Multiple sequence alignment - TraesCS2D01G571300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G571300 chr2D 100.000 7722 0 0 1 7722 637659388 637651667 0.000000e+00 14260
1 TraesCS2D01G571300 chr2D 95.181 83 4 0 7493 7575 598020679 598020597 1.750000e-26 132
2 TraesCS2D01G571300 chr2D 93.976 83 5 0 7493 7575 598048870 598048788 8.140000e-25 126
3 TraesCS2D01G571300 chr2A 92.748 7005 345 72 805 7722 762284782 762291710 0.000000e+00 9971
4 TraesCS2D01G571300 chr2A 94.611 167 9 0 2134 2300 739297639 739297805 7.690000e-65 259
5 TraesCS2D01G571300 chr2A 85.185 135 6 9 1 129 762284216 762284342 8.140000e-25 126
6 TraesCS2D01G571300 chr2B 91.179 7040 404 87 812 7722 795071509 795064558 0.000000e+00 9359
7 TraesCS2D01G571300 chr2B 86.121 281 17 14 1 269 795072212 795071942 4.560000e-72 283
8 TraesCS2D01G571300 chr7A 78.391 1032 187 29 5584 6606 472572748 472571744 8.450000e-179 638
9 TraesCS2D01G571300 chr7A 95.210 167 8 0 2134 2300 643671894 643672060 1.650000e-66 265
10 TraesCS2D01G571300 chr7A 94.012 167 10 0 2134 2300 701614706 701614872 3.580000e-63 254
11 TraesCS2D01G571300 chr7B 78.025 1033 190 30 5584 6606 426114938 426113933 3.960000e-172 616
12 TraesCS2D01G571300 chr7B 94.611 167 9 0 2134 2300 60951 60785 7.690000e-65 259
13 TraesCS2D01G571300 chr7D 77.778 1035 190 32 5584 6606 411610597 411609591 1.110000e-167 601
14 TraesCS2D01G571300 chr6A 94.012 167 10 0 2134 2300 606527625 606527459 3.580000e-63 254
15 TraesCS2D01G571300 chr3A 94.012 167 10 0 2134 2300 29047828 29047994 3.580000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G571300 chr2D 637651667 637659388 7721 True 14260.0 14260 100.0000 1 7722 1 chr2D.!!$R3 7721
1 TraesCS2D01G571300 chr2A 762284216 762291710 7494 False 5048.5 9971 88.9665 1 7722 2 chr2A.!!$F2 7721
2 TraesCS2D01G571300 chr2B 795064558 795072212 7654 True 4821.0 9359 88.6500 1 7722 2 chr2B.!!$R1 7721
3 TraesCS2D01G571300 chr7A 472571744 472572748 1004 True 638.0 638 78.3910 5584 6606 1 chr7A.!!$R1 1022
4 TraesCS2D01G571300 chr7B 426113933 426114938 1005 True 616.0 616 78.0250 5584 6606 1 chr7B.!!$R2 1022
5 TraesCS2D01G571300 chr7D 411609591 411610597 1006 True 601.0 601 77.7780 5584 6606 1 chr7D.!!$R1 1022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 106 0.035630 GGGTGATTGTCAGCTCAGCT 60.036 55.0 0.00 0.0 43.82 4.24 F
175 190 0.036388 TCTCTTGTGGATTGGACGGC 60.036 55.0 0.00 0.0 0.00 5.68 F
777 863 0.038599 TGCATCCATCACCACTGCTT 59.961 50.0 0.00 0.0 34.02 3.91 F
787 873 0.106918 ACCACTGCTTTCGTTTCCCA 60.107 50.0 0.00 0.0 0.00 4.37 F
1947 2087 0.108138 GGGACTCCGATGTTGGTCTG 60.108 60.0 0.00 0.0 0.00 3.51 F
3155 3347 0.618458 TACTGGCTGGTCATCCAACC 59.382 55.0 0.30 0.3 46.92 3.77 F
3305 3500 0.178767 TGTCTAGCCAATGCATCGCT 59.821 50.0 21.10 21.1 41.13 4.93 F
3897 4112 0.248825 CTGAGGCACGGAATCTCTCG 60.249 60.0 0.00 0.0 0.00 4.04 F
4700 4930 0.257039 GGGTGTCTAGGTCCTCGGTA 59.743 60.0 0.00 0.0 0.00 4.02 F
5712 5960 0.308993 GCTTGCATATGTCGCTTCCC 59.691 55.0 4.29 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1652 0.176680 CTGCAGATGCTAGGAACCGT 59.823 55.000 8.42 0.00 42.66 4.83 R
2100 2241 0.673985 GGTCCTTTTCCTGGCAACAC 59.326 55.000 0.00 0.00 46.17 3.32 R
2321 2462 0.937304 GCACTGTTTCAGCTTCGTCA 59.063 50.000 0.00 0.00 34.37 4.35 R
2334 2475 1.037493 TGTGGAAGTAGTCGCACTGT 58.963 50.000 0.00 0.00 31.99 3.55 R
3233 3425 1.542472 TCGTCAGCCTCGTCAATGTAA 59.458 47.619 0.00 0.00 0.00 2.41 R
3957 4172 0.104120 TGTTCACCGAGTGTCCACAG 59.896 55.000 0.00 0.00 34.79 3.66 R
4315 4545 0.179056 GGTATGGACGGTGACCATGG 60.179 60.000 11.19 11.19 46.05 3.66 R
4851 5081 1.621317 TCCAGTTGCTGTTCGGTCATA 59.379 47.619 0.00 0.00 0.00 2.15 R
5863 6111 2.179517 CGGTGTCGAGAGAGTGGC 59.820 66.667 0.00 0.00 43.49 5.01 R
7150 7437 0.821517 TCGTGCGATTAGGATGGTGT 59.178 50.000 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 2.359354 CGCCGGGTGGTCAAATCA 60.359 61.111 2.18 0.00 37.67 2.57
27 29 1.382522 CCGGGTGGTCAAATCATCAG 58.617 55.000 0.00 0.00 0.00 2.90
97 105 0.321919 TGGGTGATTGTCAGCTCAGC 60.322 55.000 8.78 0.00 43.82 4.26
98 106 0.035630 GGGTGATTGTCAGCTCAGCT 60.036 55.000 0.00 0.00 43.82 4.24
129 143 2.610694 GGAGACACCGACGACACGA 61.611 63.158 0.00 0.00 35.09 4.35
130 144 1.154450 GAGACACCGACGACACGAG 60.154 63.158 0.00 0.00 35.09 4.18
134 148 0.601046 ACACCGACGACACGAGTAGA 60.601 55.000 0.00 0.00 35.09 2.59
152 166 4.787280 AGCTACCGGCCAGGCTCT 62.787 66.667 12.43 5.57 46.52 4.09
153 167 4.228567 GCTACCGGCCAGGCTCTC 62.229 72.222 12.43 0.00 46.52 3.20
154 168 3.905678 CTACCGGCCAGGCTCTCG 61.906 72.222 12.43 6.49 46.52 4.04
159 173 4.219999 GGCCAGGCTCTCGCTCTC 62.220 72.222 12.43 0.00 36.09 3.20
160 174 3.146913 GCCAGGCTCTCGCTCTCT 61.147 66.667 3.29 0.00 36.09 3.10
162 176 1.141449 CCAGGCTCTCGCTCTCTTG 59.859 63.158 0.00 0.00 36.09 3.02
175 190 0.036388 TCTCTTGTGGATTGGACGGC 60.036 55.000 0.00 0.00 0.00 5.68
178 193 0.804989 CTTGTGGATTGGACGGCTTC 59.195 55.000 0.00 0.00 0.00 3.86
201 216 0.170784 GTCGTCGTCTTCTTCTCCCC 59.829 60.000 0.00 0.00 0.00 4.81
202 217 0.964358 TCGTCGTCTTCTTCTCCCCC 60.964 60.000 0.00 0.00 0.00 5.40
203 218 0.966370 CGTCGTCTTCTTCTCCCCCT 60.966 60.000 0.00 0.00 0.00 4.79
205 220 1.066787 GTCGTCTTCTTCTCCCCCTTG 60.067 57.143 0.00 0.00 0.00 3.61
270 299 2.355986 CCGGTTCCATCTCCGTCCA 61.356 63.158 0.00 0.00 44.51 4.02
271 300 1.153628 CGGTTCCATCTCCGTCCAC 60.154 63.158 0.00 0.00 41.58 4.02
272 301 1.221021 GGTTCCATCTCCGTCCACC 59.779 63.158 0.00 0.00 0.00 4.61
273 302 1.550130 GGTTCCATCTCCGTCCACCA 61.550 60.000 0.00 0.00 0.00 4.17
274 303 0.391263 GTTCCATCTCCGTCCACCAC 60.391 60.000 0.00 0.00 0.00 4.16
275 304 1.550130 TTCCATCTCCGTCCACCACC 61.550 60.000 0.00 0.00 0.00 4.61
276 305 2.184322 CATCTCCGTCCACCACCG 59.816 66.667 0.00 0.00 0.00 4.94
277 306 3.771160 ATCTCCGTCCACCACCGC 61.771 66.667 0.00 0.00 0.00 5.68
286 315 4.393155 CACCACCGCCTGCTGCTA 62.393 66.667 0.00 0.00 38.05 3.49
287 316 4.394712 ACCACCGCCTGCTGCTAC 62.395 66.667 0.00 0.00 38.05 3.58
288 317 4.087892 CCACCGCCTGCTGCTACT 62.088 66.667 0.00 0.00 38.05 2.57
289 318 2.510238 CACCGCCTGCTGCTACTC 60.510 66.667 0.00 0.00 38.05 2.59
290 319 3.775654 ACCGCCTGCTGCTACTCC 61.776 66.667 0.00 0.00 38.05 3.85
291 320 3.774528 CCGCCTGCTGCTACTCCA 61.775 66.667 0.00 0.00 38.05 3.86
344 383 2.042259 TTGCTGAATCGGCTGCTGG 61.042 57.895 15.72 0.00 36.58 4.85
347 386 1.986575 GCTGAATCGGCTGCTGGTTC 61.987 60.000 24.16 24.16 31.08 3.62
348 387 1.372087 CTGAATCGGCTGCTGGTTCC 61.372 60.000 26.87 12.78 29.44 3.62
349 388 1.377202 GAATCGGCTGCTGGTTCCA 60.377 57.895 21.20 0.00 0.00 3.53
350 389 0.749454 GAATCGGCTGCTGGTTCCAT 60.749 55.000 21.20 0.00 0.00 3.41
351 390 0.749454 AATCGGCTGCTGGTTCCATC 60.749 55.000 8.89 0.00 0.00 3.51
352 391 1.630126 ATCGGCTGCTGGTTCCATCT 61.630 55.000 8.89 0.00 0.00 2.90
353 392 1.817099 CGGCTGCTGGTTCCATCTC 60.817 63.158 0.00 0.00 0.00 2.75
355 394 1.817099 GCTGCTGGTTCCATCTCGG 60.817 63.158 0.00 0.00 0.00 4.63
360 399 0.108138 CTGGTTCCATCTCGGTCCAC 60.108 60.000 0.00 0.00 35.85 4.02
362 401 1.550130 GGTTCCATCTCGGTCCACCA 61.550 60.000 0.00 0.00 33.19 4.17
365 404 1.990060 CCATCTCGGTCCACCACCT 60.990 63.158 0.00 0.00 44.21 4.00
369 408 3.596066 CTCGGTCCACCACCTGCTG 62.596 68.421 0.00 0.00 44.21 4.41
371 410 3.958860 GGTCCACCACCTGCTGCT 61.959 66.667 0.00 0.00 42.84 4.24
372 411 2.113986 GTCCACCACCTGCTGCTT 59.886 61.111 0.00 0.00 0.00 3.91
373 412 2.113774 TCCACCACCTGCTGCTTG 59.886 61.111 0.00 0.00 0.00 4.01
375 414 2.596631 CACCACCTGCTGCTTGCT 60.597 61.111 0.00 0.00 43.37 3.91
377 416 2.033757 CCACCTGCTGCTTGCTCT 59.966 61.111 0.00 0.00 43.37 4.09
378 417 1.602888 CCACCTGCTGCTTGCTCTT 60.603 57.895 0.00 0.00 43.37 2.85
380 419 0.605860 CACCTGCTGCTTGCTCTTCT 60.606 55.000 0.00 0.00 43.37 2.85
381 420 0.321475 ACCTGCTGCTTGCTCTTCTC 60.321 55.000 0.00 0.00 43.37 2.87
385 424 1.694955 GCTGCTTGCTCTTCTCTCGC 61.695 60.000 0.00 0.00 38.95 5.03
391 430 4.560856 CTCTTCTCTCGCCGGCGG 62.561 72.222 44.95 34.43 40.25 6.13
421 469 5.275067 TGTTTCTTCCCCTTGTGATTTTG 57.725 39.130 0.00 0.00 0.00 2.44
430 478 1.812571 CTTGTGATTTTGGGTCCTCCG 59.187 52.381 0.00 0.00 38.76 4.63
441 489 3.379445 TCCTCCGAGGCGACCAAC 61.379 66.667 9.87 0.00 34.61 3.77
442 490 4.452733 CCTCCGAGGCGACCAACC 62.453 72.222 0.18 0.00 0.00 3.77
443 491 3.691342 CTCCGAGGCGACCAACCA 61.691 66.667 0.00 0.00 0.00 3.67
444 492 3.000819 TCCGAGGCGACCAACCAT 61.001 61.111 0.00 0.00 0.00 3.55
445 493 2.819595 CCGAGGCGACCAACCATG 60.820 66.667 0.00 0.00 0.00 3.66
446 494 2.264480 CGAGGCGACCAACCATGA 59.736 61.111 0.00 0.00 0.00 3.07
447 495 2.100631 CGAGGCGACCAACCATGAC 61.101 63.158 0.00 0.00 0.00 3.06
448 496 2.047274 AGGCGACCAACCATGACG 60.047 61.111 0.00 0.00 0.00 4.35
449 497 3.799755 GGCGACCAACCATGACGC 61.800 66.667 0.00 0.00 44.68 5.19
450 498 3.799755 GCGACCAACCATGACGCC 61.800 66.667 0.00 0.00 42.04 5.68
451 499 2.047274 CGACCAACCATGACGCCT 60.047 61.111 0.00 0.00 0.00 5.52
452 500 1.671054 CGACCAACCATGACGCCTT 60.671 57.895 0.00 0.00 0.00 4.35
453 501 1.635663 CGACCAACCATGACGCCTTC 61.636 60.000 0.00 0.00 0.00 3.46
454 502 0.321653 GACCAACCATGACGCCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
455 503 0.110486 ACCAACCATGACGCCTTCTT 59.890 50.000 0.00 0.00 0.00 2.52
456 504 0.804989 CCAACCATGACGCCTTCTTC 59.195 55.000 0.00 0.00 0.00 2.87
457 505 0.804989 CAACCATGACGCCTTCTTCC 59.195 55.000 0.00 0.00 0.00 3.46
458 506 0.693049 AACCATGACGCCTTCTTCCT 59.307 50.000 0.00 0.00 0.00 3.36
459 507 1.568504 ACCATGACGCCTTCTTCCTA 58.431 50.000 0.00 0.00 0.00 2.94
460 508 1.207329 ACCATGACGCCTTCTTCCTAC 59.793 52.381 0.00 0.00 0.00 3.18
461 509 1.482593 CCATGACGCCTTCTTCCTACT 59.517 52.381 0.00 0.00 0.00 2.57
462 510 2.693591 CCATGACGCCTTCTTCCTACTA 59.306 50.000 0.00 0.00 0.00 1.82
463 511 3.132289 CCATGACGCCTTCTTCCTACTAA 59.868 47.826 0.00 0.00 0.00 2.24
464 512 3.863142 TGACGCCTTCTTCCTACTAAC 57.137 47.619 0.00 0.00 0.00 2.34
465 513 3.428532 TGACGCCTTCTTCCTACTAACT 58.571 45.455 0.00 0.00 0.00 2.24
471 519 6.660949 ACGCCTTCTTCCTACTAACTAACTAA 59.339 38.462 0.00 0.00 0.00 2.24
473 521 6.971756 GCCTTCTTCCTACTAACTAACTAACG 59.028 42.308 0.00 0.00 0.00 3.18
501 549 3.466395 AGGCTGAGTAAGTTCCTCTCT 57.534 47.619 0.00 0.00 0.00 3.10
502 550 3.361786 AGGCTGAGTAAGTTCCTCTCTC 58.638 50.000 0.00 0.00 0.00 3.20
503 551 3.011257 AGGCTGAGTAAGTTCCTCTCTCT 59.989 47.826 0.00 0.00 0.00 3.10
506 554 3.761218 CTGAGTAAGTTCCTCTCTCTGCA 59.239 47.826 0.00 0.00 0.00 4.41
507 555 3.761218 TGAGTAAGTTCCTCTCTCTGCAG 59.239 47.826 7.63 7.63 0.00 4.41
508 556 2.495669 AGTAAGTTCCTCTCTCTGCAGC 59.504 50.000 9.47 0.00 0.00 5.25
509 557 1.346062 AAGTTCCTCTCTCTGCAGCA 58.654 50.000 9.47 0.00 0.00 4.41
510 558 0.607620 AGTTCCTCTCTCTGCAGCAC 59.392 55.000 9.47 0.00 0.00 4.40
512 560 0.833409 TTCCTCTCTCTGCAGCACCA 60.833 55.000 9.47 0.00 0.00 4.17
513 561 1.079266 CCTCTCTCTGCAGCACCAC 60.079 63.158 9.47 0.00 0.00 4.16
514 562 1.670015 CTCTCTCTGCAGCACCACA 59.330 57.895 9.47 0.00 0.00 4.17
516 564 1.117749 TCTCTCTGCAGCACCACACT 61.118 55.000 9.47 0.00 0.00 3.55
517 565 0.250209 CTCTCTGCAGCACCACACTT 60.250 55.000 9.47 0.00 0.00 3.16
518 566 0.250038 TCTCTGCAGCACCACACTTC 60.250 55.000 9.47 0.00 0.00 3.01
519 567 1.227943 TCTGCAGCACCACACTTCC 60.228 57.895 9.47 0.00 0.00 3.46
520 568 1.526686 CTGCAGCACCACACTTCCA 60.527 57.895 0.00 0.00 0.00 3.53
521 569 0.892358 CTGCAGCACCACACTTCCAT 60.892 55.000 0.00 0.00 0.00 3.41
589 657 2.696707 GAGTACATGGACGGATGGGTTA 59.303 50.000 1.41 0.00 0.00 2.85
595 663 5.130350 ACATGGACGGATGGGTTAATTAAG 58.870 41.667 0.00 0.00 0.00 1.85
602 670 5.163457 ACGGATGGGTTAATTAAGCAATTGG 60.163 40.000 24.50 17.27 35.88 3.16
621 700 4.265904 TGGTTGAATTTGTCGCTCTAGA 57.734 40.909 0.00 0.00 0.00 2.43
637 716 4.981674 GCTCTAGAACGGAAGAATGATGAG 59.018 45.833 0.00 0.00 0.00 2.90
640 719 6.743110 TCTAGAACGGAAGAATGATGAGATG 58.257 40.000 0.00 0.00 0.00 2.90
641 720 5.350504 AGAACGGAAGAATGATGAGATGT 57.649 39.130 0.00 0.00 0.00 3.06
660 746 7.950124 TGAGATGTTTTCCTCCCTCTTAATTTT 59.050 33.333 0.00 0.00 0.00 1.82
661 747 8.127150 AGATGTTTTCCTCCCTCTTAATTTTG 57.873 34.615 0.00 0.00 0.00 2.44
662 748 6.664428 TGTTTTCCTCCCTCTTAATTTTGG 57.336 37.500 0.00 0.00 0.00 3.28
663 749 5.542251 TGTTTTCCTCCCTCTTAATTTTGGG 59.458 40.000 0.00 0.00 40.95 4.12
664 750 3.382083 TCCTCCCTCTTAATTTTGGGC 57.618 47.619 0.00 0.00 39.49 5.36
665 751 2.926329 TCCTCCCTCTTAATTTTGGGCT 59.074 45.455 0.00 0.00 39.49 5.19
666 752 3.336694 TCCTCCCTCTTAATTTTGGGCTT 59.663 43.478 0.00 0.00 39.49 4.35
667 753 3.701542 CCTCCCTCTTAATTTTGGGCTTC 59.298 47.826 0.00 0.00 39.49 3.86
668 754 3.701542 CTCCCTCTTAATTTTGGGCTTCC 59.298 47.826 0.00 0.00 39.49 3.46
669 755 3.336694 TCCCTCTTAATTTTGGGCTTCCT 59.663 43.478 0.00 0.00 39.49 3.36
670 756 3.448660 CCCTCTTAATTTTGGGCTTCCTG 59.551 47.826 0.00 0.00 32.49 3.86
671 757 4.344104 CCTCTTAATTTTGGGCTTCCTGA 58.656 43.478 0.00 0.00 0.00 3.86
672 758 4.772100 CCTCTTAATTTTGGGCTTCCTGAA 59.228 41.667 0.00 0.00 0.00 3.02
673 759 5.423290 CCTCTTAATTTTGGGCTTCCTGAAT 59.577 40.000 0.00 0.00 0.00 2.57
674 760 6.284891 TCTTAATTTTGGGCTTCCTGAATG 57.715 37.500 0.00 0.00 0.00 2.67
675 761 5.779771 TCTTAATTTTGGGCTTCCTGAATGT 59.220 36.000 0.00 0.00 0.00 2.71
693 779 9.706691 CCTGAATGTACTCTGAAACTTTTACTA 57.293 33.333 0.00 0.00 0.00 1.82
730 816 5.939883 ACGAACATTCCTCAAATTCAGATGA 59.060 36.000 0.00 0.00 0.00 2.92
732 818 7.770433 ACGAACATTCCTCAAATTCAGATGATA 59.230 33.333 0.00 0.00 0.00 2.15
733 819 8.281194 CGAACATTCCTCAAATTCAGATGATAG 58.719 37.037 0.00 0.00 0.00 2.08
746 832 9.607333 AATTCAGATGATAGTAGTAATCCCTCA 57.393 33.333 0.00 0.00 0.00 3.86
750 836 7.453126 CAGATGATAGTAGTAATCCCTCAACCT 59.547 40.741 0.00 0.00 0.00 3.50
764 850 2.681848 CTCAACCTCATCAACTGCATCC 59.318 50.000 0.00 0.00 0.00 3.51
777 863 0.038599 TGCATCCATCACCACTGCTT 59.961 50.000 0.00 0.00 34.02 3.91
778 864 1.180029 GCATCCATCACCACTGCTTT 58.820 50.000 0.00 0.00 0.00 3.51
779 865 1.133790 GCATCCATCACCACTGCTTTC 59.866 52.381 0.00 0.00 0.00 2.62
780 866 1.399440 CATCCATCACCACTGCTTTCG 59.601 52.381 0.00 0.00 0.00 3.46
781 867 0.396435 TCCATCACCACTGCTTTCGT 59.604 50.000 0.00 0.00 0.00 3.85
782 868 1.202758 TCCATCACCACTGCTTTCGTT 60.203 47.619 0.00 0.00 0.00 3.85
783 869 1.608590 CCATCACCACTGCTTTCGTTT 59.391 47.619 0.00 0.00 0.00 3.60
784 870 2.350772 CCATCACCACTGCTTTCGTTTC 60.351 50.000 0.00 0.00 0.00 2.78
785 871 1.305201 TCACCACTGCTTTCGTTTCC 58.695 50.000 0.00 0.00 0.00 3.13
786 872 0.310854 CACCACTGCTTTCGTTTCCC 59.689 55.000 0.00 0.00 0.00 3.97
787 873 0.106918 ACCACTGCTTTCGTTTCCCA 60.107 50.000 0.00 0.00 0.00 4.37
788 874 1.028905 CCACTGCTTTCGTTTCCCAA 58.971 50.000 0.00 0.00 0.00 4.12
789 875 1.613437 CCACTGCTTTCGTTTCCCAAT 59.387 47.619 0.00 0.00 0.00 3.16
790 876 2.035832 CCACTGCTTTCGTTTCCCAATT 59.964 45.455 0.00 0.00 0.00 2.32
791 877 3.254657 CCACTGCTTTCGTTTCCCAATTA 59.745 43.478 0.00 0.00 0.00 1.40
792 878 4.082245 CCACTGCTTTCGTTTCCCAATTAT 60.082 41.667 0.00 0.00 0.00 1.28
793 879 5.469479 CACTGCTTTCGTTTCCCAATTATT 58.531 37.500 0.00 0.00 0.00 1.40
794 880 5.572896 CACTGCTTTCGTTTCCCAATTATTC 59.427 40.000 0.00 0.00 0.00 1.75
795 881 4.728534 TGCTTTCGTTTCCCAATTATTCG 58.271 39.130 0.00 0.00 0.00 3.34
796 882 3.546271 GCTTTCGTTTCCCAATTATTCGC 59.454 43.478 0.00 0.00 0.00 4.70
797 883 4.674362 GCTTTCGTTTCCCAATTATTCGCT 60.674 41.667 0.00 0.00 0.00 4.93
798 884 4.349663 TTCGTTTCCCAATTATTCGCTG 57.650 40.909 0.00 0.00 0.00 5.18
799 885 2.096819 TCGTTTCCCAATTATTCGCTGC 59.903 45.455 0.00 0.00 0.00 5.25
800 886 2.159448 CGTTTCCCAATTATTCGCTGCA 60.159 45.455 0.00 0.00 0.00 4.41
801 887 3.179048 GTTTCCCAATTATTCGCTGCAC 58.821 45.455 0.00 0.00 0.00 4.57
802 888 2.121291 TCCCAATTATTCGCTGCACA 57.879 45.000 0.00 0.00 0.00 4.57
803 889 1.742831 TCCCAATTATTCGCTGCACAC 59.257 47.619 0.00 0.00 0.00 3.82
814 900 3.874873 TGCACACGCAGACATAGC 58.125 55.556 0.00 0.00 45.36 2.97
833 919 4.997905 AGCCGATTCATTCATTCGTATG 57.002 40.909 0.00 0.00 0.00 2.39
835 921 3.667960 GCCGATTCATTCATTCGTATGGC 60.668 47.826 1.95 0.00 32.40 4.40
841 927 6.844696 TTCATTCATTCGTATGGCTAACTC 57.155 37.500 1.95 0.00 32.40 3.01
842 928 6.161855 TCATTCATTCGTATGGCTAACTCT 57.838 37.500 1.95 0.00 32.40 3.24
843 929 6.216569 TCATTCATTCGTATGGCTAACTCTC 58.783 40.000 1.95 0.00 32.40 3.20
844 930 5.854010 TTCATTCGTATGGCTAACTCTCT 57.146 39.130 1.95 0.00 32.40 3.10
846 932 6.954487 TCATTCGTATGGCTAACTCTCTTA 57.046 37.500 1.95 0.00 32.40 2.10
847 933 7.342769 TCATTCGTATGGCTAACTCTCTTAA 57.657 36.000 1.95 0.00 32.40 1.85
850 936 9.862371 CATTCGTATGGCTAACTCTCTTAATAT 57.138 33.333 0.00 0.00 0.00 1.28
857 953 8.135382 TGGCTAACTCTCTTAATATATCCACC 57.865 38.462 0.00 0.00 0.00 4.61
907 1004 1.624479 ATCAGTCAGGCAGGCAGGAG 61.624 60.000 0.00 0.00 0.00 3.69
916 1013 0.179051 GCAGGCAGGAGATTCAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
920 1017 1.069978 GGCAGGAGATTCAGAGGTAGC 59.930 57.143 0.00 0.00 0.00 3.58
923 1020 2.102252 CAGGAGATTCAGAGGTAGCACC 59.898 54.545 0.00 0.00 38.99 5.01
927 1024 2.906389 AGATTCAGAGGTAGCACCACAA 59.094 45.455 7.86 0.00 41.95 3.33
952 1049 1.970639 TCAGCCTGCTGACTGACTC 59.029 57.895 17.46 0.00 46.80 3.36
960 1057 1.339291 TGCTGACTGACTCACTGACAG 59.661 52.381 0.00 0.00 42.58 3.51
962 1059 2.351641 GCTGACTGACTCACTGACAGAG 60.352 54.545 10.08 0.55 40.37 3.35
965 1062 4.911390 TGACTGACTCACTGACAGAGATA 58.089 43.478 10.08 0.00 40.07 1.98
966 1063 4.940654 TGACTGACTCACTGACAGAGATAG 59.059 45.833 10.08 8.15 40.07 2.08
968 1065 5.754782 ACTGACTCACTGACAGAGATAGAT 58.245 41.667 10.08 0.00 40.07 1.98
970 1067 7.517320 ACTGACTCACTGACAGAGATAGATAT 58.483 38.462 10.08 0.00 40.07 1.63
971 1068 8.655901 ACTGACTCACTGACAGAGATAGATATA 58.344 37.037 10.08 0.00 40.07 0.86
972 1069 9.671279 CTGACTCACTGACAGAGATAGATATAT 57.329 37.037 10.08 0.00 40.07 0.86
973 1070 9.447157 TGACTCACTGACAGAGATAGATATATG 57.553 37.037 10.08 0.00 36.91 1.78
974 1071 9.448438 GACTCACTGACAGAGATAGATATATGT 57.552 37.037 10.08 0.00 36.91 2.29
976 1073 8.049655 TCACTGACAGAGATAGATATATGTGC 57.950 38.462 10.08 0.00 0.00 4.57
1020 1126 5.149273 GCCATGAATAACAATACGCTCATG 58.851 41.667 0.00 0.00 39.77 3.07
1047 1159 1.094073 CCAGCACCAGCAGTATCAGC 61.094 60.000 0.00 0.00 45.49 4.26
1069 1181 4.825422 CAGGTATGTGTGTCTGTCATCTT 58.175 43.478 0.00 0.00 0.00 2.40
1135 1254 1.523758 ATGTTTGGTTCTGAGGCGAC 58.476 50.000 0.00 0.00 0.00 5.19
1302 1424 2.187946 GAGGAGGGTGATGCCGTG 59.812 66.667 0.00 0.00 38.44 4.94
1335 1457 3.124921 CCGGCCACCAACGATGAC 61.125 66.667 2.24 0.00 0.00 3.06
1410 1538 3.151554 TGAATGGCATGATGGTATCAGC 58.848 45.455 0.00 0.00 43.53 4.26
1479 1607 4.640690 AGGGAGGACCGGCACACT 62.641 66.667 0.00 0.00 46.96 3.55
1524 1652 2.703416 CAGCTAAAGATGCTCACCACA 58.297 47.619 0.00 0.00 38.92 4.17
1536 1664 1.116536 TCACCACACGGTTCCTAGCA 61.117 55.000 0.00 0.00 46.31 3.49
1722 1850 2.044758 ACCCGAAGACAGTGGTAACTT 58.955 47.619 0.00 0.00 32.98 2.66
1792 1924 2.689553 TCATCACTGCGGCAATAGAA 57.310 45.000 3.44 0.00 0.00 2.10
1795 1927 2.401583 TCACTGCGGCAATAGAATGT 57.598 45.000 3.44 0.00 0.00 2.71
1947 2087 0.108138 GGGACTCCGATGTTGGTCTG 60.108 60.000 0.00 0.00 0.00 3.51
1974 2114 8.351111 CATCATTTGATTCCATGGGACAGGTG 62.351 46.154 13.02 11.42 34.95 4.00
2027 2168 5.786401 ACTGAATTCGCATTTCTACTGTC 57.214 39.130 0.04 0.00 0.00 3.51
2060 2201 7.157347 TGTATGTCAGAGATGATTTATGCTCC 58.843 38.462 0.00 0.00 0.00 4.70
2214 2355 1.067821 CGGGACATACAGGAGCTTCTC 59.932 57.143 0.00 0.00 0.00 2.87
2307 2448 7.286546 TCTGGATCTCCTATAGTCTCTGTTTTG 59.713 40.741 0.00 0.00 36.82 2.44
2321 2462 4.665451 TCTGTTTTGGACATCATGACCAT 58.335 39.130 9.80 0.00 41.46 3.55
2334 2475 2.542020 TGACCATGACGAAGCTGAAA 57.458 45.000 0.00 0.00 0.00 2.69
2355 2496 2.263077 CAGTGCGACTACTTCCACATC 58.737 52.381 0.00 0.00 31.32 3.06
2463 2607 4.530857 GGATGCACGGTAGGCGCT 62.531 66.667 7.64 0.00 0.00 5.92
2477 2621 2.831333 AGGCGCTCTTTGTCTATCATG 58.169 47.619 7.64 0.00 0.00 3.07
2479 2623 2.286294 GGCGCTCTTTGTCTATCATGTG 59.714 50.000 7.64 0.00 0.00 3.21
2480 2624 2.932614 GCGCTCTTTGTCTATCATGTGT 59.067 45.455 0.00 0.00 0.00 3.72
2486 2648 8.982685 CGCTCTTTGTCTATCATGTGTATATTT 58.017 33.333 0.00 0.00 0.00 1.40
2642 2822 3.947868 TCTTGAGGCATCCTTCTTTGAG 58.052 45.455 0.00 0.00 31.76 3.02
2667 2856 6.545298 GGATCAGAAGGTATTCTTGAATGCTT 59.455 38.462 10.34 1.69 43.45 3.91
2737 2926 4.100035 TGCAGAGAATGGTGTCAGGTATAG 59.900 45.833 0.00 0.00 0.00 1.31
2738 2927 4.100189 GCAGAGAATGGTGTCAGGTATAGT 59.900 45.833 0.00 0.00 0.00 2.12
3026 3215 3.996921 ACACCTGAGCTCAATCAAGAT 57.003 42.857 18.85 0.00 0.00 2.40
3155 3347 0.618458 TACTGGCTGGTCATCCAACC 59.382 55.000 0.30 0.30 46.92 3.77
3196 3388 5.987777 TTGTCAGTTGCATTTGAAAATGG 57.012 34.783 15.60 1.51 44.54 3.16
3233 3425 4.412528 ACCCCTTACAGTGAAGAGAAAACT 59.587 41.667 0.00 0.00 0.00 2.66
3305 3500 0.178767 TGTCTAGCCAATGCATCGCT 59.821 50.000 21.10 21.10 41.13 4.93
3650 3865 6.182627 ACAACTGCTCATGATTCCTGAATAA 58.817 36.000 0.00 0.00 0.00 1.40
3652 3867 7.994911 ACAACTGCTCATGATTCCTGAATAATA 59.005 33.333 0.00 0.00 0.00 0.98
3819 4034 6.378280 GGAAAATTTGGATGTGGACTAGATGT 59.622 38.462 0.00 0.00 0.00 3.06
3820 4035 7.093771 GGAAAATTTGGATGTGGACTAGATGTT 60.094 37.037 0.00 0.00 0.00 2.71
3843 4058 1.372087 GATGTGAGCAGGAAAGCGGG 61.372 60.000 0.00 0.00 40.15 6.13
3897 4112 0.248825 CTGAGGCACGGAATCTCTCG 60.249 60.000 0.00 0.00 0.00 4.04
3942 4157 1.597742 TTTCAAGCCACTCTGCTGAC 58.402 50.000 0.00 0.00 41.80 3.51
3957 4172 2.167281 TGCTGACAGAAGGCTATCAGTC 59.833 50.000 6.65 13.67 45.39 3.51
4025 4241 2.663119 CGCAAGCACCTTTTAGCATTTC 59.337 45.455 0.00 0.00 0.00 2.17
4027 4243 3.676646 GCAAGCACCTTTTAGCATTTCAG 59.323 43.478 0.00 0.00 0.00 3.02
4030 4246 5.126396 AGCACCTTTTAGCATTTCAGTTC 57.874 39.130 0.00 0.00 0.00 3.01
4035 4251 7.041848 GCACCTTTTAGCATTTCAGTTCAAATT 60.042 33.333 0.00 0.00 0.00 1.82
4063 4279 9.729023 TTTGATAAGTTATTTCTTGTGTGTGTG 57.271 29.630 0.00 0.00 0.00 3.82
4065 4281 8.341903 TGATAAGTTATTTCTTGTGTGTGTGTG 58.658 33.333 0.00 0.00 0.00 3.82
4066 4282 6.509418 AAGTTATTTCTTGTGTGTGTGTGT 57.491 33.333 0.00 0.00 0.00 3.72
4067 4283 5.879237 AGTTATTTCTTGTGTGTGTGTGTG 58.121 37.500 0.00 0.00 0.00 3.82
4068 4284 5.414454 AGTTATTTCTTGTGTGTGTGTGTGT 59.586 36.000 0.00 0.00 0.00 3.72
4069 4285 6.596106 AGTTATTTCTTGTGTGTGTGTGTGTA 59.404 34.615 0.00 0.00 0.00 2.90
4070 4286 7.282224 AGTTATTTCTTGTGTGTGTGTGTGTAT 59.718 33.333 0.00 0.00 0.00 2.29
4071 4287 5.888691 TTTCTTGTGTGTGTGTGTGTATT 57.111 34.783 0.00 0.00 0.00 1.89
4072 4288 5.888691 TTCTTGTGTGTGTGTGTGTATTT 57.111 34.783 0.00 0.00 0.00 1.40
4073 4289 5.888691 TCTTGTGTGTGTGTGTGTATTTT 57.111 34.783 0.00 0.00 0.00 1.82
4074 4290 6.986904 TCTTGTGTGTGTGTGTGTATTTTA 57.013 33.333 0.00 0.00 0.00 1.52
4075 4291 7.561021 TCTTGTGTGTGTGTGTGTATTTTAT 57.439 32.000 0.00 0.00 0.00 1.40
4076 4292 7.990917 TCTTGTGTGTGTGTGTGTATTTTATT 58.009 30.769 0.00 0.00 0.00 1.40
4077 4293 7.912773 TCTTGTGTGTGTGTGTGTATTTTATTG 59.087 33.333 0.00 0.00 0.00 1.90
4078 4294 5.974158 TGTGTGTGTGTGTGTATTTTATTGC 59.026 36.000 0.00 0.00 0.00 3.56
4079 4295 5.974158 GTGTGTGTGTGTGTATTTTATTGCA 59.026 36.000 0.00 0.00 0.00 4.08
4080 4296 6.473778 GTGTGTGTGTGTGTATTTTATTGCAA 59.526 34.615 0.00 0.00 0.00 4.08
4100 4328 6.122850 GCAATTTTTCTCTTGCAAAAAGGT 57.877 33.333 0.00 0.00 45.50 3.50
4102 4330 7.125755 GCAATTTTTCTCTTGCAAAAAGGTAC 58.874 34.615 0.00 0.00 45.50 3.34
4103 4331 7.011389 GCAATTTTTCTCTTGCAAAAAGGTACT 59.989 33.333 0.00 0.00 45.50 2.73
4293 4522 6.884836 AGGGGAGAAATGTATGTACAGTTTTC 59.115 38.462 12.61 12.61 43.50 2.29
4294 4523 6.183360 GGGGAGAAATGTATGTACAGTTTTCG 60.183 42.308 13.86 0.00 43.50 3.46
4326 4556 7.767261 TCTTTTATTTTATTCCATGGTCACCG 58.233 34.615 12.58 0.00 0.00 4.94
4328 4558 6.687081 TTATTTTATTCCATGGTCACCGTC 57.313 37.500 12.58 0.00 0.00 4.79
4329 4559 2.702592 TTATTCCATGGTCACCGTCC 57.297 50.000 12.58 0.00 0.00 4.79
4350 4580 5.355350 GTCCATACCAACCTTCTGAATTCAG 59.645 44.000 26.56 26.56 45.08 3.02
4365 4595 5.181009 TGAATTCAGTCTAATGCCTCTGTG 58.819 41.667 3.38 0.00 0.00 3.66
4372 4602 2.637382 TCTAATGCCTCTGTGGTGTTCA 59.363 45.455 0.00 0.00 38.35 3.18
4399 4629 1.276622 TCTTGCCAGAGGAGTTACCC 58.723 55.000 0.00 0.00 40.05 3.69
4498 4728 7.255277 CCTTCCTTCCTGTTAAAGAGTTTTCTG 60.255 40.741 0.00 0.00 32.79 3.02
4518 4748 3.849911 TGAACTCGATGAGATGTTGGTC 58.150 45.455 0.00 0.00 33.32 4.02
4575 4805 7.438564 TGCCCCTTTTTCTGTTACTTTAATTC 58.561 34.615 0.00 0.00 0.00 2.17
4669 4899 3.022406 AGGATTTTCTCATGAAGGCTGC 58.978 45.455 0.00 0.00 33.28 5.25
4700 4930 0.257039 GGGTGTCTAGGTCCTCGGTA 59.743 60.000 0.00 0.00 0.00 4.02
4739 4969 4.429854 AAATTGGCTCTATCAGGACCTC 57.570 45.455 0.00 0.00 0.00 3.85
4788 5018 2.416547 CGGTTGCATGGACTTCTACTTG 59.583 50.000 0.00 0.00 0.00 3.16
4851 5081 8.429641 TGAAGAAGGTGACTATTGAACTTACTT 58.570 33.333 0.00 0.00 42.68 2.24
4862 5092 8.308931 ACTATTGAACTTACTTATGACCGAACA 58.691 33.333 0.00 0.00 0.00 3.18
5084 5323 1.452108 GGGGCAGAGAAATGGTCCG 60.452 63.158 0.00 0.00 0.00 4.79
5102 5341 4.143052 GGTCCGATTTTACAACGTTCGATT 60.143 41.667 0.00 0.00 31.74 3.34
5277 5525 1.064906 CATCTCATCTGCCACCCTTGT 60.065 52.381 0.00 0.00 0.00 3.16
5379 5627 5.268131 TGAGATATCCAGCATAGTCTCCT 57.732 43.478 0.00 0.00 33.04 3.69
5504 5752 3.244491 CCTCTTCATCATCCTGGTCATCC 60.244 52.174 0.00 0.00 0.00 3.51
5712 5960 0.308993 GCTTGCATATGTCGCTTCCC 59.691 55.000 4.29 0.00 0.00 3.97
5807 6055 4.759693 AGGTTCATCGTCAAGCAAATACAA 59.240 37.500 0.00 0.00 0.00 2.41
5863 6111 4.414852 CCGGATTACTTCAAGCATGTTTG 58.585 43.478 15.50 15.50 0.00 2.93
5990 6257 3.443037 TGTGCATGTGTTTTTACAGTGC 58.557 40.909 0.00 0.00 36.51 4.40
6025 6292 3.873910 TCAGGTTAAGCAGATAAGGCAC 58.126 45.455 7.52 0.00 0.00 5.01
6184 6451 4.651778 TGGATCAAAACTTTGTCGAGGAT 58.348 39.130 0.00 0.00 39.18 3.24
6193 6460 2.203800 TTGTCGAGGATATGCGTGTC 57.796 50.000 0.00 0.00 0.00 3.67
6376 6644 2.736721 TCGCTTGCAGTCAGTTAATGTC 59.263 45.455 0.00 0.00 0.00 3.06
6643 6911 6.215636 AGAGTTCAGGGACCTGTAAATATTGT 59.784 38.462 17.34 0.00 43.96 2.71
6700 6968 3.523806 GAAGCCTCAACTTCGAGCT 57.476 52.632 0.00 0.00 36.96 4.09
6762 7030 5.643421 ATGGAGTTCATCTTCCAGCTTAT 57.357 39.130 0.00 0.00 35.54 1.73
6797 7065 5.685520 TTGCAACCAGTGTACATAGGATA 57.314 39.130 19.74 4.09 0.00 2.59
6798 7066 5.685520 TGCAACCAGTGTACATAGGATAA 57.314 39.130 19.74 1.88 0.00 1.75
6802 7070 5.277857 ACCAGTGTACATAGGATAAGTGC 57.722 43.478 19.74 0.00 0.00 4.40
6806 7074 5.698089 CAGTGTACATAGGATAAGTGCATGG 59.302 44.000 0.00 0.00 37.24 3.66
6813 7082 3.825328 AGGATAAGTGCATGGATTCACC 58.175 45.455 0.00 0.00 39.54 4.02
6815 7084 4.079558 AGGATAAGTGCATGGATTCACCTT 60.080 41.667 0.00 0.00 39.86 3.50
6827 7096 7.068716 GCATGGATTCACCTTTAAAGTTATCCT 59.931 37.037 22.31 13.08 39.86 3.24
6883 7152 6.093633 GGAAGTGAGGTCCAAAATACATGTAC 59.906 42.308 7.96 0.00 35.05 2.90
7004 7273 4.929819 TTTTGGAAGTGGCTTAACCTTC 57.070 40.909 0.00 0.00 40.22 3.46
7019 7288 4.302559 AACCTTCATGTTCCTAAGTCCC 57.697 45.455 0.00 0.00 0.00 4.46
7021 7290 3.519913 ACCTTCATGTTCCTAAGTCCCTC 59.480 47.826 0.00 0.00 0.00 4.30
7069 7356 3.190327 TGGAATTTCGATGCAAACACGAT 59.810 39.130 0.00 0.00 36.02 3.73
7137 7424 4.605640 AACATATGGCAGCAAAACAAGT 57.394 36.364 7.80 0.00 0.00 3.16
7147 7434 5.102313 GCAGCAAAACAAGTAAACAGAAGT 58.898 37.500 0.00 0.00 0.00 3.01
7148 7435 5.576774 GCAGCAAAACAAGTAAACAGAAGTT 59.423 36.000 0.00 0.00 40.40 2.66
7149 7436 6.454186 GCAGCAAAACAAGTAAACAGAAGTTG 60.454 38.462 0.00 0.00 38.17 3.16
7150 7437 6.806249 CAGCAAAACAAGTAAACAGAAGTTGA 59.194 34.615 0.00 0.00 38.17 3.18
7201 7488 4.010349 GGGGGATTTGACTAAGTTGACAG 58.990 47.826 0.00 0.00 0.00 3.51
7239 7526 3.487120 ACTAGTGACTGAACAAACCCC 57.513 47.619 0.00 0.00 0.00 4.95
7343 7631 2.095567 GCATCTGTGTGCCAAACTGTAG 60.096 50.000 0.00 0.00 39.18 2.74
7583 7871 1.202806 GCATTCATTGGGGAGATCGGA 60.203 52.381 0.00 0.00 0.00 4.55
7610 7898 3.204526 GAAGATCAGCCATGAGACCAAG 58.795 50.000 0.00 0.00 39.29 3.61
7619 7907 1.462283 CATGAGACCAAGACTGCAACG 59.538 52.381 0.00 0.00 0.00 4.10
7645 7934 4.642429 ACCTACAGTGGAATGTTCAGTTC 58.358 43.478 0.00 0.00 34.56 3.01
7681 7970 4.522022 AGAAACTTGAGGGAAGAAAGCATG 59.478 41.667 0.00 0.00 35.42 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 4.095946 GGATTGAGGAGATAGGAGCTGAT 58.904 47.826 0.00 0.00 0.00 2.90
97 105 2.837291 CTCCCTCCGCCTCCTCAG 60.837 72.222 0.00 0.00 0.00 3.35
98 106 3.347590 TCTCCCTCCGCCTCCTCA 61.348 66.667 0.00 0.00 0.00 3.86
129 143 1.043673 CCTGGCCGGTAGCTTCTACT 61.044 60.000 11.58 0.00 43.05 2.57
130 144 1.442148 CCTGGCCGGTAGCTTCTAC 59.558 63.158 11.58 0.00 43.05 2.59
134 148 3.787001 GAGCCTGGCCGGTAGCTT 61.787 66.667 16.57 0.00 43.05 3.74
152 166 1.066858 GTCCAATCCACAAGAGAGCGA 60.067 52.381 0.00 0.00 0.00 4.93
153 167 1.363744 GTCCAATCCACAAGAGAGCG 58.636 55.000 0.00 0.00 0.00 5.03
154 168 1.363744 CGTCCAATCCACAAGAGAGC 58.636 55.000 0.00 0.00 0.00 4.09
155 169 2.009042 GCCGTCCAATCCACAAGAGAG 61.009 57.143 0.00 0.00 0.00 3.20
156 170 0.036388 GCCGTCCAATCCACAAGAGA 60.036 55.000 0.00 0.00 0.00 3.10
157 171 0.036010 AGCCGTCCAATCCACAAGAG 60.036 55.000 0.00 0.00 0.00 2.85
158 172 0.400213 AAGCCGTCCAATCCACAAGA 59.600 50.000 0.00 0.00 0.00 3.02
159 173 0.804989 GAAGCCGTCCAATCCACAAG 59.195 55.000 0.00 0.00 0.00 3.16
160 174 0.400213 AGAAGCCGTCCAATCCACAA 59.600 50.000 0.00 0.00 0.00 3.33
162 176 1.087501 GAAGAAGCCGTCCAATCCAC 58.912 55.000 0.00 0.00 0.00 4.02
175 190 2.598000 AGAAGACGACGACGAAGAAG 57.402 50.000 15.32 0.00 42.66 2.85
178 193 2.497915 GAGAAGAAGACGACGACGAAG 58.502 52.381 15.32 0.00 42.66 3.79
201 216 3.054065 AGCAGGGAAGAAATAGGACAAGG 60.054 47.826 0.00 0.00 0.00 3.61
202 217 4.080638 AGAGCAGGGAAGAAATAGGACAAG 60.081 45.833 0.00 0.00 0.00 3.16
203 218 3.846588 AGAGCAGGGAAGAAATAGGACAA 59.153 43.478 0.00 0.00 0.00 3.18
205 220 3.802866 CAGAGCAGGGAAGAAATAGGAC 58.197 50.000 0.00 0.00 0.00 3.85
276 305 0.179936 AAGATGGAGTAGCAGCAGGC 59.820 55.000 0.00 0.00 45.30 4.85
277 306 1.761784 AGAAGATGGAGTAGCAGCAGG 59.238 52.381 0.00 0.00 0.00 4.85
278 307 3.132646 AGAAGAAGATGGAGTAGCAGCAG 59.867 47.826 0.00 0.00 0.00 4.24
279 308 3.102972 AGAAGAAGATGGAGTAGCAGCA 58.897 45.455 0.00 0.00 0.00 4.41
280 309 3.384467 AGAGAAGAAGATGGAGTAGCAGC 59.616 47.826 0.00 0.00 0.00 5.25
281 310 4.889409 AGAGAGAAGAAGATGGAGTAGCAG 59.111 45.833 0.00 0.00 0.00 4.24
282 311 4.865905 AGAGAGAAGAAGATGGAGTAGCA 58.134 43.478 0.00 0.00 0.00 3.49
283 312 4.024048 CGAGAGAGAAGAAGATGGAGTAGC 60.024 50.000 0.00 0.00 0.00 3.58
284 313 4.024048 GCGAGAGAGAAGAAGATGGAGTAG 60.024 50.000 0.00 0.00 0.00 2.57
285 314 3.880490 GCGAGAGAGAAGAAGATGGAGTA 59.120 47.826 0.00 0.00 0.00 2.59
286 315 2.687935 GCGAGAGAGAAGAAGATGGAGT 59.312 50.000 0.00 0.00 0.00 3.85
287 316 2.687425 TGCGAGAGAGAAGAAGATGGAG 59.313 50.000 0.00 0.00 0.00 3.86
288 317 2.687425 CTGCGAGAGAGAAGAAGATGGA 59.313 50.000 0.00 0.00 0.00 3.41
289 318 2.426738 ACTGCGAGAGAGAAGAAGATGG 59.573 50.000 0.00 0.00 0.00 3.51
290 319 3.694734 GACTGCGAGAGAGAAGAAGATG 58.305 50.000 0.00 0.00 0.00 2.90
291 320 2.354510 CGACTGCGAGAGAGAAGAAGAT 59.645 50.000 0.00 0.00 40.82 2.40
331 370 0.749454 ATGGAACCAGCAGCCGATTC 60.749 55.000 0.00 0.00 0.00 2.52
332 371 0.749454 GATGGAACCAGCAGCCGATT 60.749 55.000 4.14 0.00 31.91 3.34
344 383 0.391263 GTGGTGGACCGAGATGGAAC 60.391 60.000 0.00 0.00 42.00 3.62
347 386 2.584608 GGTGGTGGACCGAGATGG 59.415 66.667 0.00 0.00 46.41 3.51
355 394 2.113986 AAGCAGCAGGTGGTGGAC 59.886 61.111 4.79 0.00 43.24 4.02
369 408 2.164026 CGGCGAGAGAAGAGCAAGC 61.164 63.158 0.00 0.00 0.00 4.01
371 410 2.573869 CCGGCGAGAGAAGAGCAA 59.426 61.111 9.30 0.00 0.00 3.91
372 411 4.135153 GCCGGCGAGAGAAGAGCA 62.135 66.667 12.58 0.00 0.00 4.26
385 424 3.233259 AAACAAAATGGGCCGCCGG 62.233 57.895 0.00 0.00 0.00 6.13
391 430 1.977854 AGGGGAAGAAACAAAATGGGC 59.022 47.619 0.00 0.00 0.00 5.36
399 445 4.100808 CCAAAATCACAAGGGGAAGAAACA 59.899 41.667 0.00 0.00 0.00 2.83
430 478 2.100631 CGTCATGGTTGGTCGCCTC 61.101 63.158 0.00 0.00 0.00 4.70
441 489 1.482593 AGTAGGAAGAAGGCGTCATGG 59.517 52.381 2.69 0.00 0.00 3.66
442 490 2.969628 AGTAGGAAGAAGGCGTCATG 57.030 50.000 2.69 0.00 0.00 3.07
443 491 4.024670 AGTTAGTAGGAAGAAGGCGTCAT 58.975 43.478 2.69 0.00 0.00 3.06
444 492 3.428532 AGTTAGTAGGAAGAAGGCGTCA 58.571 45.455 2.69 0.00 0.00 4.35
445 493 5.125257 AGTTAGTTAGTAGGAAGAAGGCGTC 59.875 44.000 0.00 0.00 0.00 5.19
446 494 5.015515 AGTTAGTTAGTAGGAAGAAGGCGT 58.984 41.667 0.00 0.00 0.00 5.68
447 495 5.579564 AGTTAGTTAGTAGGAAGAAGGCG 57.420 43.478 0.00 0.00 0.00 5.52
448 496 6.971756 CGTTAGTTAGTTAGTAGGAAGAAGGC 59.028 42.308 0.00 0.00 0.00 4.35
449 497 8.273780 TCGTTAGTTAGTTAGTAGGAAGAAGG 57.726 38.462 0.00 0.00 0.00 3.46
450 498 7.909641 GCTCGTTAGTTAGTTAGTAGGAAGAAG 59.090 40.741 0.00 0.00 0.00 2.85
451 499 7.609532 AGCTCGTTAGTTAGTTAGTAGGAAGAA 59.390 37.037 0.00 0.00 0.00 2.52
452 500 7.065563 CAGCTCGTTAGTTAGTTAGTAGGAAGA 59.934 40.741 0.00 0.00 0.00 2.87
453 501 7.188157 CAGCTCGTTAGTTAGTTAGTAGGAAG 58.812 42.308 0.00 0.00 0.00 3.46
454 502 6.404074 GCAGCTCGTTAGTTAGTTAGTAGGAA 60.404 42.308 0.00 0.00 0.00 3.36
455 503 5.065731 GCAGCTCGTTAGTTAGTTAGTAGGA 59.934 44.000 0.00 0.00 0.00 2.94
456 504 5.163683 TGCAGCTCGTTAGTTAGTTAGTAGG 60.164 44.000 0.00 0.00 0.00 3.18
457 505 5.877031 TGCAGCTCGTTAGTTAGTTAGTAG 58.123 41.667 0.00 0.00 0.00 2.57
458 506 5.885230 TGCAGCTCGTTAGTTAGTTAGTA 57.115 39.130 0.00 0.00 0.00 1.82
459 507 4.778534 TGCAGCTCGTTAGTTAGTTAGT 57.221 40.909 0.00 0.00 0.00 2.24
460 508 4.563184 CCTTGCAGCTCGTTAGTTAGTTAG 59.437 45.833 0.00 0.00 0.00 2.34
461 509 4.491676 CCTTGCAGCTCGTTAGTTAGTTA 58.508 43.478 0.00 0.00 0.00 2.24
462 510 3.326747 CCTTGCAGCTCGTTAGTTAGTT 58.673 45.455 0.00 0.00 0.00 2.24
463 511 2.931320 GCCTTGCAGCTCGTTAGTTAGT 60.931 50.000 0.00 0.00 0.00 2.24
464 512 1.661112 GCCTTGCAGCTCGTTAGTTAG 59.339 52.381 0.00 0.00 0.00 2.34
465 513 1.275291 AGCCTTGCAGCTCGTTAGTTA 59.725 47.619 0.00 0.00 39.48 2.24
471 519 1.536073 TACTCAGCCTTGCAGCTCGT 61.536 55.000 0.00 1.72 42.61 4.18
473 521 1.338579 ACTTACTCAGCCTTGCAGCTC 60.339 52.381 0.00 0.00 42.61 4.09
501 549 1.227943 GGAAGTGTGGTGCTGCAGA 60.228 57.895 20.43 0.00 0.00 4.26
502 550 0.892358 ATGGAAGTGTGGTGCTGCAG 60.892 55.000 10.11 10.11 0.00 4.41
503 551 0.467844 AATGGAAGTGTGGTGCTGCA 60.468 50.000 0.00 0.00 0.00 4.41
506 554 2.664402 AAGAATGGAAGTGTGGTGCT 57.336 45.000 0.00 0.00 0.00 4.40
507 555 2.887152 AGAAAGAATGGAAGTGTGGTGC 59.113 45.455 0.00 0.00 0.00 5.01
508 556 5.300286 AGAAAGAAAGAATGGAAGTGTGGTG 59.700 40.000 0.00 0.00 0.00 4.17
509 557 5.449553 AGAAAGAAAGAATGGAAGTGTGGT 58.550 37.500 0.00 0.00 0.00 4.16
510 558 6.264067 AGAAGAAAGAAAGAATGGAAGTGTGG 59.736 38.462 0.00 0.00 0.00 4.17
512 560 7.888250 AAGAAGAAAGAAAGAATGGAAGTGT 57.112 32.000 0.00 0.00 0.00 3.55
513 561 9.670719 GTAAAGAAGAAAGAAAGAATGGAAGTG 57.329 33.333 0.00 0.00 0.00 3.16
514 562 9.408648 TGTAAAGAAGAAAGAAAGAATGGAAGT 57.591 29.630 0.00 0.00 0.00 3.01
564 622 3.193691 CCCATCCGTCCATGTACTCTATC 59.806 52.174 0.00 0.00 0.00 2.08
570 628 3.547054 TTAACCCATCCGTCCATGTAC 57.453 47.619 0.00 0.00 0.00 2.90
571 629 4.781775 AATTAACCCATCCGTCCATGTA 57.218 40.909 0.00 0.00 0.00 2.29
589 657 7.571059 GCGACAAATTCAACCAATTGCTTAATT 60.571 33.333 0.00 0.81 34.69 1.40
595 663 3.059166 AGCGACAAATTCAACCAATTGC 58.941 40.909 0.00 0.00 34.69 3.56
602 670 4.434330 CCGTTCTAGAGCGACAAATTCAAC 60.434 45.833 27.88 1.63 37.19 3.18
621 700 6.127897 GGAAAACATCTCATCATTCTTCCGTT 60.128 38.462 0.00 0.00 0.00 4.44
637 716 7.323420 CCAAAATTAAGAGGGAGGAAAACATC 58.677 38.462 0.00 0.00 0.00 3.06
640 719 5.568825 GCCCAAAATTAAGAGGGAGGAAAAC 60.569 44.000 0.00 0.00 44.30 2.43
641 720 4.530553 GCCCAAAATTAAGAGGGAGGAAAA 59.469 41.667 0.00 0.00 44.30 2.29
660 746 2.237143 CAGAGTACATTCAGGAAGCCCA 59.763 50.000 0.00 0.00 33.88 5.36
661 747 2.501723 TCAGAGTACATTCAGGAAGCCC 59.498 50.000 0.00 0.00 0.00 5.19
662 748 3.895232 TCAGAGTACATTCAGGAAGCC 57.105 47.619 0.00 0.00 0.00 4.35
663 749 5.241662 AGTTTCAGAGTACATTCAGGAAGC 58.758 41.667 0.00 0.00 0.00 3.86
664 750 7.736447 AAAGTTTCAGAGTACATTCAGGAAG 57.264 36.000 0.00 0.00 0.00 3.46
665 751 9.052759 GTAAAAGTTTCAGAGTACATTCAGGAA 57.947 33.333 0.00 0.00 0.00 3.36
666 752 8.429641 AGTAAAAGTTTCAGAGTACATTCAGGA 58.570 33.333 0.00 0.00 0.00 3.86
667 753 8.608844 AGTAAAAGTTTCAGAGTACATTCAGG 57.391 34.615 0.00 0.00 0.00 3.86
693 779 7.716560 TGAGGAATGTTCGTCATATTCATTCAT 59.283 33.333 12.58 9.77 44.35 2.57
707 793 6.426980 TCATCTGAATTTGAGGAATGTTCG 57.573 37.500 0.00 0.00 0.00 3.95
730 816 7.306013 TGATGAGGTTGAGGGATTACTACTAT 58.694 38.462 0.00 0.00 0.00 2.12
732 818 5.529289 TGATGAGGTTGAGGGATTACTACT 58.471 41.667 0.00 0.00 0.00 2.57
733 819 5.871396 TGATGAGGTTGAGGGATTACTAC 57.129 43.478 0.00 0.00 0.00 2.73
746 832 2.885135 TGGATGCAGTTGATGAGGTT 57.115 45.000 0.00 0.00 0.00 3.50
750 836 2.026075 TGGTGATGGATGCAGTTGATGA 60.026 45.455 0.00 0.00 0.00 2.92
764 850 2.350772 GGAAACGAAAGCAGTGGTGATG 60.351 50.000 0.00 0.00 0.00 3.07
777 863 3.426963 GCAGCGAATAATTGGGAAACGAA 60.427 43.478 0.00 0.00 0.00 3.85
778 864 2.096819 GCAGCGAATAATTGGGAAACGA 59.903 45.455 0.00 0.00 0.00 3.85
779 865 2.159448 TGCAGCGAATAATTGGGAAACG 60.159 45.455 0.00 0.00 0.00 3.60
780 866 3.179048 GTGCAGCGAATAATTGGGAAAC 58.821 45.455 0.00 0.00 0.00 2.78
781 867 2.822561 TGTGCAGCGAATAATTGGGAAA 59.177 40.909 0.00 0.00 0.00 3.13
782 868 2.163412 GTGTGCAGCGAATAATTGGGAA 59.837 45.455 0.00 0.00 0.00 3.97
783 869 1.742831 GTGTGCAGCGAATAATTGGGA 59.257 47.619 0.00 0.00 0.00 4.37
784 870 1.531677 CGTGTGCAGCGAATAATTGGG 60.532 52.381 4.77 0.00 0.00 4.12
785 871 1.813896 CGTGTGCAGCGAATAATTGG 58.186 50.000 4.77 0.00 0.00 3.16
786 872 1.182673 GCGTGTGCAGCGAATAATTG 58.817 50.000 13.88 0.00 42.15 2.32
787 873 3.604130 GCGTGTGCAGCGAATAATT 57.396 47.368 13.88 0.00 42.15 1.40
798 884 2.802667 CGGCTATGTCTGCGTGTGC 61.803 63.158 0.00 0.00 43.20 4.57
799 885 0.528466 ATCGGCTATGTCTGCGTGTG 60.528 55.000 0.00 0.00 0.00 3.82
800 886 0.175760 AATCGGCTATGTCTGCGTGT 59.824 50.000 0.00 0.00 0.00 4.49
801 887 0.855349 GAATCGGCTATGTCTGCGTG 59.145 55.000 0.00 0.00 0.00 5.34
802 888 0.459899 TGAATCGGCTATGTCTGCGT 59.540 50.000 0.00 0.00 0.00 5.24
803 889 1.788258 ATGAATCGGCTATGTCTGCG 58.212 50.000 0.00 0.00 0.00 5.18
814 900 3.748048 AGCCATACGAATGAATGAATCGG 59.252 43.478 0.00 0.00 40.71 4.18
833 919 8.368962 AGGTGGATATATTAAGAGAGTTAGCC 57.631 38.462 0.00 0.00 0.00 3.93
835 921 9.535170 TGGAGGTGGATATATTAAGAGAGTTAG 57.465 37.037 0.00 0.00 0.00 2.34
841 927 9.930693 GTAAACTGGAGGTGGATATATTAAGAG 57.069 37.037 0.00 0.00 0.00 2.85
842 928 9.442062 TGTAAACTGGAGGTGGATATATTAAGA 57.558 33.333 0.00 0.00 0.00 2.10
843 929 9.490379 GTGTAAACTGGAGGTGGATATATTAAG 57.510 37.037 0.00 0.00 0.00 1.85
844 930 8.994500 TGTGTAAACTGGAGGTGGATATATTAA 58.006 33.333 0.00 0.00 0.00 1.40
846 932 7.446106 TGTGTAAACTGGAGGTGGATATATT 57.554 36.000 0.00 0.00 0.00 1.28
847 933 7.446106 TTGTGTAAACTGGAGGTGGATATAT 57.554 36.000 0.00 0.00 0.00 0.86
850 936 4.564821 GCTTGTGTAAACTGGAGGTGGATA 60.565 45.833 0.00 0.00 0.00 2.59
851 937 3.810743 GCTTGTGTAAACTGGAGGTGGAT 60.811 47.826 0.00 0.00 0.00 3.41
857 953 2.618241 TGCTTGCTTGTGTAAACTGGAG 59.382 45.455 0.00 0.00 0.00 3.86
907 1004 3.003480 GTTGTGGTGCTACCTCTGAATC 58.997 50.000 6.83 0.00 39.58 2.52
916 1013 3.365364 GCTGAAGAATGTTGTGGTGCTAC 60.365 47.826 0.00 0.00 0.00 3.58
920 1017 2.030540 CAGGCTGAAGAATGTTGTGGTG 60.031 50.000 9.42 0.00 0.00 4.17
923 1020 1.884579 AGCAGGCTGAAGAATGTTGTG 59.115 47.619 20.86 0.00 0.00 3.33
952 1049 7.824672 TGCACATATATCTATCTCTGTCAGTG 58.175 38.462 0.00 0.00 0.00 3.66
965 1062 8.915057 ACTGAAATTAAGCTGCACATATATCT 57.085 30.769 1.02 0.00 0.00 1.98
970 1067 9.787532 GAAATTACTGAAATTAAGCTGCACATA 57.212 29.630 1.02 0.00 36.76 2.29
971 1068 7.485913 CGAAATTACTGAAATTAAGCTGCACAT 59.514 33.333 1.02 0.00 36.76 3.21
972 1069 6.801377 CGAAATTACTGAAATTAAGCTGCACA 59.199 34.615 1.02 0.00 36.76 4.57
973 1070 6.237306 GCGAAATTACTGAAATTAAGCTGCAC 60.237 38.462 1.02 0.00 36.76 4.57
974 1071 5.799936 GCGAAATTACTGAAATTAAGCTGCA 59.200 36.000 1.02 0.00 36.76 4.41
976 1073 6.321717 TGGCGAAATTACTGAAATTAAGCTG 58.678 36.000 0.00 0.00 38.79 4.24
1020 1126 2.042831 GCTGGTGCTGGTGGTGATC 61.043 63.158 0.00 0.00 36.03 2.92
1047 1159 4.462508 AGATGACAGACACACATACCTG 57.537 45.455 0.00 0.00 0.00 4.00
1069 1181 3.189606 TGCAGGATTAGGAGGGAAAAGA 58.810 45.455 0.00 0.00 0.00 2.52
1135 1254 8.815189 GCAGCAGATACAGATACATGTATATTG 58.185 37.037 18.28 19.52 44.47 1.90
1355 1477 5.025826 CGTCATCATCATCATTTGTGTGTG 58.974 41.667 0.00 0.00 0.00 3.82
1356 1478 4.937015 TCGTCATCATCATCATTTGTGTGT 59.063 37.500 0.00 0.00 0.00 3.72
1479 1607 1.076559 CATGGCCTTGAGCATCCCA 60.077 57.895 13.33 0.00 46.50 4.37
1524 1652 0.176680 CTGCAGATGCTAGGAACCGT 59.823 55.000 8.42 0.00 42.66 4.83
1708 1836 9.878737 ACTGGTATATATAAGTTACCACTGTCT 57.121 33.333 8.92 0.00 40.25 3.41
1792 1924 5.503927 ACATAAACAGCTCCATCAGAACAT 58.496 37.500 0.00 0.00 0.00 2.71
1795 1927 5.164620 TGACATAAACAGCTCCATCAGAA 57.835 39.130 0.00 0.00 0.00 3.02
1941 2081 4.920999 TGGAATCAAATGATGACAGACCA 58.079 39.130 0.00 0.00 41.93 4.02
1947 2087 4.646040 TGTCCCATGGAATCAAATGATGAC 59.354 41.667 15.22 7.83 41.93 3.06
2060 2201 5.220931 CCCTCTCAAGTTGTGTTTCAGAAAG 60.221 44.000 2.11 0.00 0.00 2.62
2094 2235 0.814457 TTTCCTGGCAACACACACAC 59.186 50.000 0.00 0.00 46.17 3.82
2096 2237 1.202405 CCTTTTCCTGGCAACACACAC 60.202 52.381 0.00 0.00 46.17 3.82
2097 2238 1.110442 CCTTTTCCTGGCAACACACA 58.890 50.000 0.00 0.00 46.17 3.72
2098 2239 1.067060 GTCCTTTTCCTGGCAACACAC 59.933 52.381 0.00 0.00 46.17 3.82
2100 2241 0.673985 GGTCCTTTTCCTGGCAACAC 59.326 55.000 0.00 0.00 46.17 3.32
2102 2243 1.632589 ATGGTCCTTTTCCTGGCAAC 58.367 50.000 0.00 0.00 0.00 4.17
2104 2245 1.969923 CAAATGGTCCTTTTCCTGGCA 59.030 47.619 0.00 0.00 0.00 4.92
2105 2246 1.276138 CCAAATGGTCCTTTTCCTGGC 59.724 52.381 0.00 0.00 0.00 4.85
2214 2355 1.417890 AGAGTGACACCTTGGTTCAGG 59.582 52.381 0.84 0.00 40.23 3.86
2321 2462 0.937304 GCACTGTTTCAGCTTCGTCA 59.063 50.000 0.00 0.00 34.37 4.35
2334 2475 1.037493 TGTGGAAGTAGTCGCACTGT 58.963 50.000 0.00 0.00 31.99 3.55
2355 2496 1.339055 TGCTCCTCCATGACCTTTTCG 60.339 52.381 0.00 0.00 0.00 3.46
2642 2822 6.060788 AGCATTCAAGAATACCTTCTGATCC 58.939 40.000 0.00 0.00 40.93 3.36
2667 2856 5.560722 TCCTTCATACCAACAGAGTTTGA 57.439 39.130 0.00 0.00 0.00 2.69
2701 2890 1.823610 TCTCTGCATGACTGACAGGAG 59.176 52.381 7.51 2.09 31.40 3.69
2737 2926 4.569966 CAGAAATGTGCTCCACTGATCTAC 59.430 45.833 0.00 0.00 35.11 2.59
2738 2927 4.467438 TCAGAAATGTGCTCCACTGATCTA 59.533 41.667 0.00 0.00 35.11 1.98
2897 3086 2.693591 TGATCCCGAGACTGATGTTACC 59.306 50.000 0.00 0.00 0.00 2.85
3121 3313 4.789807 AGCCAGTATCATTTGCTGATCTT 58.210 39.130 0.00 0.00 43.70 2.40
3155 3347 5.697178 TGACAATTGCTCATGTTTTCCAATG 59.303 36.000 5.05 0.00 0.00 2.82
3233 3425 1.542472 TCGTCAGCCTCGTCAATGTAA 59.458 47.619 0.00 0.00 0.00 2.41
3305 3500 4.713553 TCTGCTCACAAATGACCTGTTTA 58.286 39.130 0.00 0.00 0.00 2.01
3614 3829 6.371548 TCATGAGCAGTTGTAAGTACCAAATC 59.628 38.462 0.00 0.00 0.00 2.17
3650 3865 4.010349 GCTTAGGTTCTGCCACAAGTTAT 58.990 43.478 0.00 0.00 40.61 1.89
3652 3867 2.158608 AGCTTAGGTTCTGCCACAAGTT 60.159 45.455 0.00 0.00 40.61 2.66
3700 3915 4.219944 GTGGGTGTAAGAGTACATGTGAGA 59.780 45.833 9.11 0.00 42.18 3.27
3819 4034 3.436704 CGCTTTCCTGCTCACATCTTAAA 59.563 43.478 0.00 0.00 0.00 1.52
3820 4035 3.002791 CGCTTTCCTGCTCACATCTTAA 58.997 45.455 0.00 0.00 0.00 1.85
3843 4058 7.374272 TCACTCTTCGAGATGATTTGGATATC 58.626 38.462 0.00 0.00 33.32 1.63
3876 4091 1.880340 GAGATTCCGTGCCTCAGCG 60.880 63.158 0.00 0.00 44.31 5.18
3921 4136 2.358898 GTCAGCAGAGTGGCTTGAAAAA 59.641 45.455 0.00 0.00 42.71 1.94
3942 4157 2.762887 TCCACAGACTGATAGCCTTCTG 59.237 50.000 10.08 4.78 41.14 3.02
3957 4172 0.104120 TGTTCACCGAGTGTCCACAG 59.896 55.000 0.00 0.00 34.79 3.66
4002 4217 1.797537 GCTAAAAGGTGCTTGCGCG 60.798 57.895 0.00 0.00 39.65 6.86
4003 4218 0.109132 ATGCTAAAAGGTGCTTGCGC 60.109 50.000 0.00 0.00 0.00 6.09
4005 4220 3.652274 TGAAATGCTAAAAGGTGCTTGC 58.348 40.909 0.00 0.00 0.00 4.01
4008 4223 4.584325 TGAACTGAAATGCTAAAAGGTGCT 59.416 37.500 0.00 0.00 0.00 4.40
4039 4255 8.341903 CACACACACACAAGAAATAACTTATCA 58.658 33.333 0.00 0.00 0.00 2.15
4040 4256 8.342634 ACACACACACACAAGAAATAACTTATC 58.657 33.333 0.00 0.00 0.00 1.75
4042 4258 7.119992 ACACACACACACACAAGAAATAACTTA 59.880 33.333 0.00 0.00 0.00 2.24
4052 4268 7.305935 GCAATAAAATACACACACACACACAAG 60.306 37.037 0.00 0.00 0.00 3.16
4053 4269 6.473778 GCAATAAAATACACACACACACACAA 59.526 34.615 0.00 0.00 0.00 3.33
4057 4273 7.636259 ATTGCAATAAAATACACACACACAC 57.364 32.000 11.02 0.00 0.00 3.82
4078 4294 8.424274 AGTACCTTTTTGCAAGAGAAAAATTG 57.576 30.769 12.08 2.46 32.38 2.32
4079 4295 8.882736 CAAGTACCTTTTTGCAAGAGAAAAATT 58.117 29.630 12.08 0.00 32.38 1.82
4080 4296 8.040727 ACAAGTACCTTTTTGCAAGAGAAAAAT 58.959 29.630 12.08 0.10 32.38 1.82
4115 4343 5.763876 TCCCAAACCAAAAGGAAGAAAAA 57.236 34.783 0.00 0.00 0.00 1.94
4315 4545 0.179056 GGTATGGACGGTGACCATGG 60.179 60.000 11.19 11.19 46.05 3.66
4326 4556 5.253330 TGAATTCAGAAGGTTGGTATGGAC 58.747 41.667 3.38 0.00 0.00 4.02
4328 4558 5.256474 ACTGAATTCAGAAGGTTGGTATGG 58.744 41.667 36.15 10.66 46.59 2.74
4329 4559 6.176183 AGACTGAATTCAGAAGGTTGGTATG 58.824 40.000 36.15 11.07 46.59 2.39
4350 4580 2.770164 ACACCACAGAGGCATTAGAC 57.230 50.000 0.00 0.00 43.14 2.59
4365 4595 3.572255 TGGCAAGAACCTAAATGAACACC 59.428 43.478 0.00 0.00 0.00 4.16
4372 4602 3.589288 ACTCCTCTGGCAAGAACCTAAAT 59.411 43.478 0.00 0.00 30.03 1.40
4426 4656 4.458295 AGGAAACTGATTCTTCATGTGCTG 59.542 41.667 0.00 0.00 41.13 4.41
4482 4712 7.709182 TCATCGAGTTCAGAAAACTCTTTAACA 59.291 33.333 14.11 0.00 43.28 2.41
4498 4728 3.849911 TGACCAACATCTCATCGAGTTC 58.150 45.455 0.00 0.00 0.00 3.01
4506 4736 4.645535 CCTTCTCTTTGACCAACATCTCA 58.354 43.478 0.00 0.00 0.00 3.27
4518 4748 2.031682 CACAAACTCGGCCTTCTCTTTG 60.032 50.000 0.00 4.09 0.00 2.77
4575 4805 8.048534 ACCAGAAATCATGAGTAACTTCATTG 57.951 34.615 0.09 0.00 35.67 2.82
4669 4899 1.524621 GACACCCCATGCCGATCAG 60.525 63.158 0.00 0.00 0.00 2.90
4700 4930 7.341256 AGCCAATTTACATCAAGAATCTCATGT 59.659 33.333 11.20 11.20 33.95 3.21
4788 5018 6.575162 TCTTTCTTTTCCAGCAGATTTACC 57.425 37.500 0.00 0.00 0.00 2.85
4851 5081 1.621317 TCCAGTTGCTGTTCGGTCATA 59.379 47.619 0.00 0.00 0.00 2.15
4862 5092 4.400961 GCCTCGGCTCCAGTTGCT 62.401 66.667 0.00 0.00 38.26 3.91
5084 5323 7.847166 AAAGGAAATCGAACGTTGTAAAATC 57.153 32.000 5.00 0.00 0.00 2.17
5277 5525 3.753272 GCCTCTTCAGCAGATTGTTTGTA 59.247 43.478 0.00 0.00 0.00 2.41
5712 5960 2.945008 TCCATTTCTTGCATCGGCTTAG 59.055 45.455 0.00 0.00 41.91 2.18
5863 6111 2.179517 CGGTGTCGAGAGAGTGGC 59.820 66.667 0.00 0.00 43.49 5.01
5930 6178 8.744568 TGCTCCATGTATACATTGATGTAAAA 57.255 30.769 15.85 0.00 45.40 1.52
5968 6235 3.486841 GCACTGTAAAAACACATGCACAG 59.513 43.478 0.00 0.00 39.38 3.66
6025 6292 2.426522 TCAATCTTCACTTCCTTGCCG 58.573 47.619 0.00 0.00 0.00 5.69
6184 6451 7.315890 CAATATAGATTGGAGAGACACGCATA 58.684 38.462 1.97 0.00 39.10 3.14
6342 6610 3.935450 TGCAAGCGAGCGTAATAATTTC 58.065 40.909 0.00 0.00 37.31 2.17
6376 6644 4.098654 CCCACAAGTAGAGAGTAGTCCATG 59.901 50.000 0.00 0.00 0.00 3.66
6781 7049 5.276461 TGCACTTATCCTATGTACACTGG 57.724 43.478 0.00 3.43 0.00 4.00
6797 7065 5.539955 ACTTTAAAGGTGAATCCATGCACTT 59.460 36.000 19.14 0.00 39.02 3.16
6798 7066 5.079643 ACTTTAAAGGTGAATCCATGCACT 58.920 37.500 19.14 0.00 39.02 4.40
6802 7070 8.525290 AGGATAACTTTAAAGGTGAATCCATG 57.475 34.615 26.38 0.78 39.02 3.66
6838 7107 3.977326 TCCCCCAAAAGTTTGCCTAAAAT 59.023 39.130 0.00 0.00 36.86 1.82
6908 7177 8.128582 TGTGATTTCACTTTACTCATTGTGAAC 58.871 33.333 11.67 0.00 45.32 3.18
7004 7273 4.944317 GGAAAAGAGGGACTTAGGAACATG 59.056 45.833 0.00 0.00 41.55 3.21
7019 7288 5.638783 GCATTGTCTCTGATTGGAAAAGAG 58.361 41.667 0.00 0.00 39.05 2.85
7021 7290 4.409570 CGCATTGTCTCTGATTGGAAAAG 58.590 43.478 0.00 0.00 0.00 2.27
7069 7356 9.447157 TGAATATTGATGCCATTATGATACGAA 57.553 29.630 0.00 0.00 0.00 3.85
7137 7424 5.304686 AGGATGGTGTCAACTTCTGTTTA 57.695 39.130 3.97 0.00 33.52 2.01
7147 7434 2.627945 GTGCGATTAGGATGGTGTCAA 58.372 47.619 0.00 0.00 0.00 3.18
7148 7435 1.470805 CGTGCGATTAGGATGGTGTCA 60.471 52.381 0.00 0.00 0.00 3.58
7149 7436 1.202371 TCGTGCGATTAGGATGGTGTC 60.202 52.381 0.00 0.00 0.00 3.67
7150 7437 0.821517 TCGTGCGATTAGGATGGTGT 59.178 50.000 0.00 0.00 0.00 4.16
7190 7477 3.003480 GGGTTGCTAGCTGTCAACTTAG 58.997 50.000 23.22 2.84 41.53 2.18
7199 7486 3.133721 AGTTCTCATAGGGTTGCTAGCTG 59.866 47.826 17.23 3.79 0.00 4.24
7201 7488 3.828875 AGTTCTCATAGGGTTGCTAGC 57.171 47.619 8.10 8.10 0.00 3.42
7305 7593 2.581354 CTGAGTTGAGGGAGGCCG 59.419 66.667 0.00 0.00 0.00 6.13
7583 7871 1.770658 TCATGGCTGATCTTCCGGAAT 59.229 47.619 19.21 3.02 0.00 3.01
7619 7907 2.200373 ACATTCCACTGTAGGTTGCC 57.800 50.000 0.00 0.00 0.00 4.52
7645 7934 6.162777 CCTCAAGTTTCTCCTCTGTTTCTAG 58.837 44.000 0.00 0.00 0.00 2.43
7681 7970 6.487299 AAGTAAGACCATTCTGGACTATCC 57.513 41.667 0.00 0.00 41.50 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.