.!!$F3 5164
1 TraesCS2D01G571700 chr2D 640024486 640025335 849 False 640.0 640 80.2570 1916 2771 1 chr2D.!!$F2 855
2 TraesCS2D01G571700 chr2B 796596893 796601653 4760 True 1684.0 5666 89.0220 1 5093 4 chr2B.!!$R5 5092
3 TraesCS2D01G571700 chr2B 795978422 795979532 1110 True 811.0 811 79.9640 2938 4054 1 chr2B.!!$R3 1116
4 TraesCS2D01G571700 chr2A 761304292 761308471 4179 False 2953.5 5650 89.0245 711 5165 2 chr2A.!!$F3 4454
5 TraesCS2D01G571700 chr2A 761856008 761856926 918 True 894.0 894 84.2220 1901 2819 1 chr2A.!!$R3 918
6 TraesCS2D01G571700 chr2A 761896390 761898617 2227 True 740.0 761 80.4755 1917 4100 2 chr2A.!!$R4 2183
7 TraesCS2D01G571700 chr2A 761520869 761522300 1431 False 669.0 881 84.2075 2330 3795 2 chr2A.!!$F4 1465
8 TraesCS2D01G571700 chr2A 761621805 761622501 696 True 664.0 664 84.0750 3100 3786 1 chr2A.!!$R1 686
9 TraesCS2D01G571700 chr2A 761673955 761674528 573 True 374.0 374 79.1950 2675 3248 1 chr2A.!!$R2 573
10 TraesCS2D01G571700 chr1A 7811142 7813416 2274 False 2429.0 2429 86.0080 1901 4175 1 chr1A.!!$F1 2274
11 TraesCS2D01G571700 chr1D 6539957 6542212 2255 True 2418.0 2418 86.0850 1916 4174 1 chr1D.!!$R1 2258
12 TraesCS2D01G571700 chrUn 22435518 22437632 2114 False 997.5 1149 85.5350 1901 3831 2 chrUn.!!$F3 1930
13 TraesCS2D01G571700 chrUn 22521337 22521921 584 False 457.0 457 81.2190 2656 3248 1 chrUn.!!$F1 592
14 TraesCS2D01G571700 chr5A 641214451 641215546 1095 True 763.0 763 79.5830 3016 4096 1 chr5A.!!$R1 1080
15 TraesCS2D01G571700 chr1B 8754227 8754885 658 False 686.0 686 85.5200 3516 4174 1 chr1B.!!$F1 658
16 TraesCS2D01G571700 chr7B 540249602 540250545 943 False 636.0 636 79.1010 3194 4137 1 chr7B.!!$F1 943
17 TraesCS2D01G571700 chr6A 603405273 603406261 988 False 311.0 311 73.4510 3018 3985 1 chr6A.!!$F1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 201 0.035343 GGCTCCTTTAGGACACCCAC 60.035 60.0 0.0 0.0 39.78 4.61 F
948 1037 0.101040 CGAGCCAGAGCAGAGAAGAG 59.899 60.0 0.0 0.0 43.56 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 2020 0.393944 AGAGGTACGACATCGGCTCA 60.394 55.000 6.21 0.0 44.95 4.26 R
4175 4690 4.733165 AGAGAGAAGAGGAGAGATCCATG 58.267 47.826 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 7.923414 AGGAGTAATTCTAAACATCACCAAC 57.077 36.000 0.00 0.00 0.00 3.77
28 30 6.884836 AGGAGTAATTCTAAACATCACCAACC 59.115 38.462 0.00 0.00 0.00 3.77
29 31 6.657541 GGAGTAATTCTAAACATCACCAACCA 59.342 38.462 0.00 0.00 0.00 3.67
30 32 7.175990 GGAGTAATTCTAAACATCACCAACCAA 59.824 37.037 0.00 0.00 0.00 3.67
46 48 5.104374 CCAACCAAATCATGCACATACTTC 58.896 41.667 0.00 0.00 0.00 3.01
48 50 3.378112 ACCAAATCATGCACATACTTCCG 59.622 43.478 0.00 0.00 0.00 4.30
67 69 4.748892 TCCGAAGAAAGATCACAGTCATC 58.251 43.478 0.00 0.00 0.00 2.92
120 123 0.670546 AATGGCAAGACCGAGTGACG 60.671 55.000 0.00 0.00 43.94 4.35
123 126 2.375766 GCAAGACCGAGTGACGCAG 61.376 63.158 0.00 0.00 41.07 5.18
160 163 2.766313 TCTCAACTCACCAAACCATCG 58.234 47.619 0.00 0.00 0.00 3.84
196 200 1.550130 CGGCTCCTTTAGGACACCCA 61.550 60.000 0.00 0.00 39.78 4.51
197 201 0.035343 GGCTCCTTTAGGACACCCAC 60.035 60.000 0.00 0.00 39.78 4.61
199 203 1.339151 GCTCCTTTAGGACACCCACTG 60.339 57.143 0.00 0.00 39.78 3.66
202 206 2.781174 TCCTTTAGGACACCCACTGTTT 59.219 45.455 0.00 0.00 39.78 2.83
203 207 2.884639 CCTTTAGGACACCCACTGTTTG 59.115 50.000 0.00 0.00 37.39 2.93
208 212 1.317613 GACACCCACTGTTTGCATGA 58.682 50.000 0.00 0.00 31.03 3.07
212 216 3.061322 CACCCACTGTTTGCATGATTTG 58.939 45.455 0.00 0.00 0.00 2.32
216 220 4.815308 CCCACTGTTTGCATGATTTGAAAA 59.185 37.500 0.00 0.00 29.85 2.29
220 224 6.683708 CACTGTTTGCATGATTTGAAAAACAC 59.316 34.615 0.00 0.00 37.95 3.32
226 230 7.789273 TGCATGATTTGAAAAACACAAGAAT 57.211 28.000 0.00 0.00 0.00 2.40
287 291 7.428826 CAGCCTTAAGTTTTGTTTTGAGAGAT 58.571 34.615 0.97 0.00 0.00 2.75
289 293 7.503902 AGCCTTAAGTTTTGTTTTGAGAGATCT 59.496 33.333 0.00 0.00 0.00 2.75
291 295 8.012241 CCTTAAGTTTTGTTTTGAGAGATCTCG 58.988 37.037 16.97 0.00 45.72 4.04
293 297 4.084328 AGTTTTGTTTTGAGAGATCTCGCG 60.084 41.667 19.76 0.00 45.72 5.87
297 301 3.918591 TGTTTTGAGAGATCTCGCGTTAC 59.081 43.478 19.76 16.33 45.72 2.50
298 302 3.842732 TTTGAGAGATCTCGCGTTACA 57.157 42.857 19.76 10.56 45.72 2.41
305 309 5.892568 AGAGATCTCGCGTTACATAAAAGT 58.107 37.500 16.97 0.00 34.09 2.66
306 310 6.331061 AGAGATCTCGCGTTACATAAAAGTT 58.669 36.000 16.97 0.00 34.09 2.66
307 311 7.478322 AGAGATCTCGCGTTACATAAAAGTTA 58.522 34.615 16.97 0.00 34.09 2.24
308 312 8.136165 AGAGATCTCGCGTTACATAAAAGTTAT 58.864 33.333 16.97 0.00 34.09 1.89
309 313 9.390795 GAGATCTCGCGTTACATAAAAGTTATA 57.609 33.333 7.04 0.00 0.00 0.98
310 314 9.395707 AGATCTCGCGTTACATAAAAGTTATAG 57.604 33.333 5.77 0.00 0.00 1.31
311 315 9.390795 GATCTCGCGTTACATAAAAGTTATAGA 57.609 33.333 5.77 0.00 0.00 1.98
312 316 9.909644 ATCTCGCGTTACATAAAAGTTATAGAT 57.090 29.630 5.77 0.00 0.00 1.98
313 317 9.177304 TCTCGCGTTACATAAAAGTTATAGATG 57.823 33.333 5.77 0.00 0.00 2.90
314 318 8.861033 TCGCGTTACATAAAAGTTATAGATGT 57.139 30.769 5.77 0.00 35.09 3.06
315 319 9.304731 TCGCGTTACATAAAAGTTATAGATGTT 57.695 29.630 5.77 0.00 33.05 2.71
370 374 2.676471 GGGGTTTGCCGCAGTGAT 60.676 61.111 0.00 0.00 45.94 3.06
371 375 2.568090 GGGTTTGCCGCAGTGATG 59.432 61.111 0.00 0.00 34.97 3.07
372 376 2.568090 GGTTTGCCGCAGTGATGG 59.432 61.111 0.00 0.00 0.00 3.51
373 377 1.971167 GGTTTGCCGCAGTGATGGA 60.971 57.895 6.06 0.00 0.00 3.41
374 378 1.503542 GTTTGCCGCAGTGATGGAG 59.496 57.895 6.06 0.00 0.00 3.86
375 379 1.675310 TTTGCCGCAGTGATGGAGG 60.675 57.895 6.06 0.00 0.00 4.30
378 382 2.821366 CCGCAGTGATGGAGGCAC 60.821 66.667 0.00 0.00 36.53 5.01
379 383 3.190849 CGCAGTGATGGAGGCACG 61.191 66.667 0.00 0.00 41.04 5.34
380 384 2.265739 GCAGTGATGGAGGCACGA 59.734 61.111 0.00 0.00 41.04 4.35
381 385 1.375908 GCAGTGATGGAGGCACGAA 60.376 57.895 0.00 0.00 41.04 3.85
390 394 3.003763 AGGCACGAACTCCTCCCC 61.004 66.667 0.00 0.00 0.00 4.81
403 407 4.175962 ACTCCTCCCCATTTTTAGTGAGA 58.824 43.478 0.00 0.00 0.00 3.27
404 408 4.226168 ACTCCTCCCCATTTTTAGTGAGAG 59.774 45.833 0.00 0.00 0.00 3.20
405 409 4.175962 TCCTCCCCATTTTTAGTGAGAGT 58.824 43.478 0.00 0.00 0.00 3.24
407 411 4.702131 CCTCCCCATTTTTAGTGAGAGTTG 59.298 45.833 0.00 0.00 0.00 3.16
408 412 4.079253 TCCCCATTTTTAGTGAGAGTTGC 58.921 43.478 0.00 0.00 0.00 4.17
409 413 3.193479 CCCCATTTTTAGTGAGAGTTGCC 59.807 47.826 0.00 0.00 0.00 4.52
410 414 4.082125 CCCATTTTTAGTGAGAGTTGCCT 58.918 43.478 0.00 0.00 0.00 4.75
419 423 2.909140 AGAGTTGCCTCTCCTAGCC 58.091 57.895 2.31 0.00 45.08 3.93
421 425 0.978146 GAGTTGCCTCTCCTAGCCCA 60.978 60.000 0.00 0.00 34.69 5.36
424 428 1.981495 GTTGCCTCTCCTAGCCCATAT 59.019 52.381 0.00 0.00 0.00 1.78
426 430 0.908198 GCCTCTCCTAGCCCATATGG 59.092 60.000 15.41 15.41 37.09 2.74
455 489 9.804758 ATGAAAAATTATTATTTCGGGCGTTTA 57.195 25.926 0.00 0.00 38.16 2.01
468 502 3.130693 CGGGCGTTTAATTCCCCAAATTA 59.869 43.478 0.00 0.00 38.53 1.40
528 565 5.755849 AGATGTCCCAAGGTGGTAATTTAG 58.244 41.667 0.00 0.00 35.17 1.85
541 611 8.380099 AGGTGGTAATTTAGTGTCACAATCTAA 58.620 33.333 5.62 0.00 0.00 2.10
570 641 6.889722 TCCCTTTATTCTTGGTTATTGGTCAG 59.110 38.462 0.00 0.00 0.00 3.51
586 657 4.839121 TGGTCAGTAAAGTGAAGTGTGTT 58.161 39.130 0.00 0.00 0.00 3.32
628 704 5.100259 CAGCTATTGCAATGAAAAGAGTGG 58.900 41.667 22.27 3.30 42.74 4.00
629 705 3.861689 GCTATTGCAATGAAAAGAGTGGC 59.138 43.478 22.27 2.79 39.41 5.01
630 706 4.381292 GCTATTGCAATGAAAAGAGTGGCT 60.381 41.667 22.27 0.00 39.41 4.75
631 707 5.163622 GCTATTGCAATGAAAAGAGTGGCTA 60.164 40.000 22.27 0.00 39.41 3.93
632 708 4.503741 TTGCAATGAAAAGAGTGGCTAC 57.496 40.909 0.00 0.00 0.00 3.58
633 709 3.485394 TGCAATGAAAAGAGTGGCTACA 58.515 40.909 2.02 0.00 0.00 2.74
634 710 3.503363 TGCAATGAAAAGAGTGGCTACAG 59.497 43.478 2.02 0.00 0.00 2.74
635 711 3.753272 GCAATGAAAAGAGTGGCTACAGA 59.247 43.478 2.02 0.00 0.00 3.41
636 712 4.142730 GCAATGAAAAGAGTGGCTACAGAG 60.143 45.833 2.02 0.00 0.00 3.35
637 713 5.240891 CAATGAAAAGAGTGGCTACAGAGA 58.759 41.667 2.02 0.00 0.00 3.10
644 720 4.809193 AGAGTGGCTACAGAGATGGATAA 58.191 43.478 2.02 0.00 0.00 1.75
695 771 6.756542 AGAACACACTTCACTTTAAAAATGGC 59.243 34.615 0.00 0.00 0.00 4.40
737 825 2.517402 GGTGACGGCAACCAACCA 60.517 61.111 0.00 0.00 0.00 3.67
790 878 3.699134 GACCCGTGGGCCCATCTTC 62.699 68.421 31.45 18.19 39.32 2.87
791 879 3.411517 CCCGTGGGCCCATCTTCT 61.412 66.667 31.45 0.00 0.00 2.85
813 901 2.996734 CACCGCCCAGGCCAAAAT 60.997 61.111 5.01 0.00 46.52 1.82
944 1033 1.607756 AACCGAGCCAGAGCAGAGA 60.608 57.895 0.00 0.00 43.56 3.10
945 1034 1.188219 AACCGAGCCAGAGCAGAGAA 61.188 55.000 0.00 0.00 43.56 2.87
946 1035 1.141449 CCGAGCCAGAGCAGAGAAG 59.859 63.158 0.00 0.00 43.56 2.85
947 1036 1.318886 CCGAGCCAGAGCAGAGAAGA 61.319 60.000 0.00 0.00 43.56 2.87
948 1037 0.101040 CGAGCCAGAGCAGAGAAGAG 59.899 60.000 0.00 0.00 43.56 2.85
1002 1093 1.162181 CGGCCATCCTACAGCACATG 61.162 60.000 2.24 0.00 0.00 3.21
1028 1119 2.064581 ATACCTCACAGCCCCCGAC 61.065 63.158 0.00 0.00 0.00 4.79
1194 1285 2.375766 GCAGTGGAACGAGACGCTG 61.376 63.158 11.96 11.96 45.86 5.18
1548 1642 4.351054 CAGCCTTCCCAGCCCGTT 62.351 66.667 0.00 0.00 0.00 4.44
1635 1729 0.975040 CAGCTGCCTCTACCTCAGGT 60.975 60.000 0.00 0.00 38.88 4.00
1638 1732 1.965754 CTGCCTCTACCTCAGGTGGC 61.966 65.000 15.57 15.57 41.57 5.01
1926 2020 0.245539 CGTCCACCTACGACATGGTT 59.754 55.000 0.00 0.00 45.68 3.67
2310 2404 1.664017 CCTCGGCGAGATCATGCTG 60.664 63.158 36.47 14.39 38.85 4.41
2976 3432 3.706373 ATCGGCGTGCTGGAGGTT 61.706 61.111 6.85 0.00 0.00 3.50
3399 3901 0.988063 TGCACTACAGCAACCCCATA 59.012 50.000 0.00 0.00 42.46 2.74
4175 4690 1.531423 CTCCTATGACCATGCCATGC 58.469 55.000 0.00 0.00 0.00 4.06
4191 4706 3.773418 CATGCATGGATCTCTCCTCTT 57.227 47.619 19.40 0.00 42.59 2.85
4192 4707 3.666274 CATGCATGGATCTCTCCTCTTC 58.334 50.000 19.40 0.00 42.59 2.87
4591 5117 8.620116 TTGTTTGTGTGATCAGAGAATCATAA 57.380 30.769 12.43 1.69 37.93 1.90
4698 5238 3.511595 CGGCAGATGCGGCATTGT 61.512 61.111 17.78 4.91 43.26 2.71
4700 5240 1.713937 CGGCAGATGCGGCATTGTTA 61.714 55.000 17.78 0.00 43.26 2.41
4713 5253 5.692814 CGGCATTGTTATCATCCAACATAG 58.307 41.667 0.00 0.00 35.89 2.23
4714 5254 5.469760 CGGCATTGTTATCATCCAACATAGA 59.530 40.000 0.00 0.00 35.89 1.98
4715 5255 6.347969 CGGCATTGTTATCATCCAACATAGAG 60.348 42.308 0.00 0.00 35.89 2.43
4716 5256 6.488006 GGCATTGTTATCATCCAACATAGAGT 59.512 38.462 0.00 0.00 35.89 3.24
4717 5257 7.013655 GGCATTGTTATCATCCAACATAGAGTT 59.986 37.037 0.00 0.00 42.42 3.01
4718 5258 8.408601 GCATTGTTATCATCCAACATAGAGTTT 58.591 33.333 0.00 0.00 38.74 2.66
4762 5307 1.530323 ACCATACTTTTGTCGGTGCC 58.470 50.000 0.00 0.00 37.08 5.01
4766 5311 1.500512 TACTTTTGTCGGTGCCGTGC 61.501 55.000 10.60 5.87 40.74 5.34
4792 5338 8.274939 CGCATATTTTGTTGATTCACTTTTGTT 58.725 29.630 0.00 0.00 0.00 2.83
4799 5345 6.329496 TGTTGATTCACTTTTGTTTGTCTCC 58.671 36.000 0.00 0.00 0.00 3.71
4807 5353 2.799126 TTGTTTGTCTCCACACCAGT 57.201 45.000 0.00 0.00 29.76 4.00
4812 5358 2.543777 TGTCTCCACACCAGTTTAGC 57.456 50.000 0.00 0.00 0.00 3.09
4818 5364 1.148310 CACACCAGTTTAGCCAGTCG 58.852 55.000 0.00 0.00 0.00 4.18
4868 5453 3.792401 TCTTTGGATATGTGTAGCGTGG 58.208 45.455 0.00 0.00 0.00 4.94
4911 5497 7.335924 ACCAAGCTAACGAGAATAAATAAAGCA 59.664 33.333 0.00 0.00 0.00 3.91
4913 5499 9.722056 CAAGCTAACGAGAATAAATAAAGCATT 57.278 29.630 0.00 0.00 0.00 3.56
4914 5500 9.937175 AAGCTAACGAGAATAAATAAAGCATTC 57.063 29.630 0.00 0.00 0.00 2.67
4915 5501 9.109393 AGCTAACGAGAATAAATAAAGCATTCA 57.891 29.630 0.00 0.00 32.27 2.57
4946 5535 2.650813 ATTCCATCTCCGGCGACTGC 62.651 60.000 9.30 0.00 41.71 4.40
4953 5542 2.664851 CCGGCGACTGCTGTTTGA 60.665 61.111 9.30 0.00 46.53 2.69
4958 5547 0.588252 GCGACTGCTGTTTGACACAT 59.412 50.000 0.00 0.00 38.39 3.21
4959 5548 1.798223 GCGACTGCTGTTTGACACATA 59.202 47.619 0.00 0.00 38.39 2.29
4961 5550 3.059884 CGACTGCTGTTTGACACATAGT 58.940 45.455 0.00 0.00 36.12 2.12
4962 5551 4.234574 CGACTGCTGTTTGACACATAGTA 58.765 43.478 0.00 0.00 34.49 1.82
5024 5613 9.745018 TCTTATTCAGAAAGAATCATCAAAGGT 57.255 29.630 0.00 0.00 43.42 3.50
5027 5616 7.822161 TTCAGAAAGAATCATCAAAGGTGAA 57.178 32.000 0.00 0.00 37.30 3.18
5028 5617 7.444629 TCAGAAAGAATCATCAAAGGTGAAG 57.555 36.000 0.00 0.00 37.30 3.02
5029 5618 7.000472 TCAGAAAGAATCATCAAAGGTGAAGT 59.000 34.615 0.00 0.00 37.30 3.01
5039 5628 9.770097 ATCATCAAAGGTGAAGTGTATATACTG 57.230 33.333 13.89 0.55 37.30 2.74
5093 5685 5.220548 CCTTGTTCGAATTAGCATGTCTCTG 60.221 44.000 0.00 0.00 0.00 3.35
5103 5695 1.767681 GCATGTCTCTGGAAGGATCCT 59.232 52.381 9.02 9.02 46.70 3.24
5110 5702 3.469006 TCTCTGGAAGGATCCTACTCCAT 59.531 47.826 28.16 8.27 46.70 3.41
5111 5703 4.670247 TCTCTGGAAGGATCCTACTCCATA 59.330 45.833 28.16 21.88 46.70 2.74
5114 5706 4.742012 TGGAAGGATCCTACTCCATAGAC 58.258 47.826 25.53 5.02 46.70 2.59
5115 5707 4.170053 TGGAAGGATCCTACTCCATAGACA 59.830 45.833 25.53 7.31 46.70 3.41
5116 5708 4.770010 GGAAGGATCCTACTCCATAGACAG 59.230 50.000 22.84 0.00 42.93 3.51
5119 5711 4.044065 AGGATCCTACTCCATAGACAGAGG 59.956 50.000 14.27 0.00 37.81 3.69
5120 5712 3.231207 TCCTACTCCATAGACAGAGGC 57.769 52.381 0.00 0.00 34.27 4.70
5121 5713 2.514160 TCCTACTCCATAGACAGAGGCA 59.486 50.000 0.00 0.00 34.27 4.75
5122 5714 2.890311 CCTACTCCATAGACAGAGGCAG 59.110 54.545 0.00 0.00 34.27 4.85
5123 5715 1.118838 ACTCCATAGACAGAGGCAGC 58.881 55.000 0.00 0.00 34.27 5.25
5124 5716 1.342874 ACTCCATAGACAGAGGCAGCT 60.343 52.381 0.00 0.00 34.27 4.24
5125 5717 1.068895 CTCCATAGACAGAGGCAGCTG 59.931 57.143 10.11 10.11 41.63 4.24
5126 5718 1.117994 CCATAGACAGAGGCAGCTGA 58.882 55.000 20.43 0.00 39.20 4.26
5127 5719 1.693062 CCATAGACAGAGGCAGCTGAT 59.307 52.381 20.43 4.39 39.20 2.90
5128 5720 2.104451 CCATAGACAGAGGCAGCTGATT 59.896 50.000 20.43 3.56 39.20 2.57
5129 5721 3.323115 CCATAGACAGAGGCAGCTGATTA 59.677 47.826 20.43 6.33 39.20 1.75
5133 5725 3.710677 AGACAGAGGCAGCTGATTAGATT 59.289 43.478 20.43 0.00 39.20 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 3.627123 TCGGAAGTATGTGCATGATTTGG 59.373 43.478 0.00 0.00 0.00 3.28
28 30 4.880886 TCGGAAGTATGTGCATGATTTG 57.119 40.909 0.00 0.00 0.00 2.32
29 31 5.185454 TCTTCGGAAGTATGTGCATGATTT 58.815 37.500 16.78 0.00 0.00 2.17
30 32 4.769688 TCTTCGGAAGTATGTGCATGATT 58.230 39.130 16.78 0.00 0.00 2.57
46 48 3.549471 CGATGACTGTGATCTTTCTTCGG 59.451 47.826 5.73 0.00 34.02 4.30
48 50 3.928992 TGCGATGACTGTGATCTTTCTTC 59.071 43.478 5.73 0.00 0.00 2.87
67 69 0.302890 GATTGCAGATTCTCGGTGCG 59.697 55.000 0.00 0.00 40.23 5.34
94 96 1.089920 CGGTCTTGCCATTCCTGAAG 58.910 55.000 0.00 0.00 36.97 3.02
123 126 6.924111 AGTTGAGAAGAGAAGAGATGACTTC 58.076 40.000 0.00 0.00 44.36 3.01
160 163 4.378563 GGAGCCGCTTTCTTCTTTAGAAAC 60.379 45.833 0.00 0.00 45.60 2.78
176 180 1.449778 GGTGTCCTAAAGGAGCCGC 60.450 63.158 0.00 0.00 46.49 6.53
178 182 0.035343 GTGGGTGTCCTAAAGGAGCC 60.035 60.000 0.00 5.10 46.49 4.70
196 200 6.370994 TGTGTTTTTCAAATCATGCAAACAGT 59.629 30.769 0.00 0.00 40.05 3.55
197 201 6.773080 TGTGTTTTTCAAATCATGCAAACAG 58.227 32.000 0.00 0.00 40.05 3.16
199 203 7.462731 TCTTGTGTTTTTCAAATCATGCAAAC 58.537 30.769 0.00 0.00 34.74 2.93
202 206 7.789273 ATTCTTGTGTTTTTCAAATCATGCA 57.211 28.000 0.00 0.00 0.00 3.96
259 263 6.323739 TCTCAAAACAAAACTTAAGGCTGGAT 59.676 34.615 7.53 0.00 0.00 3.41
265 269 8.012241 CGAGATCTCTCAAAACAAAACTTAAGG 58.988 37.037 20.26 0.00 43.00 2.69
270 274 4.084328 CGCGAGATCTCTCAAAACAAAACT 60.084 41.667 20.26 0.00 43.00 2.66
276 280 3.918591 TGTAACGCGAGATCTCTCAAAAC 59.081 43.478 20.26 12.76 43.00 2.43
278 282 3.842732 TGTAACGCGAGATCTCTCAAA 57.157 42.857 20.26 0.00 43.00 2.69
287 291 9.177304 CATCTATAACTTTTATGTAACGCGAGA 57.823 33.333 15.93 0.00 0.00 4.04
289 293 8.861033 ACATCTATAACTTTTATGTAACGCGA 57.139 30.769 15.93 0.00 0.00 5.87
305 309 5.413833 GGTCGTCTCCGGATAACATCTATAA 59.586 44.000 3.57 0.00 33.95 0.98
306 310 4.940046 GGTCGTCTCCGGATAACATCTATA 59.060 45.833 3.57 0.00 33.95 1.31
307 311 3.757493 GGTCGTCTCCGGATAACATCTAT 59.243 47.826 3.57 0.00 33.95 1.98
308 312 3.144506 GGTCGTCTCCGGATAACATCTA 58.855 50.000 3.57 0.00 33.95 1.98
309 313 1.955080 GGTCGTCTCCGGATAACATCT 59.045 52.381 3.57 0.00 33.95 2.90
310 314 1.334779 CGGTCGTCTCCGGATAACATC 60.335 57.143 3.57 2.61 45.88 3.06
311 315 0.666913 CGGTCGTCTCCGGATAACAT 59.333 55.000 3.57 0.00 45.88 2.71
312 316 2.100846 CGGTCGTCTCCGGATAACA 58.899 57.895 3.57 0.00 45.88 2.41
320 324 2.829458 CCTCCTCCGGTCGTCTCC 60.829 72.222 0.00 0.00 0.00 3.71
321 325 2.829458 CCCTCCTCCGGTCGTCTC 60.829 72.222 0.00 0.00 0.00 3.36
322 326 3.336568 TCCCTCCTCCGGTCGTCT 61.337 66.667 0.00 0.00 0.00 4.18
323 327 2.829458 CTCCCTCCTCCGGTCGTC 60.829 72.222 0.00 0.00 0.00 4.20
350 354 4.974721 ACTGCGGCAAACCCCTGG 62.975 66.667 3.44 0.00 0.00 4.45
351 355 3.673484 CACTGCGGCAAACCCCTG 61.673 66.667 3.44 0.00 0.00 4.45
352 356 3.210012 ATCACTGCGGCAAACCCCT 62.210 57.895 3.44 0.00 0.00 4.79
353 357 2.676471 ATCACTGCGGCAAACCCC 60.676 61.111 3.44 0.00 0.00 4.95
354 358 2.568090 CATCACTGCGGCAAACCC 59.432 61.111 3.44 0.00 0.00 4.11
355 359 1.926511 CTCCATCACTGCGGCAAACC 61.927 60.000 3.44 0.00 0.00 3.27
356 360 1.503542 CTCCATCACTGCGGCAAAC 59.496 57.895 3.44 0.00 0.00 2.93
357 361 1.675310 CCTCCATCACTGCGGCAAA 60.675 57.895 3.44 0.00 0.00 3.68
358 362 2.046023 CCTCCATCACTGCGGCAA 60.046 61.111 3.44 0.00 0.00 4.52
359 363 4.783621 GCCTCCATCACTGCGGCA 62.784 66.667 1.29 1.29 37.38 5.69
360 364 4.783621 TGCCTCCATCACTGCGGC 62.784 66.667 0.00 0.00 37.72 6.53
361 365 2.821366 GTGCCTCCATCACTGCGG 60.821 66.667 0.00 0.00 0.00 5.69
362 366 3.190849 CGTGCCTCCATCACTGCG 61.191 66.667 0.00 0.00 32.54 5.18
363 367 1.375908 TTCGTGCCTCCATCACTGC 60.376 57.895 0.00 0.00 32.54 4.40
364 368 0.036952 AGTTCGTGCCTCCATCACTG 60.037 55.000 0.00 0.00 32.54 3.66
365 369 0.247736 GAGTTCGTGCCTCCATCACT 59.752 55.000 0.00 0.00 32.54 3.41
366 370 0.741221 GGAGTTCGTGCCTCCATCAC 60.741 60.000 11.25 0.00 46.46 3.06
367 371 1.596934 GGAGTTCGTGCCTCCATCA 59.403 57.895 11.25 0.00 46.46 3.07
368 372 4.522971 GGAGTTCGTGCCTCCATC 57.477 61.111 11.25 0.00 46.46 3.51
373 377 3.003763 GGGGAGGAGTTCGTGCCT 61.004 66.667 11.32 0.00 41.20 4.75
374 378 2.198304 AATGGGGAGGAGTTCGTGCC 62.198 60.000 4.05 4.05 40.80 5.01
375 379 0.322546 AAATGGGGAGGAGTTCGTGC 60.323 55.000 0.00 0.00 0.00 5.34
376 380 2.200373 AAAATGGGGAGGAGTTCGTG 57.800 50.000 0.00 0.00 0.00 4.35
377 381 2.971901 AAAAATGGGGAGGAGTTCGT 57.028 45.000 0.00 0.00 0.00 3.85
378 382 3.689649 CACTAAAAATGGGGAGGAGTTCG 59.310 47.826 0.00 0.00 0.00 3.95
379 383 4.918588 TCACTAAAAATGGGGAGGAGTTC 58.081 43.478 0.00 0.00 0.00 3.01
380 384 4.601857 TCTCACTAAAAATGGGGAGGAGTT 59.398 41.667 0.00 0.00 0.00 3.01
381 385 4.175962 TCTCACTAAAAATGGGGAGGAGT 58.824 43.478 0.00 0.00 0.00 3.85
385 389 4.156739 GCAACTCTCACTAAAAATGGGGAG 59.843 45.833 0.00 0.00 0.00 4.30
424 428 7.011857 GCCCGAAATAATAATTTTTCATTGCCA 59.988 33.333 2.27 0.00 35.41 4.92
426 430 7.062848 CGCCCGAAATAATAATTTTTCATTGC 58.937 34.615 2.27 0.81 35.41 3.56
427 431 8.125728 ACGCCCGAAATAATAATTTTTCATTG 57.874 30.769 0.00 0.00 35.41 2.82
429 433 8.710835 AAACGCCCGAAATAATAATTTTTCAT 57.289 26.923 0.00 0.00 35.41 2.57
434 438 9.251792 GGAATTAAACGCCCGAAATAATAATTT 57.748 29.630 0.00 0.00 38.03 1.82
435 439 7.868922 GGGAATTAAACGCCCGAAATAATAATT 59.131 33.333 0.00 0.00 31.06 1.40
437 441 6.238981 GGGGAATTAAACGCCCGAAATAATAA 60.239 38.462 7.54 0.00 42.99 1.40
438 442 5.241285 GGGGAATTAAACGCCCGAAATAATA 59.759 40.000 7.54 0.00 42.99 0.98
439 443 4.038282 GGGGAATTAAACGCCCGAAATAAT 59.962 41.667 7.54 0.00 42.99 1.28
443 447 1.175654 GGGGAATTAAACGCCCGAAA 58.824 50.000 7.54 0.00 42.99 3.46
444 448 0.037877 TGGGGAATTAAACGCCCGAA 59.962 50.000 13.56 0.72 42.99 4.30
446 450 0.889306 TTTGGGGAATTAAACGCCCG 59.111 50.000 13.56 0.00 42.99 6.13
447 451 3.620427 AATTTGGGGAATTAAACGCCC 57.380 42.857 13.56 8.71 41.28 6.13
479 516 8.912988 TCTAGCCCATTCCAAAAGTTAAATATG 58.087 33.333 0.00 0.00 0.00 1.78
481 518 8.333235 TCTCTAGCCCATTCCAAAAGTTAAATA 58.667 33.333 0.00 0.00 0.00 1.40
482 519 7.182060 TCTCTAGCCCATTCCAAAAGTTAAAT 58.818 34.615 0.00 0.00 0.00 1.40
488 525 4.530875 ACATCTCTAGCCCATTCCAAAAG 58.469 43.478 0.00 0.00 0.00 2.27
495 532 2.196742 TGGGACATCTCTAGCCCATT 57.803 50.000 0.00 0.00 45.31 3.16
541 611 9.951866 ACCAATAACCAAGAATAAAGGGATAAT 57.048 29.630 0.00 0.00 0.00 1.28
553 623 7.284074 TCACTTTACTGACCAATAACCAAGAA 58.716 34.615 0.00 0.00 0.00 2.52
557 627 6.485313 CACTTCACTTTACTGACCAATAACCA 59.515 38.462 0.00 0.00 0.00 3.67
565 635 4.272748 GGAACACACTTCACTTTACTGACC 59.727 45.833 0.00 0.00 0.00 4.02
570 641 3.816994 AGGGGAACACACTTCACTTTAC 58.183 45.455 0.00 0.00 0.00 2.01
625 701 6.116126 ACTTTTTATCCATCTCTGTAGCCAC 58.884 40.000 0.00 0.00 0.00 5.01
626 702 6.313519 ACTTTTTATCCATCTCTGTAGCCA 57.686 37.500 0.00 0.00 0.00 4.75
627 703 8.204836 TCTAACTTTTTATCCATCTCTGTAGCC 58.795 37.037 0.00 0.00 0.00 3.93
628 704 9.036671 GTCTAACTTTTTATCCATCTCTGTAGC 57.963 37.037 0.00 0.00 0.00 3.58
629 705 9.239002 CGTCTAACTTTTTATCCATCTCTGTAG 57.761 37.037 0.00 0.00 0.00 2.74
630 706 8.746530 ACGTCTAACTTTTTATCCATCTCTGTA 58.253 33.333 0.00 0.00 0.00 2.74
631 707 7.612677 ACGTCTAACTTTTTATCCATCTCTGT 58.387 34.615 0.00 0.00 0.00 3.41
632 708 8.480643 AACGTCTAACTTTTTATCCATCTCTG 57.519 34.615 0.00 0.00 0.00 3.35
633 709 8.532819 AGAACGTCTAACTTTTTATCCATCTCT 58.467 33.333 0.00 0.00 0.00 3.10
634 710 8.705048 AGAACGTCTAACTTTTTATCCATCTC 57.295 34.615 0.00 0.00 0.00 2.75
635 711 9.152595 GAAGAACGTCTAACTTTTTATCCATCT 57.847 33.333 0.00 0.00 0.00 2.90
636 712 9.152595 AGAAGAACGTCTAACTTTTTATCCATC 57.847 33.333 0.00 0.00 0.00 3.51
637 713 9.503399 AAGAAGAACGTCTAACTTTTTATCCAT 57.497 29.630 0.00 0.00 0.00 3.41
644 720 7.605410 TGTTGAAGAAGAACGTCTAACTTTT 57.395 32.000 0.00 0.00 0.00 2.27
674 750 6.272318 TCAGCCATTTTTAAAGTGAAGTGTG 58.728 36.000 1.70 0.00 0.00 3.82
695 771 8.110612 CCATATCTTTTTATACGCGCTATTCAG 58.889 37.037 5.73 0.00 0.00 3.02
715 791 1.400494 GTTGGTTGCCGTCACCATATC 59.600 52.381 0.00 0.00 33.06 1.63
737 825 3.893572 CGTCGGCGGGGTTTATTT 58.106 55.556 7.21 0.00 0.00 1.40
755 843 1.337821 GTCAGACCAATGTCGACGAC 58.662 55.000 20.97 20.97 46.51 4.34
790 878 2.426023 GCCTGGGCGGTGGTATAG 59.574 66.667 0.00 0.00 34.25 1.31
791 879 3.165685 GGCCTGGGCGGTGGTATA 61.166 66.667 3.84 0.00 43.06 1.47
813 901 9.155785 TGAGGGGTTGGTTGTTATTTTATTTTA 57.844 29.630 0.00 0.00 0.00 1.52
944 1033 1.302285 CCATGGGTGCTCTGCTCTT 59.698 57.895 2.85 0.00 0.00 2.85
945 1034 2.996395 CCATGGGTGCTCTGCTCT 59.004 61.111 2.85 0.00 0.00 4.09
946 1035 2.827642 GCCATGGGTGCTCTGCTC 60.828 66.667 15.13 0.00 0.00 4.26
947 1036 4.437587 GGCCATGGGTGCTCTGCT 62.438 66.667 15.13 0.00 0.00 4.24
1002 1093 2.565841 GGCTGTGAGGTATGGATGTTC 58.434 52.381 0.00 0.00 0.00 3.18
1547 1641 1.832167 GGGTCCAAGTTGCCAGCAA 60.832 57.895 0.00 0.00 0.00 3.91
1548 1642 2.203480 GGGTCCAAGTTGCCAGCA 60.203 61.111 0.00 0.00 0.00 4.41
1553 1647 1.376037 CTCTCGGGGTCCAAGTTGC 60.376 63.158 0.00 0.00 0.00 4.17
1926 2020 0.393944 AGAGGTACGACATCGGCTCA 60.394 55.000 6.21 0.00 44.95 4.26
4175 4690 4.733165 AGAGAGAAGAGGAGAGATCCATG 58.267 47.826 0.00 0.00 0.00 3.66
4178 4693 6.544928 AAAAAGAGAGAAGAGGAGAGATCC 57.455 41.667 0.00 0.00 0.00 3.36
4743 5283 1.530323 GGCACCGACAAAAGTATGGT 58.470 50.000 0.00 0.00 0.00 3.55
4762 5307 3.850837 TGAATCAACAAAATATGCGCACG 59.149 39.130 14.90 0.00 0.00 5.34
4766 5311 7.786114 ACAAAAGTGAATCAACAAAATATGCG 58.214 30.769 0.00 0.00 0.00 4.73
4792 5338 2.486548 GGCTAAACTGGTGTGGAGACAA 60.487 50.000 0.00 0.00 46.06 3.18
4799 5345 1.148310 CGACTGGCTAAACTGGTGTG 58.852 55.000 0.00 0.00 0.00 3.82
4807 5353 0.546122 ATCCATGGCGACTGGCTAAA 59.454 50.000 6.96 0.00 42.94 1.85
4812 5358 1.524621 GGACATCCATGGCGACTGG 60.525 63.158 6.96 0.65 36.40 4.00
4857 5442 2.303600 ACTTTATTCCCCACGCTACACA 59.696 45.455 0.00 0.00 0.00 3.72
4868 5453 3.062122 TGGTCGACCAACTTTATTCCC 57.938 47.619 34.60 3.66 44.35 3.97
4911 5497 9.950496 GGAGATGGAATACAATAGTACATGAAT 57.050 33.333 0.00 0.00 31.96 2.57
4913 5499 7.309805 CCGGAGATGGAATACAATAGTACATGA 60.310 40.741 0.00 0.00 31.96 3.07
4914 5500 6.813649 CCGGAGATGGAATACAATAGTACATG 59.186 42.308 0.00 0.00 31.96 3.21
4915 5501 6.574465 GCCGGAGATGGAATACAATAGTACAT 60.574 42.308 5.05 0.00 31.96 2.29
4919 5505 3.306088 CGCCGGAGATGGAATACAATAGT 60.306 47.826 5.05 0.00 0.00 2.12
5014 5603 8.204160 CCAGTATATACACTTCACCTTTGATGA 58.796 37.037 15.18 0.00 32.42 2.92
5021 5610 6.134055 TGCTACCAGTATATACACTTCACCT 58.866 40.000 15.18 0.00 0.00 4.00
5023 5612 8.361139 AGAATGCTACCAGTATATACACTTCAC 58.639 37.037 15.18 1.57 0.00 3.18
5024 5613 8.478775 AGAATGCTACCAGTATATACACTTCA 57.521 34.615 15.18 5.57 0.00 3.02
5038 5627 4.301072 AGCCACTTTTAGAATGCTACCA 57.699 40.909 0.00 0.00 0.00 3.25
5039 5628 4.459337 ACAAGCCACTTTTAGAATGCTACC 59.541 41.667 0.00 0.00 0.00 3.18
5056 5648 2.678336 CGAACAAGGATTAGGACAAGCC 59.322 50.000 0.00 0.00 0.00 4.35
5093 5685 4.742012 TGTCTATGGAGTAGGATCCTTCC 58.258 47.826 22.03 21.71 42.96 3.46
5103 5695 2.091610 AGCTGCCTCTGTCTATGGAGTA 60.092 50.000 0.00 0.00 0.00 2.59
5110 5702 3.903467 TCTAATCAGCTGCCTCTGTCTA 58.097 45.455 9.47 0.00 35.63 2.59
5111 5703 2.744760 TCTAATCAGCTGCCTCTGTCT 58.255 47.619 9.47 0.00 35.63 3.41
5114 5706 5.465532 TCTAATCTAATCAGCTGCCTCTG 57.534 43.478 9.47 0.00 35.46 3.35
5115 5707 6.684897 AATCTAATCTAATCAGCTGCCTCT 57.315 37.500 9.47 0.00 0.00 3.69
5116 5708 7.835822 TCTAATCTAATCTAATCAGCTGCCTC 58.164 38.462 9.47 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.