Multiple sequence alignment - TraesCS2D01G570700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G570700 chr2D 100.000 4111 0 0 1 4111 637530262 637526152 0.000000e+00 7592.0
1 TraesCS2D01G570700 chr2D 82.869 251 21 6 2315 2565 637582032 637582260 5.390000e-49 206.0
2 TraesCS2D01G570700 chr2D 88.304 171 18 2 487 656 99959429 99959260 1.940000e-48 204.0
3 TraesCS2D01G570700 chr2D 89.041 73 0 1 1 65 120260053 120260125 2.630000e-12 84.2
4 TraesCS2D01G570700 chr2D 97.778 45 1 0 1 45 315676851 315676895 1.230000e-10 78.7
5 TraesCS2D01G570700 chr2A 94.109 2105 79 20 2020 4111 762497475 762499547 0.000000e+00 3158.0
6 TraesCS2D01G570700 chr2A 86.996 992 50 31 734 1669 762496506 762497474 0.000000e+00 1044.0
7 TraesCS2D01G570700 chr2A 89.352 432 36 4 65 490 762494014 762494441 6.050000e-148 534.0
8 TraesCS2D01G570700 chr2A 84.393 519 62 8 2057 2571 762468662 762468159 3.690000e-135 492.0
9 TraesCS2D01G570700 chr2A 78.316 475 79 9 2792 3251 761575422 761575887 6.730000e-73 285.0
10 TraesCS2D01G570700 chr2A 78.270 474 81 7 2795 3254 761827816 761827351 6.730000e-73 285.0
11 TraesCS2D01G570700 chr2A 76.699 515 83 19 2074 2566 741986068 741985569 6.820000e-63 252.0
12 TraesCS2D01G570700 chr2A 78.806 335 66 4 3533 3863 112756350 112756017 1.920000e-53 220.0
13 TraesCS2D01G570700 chr2A 85.185 108 14 2 3996 4101 10847299 10847406 4.340000e-20 110.0
14 TraesCS2D01G570700 chr2A 94.737 38 1 1 38 75 493875128 493875164 1.600000e-04 58.4
15 TraesCS2D01G570700 chr2B 92.491 2184 117 24 1842 3988 794899664 794897491 0.000000e+00 3081.0
16 TraesCS2D01G570700 chr2B 91.425 898 28 19 909 1789 794900538 794899673 0.000000e+00 1186.0
17 TraesCS2D01G570700 chr2B 93.272 327 22 0 65 391 794906715 794906389 2.220000e-132 483.0
18 TraesCS2D01G570700 chr2B 89.697 165 16 1 487 651 144406738 144406901 4.160000e-50 209.0
19 TraesCS2D01G570700 chr2B 88.166 169 4 7 734 890 794900781 794900617 1.950000e-43 187.0
20 TraesCS2D01G570700 chr2B 95.699 93 4 0 387 479 794900932 794900840 2.560000e-32 150.0
21 TraesCS2D01G570700 chr2B 82.877 146 21 3 2792 2933 796052205 796052350 1.200000e-25 128.0
22 TraesCS2D01G570700 chr2B 100.000 37 0 0 679 715 794900803 794900767 7.370000e-08 69.4
23 TraesCS2D01G570700 chr2B 97.222 36 1 0 36 71 508299573 508299608 1.230000e-05 62.1
24 TraesCS2D01G570700 chr2B 97.222 36 1 0 36 71 751446012 751446047 1.230000e-05 62.1
25 TraesCS2D01G570700 chr3D 91.358 162 14 0 489 650 87926000 87926161 5.350000e-54 222.0
26 TraesCS2D01G570700 chr3D 89.157 166 18 0 489 654 6667437 6667272 1.500000e-49 207.0
27 TraesCS2D01G570700 chr3D 91.566 83 6 1 3996 4077 2137846 2137764 3.360000e-21 113.0
28 TraesCS2D01G570700 chr3D 100.000 44 0 0 1 44 436064787 436064830 9.470000e-12 82.4
29 TraesCS2D01G570700 chrUn 89.820 167 17 0 489 655 141680907 141680741 8.950000e-52 215.0
30 TraesCS2D01G570700 chr5A 89.697 165 17 0 489 653 361906824 361906660 1.160000e-50 211.0
31 TraesCS2D01G570700 chr5A 97.297 37 1 0 36 72 607152121 607152085 3.430000e-06 63.9
32 TraesCS2D01G570700 chr4D 90.123 162 16 0 489 650 34661688 34661527 1.160000e-50 211.0
33 TraesCS2D01G570700 chr4D 97.727 44 1 0 1 44 89610920 89610877 4.410000e-10 76.8
34 TraesCS2D01G570700 chr4D 97.727 44 1 0 1 44 367472853 367472896 4.410000e-10 76.8
35 TraesCS2D01G570700 chr4D 87.500 72 1 1 1 64 371366108 371366179 4.410000e-10 76.8
36 TraesCS2D01G570700 chr4D 87.500 72 1 1 1 64 372831135 372831206 4.410000e-10 76.8
37 TraesCS2D01G570700 chr1D 89.080 174 14 2 486 655 423040740 423040568 1.160000e-50 211.0
38 TraesCS2D01G570700 chr1D 87.356 174 22 0 477 650 463381893 463382066 2.510000e-47 200.0
39 TraesCS2D01G570700 chr1D 97.143 35 0 1 3461 3494 493485899 493485933 1.600000e-04 58.4
40 TraesCS2D01G570700 chr3B 90.000 120 10 2 3994 4111 381463490 381463609 1.980000e-33 154.0
41 TraesCS2D01G570700 chr3B 83.696 92 11 3 79 169 820063431 820063343 2.630000e-12 84.2
42 TraesCS2D01G570700 chr1A 86.667 120 13 3 3995 4111 544123631 544123512 3.330000e-26 130.0
43 TraesCS2D01G570700 chr1A 97.143 35 0 1 3461 3494 591613039 591613073 1.600000e-04 58.4
44 TraesCS2D01G570700 chr7D 86.842 114 12 3 3998 4108 49759780 49759667 1.550000e-24 124.0
45 TraesCS2D01G570700 chr7D 95.000 40 0 2 3456 3494 32707474 32707436 1.230000e-05 62.1
46 TraesCS2D01G570700 chr7D 97.143 35 0 1 3461 3494 47420844 47420878 1.600000e-04 58.4
47 TraesCS2D01G570700 chr7D 100.000 28 0 0 3461 3488 34457137 34457164 7.000000e-03 52.8
48 TraesCS2D01G570700 chr5B 86.207 116 13 3 3996 4108 709163179 709163294 5.580000e-24 122.0
49 TraesCS2D01G570700 chr5B 85.841 113 13 2 3997 4108 594155804 594155694 2.600000e-22 117.0
50 TraesCS2D01G570700 chr6A 74.074 324 59 21 79 399 586356369 586356068 4.340000e-20 110.0
51 TraesCS2D01G570700 chr6A 100.000 44 0 0 1 44 374873295 374873338 9.470000e-12 82.4
52 TraesCS2D01G570700 chr3A 85.437 103 13 2 4000 4100 746945987 746946089 5.620000e-19 106.0
53 TraesCS2D01G570700 chr6D 74.621 264 41 23 79 338 12291003 12290762 4.380000e-15 93.5
54 TraesCS2D01G570700 chr5D 89.041 73 0 1 1 65 430323259 430323187 2.630000e-12 84.2
55 TraesCS2D01G570700 chr5D 97.143 35 0 1 3461 3494 510121237 510121203 1.600000e-04 58.4
56 TraesCS2D01G570700 chr5D 97.059 34 0 1 3461 3493 5223904 5223871 5.740000e-04 56.5
57 TraesCS2D01G570700 chr6B 73.260 273 49 17 69 338 696239449 696239700 1.230000e-10 78.7
58 TraesCS2D01G570700 chr4A 91.379 58 1 3 3996 4053 470960687 470960634 4.410000e-10 76.8
59 TraesCS2D01G570700 chr4A 97.143 35 0 1 3461 3494 662281826 662281792 1.600000e-04 58.4
60 TraesCS2D01G570700 chr7B 97.368 38 0 1 36 73 689309732 689309768 3.430000e-06 63.9
61 TraesCS2D01G570700 chr7B 97.143 35 1 0 36 70 564021889 564021923 4.440000e-05 60.2
62 TraesCS2D01G570700 chr7B 97.143 35 1 0 36 70 581544540 581544506 4.440000e-05 60.2
63 TraesCS2D01G570700 chr7B 97.143 35 0 1 3461 3494 586702050 586702016 1.600000e-04 58.4
64 TraesCS2D01G570700 chr7B 97.143 35 0 1 3461 3494 621292273 621292239 1.600000e-04 58.4
65 TraesCS2D01G570700 chr1B 95.122 41 1 1 31 71 682266420 682266381 3.430000e-06 63.9
66 TraesCS2D01G570700 chr1B 97.143 35 1 0 36 70 621809868 621809834 4.440000e-05 60.2
67 TraesCS2D01G570700 chr7A 97.143 35 0 1 3461 3494 50024868 50024834 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G570700 chr2D 637526152 637530262 4110 True 7592.000000 7592 100.000000 1 4111 1 chr2D.!!$R2 4110
1 TraesCS2D01G570700 chr2A 762494014 762499547 5533 False 1578.666667 3158 90.152333 65 4111 3 chr2A.!!$F4 4046
2 TraesCS2D01G570700 chr2A 762468159 762468662 503 True 492.000000 492 84.393000 2057 2571 1 chr2A.!!$R4 514
3 TraesCS2D01G570700 chr2B 794897491 794900932 3441 True 934.680000 3081 93.556200 387 3988 5 chr2B.!!$R2 3601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 2744 0.034574 AGTACATGCATTCCCCGCAA 60.035 50.0 0.0 0.0 43.84 4.85 F
1304 3450 0.041833 CTTGTGGAGGAGGAGGAGGA 59.958 60.0 0.0 0.0 0.00 3.71 F
1811 3971 0.184933 CCTGGGACCACAAACTTCCA 59.815 55.0 0.0 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 3952 0.184933 TGGAAGTTTGTGGTCCCAGG 59.815 55.0 0.0 0.0 0.0 4.45 R
2572 4748 0.476771 TTTGTCCACCCCCTCAACTC 59.523 55.0 0.0 0.0 0.0 3.01 R
3345 5527 0.469892 ACCCACCCTTGCCAAAAGAG 60.470 55.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.802051 CCACCAGTCCGGCCCATG 62.802 72.222 0.00 0.00 39.03 3.66
25 26 4.033776 CACCAGTCCGGCCCATGT 62.034 66.667 0.00 0.00 39.03 3.21
26 27 3.717294 ACCAGTCCGGCCCATGTC 61.717 66.667 0.00 0.00 39.03 3.06
27 28 3.716195 CCAGTCCGGCCCATGTCA 61.716 66.667 0.00 0.00 0.00 3.58
28 29 2.436646 CAGTCCGGCCCATGTCAC 60.437 66.667 0.00 0.00 0.00 3.67
29 30 2.927856 AGTCCGGCCCATGTCACA 60.928 61.111 0.00 0.00 0.00 3.58
30 31 2.272146 GTCCGGCCCATGTCACAT 59.728 61.111 0.00 0.00 0.00 3.21
31 32 0.980754 AGTCCGGCCCATGTCACATA 60.981 55.000 0.00 0.00 0.00 2.29
32 33 0.532862 GTCCGGCCCATGTCACATAG 60.533 60.000 0.00 0.00 0.00 2.23
33 34 1.893808 CCGGCCCATGTCACATAGC 60.894 63.158 0.00 3.77 0.00 2.97
34 35 1.146930 CGGCCCATGTCACATAGCT 59.853 57.895 10.88 0.00 0.00 3.32
35 36 0.882042 CGGCCCATGTCACATAGCTC 60.882 60.000 10.88 2.51 0.00 4.09
36 37 0.882042 GGCCCATGTCACATAGCTCG 60.882 60.000 10.88 0.00 0.00 5.03
37 38 0.882042 GCCCATGTCACATAGCTCGG 60.882 60.000 4.98 0.00 0.00 4.63
38 39 0.752658 CCCATGTCACATAGCTCGGA 59.247 55.000 0.00 0.00 0.00 4.55
39 40 1.539065 CCCATGTCACATAGCTCGGAC 60.539 57.143 0.00 0.00 0.00 4.79
40 41 1.481240 CATGTCACATAGCTCGGACG 58.519 55.000 0.00 0.00 33.04 4.79
41 42 0.249073 ATGTCACATAGCTCGGACGC 60.249 55.000 0.00 0.00 33.04 5.19
42 43 1.589196 GTCACATAGCTCGGACGCC 60.589 63.158 0.00 0.00 0.00 5.68
43 44 2.279517 CACATAGCTCGGACGCCC 60.280 66.667 0.00 0.00 0.00 6.13
44 45 3.537874 ACATAGCTCGGACGCCCC 61.538 66.667 0.00 0.00 0.00 5.80
45 46 4.301027 CATAGCTCGGACGCCCCC 62.301 72.222 0.00 0.00 0.00 5.40
46 47 4.541648 ATAGCTCGGACGCCCCCT 62.542 66.667 0.00 0.00 0.00 4.79
47 48 3.142770 ATAGCTCGGACGCCCCCTA 62.143 63.158 0.00 0.00 0.00 3.53
48 49 2.651841 ATAGCTCGGACGCCCCCTAA 62.652 60.000 0.00 0.00 0.00 2.69
49 50 2.651841 TAGCTCGGACGCCCCCTAAT 62.652 60.000 0.00 0.00 0.00 1.73
50 51 2.735237 CTCGGACGCCCCCTAATC 59.265 66.667 0.00 0.00 0.00 1.75
51 52 2.841044 TCGGACGCCCCCTAATCC 60.841 66.667 0.00 0.00 0.00 3.01
52 53 3.158648 CGGACGCCCCCTAATCCA 61.159 66.667 0.00 0.00 0.00 3.41
53 54 2.829592 GGACGCCCCCTAATCCAG 59.170 66.667 0.00 0.00 0.00 3.86
54 55 2.819284 GGACGCCCCCTAATCCAGG 61.819 68.421 0.00 0.00 45.07 4.45
72 73 0.618968 GGACTCCCTCAGACACCCAT 60.619 60.000 0.00 0.00 0.00 4.00
87 88 2.896854 CATCGGGGGCACACATCG 60.897 66.667 0.00 0.00 0.00 3.84
147 148 1.065358 AAAGTTACGCCGTGTCGATG 58.935 50.000 0.00 0.00 0.00 3.84
148 149 1.349259 AAGTTACGCCGTGTCGATGC 61.349 55.000 0.00 0.00 0.00 3.91
170 171 1.589993 CATGCCGTCGTAGCTGAGG 60.590 63.158 0.00 0.00 0.00 3.86
180 181 0.108138 GTAGCTGAGGCGGACAATGT 60.108 55.000 0.00 0.00 44.37 2.71
199 200 2.741517 TGTTGTCATGCCGTTGTAGATG 59.258 45.455 0.00 0.00 0.00 2.90
201 202 3.541996 TGTCATGCCGTTGTAGATGAT 57.458 42.857 0.00 0.00 0.00 2.45
231 232 1.650536 CACCGTCGAGATCGCGTAC 60.651 63.158 18.44 13.51 39.60 3.67
248 249 3.476379 GCGTACGTCTTGTCGTTATACTG 59.524 47.826 17.90 0.00 43.80 2.74
285 286 3.466881 TCCGTCTTGTGGACAGGG 58.533 61.111 0.00 0.00 44.70 4.45
286 287 2.358737 CCGTCTTGTGGACAGGGC 60.359 66.667 0.00 0.00 44.70 5.19
287 288 2.425592 CGTCTTGTGGACAGGGCA 59.574 61.111 0.00 0.00 44.70 5.36
312 313 0.110373 GGCGGTGTGTTGTCGAAATC 60.110 55.000 0.00 0.00 0.00 2.17
315 316 1.259507 CGGTGTGTTGTCGAAATCGTT 59.740 47.619 2.41 0.00 40.80 3.85
317 318 2.034076 GTGTGTTGTCGAAATCGTTGC 58.966 47.619 2.41 0.00 40.80 4.17
350 351 0.582005 GATGAAGTATCGGCGTTGGC 59.418 55.000 6.85 0.00 38.90 4.52
354 355 2.206750 GAAGTATCGGCGTTGGCATTA 58.793 47.619 6.85 0.00 42.47 1.90
377 378 2.058798 GTGACGTGTCGACAATGATGT 58.941 47.619 21.95 13.51 44.25 3.06
380 381 2.058798 ACGTGTCGACAATGATGTGTC 58.941 47.619 21.95 3.22 43.75 3.67
391 392 3.541996 ATGATGTGTCGTATGAAGGCA 57.458 42.857 0.00 0.00 0.00 4.75
443 444 3.428999 CCGGAGAAGTCGATGTGTATGTT 60.429 47.826 0.00 0.00 0.00 2.71
490 497 3.007635 GACCAGGTATGTTGCCTTGTAC 58.992 50.000 0.00 0.00 32.90 2.90
491 498 2.642807 ACCAGGTATGTTGCCTTGTACT 59.357 45.455 0.00 0.00 31.24 2.73
492 499 3.270877 CCAGGTATGTTGCCTTGTACTC 58.729 50.000 0.00 0.00 33.31 2.59
493 500 3.270877 CAGGTATGTTGCCTTGTACTCC 58.729 50.000 0.00 0.00 33.31 3.85
494 501 2.238898 AGGTATGTTGCCTTGTACTCCC 59.761 50.000 0.00 0.00 31.04 4.30
495 502 2.238898 GGTATGTTGCCTTGTACTCCCT 59.761 50.000 0.00 0.00 0.00 4.20
496 503 3.308188 GGTATGTTGCCTTGTACTCCCTT 60.308 47.826 0.00 0.00 0.00 3.95
497 504 2.561478 TGTTGCCTTGTACTCCCTTC 57.439 50.000 0.00 0.00 0.00 3.46
498 505 1.270625 TGTTGCCTTGTACTCCCTTCG 60.271 52.381 0.00 0.00 0.00 3.79
499 506 1.053424 TTGCCTTGTACTCCCTTCGT 58.947 50.000 0.00 0.00 0.00 3.85
500 507 1.053424 TGCCTTGTACTCCCTTCGTT 58.947 50.000 0.00 0.00 0.00 3.85
501 508 1.001633 TGCCTTGTACTCCCTTCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
502 509 1.275573 GCCTTGTACTCCCTTCGTTCT 59.724 52.381 0.00 0.00 0.00 3.01
503 510 2.289506 GCCTTGTACTCCCTTCGTTCTT 60.290 50.000 0.00 0.00 0.00 2.52
504 511 3.056322 GCCTTGTACTCCCTTCGTTCTTA 60.056 47.826 0.00 0.00 0.00 2.10
505 512 4.562143 GCCTTGTACTCCCTTCGTTCTTAA 60.562 45.833 0.00 0.00 0.00 1.85
506 513 5.544650 CCTTGTACTCCCTTCGTTCTTAAA 58.455 41.667 0.00 0.00 0.00 1.52
507 514 6.171213 CCTTGTACTCCCTTCGTTCTTAAAT 58.829 40.000 0.00 0.00 0.00 1.40
508 515 7.325694 CCTTGTACTCCCTTCGTTCTTAAATA 58.674 38.462 0.00 0.00 0.00 1.40
509 516 7.985752 CCTTGTACTCCCTTCGTTCTTAAATAT 59.014 37.037 0.00 0.00 0.00 1.28
515 522 8.979534 ACTCCCTTCGTTCTTAAATATAAGTCT 58.020 33.333 0.00 0.00 39.65 3.24
516 523 9.819267 CTCCCTTCGTTCTTAAATATAAGTCTT 57.181 33.333 0.00 0.00 39.65 3.01
537 544 9.750125 AGTCTTTTTAAAGATTTCATTGTGGAC 57.250 29.630 8.07 0.00 45.83 4.02
538 545 9.750125 GTCTTTTTAAAGATTTCATTGTGGACT 57.250 29.630 8.07 0.00 45.83 3.85
545 552 7.539712 AAGATTTCATTGTGGACTACATACG 57.460 36.000 0.00 0.00 39.48 3.06
546 553 6.049149 AGATTTCATTGTGGACTACATACGG 58.951 40.000 0.00 0.00 39.48 4.02
547 554 5.408880 TTTCATTGTGGACTACATACGGA 57.591 39.130 0.00 0.00 39.48 4.69
548 555 4.649088 TCATTGTGGACTACATACGGAG 57.351 45.455 0.00 0.00 39.48 4.63
549 556 2.953466 TTGTGGACTACATACGGAGC 57.047 50.000 0.00 0.00 39.48 4.70
550 557 1.842052 TGTGGACTACATACGGAGCA 58.158 50.000 0.00 0.00 33.42 4.26
551 558 2.172679 TGTGGACTACATACGGAGCAA 58.827 47.619 0.00 0.00 33.42 3.91
552 559 2.563620 TGTGGACTACATACGGAGCAAA 59.436 45.455 0.00 0.00 33.42 3.68
553 560 3.187700 GTGGACTACATACGGAGCAAAG 58.812 50.000 0.00 0.00 0.00 2.77
554 561 2.829720 TGGACTACATACGGAGCAAAGT 59.170 45.455 0.00 0.00 0.00 2.66
555 562 3.187700 GGACTACATACGGAGCAAAGTG 58.812 50.000 0.00 0.00 0.00 3.16
556 563 3.119245 GGACTACATACGGAGCAAAGTGA 60.119 47.826 0.00 0.00 0.00 3.41
557 564 4.106197 GACTACATACGGAGCAAAGTGAG 58.894 47.826 0.00 0.00 0.00 3.51
558 565 3.510360 ACTACATACGGAGCAAAGTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
559 566 2.688507 ACATACGGAGCAAAGTGAGTG 58.311 47.619 0.00 0.00 0.00 3.51
560 567 2.299013 ACATACGGAGCAAAGTGAGTGA 59.701 45.455 0.00 0.00 0.00 3.41
561 568 3.244078 ACATACGGAGCAAAGTGAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
562 569 1.583054 ACGGAGCAAAGTGAGTGAAC 58.417 50.000 0.00 0.00 0.00 3.18
563 570 0.868406 CGGAGCAAAGTGAGTGAACC 59.132 55.000 0.00 0.00 0.00 3.62
564 571 1.541233 CGGAGCAAAGTGAGTGAACCT 60.541 52.381 0.00 0.00 0.00 3.50
565 572 2.288825 CGGAGCAAAGTGAGTGAACCTA 60.289 50.000 0.00 0.00 0.00 3.08
566 573 3.067833 GGAGCAAAGTGAGTGAACCTAC 58.932 50.000 0.00 0.00 0.00 3.18
567 574 3.494398 GGAGCAAAGTGAGTGAACCTACA 60.494 47.826 0.00 0.00 0.00 2.74
568 575 4.319177 GAGCAAAGTGAGTGAACCTACAT 58.681 43.478 0.00 0.00 0.00 2.29
569 576 4.718961 AGCAAAGTGAGTGAACCTACATT 58.281 39.130 0.00 0.00 0.00 2.71
570 577 4.757149 AGCAAAGTGAGTGAACCTACATTC 59.243 41.667 0.00 0.00 0.00 2.67
571 578 4.757149 GCAAAGTGAGTGAACCTACATTCT 59.243 41.667 0.00 0.00 0.00 2.40
572 579 5.932303 GCAAAGTGAGTGAACCTACATTCTA 59.068 40.000 0.00 0.00 0.00 2.10
573 580 6.426937 GCAAAGTGAGTGAACCTACATTCTAA 59.573 38.462 0.00 0.00 0.00 2.10
574 581 7.360438 GCAAAGTGAGTGAACCTACATTCTAAG 60.360 40.741 0.00 0.00 0.00 2.18
575 582 7.540474 AAGTGAGTGAACCTACATTCTAAGA 57.460 36.000 0.00 0.00 0.00 2.10
576 583 7.726033 AGTGAGTGAACCTACATTCTAAGAT 57.274 36.000 0.00 0.00 0.00 2.40
577 584 8.824756 AGTGAGTGAACCTACATTCTAAGATA 57.175 34.615 0.00 0.00 0.00 1.98
578 585 9.427821 AGTGAGTGAACCTACATTCTAAGATAT 57.572 33.333 0.00 0.00 0.00 1.63
579 586 9.469807 GTGAGTGAACCTACATTCTAAGATATG 57.530 37.037 0.00 0.00 0.00 1.78
580 587 9.201989 TGAGTGAACCTACATTCTAAGATATGT 57.798 33.333 0.00 0.00 38.46 2.29
581 588 9.685828 GAGTGAACCTACATTCTAAGATATGTC 57.314 37.037 0.00 0.00 36.46 3.06
582 589 9.427821 AGTGAACCTACATTCTAAGATATGTCT 57.572 33.333 0.00 0.00 36.46 3.41
611 618 7.297936 ACATCCGTATGTAGTTCATATTGGA 57.702 36.000 12.80 12.80 44.66 3.53
612 619 7.732025 ACATCCGTATGTAGTTCATATTGGAA 58.268 34.615 13.81 3.55 44.66 3.53
613 620 8.375506 ACATCCGTATGTAGTTCATATTGGAAT 58.624 33.333 13.81 6.58 44.66 3.01
614 621 8.873830 CATCCGTATGTAGTTCATATTGGAATC 58.126 37.037 13.81 0.00 43.20 2.52
615 622 8.190326 TCCGTATGTAGTTCATATTGGAATCT 57.810 34.615 9.72 0.00 40.31 2.40
616 623 8.647796 TCCGTATGTAGTTCATATTGGAATCTT 58.352 33.333 9.72 0.00 40.31 2.40
617 624 9.273016 CCGTATGTAGTTCATATTGGAATCTTT 57.727 33.333 5.56 0.00 40.54 2.52
625 632 8.907885 AGTTCATATTGGAATCTTTAGAAAGGC 58.092 33.333 2.29 0.00 36.67 4.35
626 633 8.907885 GTTCATATTGGAATCTTTAGAAAGGCT 58.092 33.333 2.29 0.00 36.67 4.58
627 634 9.479549 TTCATATTGGAATCTTTAGAAAGGCTT 57.520 29.630 0.00 0.00 36.67 4.35
641 648 8.897872 TTAGAAAGGCTTATAATTAGGAACGG 57.102 34.615 0.00 0.00 0.00 4.44
642 649 7.133133 AGAAAGGCTTATAATTAGGAACGGA 57.867 36.000 0.00 0.00 0.00 4.69
643 650 7.217906 AGAAAGGCTTATAATTAGGAACGGAG 58.782 38.462 0.00 0.00 0.00 4.63
644 651 5.485209 AGGCTTATAATTAGGAACGGAGG 57.515 43.478 0.00 0.00 0.00 4.30
645 652 5.152934 AGGCTTATAATTAGGAACGGAGGA 58.847 41.667 0.00 0.00 0.00 3.71
646 653 5.605488 AGGCTTATAATTAGGAACGGAGGAA 59.395 40.000 0.00 0.00 0.00 3.36
647 654 5.932883 GGCTTATAATTAGGAACGGAGGAAG 59.067 44.000 0.00 0.00 0.00 3.46
648 655 6.464039 GGCTTATAATTAGGAACGGAGGAAGT 60.464 42.308 0.00 0.00 0.00 3.01
672 679 0.527113 TAAAACTCGATGACGGCGGA 59.473 50.000 13.24 0.00 40.21 5.54
673 680 0.108329 AAAACTCGATGACGGCGGAT 60.108 50.000 13.24 1.89 40.21 4.18
674 681 0.806102 AAACTCGATGACGGCGGATG 60.806 55.000 13.24 0.00 40.21 3.51
715 2736 4.465632 TCCGTCAAGTAGTACATGCATT 57.534 40.909 0.00 0.00 0.00 3.56
716 2737 4.430007 TCCGTCAAGTAGTACATGCATTC 58.570 43.478 0.00 0.00 0.00 2.67
717 2738 3.555956 CCGTCAAGTAGTACATGCATTCC 59.444 47.826 0.00 0.00 0.00 3.01
718 2739 3.555956 CGTCAAGTAGTACATGCATTCCC 59.444 47.826 0.00 0.00 0.00 3.97
720 2741 2.872245 CAAGTAGTACATGCATTCCCCG 59.128 50.000 0.00 0.00 0.00 5.73
721 2742 1.202651 AGTAGTACATGCATTCCCCGC 60.203 52.381 0.00 0.00 0.00 6.13
722 2743 0.833949 TAGTACATGCATTCCCCGCA 59.166 50.000 0.00 0.00 44.94 5.69
723 2744 0.034574 AGTACATGCATTCCCCGCAA 60.035 50.000 0.00 0.00 43.84 4.85
724 2745 0.814457 GTACATGCATTCCCCGCAAA 59.186 50.000 0.00 0.00 43.84 3.68
725 2746 1.203523 GTACATGCATTCCCCGCAAAA 59.796 47.619 0.00 0.00 43.84 2.44
726 2747 0.683973 ACATGCATTCCCCGCAAAAA 59.316 45.000 0.00 0.00 43.84 1.94
777 2801 6.013379 AGGAAAGTGTCAAGAGTCCATGATAA 60.013 38.462 0.00 0.00 0.00 1.75
830 2857 3.597255 GGCTTGAAGTAGTACTTGTCCC 58.403 50.000 20.21 10.66 38.80 4.46
837 2864 8.834004 TTGAAGTAGTACTTGTCCCAGTATAT 57.166 34.615 20.21 0.00 38.80 0.86
838 2865 9.925545 TTGAAGTAGTACTTGTCCCAGTATATA 57.074 33.333 20.21 0.00 38.80 0.86
905 2949 5.134202 TGAGTTGCCGGATATGTATGTAG 57.866 43.478 5.05 0.00 0.00 2.74
927 3014 9.185680 TGTAGTATATATACATACACAGCCAGG 57.814 37.037 22.00 0.00 34.42 4.45
928 3015 9.186837 GTAGTATATATACATACACAGCCAGGT 57.813 37.037 22.00 2.16 34.42 4.00
930 3017 9.186837 AGTATATATACATACACAGCCAGGTAC 57.813 37.037 22.00 0.00 34.42 3.34
955 3042 5.941948 AGACCATAGTTTTGTAGCACAAC 57.058 39.130 1.85 0.00 37.90 3.32
1053 3166 5.163754 GGACTACTCATCCAAAATCAAACCG 60.164 44.000 0.00 0.00 36.15 4.44
1229 3363 2.828877 CACAACGTCCAGGTTAGACAA 58.171 47.619 0.00 0.00 33.70 3.18
1237 3371 2.838202 TCCAGGTTAGACAAGGTCATCC 59.162 50.000 0.00 0.00 34.60 3.51
1238 3372 2.418746 CCAGGTTAGACAAGGTCATCCG 60.419 54.545 0.00 0.00 39.05 4.18
1269 3403 1.676746 CCATTGATCAGCAGGACCAG 58.323 55.000 0.00 0.00 0.00 4.00
1303 3449 1.621672 GCTTGTGGAGGAGGAGGAGG 61.622 65.000 0.00 0.00 0.00 4.30
1304 3450 0.041833 CTTGTGGAGGAGGAGGAGGA 59.958 60.000 0.00 0.00 0.00 3.71
1305 3451 0.041833 TTGTGGAGGAGGAGGAGGAG 59.958 60.000 0.00 0.00 0.00 3.69
1306 3452 1.760480 GTGGAGGAGGAGGAGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
1307 3453 2.249125 TGGAGGAGGAGGAGGAGCA 61.249 63.158 0.00 0.00 0.00 4.26
1308 3454 1.457455 GGAGGAGGAGGAGGAGCAG 60.457 68.421 0.00 0.00 0.00 4.24
1309 3455 1.457455 GAGGAGGAGGAGGAGCAGG 60.457 68.421 0.00 0.00 0.00 4.85
1399 3551 2.173382 CGCGGCTAGTTGTTGCAC 59.827 61.111 0.00 0.00 0.00 4.57
1477 3629 1.040339 CGTGAAGGAGGAGGAGGAGG 61.040 65.000 0.00 0.00 0.00 4.30
1478 3630 0.336737 GTGAAGGAGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
1479 3631 0.633921 TGAAGGAGGAGGAGGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
1587 3739 3.843177 TTCTGGGAAAATTCATGGGGA 57.157 42.857 0.00 0.00 0.00 4.81
1621 3773 2.055633 TGCGGTGGCTTCGGAGATA 61.056 57.895 0.00 0.00 40.82 1.98
1701 3861 2.618053 ACATGTTGCTCGCCTTACTAC 58.382 47.619 0.00 0.00 0.00 2.73
1702 3862 2.028476 ACATGTTGCTCGCCTTACTACA 60.028 45.455 0.00 0.00 0.00 2.74
1704 3864 1.337447 TGTTGCTCGCCTTACTACACC 60.337 52.381 0.00 0.00 0.00 4.16
1706 3866 1.263356 TGCTCGCCTTACTACACCTT 58.737 50.000 0.00 0.00 0.00 3.50
1712 3872 4.563061 TCGCCTTACTACACCTTTTCTTC 58.437 43.478 0.00 0.00 0.00 2.87
1789 3949 6.913170 TGCTCAATCCTAAAATCTGAACAAC 58.087 36.000 0.00 0.00 0.00 3.32
1791 3951 7.231317 TGCTCAATCCTAAAATCTGAACAACTT 59.769 33.333 0.00 0.00 0.00 2.66
1792 3952 7.752686 GCTCAATCCTAAAATCTGAACAACTTC 59.247 37.037 0.00 0.00 0.00 3.01
1793 3953 8.110860 TCAATCCTAAAATCTGAACAACTTCC 57.889 34.615 0.00 0.00 0.00 3.46
1794 3954 7.944554 TCAATCCTAAAATCTGAACAACTTCCT 59.055 33.333 0.00 0.00 0.00 3.36
1795 3955 7.693969 ATCCTAAAATCTGAACAACTTCCTG 57.306 36.000 0.00 0.00 0.00 3.86
1797 3957 5.183904 CCTAAAATCTGAACAACTTCCTGGG 59.816 44.000 0.00 0.00 0.00 4.45
1798 3958 4.453480 AAATCTGAACAACTTCCTGGGA 57.547 40.909 0.00 0.00 0.00 4.37
1799 3959 2.930826 TCTGAACAACTTCCTGGGAC 57.069 50.000 0.00 0.00 0.00 4.46
1800 3960 1.420138 TCTGAACAACTTCCTGGGACC 59.580 52.381 0.00 0.00 0.00 4.46
1801 3961 1.142870 CTGAACAACTTCCTGGGACCA 59.857 52.381 0.00 0.00 0.00 4.02
1802 3962 1.133915 TGAACAACTTCCTGGGACCAC 60.134 52.381 0.00 0.00 0.00 4.16
1803 3963 0.923358 AACAACTTCCTGGGACCACA 59.077 50.000 0.00 0.00 0.00 4.17
1804 3964 0.923358 ACAACTTCCTGGGACCACAA 59.077 50.000 0.00 0.00 0.00 3.33
1805 3965 1.286553 ACAACTTCCTGGGACCACAAA 59.713 47.619 0.00 0.00 0.00 2.83
1806 3966 1.681264 CAACTTCCTGGGACCACAAAC 59.319 52.381 0.00 0.00 0.00 2.93
1807 3967 1.222567 ACTTCCTGGGACCACAAACT 58.777 50.000 0.00 0.00 0.00 2.66
1808 3968 1.569072 ACTTCCTGGGACCACAAACTT 59.431 47.619 0.00 0.00 0.00 2.66
1809 3969 2.230660 CTTCCTGGGACCACAAACTTC 58.769 52.381 0.00 0.00 0.00 3.01
1810 3970 0.476771 TCCTGGGACCACAAACTTCC 59.523 55.000 0.00 0.00 0.00 3.46
1811 3971 0.184933 CCTGGGACCACAAACTTCCA 59.815 55.000 0.00 0.00 0.00 3.53
1812 3972 1.318576 CTGGGACCACAAACTTCCAC 58.681 55.000 0.00 0.00 0.00 4.02
1813 3973 0.923358 TGGGACCACAAACTTCCACT 59.077 50.000 0.00 0.00 0.00 4.00
1814 3974 1.286553 TGGGACCACAAACTTCCACTT 59.713 47.619 0.00 0.00 0.00 3.16
1815 3975 1.954382 GGGACCACAAACTTCCACTTC 59.046 52.381 0.00 0.00 0.00 3.01
1816 3976 1.954382 GGACCACAAACTTCCACTTCC 59.046 52.381 0.00 0.00 0.00 3.46
1817 3977 2.422945 GGACCACAAACTTCCACTTCCT 60.423 50.000 0.00 0.00 0.00 3.36
1818 3978 3.181448 GGACCACAAACTTCCACTTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
1819 3979 4.457466 GACCACAAACTTCCACTTCCTAA 58.543 43.478 0.00 0.00 0.00 2.69
1820 3980 4.204799 ACCACAAACTTCCACTTCCTAAC 58.795 43.478 0.00 0.00 0.00 2.34
1821 3981 4.204012 CCACAAACTTCCACTTCCTAACA 58.796 43.478 0.00 0.00 0.00 2.41
1822 3982 4.275936 CCACAAACTTCCACTTCCTAACAG 59.724 45.833 0.00 0.00 0.00 3.16
1823 3983 5.123227 CACAAACTTCCACTTCCTAACAGA 58.877 41.667 0.00 0.00 0.00 3.41
1824 3984 5.588648 CACAAACTTCCACTTCCTAACAGAA 59.411 40.000 0.00 0.00 0.00 3.02
1825 3985 6.094881 CACAAACTTCCACTTCCTAACAGAAA 59.905 38.462 0.00 0.00 0.00 2.52
1826 3986 6.095021 ACAAACTTCCACTTCCTAACAGAAAC 59.905 38.462 0.00 0.00 0.00 2.78
1827 3987 5.367945 ACTTCCACTTCCTAACAGAAACA 57.632 39.130 0.00 0.00 0.00 2.83
1828 3988 5.123936 ACTTCCACTTCCTAACAGAAACAC 58.876 41.667 0.00 0.00 0.00 3.32
1829 3989 4.764050 TCCACTTCCTAACAGAAACACA 57.236 40.909 0.00 0.00 0.00 3.72
1830 3990 5.105567 TCCACTTCCTAACAGAAACACAA 57.894 39.130 0.00 0.00 0.00 3.33
1831 3991 4.879545 TCCACTTCCTAACAGAAACACAAC 59.120 41.667 0.00 0.00 0.00 3.32
1832 3992 4.638421 CCACTTCCTAACAGAAACACAACA 59.362 41.667 0.00 0.00 0.00 3.33
1833 3993 5.124776 CCACTTCCTAACAGAAACACAACAA 59.875 40.000 0.00 0.00 0.00 2.83
1834 3994 6.349777 CCACTTCCTAACAGAAACACAACAAA 60.350 38.462 0.00 0.00 0.00 2.83
1835 3995 7.087639 CACTTCCTAACAGAAACACAACAAAA 58.912 34.615 0.00 0.00 0.00 2.44
1836 3996 7.061789 CACTTCCTAACAGAAACACAACAAAAC 59.938 37.037 0.00 0.00 0.00 2.43
1837 3997 6.576662 TCCTAACAGAAACACAACAAAACA 57.423 33.333 0.00 0.00 0.00 2.83
1838 3998 6.982852 TCCTAACAGAAACACAACAAAACAA 58.017 32.000 0.00 0.00 0.00 2.83
1839 3999 7.607250 TCCTAACAGAAACACAACAAAACAAT 58.393 30.769 0.00 0.00 0.00 2.71
1840 4000 8.740906 TCCTAACAGAAACACAACAAAACAATA 58.259 29.630 0.00 0.00 0.00 1.90
1887 4047 2.868583 CTGATTTACCTGACCATGCTCG 59.131 50.000 0.00 0.00 0.00 5.03
1894 4054 0.935898 CTGACCATGCTCGCAATCTC 59.064 55.000 0.00 0.00 0.00 2.75
1909 4069 7.956403 GCTCGCAATCTCTATCATTTATTTGAG 59.044 37.037 0.00 0.00 0.00 3.02
1913 4073 8.226448 GCAATCTCTATCATTTATTTGAGACCG 58.774 37.037 0.00 0.00 32.46 4.79
1916 4076 5.838529 TCTATCATTTATTTGAGACCGCGA 58.161 37.500 8.23 0.00 0.00 5.87
1917 4077 6.455647 TCTATCATTTATTTGAGACCGCGAT 58.544 36.000 8.23 0.00 0.00 4.58
1918 4078 7.599171 TCTATCATTTATTTGAGACCGCGATA 58.401 34.615 8.23 0.00 0.00 2.92
1942 4102 2.273370 TAGAGTGGCGACAACGATTC 57.727 50.000 0.00 0.00 46.06 2.52
1957 4117 7.480229 CGACAACGATTCAGCAAACAATAATAA 59.520 33.333 0.00 0.00 42.66 1.40
1989 4149 9.280174 CCAATTTCCTTTCTACTGTACAAGTAA 57.720 33.333 0.00 0.00 40.92 2.24
1996 4156 7.172532 CCTTTCTACTGTACAAGTAAACATGCA 59.827 37.037 0.00 0.00 40.92 3.96
1997 4157 8.615878 TTTCTACTGTACAAGTAAACATGCAT 57.384 30.769 0.00 0.00 40.92 3.96
1998 4158 7.595311 TCTACTGTACAAGTAAACATGCATG 57.405 36.000 25.09 25.09 40.92 4.06
1999 4159 5.046910 ACTGTACAAGTAAACATGCATGC 57.953 39.130 26.53 11.82 37.36 4.06
2040 4200 7.713942 ACTTCGTTTCTCCTTGTGTAAGTAAAT 59.286 33.333 0.00 0.00 31.80 1.40
2436 4606 7.916552 ACATTTGTAGTCCATTACGATTAAGC 58.083 34.615 0.00 0.00 0.00 3.09
2572 4748 4.142622 TGTTGACTTTGAAGTTGCACTCAG 60.143 41.667 0.00 0.00 39.88 3.35
2609 4785 4.933330 ACAAATATAGCGTGTCGATCACT 58.067 39.130 13.65 2.09 44.16 3.41
2621 4797 0.243907 CGATCACTCTTGACCACCGT 59.756 55.000 0.00 0.00 33.38 4.83
2723 4899 2.158900 CCAGGCTACTATCTTGGGTGTG 60.159 54.545 0.00 0.00 0.00 3.82
2762 4938 2.564062 CTGGCCTTTCAAATGTGGATGT 59.436 45.455 3.32 0.00 0.00 3.06
2777 4953 1.067565 GGATGTCGAGTTGTCTGCTCA 60.068 52.381 0.00 0.00 33.45 4.26
2826 5002 3.472283 TTCGTACCACTTACAGGCAAA 57.528 42.857 0.00 0.00 0.00 3.68
3116 5292 2.613977 CCTCTTCCTCAGTTGATTGCGT 60.614 50.000 0.00 0.00 0.00 5.24
3146 5322 9.935241 CATGTAGTAAGATGGCTATGTAAGATT 57.065 33.333 0.00 0.00 0.00 2.40
3301 5483 5.874810 TGATCCGATCGATTGTTTTTCTTCT 59.125 36.000 18.66 0.00 0.00 2.85
3345 5527 5.168526 TGCAAAATCGTTATATGTCAGCC 57.831 39.130 0.00 0.00 0.00 4.85
3828 6041 1.238439 CGTGGTTGCCTTGTCATTCT 58.762 50.000 0.00 0.00 0.00 2.40
3901 6115 1.585006 GAGACGCGGAAGGTTGAGA 59.415 57.895 12.47 0.00 0.00 3.27
3939 6153 3.256383 CAGTGAGGCATGAAAACCAATGA 59.744 43.478 0.00 0.00 0.00 2.57
4023 6237 6.721571 TTTTTAACGATAACAGGAGAGCTG 57.278 37.500 0.00 0.00 0.00 4.24
4024 6238 5.401531 TTTAACGATAACAGGAGAGCTGT 57.598 39.130 0.00 0.00 36.49 4.40
4038 6252 8.147058 ACAGGAGAGCTGTTATATTCATTGTAG 58.853 37.037 0.00 0.00 0.00 2.74
4053 6267 4.768448 TCATTGTAGGAAGAAGACGGTACA 59.232 41.667 0.00 0.00 0.00 2.90
4069 6283 1.274447 GTACAAGGACCCGTACTGCTT 59.726 52.381 12.53 0.00 36.02 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.802051 CATGGGCCGGACTGGTGG 62.802 72.222 7.57 0.00 41.21 4.61
8 9 3.976701 GACATGGGCCGGACTGGTG 62.977 68.421 7.57 6.40 41.21 4.17
9 10 3.717294 GACATGGGCCGGACTGGT 61.717 66.667 7.57 2.23 41.21 4.00
10 11 3.716195 TGACATGGGCCGGACTGG 61.716 66.667 7.57 0.00 42.50 4.00
11 12 2.436646 GTGACATGGGCCGGACTG 60.437 66.667 7.57 0.00 0.00 3.51
12 13 0.980754 TATGTGACATGGGCCGGACT 60.981 55.000 7.57 0.00 0.00 3.85
13 14 0.532862 CTATGTGACATGGGCCGGAC 60.533 60.000 5.05 0.00 0.00 4.79
14 15 1.829456 CTATGTGACATGGGCCGGA 59.171 57.895 5.05 0.00 0.00 5.14
15 16 1.893808 GCTATGTGACATGGGCCGG 60.894 63.158 8.61 0.00 0.00 6.13
16 17 0.882042 GAGCTATGTGACATGGGCCG 60.882 60.000 8.61 0.00 0.00 6.13
17 18 0.882042 CGAGCTATGTGACATGGGCC 60.882 60.000 8.61 0.00 0.00 5.80
18 19 0.882042 CCGAGCTATGTGACATGGGC 60.882 60.000 8.61 12.15 0.00 5.36
19 20 0.752658 TCCGAGCTATGTGACATGGG 59.247 55.000 8.61 2.28 0.00 4.00
20 21 1.858091 GTCCGAGCTATGTGACATGG 58.142 55.000 8.61 6.43 0.00 3.66
21 22 1.481240 CGTCCGAGCTATGTGACATG 58.519 55.000 8.61 0.00 0.00 3.21
22 23 0.249073 GCGTCCGAGCTATGTGACAT 60.249 55.000 2.65 2.65 0.00 3.06
23 24 1.138883 GCGTCCGAGCTATGTGACA 59.861 57.895 0.00 0.00 0.00 3.58
24 25 1.589196 GGCGTCCGAGCTATGTGAC 60.589 63.158 0.00 0.00 37.29 3.67
25 26 2.782222 GGGCGTCCGAGCTATGTGA 61.782 63.158 0.00 0.00 37.29 3.58
26 27 2.279517 GGGCGTCCGAGCTATGTG 60.280 66.667 0.00 0.00 37.29 3.21
27 28 3.537874 GGGGCGTCCGAGCTATGT 61.538 66.667 0.00 0.00 37.29 2.29
28 29 4.301027 GGGGGCGTCCGAGCTATG 62.301 72.222 0.00 0.00 37.29 2.23
29 30 2.651841 TTAGGGGGCGTCCGAGCTAT 62.652 60.000 0.00 0.00 37.29 2.97
30 31 2.651841 ATTAGGGGGCGTCCGAGCTA 62.652 60.000 0.00 0.00 37.29 3.32
31 32 4.772231 TTAGGGGGCGTCCGAGCT 62.772 66.667 0.00 0.00 37.29 4.09
32 33 3.516866 GATTAGGGGGCGTCCGAGC 62.517 68.421 0.00 0.00 36.01 5.03
33 34 2.735237 GATTAGGGGGCGTCCGAG 59.265 66.667 0.00 0.00 36.01 4.63
34 35 2.841044 GGATTAGGGGGCGTCCGA 60.841 66.667 0.00 0.00 36.01 4.55
35 36 3.158648 TGGATTAGGGGGCGTCCG 61.159 66.667 0.00 0.00 36.01 4.79
36 37 2.819284 CCTGGATTAGGGGGCGTCC 61.819 68.421 0.00 0.00 43.33 4.79
37 38 2.829592 CCTGGATTAGGGGGCGTC 59.170 66.667 0.00 0.00 43.33 5.19
44 45 2.091055 TCTGAGGGAGTCCTGGATTAGG 60.091 54.545 9.58 0.00 45.05 2.69
45 46 2.962421 GTCTGAGGGAGTCCTGGATTAG 59.038 54.545 9.58 0.00 45.05 1.73
46 47 2.314852 TGTCTGAGGGAGTCCTGGATTA 59.685 50.000 9.58 0.00 45.05 1.75
47 48 1.079490 TGTCTGAGGGAGTCCTGGATT 59.921 52.381 9.58 0.00 45.05 3.01
48 49 0.712979 TGTCTGAGGGAGTCCTGGAT 59.287 55.000 9.58 0.00 45.05 3.41
49 50 0.251832 GTGTCTGAGGGAGTCCTGGA 60.252 60.000 9.58 0.00 45.05 3.86
50 51 1.261238 GGTGTCTGAGGGAGTCCTGG 61.261 65.000 9.58 0.00 45.05 4.45
51 52 1.261238 GGGTGTCTGAGGGAGTCCTG 61.261 65.000 9.58 0.00 45.05 3.86
53 54 0.618968 ATGGGTGTCTGAGGGAGTCC 60.619 60.000 0.00 0.00 0.00 3.85
54 55 0.827368 GATGGGTGTCTGAGGGAGTC 59.173 60.000 0.00 0.00 0.00 3.36
55 56 0.972983 CGATGGGTGTCTGAGGGAGT 60.973 60.000 0.00 0.00 0.00 3.85
56 57 1.680522 CCGATGGGTGTCTGAGGGAG 61.681 65.000 0.00 0.00 0.00 4.30
57 58 1.685765 CCGATGGGTGTCTGAGGGA 60.686 63.158 0.00 0.00 0.00 4.20
58 59 2.735772 CCCGATGGGTGTCTGAGGG 61.736 68.421 0.00 0.00 38.25 4.30
59 60 2.903357 CCCGATGGGTGTCTGAGG 59.097 66.667 0.00 0.00 38.25 3.86
103 104 3.680786 GCCCCTTTCACGGCCAAC 61.681 66.667 2.24 0.00 39.39 3.77
107 108 3.140814 GATGGCCCCTTTCACGGC 61.141 66.667 0.00 0.00 44.92 5.68
148 149 1.139734 AGCTACGACGGCATGACTG 59.860 57.895 0.00 0.00 0.00 3.51
180 181 3.326836 TCATCTACAACGGCATGACAA 57.673 42.857 0.00 0.00 0.00 3.18
222 223 0.519999 ACGACAAGACGTACGCGATC 60.520 55.000 15.93 5.65 44.72 3.69
228 229 5.621422 TGACAGTATAACGACAAGACGTAC 58.379 41.667 0.00 0.00 45.83 3.67
231 232 5.060569 CCTTTGACAGTATAACGACAAGACG 59.939 44.000 0.00 0.00 39.31 4.18
248 249 1.338200 ACATCTCCAGCGTCCTTTGAC 60.338 52.381 0.00 0.00 38.18 3.18
258 259 0.247736 ACAAGACGGACATCTCCAGC 59.752 55.000 0.00 0.00 36.12 4.85
274 275 2.113774 CTGCTGCCCTGTCCACAA 59.886 61.111 0.00 0.00 0.00 3.33
298 299 1.937223 AGCAACGATTTCGACAACACA 59.063 42.857 7.01 0.00 43.02 3.72
305 306 2.066262 GGTCTTCAGCAACGATTTCGA 58.934 47.619 7.01 0.00 43.02 3.71
312 313 0.588252 CACCAAGGTCTTCAGCAACG 59.412 55.000 0.00 0.00 0.00 4.10
315 316 1.699083 TCATCACCAAGGTCTTCAGCA 59.301 47.619 0.00 0.00 0.00 4.41
317 318 4.013267 ACTTCATCACCAAGGTCTTCAG 57.987 45.455 0.00 0.00 0.00 3.02
350 351 5.741982 TCATTGTCGACACGTCACTATAATG 59.258 40.000 19.90 14.68 0.00 1.90
354 355 3.842732 TCATTGTCGACACGTCACTAT 57.157 42.857 19.90 4.07 0.00 2.12
377 378 1.412710 GAGGGATGCCTTCATACGACA 59.587 52.381 7.42 0.00 34.23 4.35
380 381 0.946221 GCGAGGGATGCCTTCATACG 60.946 60.000 7.42 7.11 34.23 3.06
382 383 0.394192 CTGCGAGGGATGCCTTCATA 59.606 55.000 7.42 0.00 31.96 2.15
490 497 9.819267 AAGACTTATATTTAAGAACGAAGGGAG 57.181 33.333 9.58 0.00 38.56 4.30
511 518 9.750125 GTCCACAATGAAATCTTTAAAAAGACT 57.250 29.630 7.29 0.00 46.80 3.24
512 519 9.750125 AGTCCACAATGAAATCTTTAAAAAGAC 57.250 29.630 7.29 0.00 46.80 3.01
519 526 9.093970 CGTATGTAGTCCACAATGAAATCTTTA 57.906 33.333 0.00 0.00 41.55 1.85
520 527 7.065803 CCGTATGTAGTCCACAATGAAATCTTT 59.934 37.037 0.00 0.00 41.55 2.52
521 528 6.538742 CCGTATGTAGTCCACAATGAAATCTT 59.461 38.462 0.00 0.00 41.55 2.40
522 529 6.049149 CCGTATGTAGTCCACAATGAAATCT 58.951 40.000 0.00 0.00 41.55 2.40
523 530 6.046593 TCCGTATGTAGTCCACAATGAAATC 58.953 40.000 0.00 0.00 41.55 2.17
524 531 5.984725 TCCGTATGTAGTCCACAATGAAAT 58.015 37.500 0.00 0.00 41.55 2.17
525 532 5.408880 TCCGTATGTAGTCCACAATGAAA 57.591 39.130 0.00 0.00 41.55 2.69
526 533 4.679639 GCTCCGTATGTAGTCCACAATGAA 60.680 45.833 0.00 0.00 41.55 2.57
527 534 3.181479 GCTCCGTATGTAGTCCACAATGA 60.181 47.826 0.00 0.00 41.55 2.57
528 535 3.123804 GCTCCGTATGTAGTCCACAATG 58.876 50.000 0.00 0.00 41.55 2.82
529 536 2.764010 TGCTCCGTATGTAGTCCACAAT 59.236 45.455 0.00 0.00 41.55 2.71
530 537 2.172679 TGCTCCGTATGTAGTCCACAA 58.827 47.619 0.00 0.00 41.55 3.33
531 538 1.842052 TGCTCCGTATGTAGTCCACA 58.158 50.000 0.00 0.00 42.69 4.17
532 539 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
533 540 2.829720 ACTTTGCTCCGTATGTAGTCCA 59.170 45.455 0.00 0.00 0.00 4.02
534 541 3.119245 TCACTTTGCTCCGTATGTAGTCC 60.119 47.826 0.00 0.00 0.00 3.85
535 542 4.106029 TCACTTTGCTCCGTATGTAGTC 57.894 45.455 0.00 0.00 0.00 2.59
536 543 3.510360 ACTCACTTTGCTCCGTATGTAGT 59.490 43.478 0.00 0.00 0.00 2.73
537 544 3.859961 CACTCACTTTGCTCCGTATGTAG 59.140 47.826 0.00 0.00 0.00 2.74
538 545 3.508402 TCACTCACTTTGCTCCGTATGTA 59.492 43.478 0.00 0.00 0.00 2.29
539 546 2.299013 TCACTCACTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
540 547 2.959516 TCACTCACTTTGCTCCGTATG 58.040 47.619 0.00 0.00 0.00 2.39
541 548 3.326747 GTTCACTCACTTTGCTCCGTAT 58.673 45.455 0.00 0.00 0.00 3.06
542 549 2.547218 GGTTCACTCACTTTGCTCCGTA 60.547 50.000 0.00 0.00 0.00 4.02
543 550 1.583054 GTTCACTCACTTTGCTCCGT 58.417 50.000 0.00 0.00 0.00 4.69
544 551 0.868406 GGTTCACTCACTTTGCTCCG 59.132 55.000 0.00 0.00 0.00 4.63
545 552 2.262423 AGGTTCACTCACTTTGCTCC 57.738 50.000 0.00 0.00 0.00 4.70
546 553 3.728845 TGTAGGTTCACTCACTTTGCTC 58.271 45.455 0.00 0.00 0.00 4.26
547 554 3.838244 TGTAGGTTCACTCACTTTGCT 57.162 42.857 0.00 0.00 0.00 3.91
548 555 4.757149 AGAATGTAGGTTCACTCACTTTGC 59.243 41.667 0.00 0.00 0.00 3.68
549 556 7.872993 TCTTAGAATGTAGGTTCACTCACTTTG 59.127 37.037 0.00 0.00 0.00 2.77
550 557 7.963532 TCTTAGAATGTAGGTTCACTCACTTT 58.036 34.615 0.00 0.00 0.00 2.66
551 558 7.540474 TCTTAGAATGTAGGTTCACTCACTT 57.460 36.000 0.00 0.00 0.00 3.16
552 559 7.726033 ATCTTAGAATGTAGGTTCACTCACT 57.274 36.000 0.00 0.00 0.00 3.41
553 560 9.469807 CATATCTTAGAATGTAGGTTCACTCAC 57.530 37.037 0.00 0.00 0.00 3.51
554 561 9.201989 ACATATCTTAGAATGTAGGTTCACTCA 57.798 33.333 7.79 0.00 34.61 3.41
555 562 9.685828 GACATATCTTAGAATGTAGGTTCACTC 57.314 37.037 9.00 0.00 36.48 3.51
556 563 9.427821 AGACATATCTTAGAATGTAGGTTCACT 57.572 33.333 9.00 0.00 36.48 3.41
578 585 9.729281 TGAACTACATACGGATGTATATAGACA 57.271 33.333 20.64 12.87 45.42 3.41
585 592 9.031537 TCCAATATGAACTACATACGGATGTAT 57.968 33.333 20.64 7.28 45.42 2.29
586 593 8.411991 TCCAATATGAACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
588 595 8.777865 ATTCCAATATGAACTACATACGGATG 57.222 34.615 5.94 5.94 43.12 3.51
589 596 8.816894 AGATTCCAATATGAACTACATACGGAT 58.183 33.333 0.00 0.00 43.12 4.18
590 597 8.190326 AGATTCCAATATGAACTACATACGGA 57.810 34.615 0.00 0.00 43.12 4.69
591 598 8.833231 AAGATTCCAATATGAACTACATACGG 57.167 34.615 0.00 0.00 43.12 4.02
599 606 8.907885 GCCTTTCTAAAGATTCCAATATGAACT 58.092 33.333 4.01 0.00 38.28 3.01
600 607 8.907885 AGCCTTTCTAAAGATTCCAATATGAAC 58.092 33.333 4.01 0.00 38.28 3.18
601 608 9.479549 AAGCCTTTCTAAAGATTCCAATATGAA 57.520 29.630 4.01 0.00 38.28 2.57
615 622 9.333724 CCGTTCCTAATTATAAGCCTTTCTAAA 57.666 33.333 0.00 0.00 0.00 1.85
616 623 8.707449 TCCGTTCCTAATTATAAGCCTTTCTAA 58.293 33.333 0.00 0.00 0.00 2.10
617 624 8.253867 TCCGTTCCTAATTATAAGCCTTTCTA 57.746 34.615 0.00 0.00 0.00 2.10
618 625 7.133133 TCCGTTCCTAATTATAAGCCTTTCT 57.867 36.000 0.00 0.00 0.00 2.52
619 626 6.427242 CCTCCGTTCCTAATTATAAGCCTTTC 59.573 42.308 0.00 0.00 0.00 2.62
620 627 6.100714 TCCTCCGTTCCTAATTATAAGCCTTT 59.899 38.462 0.00 0.00 0.00 3.11
621 628 5.605488 TCCTCCGTTCCTAATTATAAGCCTT 59.395 40.000 0.00 0.00 0.00 4.35
622 629 5.152934 TCCTCCGTTCCTAATTATAAGCCT 58.847 41.667 0.00 0.00 0.00 4.58
623 630 5.479124 TCCTCCGTTCCTAATTATAAGCC 57.521 43.478 0.00 0.00 0.00 4.35
624 631 6.522946 ACTTCCTCCGTTCCTAATTATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
625 632 9.075678 TCTACTTCCTCCGTTCCTAATTATAAG 57.924 37.037 0.00 0.00 0.00 1.73
626 633 9.597681 ATCTACTTCCTCCGTTCCTAATTATAA 57.402 33.333 0.00 0.00 0.00 0.98
627 634 9.597681 AATCTACTTCCTCCGTTCCTAATTATA 57.402 33.333 0.00 0.00 0.00 0.98
628 635 8.493787 AATCTACTTCCTCCGTTCCTAATTAT 57.506 34.615 0.00 0.00 0.00 1.28
629 636 7.909485 AATCTACTTCCTCCGTTCCTAATTA 57.091 36.000 0.00 0.00 0.00 1.40
630 637 6.809976 AATCTACTTCCTCCGTTCCTAATT 57.190 37.500 0.00 0.00 0.00 1.40
631 638 7.909485 TTAATCTACTTCCTCCGTTCCTAAT 57.091 36.000 0.00 0.00 0.00 1.73
632 639 7.722949 TTTAATCTACTTCCTCCGTTCCTAA 57.277 36.000 0.00 0.00 0.00 2.69
633 640 7.398332 AGTTTTAATCTACTTCCTCCGTTCCTA 59.602 37.037 0.00 0.00 0.00 2.94
634 641 6.212993 AGTTTTAATCTACTTCCTCCGTTCCT 59.787 38.462 0.00 0.00 0.00 3.36
635 642 6.404708 AGTTTTAATCTACTTCCTCCGTTCC 58.595 40.000 0.00 0.00 0.00 3.62
636 643 6.253083 CGAGTTTTAATCTACTTCCTCCGTTC 59.747 42.308 0.00 0.00 0.00 3.95
637 644 6.071728 TCGAGTTTTAATCTACTTCCTCCGTT 60.072 38.462 0.00 0.00 0.00 4.44
638 645 5.416952 TCGAGTTTTAATCTACTTCCTCCGT 59.583 40.000 0.00 0.00 0.00 4.69
639 646 5.888105 TCGAGTTTTAATCTACTTCCTCCG 58.112 41.667 0.00 0.00 0.00 4.63
640 647 7.435784 GTCATCGAGTTTTAATCTACTTCCTCC 59.564 40.741 0.00 0.00 0.00 4.30
641 648 7.166142 CGTCATCGAGTTTTAATCTACTTCCTC 59.834 40.741 0.00 0.00 39.71 3.71
642 649 6.973474 CGTCATCGAGTTTTAATCTACTTCCT 59.027 38.462 0.00 0.00 39.71 3.36
643 650 6.198591 CCGTCATCGAGTTTTAATCTACTTCC 59.801 42.308 0.00 0.00 39.71 3.46
644 651 6.291690 GCCGTCATCGAGTTTTAATCTACTTC 60.292 42.308 0.00 0.00 39.71 3.01
645 652 5.519206 GCCGTCATCGAGTTTTAATCTACTT 59.481 40.000 0.00 0.00 39.71 2.24
646 653 5.041940 GCCGTCATCGAGTTTTAATCTACT 58.958 41.667 0.00 0.00 39.71 2.57
647 654 4.085721 CGCCGTCATCGAGTTTTAATCTAC 60.086 45.833 0.00 0.00 39.71 2.59
648 655 4.039703 CGCCGTCATCGAGTTTTAATCTA 58.960 43.478 0.00 0.00 39.71 1.98
672 679 1.476471 GCAACCTGATCAGCTAGCCAT 60.476 52.381 17.76 3.44 0.00 4.40
673 680 0.107508 GCAACCTGATCAGCTAGCCA 60.108 55.000 17.76 0.64 0.00 4.75
674 681 0.179936 AGCAACCTGATCAGCTAGCC 59.820 55.000 17.76 4.11 35.19 3.93
730 2751 7.172342 TCCTAACCATGCATGTACTACTTTTT 58.828 34.615 24.58 6.49 0.00 1.94
731 2752 6.717289 TCCTAACCATGCATGTACTACTTTT 58.283 36.000 24.58 7.40 0.00 2.27
732 2753 6.308015 TCCTAACCATGCATGTACTACTTT 57.692 37.500 24.58 8.62 0.00 2.66
733 2754 5.950544 TCCTAACCATGCATGTACTACTT 57.049 39.130 24.58 8.59 0.00 2.24
734 2755 5.950544 TTCCTAACCATGCATGTACTACT 57.049 39.130 24.58 5.48 0.00 2.57
735 2756 6.037172 CACTTTCCTAACCATGCATGTACTAC 59.963 42.308 24.58 0.00 0.00 2.73
736 2757 6.112734 CACTTTCCTAACCATGCATGTACTA 58.887 40.000 24.58 11.69 0.00 1.82
737 2758 4.943705 CACTTTCCTAACCATGCATGTACT 59.056 41.667 24.58 11.18 0.00 2.73
738 2759 4.700213 ACACTTTCCTAACCATGCATGTAC 59.300 41.667 24.58 0.00 0.00 2.90
739 2760 4.917385 ACACTTTCCTAACCATGCATGTA 58.083 39.130 24.58 10.96 0.00 2.29
740 2761 3.758554 GACACTTTCCTAACCATGCATGT 59.241 43.478 24.58 10.36 0.00 3.21
741 2762 3.758023 TGACACTTTCCTAACCATGCATG 59.242 43.478 20.19 20.19 0.00 4.06
742 2763 4.032960 TGACACTTTCCTAACCATGCAT 57.967 40.909 0.00 0.00 0.00 3.96
743 2764 3.500448 TGACACTTTCCTAACCATGCA 57.500 42.857 0.00 0.00 0.00 3.96
744 2765 4.072131 TCTTGACACTTTCCTAACCATGC 58.928 43.478 0.00 0.00 0.00 4.06
745 2766 5.308825 ACTCTTGACACTTTCCTAACCATG 58.691 41.667 0.00 0.00 0.00 3.66
777 2801 6.183347 ACCTGATGAGCTAGCAAAACTAATT 58.817 36.000 18.83 0.00 0.00 1.40
830 2857 3.711132 CACGCGCGTACGTATATATACTG 59.289 47.826 37.24 14.21 46.34 2.74
837 2864 0.232046 CCTACACGCGCGTACGTATA 59.768 55.000 37.24 20.14 46.34 1.47
838 2865 1.010797 CCTACACGCGCGTACGTAT 60.011 57.895 37.24 20.10 46.34 3.06
839 2866 2.291508 GACCTACACGCGCGTACGTA 62.292 60.000 37.24 30.16 46.34 3.57
905 2949 8.127327 CGTACCTGGCTGTGTATGTATATATAC 58.873 40.741 14.86 14.86 34.78 1.47
927 3014 6.252228 GTGCTACAAAACTATGGTCTACGTAC 59.748 42.308 0.00 0.00 0.00 3.67
928 3015 6.072008 TGTGCTACAAAACTATGGTCTACGTA 60.072 38.462 0.00 0.00 0.00 3.57
930 3017 5.165676 TGTGCTACAAAACTATGGTCTACG 58.834 41.667 0.00 0.00 0.00 3.51
955 3042 2.484264 GTGTTTCAGATCTTTCCCCACG 59.516 50.000 0.00 0.00 0.00 4.94
1229 3363 1.408822 GGAATTCCTTGCGGATGACCT 60.409 52.381 17.73 0.00 39.58 3.85
1237 3371 1.473258 TCAATGGGGAATTCCTTGCG 58.527 50.000 23.63 9.34 35.95 4.85
1238 3372 3.033184 TGATCAATGGGGAATTCCTTGC 58.967 45.455 23.63 7.53 35.95 4.01
1303 3449 0.462759 CCCGTGGAAAGATCCTGCTC 60.463 60.000 0.00 0.00 46.70 4.26
1304 3450 0.909610 TCCCGTGGAAAGATCCTGCT 60.910 55.000 0.00 0.00 46.70 4.24
1305 3451 0.181350 ATCCCGTGGAAAGATCCTGC 59.819 55.000 0.00 0.00 46.70 4.85
1306 3452 2.717639 AATCCCGTGGAAAGATCCTG 57.282 50.000 0.00 0.00 46.70 3.86
1307 3453 2.846827 AGAAATCCCGTGGAAAGATCCT 59.153 45.455 0.00 0.00 46.70 3.24
1308 3454 3.283259 AGAAATCCCGTGGAAAGATCC 57.717 47.619 0.00 0.00 46.76 3.36
1309 3455 6.944234 ATTTAGAAATCCCGTGGAAAGATC 57.056 37.500 0.00 0.00 34.34 2.75
1399 3551 0.107993 TCCTGCGCATCCTCTTCTTG 60.108 55.000 12.24 0.00 0.00 3.02
1465 3617 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1587 3739 1.600916 GCACCTTCCGTCCTTGCTT 60.601 57.895 0.00 0.00 0.00 3.91
1669 3829 5.177511 GCGAGCAACATGTATGTATGTATGT 59.822 40.000 0.00 0.00 40.24 2.29
1670 3830 5.389830 GGCGAGCAACATGTATGTATGTATG 60.390 44.000 0.00 0.00 40.24 2.39
1671 3831 4.690748 GGCGAGCAACATGTATGTATGTAT 59.309 41.667 0.00 0.00 40.24 2.29
1672 3832 4.055360 GGCGAGCAACATGTATGTATGTA 58.945 43.478 0.00 0.00 40.24 2.29
1673 3833 2.872245 GGCGAGCAACATGTATGTATGT 59.128 45.455 0.00 0.00 42.82 2.29
1674 3834 3.133691 AGGCGAGCAACATGTATGTATG 58.866 45.455 0.00 0.00 40.80 2.39
1675 3835 3.475566 AGGCGAGCAACATGTATGTAT 57.524 42.857 0.00 0.00 40.80 2.29
1676 3836 2.979814 AGGCGAGCAACATGTATGTA 57.020 45.000 0.00 0.00 40.80 2.29
1677 3837 2.113860 AAGGCGAGCAACATGTATGT 57.886 45.000 0.00 0.00 44.20 2.29
1678 3838 3.198068 AGTAAGGCGAGCAACATGTATG 58.802 45.455 0.00 1.04 0.00 2.39
1679 3839 3.543680 AGTAAGGCGAGCAACATGTAT 57.456 42.857 0.00 0.00 0.00 2.29
1680 3840 3.193903 TGTAGTAAGGCGAGCAACATGTA 59.806 43.478 0.00 0.00 0.00 2.29
1681 3841 2.028476 TGTAGTAAGGCGAGCAACATGT 60.028 45.455 0.00 0.00 0.00 3.21
1682 3842 2.348666 GTGTAGTAAGGCGAGCAACATG 59.651 50.000 0.00 0.00 0.00 3.21
1683 3843 2.618053 GTGTAGTAAGGCGAGCAACAT 58.382 47.619 0.00 0.00 0.00 2.71
1684 3844 1.337447 GGTGTAGTAAGGCGAGCAACA 60.337 52.381 0.00 0.00 0.00 3.33
1789 3949 2.230660 GAAGTTTGTGGTCCCAGGAAG 58.769 52.381 0.00 0.00 0.00 3.46
1791 3951 0.476771 GGAAGTTTGTGGTCCCAGGA 59.523 55.000 0.00 0.00 0.00 3.86
1792 3952 0.184933 TGGAAGTTTGTGGTCCCAGG 59.815 55.000 0.00 0.00 0.00 4.45
1793 3953 1.133792 AGTGGAAGTTTGTGGTCCCAG 60.134 52.381 0.00 0.00 0.00 4.45
1794 3954 0.923358 AGTGGAAGTTTGTGGTCCCA 59.077 50.000 0.00 0.00 0.00 4.37
1795 3955 1.954382 GAAGTGGAAGTTTGTGGTCCC 59.046 52.381 0.00 0.00 0.00 4.46
1797 3957 2.932261 AGGAAGTGGAAGTTTGTGGTC 58.068 47.619 0.00 0.00 0.00 4.02
1798 3958 4.204799 GTTAGGAAGTGGAAGTTTGTGGT 58.795 43.478 0.00 0.00 0.00 4.16
1799 3959 4.204012 TGTTAGGAAGTGGAAGTTTGTGG 58.796 43.478 0.00 0.00 0.00 4.17
1800 3960 5.123227 TCTGTTAGGAAGTGGAAGTTTGTG 58.877 41.667 0.00 0.00 0.00 3.33
1801 3961 5.367945 TCTGTTAGGAAGTGGAAGTTTGT 57.632 39.130 0.00 0.00 0.00 2.83
1802 3962 6.094881 TGTTTCTGTTAGGAAGTGGAAGTTTG 59.905 38.462 0.00 0.00 0.00 2.93
1803 3963 6.095021 GTGTTTCTGTTAGGAAGTGGAAGTTT 59.905 38.462 0.00 0.00 0.00 2.66
1804 3964 5.589050 GTGTTTCTGTTAGGAAGTGGAAGTT 59.411 40.000 0.00 0.00 0.00 2.66
1805 3965 5.123936 GTGTTTCTGTTAGGAAGTGGAAGT 58.876 41.667 0.00 0.00 0.00 3.01
1806 3966 5.123227 TGTGTTTCTGTTAGGAAGTGGAAG 58.877 41.667 0.00 0.00 0.00 3.46
1807 3967 5.105567 TGTGTTTCTGTTAGGAAGTGGAA 57.894 39.130 0.00 0.00 0.00 3.53
1808 3968 4.764050 TGTGTTTCTGTTAGGAAGTGGA 57.236 40.909 0.00 0.00 0.00 4.02
1809 3969 4.638421 TGTTGTGTTTCTGTTAGGAAGTGG 59.362 41.667 0.00 0.00 0.00 4.00
1810 3970 5.811399 TGTTGTGTTTCTGTTAGGAAGTG 57.189 39.130 0.00 0.00 0.00 3.16
1811 3971 6.827586 TTTGTTGTGTTTCTGTTAGGAAGT 57.172 33.333 0.00 0.00 0.00 3.01
1812 3972 7.087639 TGTTTTGTTGTGTTTCTGTTAGGAAG 58.912 34.615 0.00 0.00 0.00 3.46
1813 3973 6.982852 TGTTTTGTTGTGTTTCTGTTAGGAA 58.017 32.000 0.00 0.00 0.00 3.36
1814 3974 6.576662 TGTTTTGTTGTGTTTCTGTTAGGA 57.423 33.333 0.00 0.00 0.00 2.94
1815 3975 7.826260 ATTGTTTTGTTGTGTTTCTGTTAGG 57.174 32.000 0.00 0.00 0.00 2.69
1818 3978 8.716909 CCTTTATTGTTTTGTTGTGTTTCTGTT 58.283 29.630 0.00 0.00 0.00 3.16
1819 3979 7.875554 ACCTTTATTGTTTTGTTGTGTTTCTGT 59.124 29.630 0.00 0.00 0.00 3.41
1820 3980 8.250538 ACCTTTATTGTTTTGTTGTGTTTCTG 57.749 30.769 0.00 0.00 0.00 3.02
1821 3981 9.930693 TTACCTTTATTGTTTTGTTGTGTTTCT 57.069 25.926 0.00 0.00 0.00 2.52
1824 3984 9.713713 AGTTTACCTTTATTGTTTTGTTGTGTT 57.286 25.926 0.00 0.00 0.00 3.32
1825 3985 9.361315 GAGTTTACCTTTATTGTTTTGTTGTGT 57.639 29.630 0.00 0.00 0.00 3.72
1826 3986 9.360093 TGAGTTTACCTTTATTGTTTTGTTGTG 57.640 29.630 0.00 0.00 0.00 3.33
1827 3987 9.930693 TTGAGTTTACCTTTATTGTTTTGTTGT 57.069 25.926 0.00 0.00 0.00 3.32
1839 3999 9.096823 TGGAGTATCTTCTTGAGTTTACCTTTA 57.903 33.333 0.00 0.00 33.73 1.85
1840 4000 7.878644 GTGGAGTATCTTCTTGAGTTTACCTTT 59.121 37.037 0.00 0.00 33.73 3.11
1887 4047 8.226448 CGGTCTCAAATAAATGATAGAGATTGC 58.774 37.037 0.00 0.00 33.70 3.56
1894 4054 6.712241 ATCGCGGTCTCAAATAAATGATAG 57.288 37.500 6.13 0.00 0.00 2.08
1909 4069 3.858238 GCCACTCTATAAATATCGCGGTC 59.142 47.826 6.13 0.00 0.00 4.79
1913 4073 4.482386 TGTCGCCACTCTATAAATATCGC 58.518 43.478 0.00 0.00 0.00 4.58
1916 4076 6.080648 TCGTTGTCGCCACTCTATAAATAT 57.919 37.500 0.00 0.00 36.96 1.28
1917 4077 5.503662 TCGTTGTCGCCACTCTATAAATA 57.496 39.130 0.00 0.00 36.96 1.40
1918 4078 4.380841 TCGTTGTCGCCACTCTATAAAT 57.619 40.909 0.00 0.00 36.96 1.40
1925 4085 0.716108 CTGAATCGTTGTCGCCACTC 59.284 55.000 0.00 0.00 36.96 3.51
1942 4102 8.761575 ATTGGTTGAGTTATTATTGTTTGCTG 57.238 30.769 0.00 0.00 0.00 4.41
1957 4117 6.365520 ACAGTAGAAAGGAAATTGGTTGAGT 58.634 36.000 0.00 0.00 0.00 3.41
1978 4138 5.045668 TGCATGCATGTTTACTTGTACAG 57.954 39.130 26.79 0.00 0.00 2.74
1998 4158 4.966326 ACGAAGTTAGGCAAGAAGCATGC 61.966 47.826 10.51 10.51 42.92 4.06
1999 4159 2.744202 ACGAAGTTAGGCAAGAAGCATG 59.256 45.455 0.00 0.00 42.92 4.06
2012 4172 6.576185 ACTTACACAAGGAGAAACGAAGTTA 58.424 36.000 0.00 0.00 42.97 2.24
2040 4200 6.149142 GCAAATTAAACATTTCTGCCATTCCA 59.851 34.615 0.00 0.00 0.00 3.53
2098 4264 8.230486 CACCAAAGACAAGTGTTTACTATCATC 58.770 37.037 0.00 0.00 35.69 2.92
2099 4265 7.308589 GCACCAAAGACAAGTGTTTACTATCAT 60.309 37.037 0.00 0.00 35.69 2.45
2100 4266 6.017440 GCACCAAAGACAAGTGTTTACTATCA 60.017 38.462 0.00 0.00 35.69 2.15
2436 4606 8.776376 ATTTGTAATGGCTTCCTACAAAAATG 57.224 30.769 11.88 0.00 44.39 2.32
2482 4658 3.130516 AGAACAATCCTGCAAGCATCATG 59.869 43.478 0.00 0.00 0.00 3.07
2572 4748 0.476771 TTTGTCCACCCCCTCAACTC 59.523 55.000 0.00 0.00 0.00 3.01
2609 4785 1.483004 TCTTCAACACGGTGGTCAAGA 59.517 47.619 8.52 8.52 0.00 3.02
2621 4797 5.304686 AGAAAGTGGTACCATCTTCAACA 57.695 39.130 27.65 1.05 0.00 3.33
2723 4899 2.127758 CGTCCTTTTGTCACGCGC 60.128 61.111 5.73 0.00 0.00 6.86
2741 4917 2.564062 ACATCCACATTTGAAAGGCCAG 59.436 45.455 5.01 0.00 0.00 4.85
2762 4938 0.969149 ACCATGAGCAGACAACTCGA 59.031 50.000 0.00 0.00 36.94 4.04
2826 5002 2.099592 CACAGTGGTCAAGCAACACAAT 59.900 45.455 0.00 0.00 37.58 2.71
2917 5093 2.029844 GCCACTCTCAGCGTTCCAC 61.030 63.158 0.00 0.00 0.00 4.02
3146 5322 6.982141 AGACGATACACAACAGTTAGTTTGAA 59.018 34.615 0.00 0.00 38.74 2.69
3345 5527 0.469892 ACCCACCCTTGCCAAAAGAG 60.470 55.000 0.00 0.00 0.00 2.85
3615 5825 3.023735 GCCCCCTCCACCCAATCT 61.024 66.667 0.00 0.00 0.00 2.40
3732 5945 1.305802 TGGTACCATCTCGGGTGCT 60.306 57.895 11.60 0.00 42.47 4.40
3877 6091 2.125912 CTTCCGCGTCTCCCACTG 60.126 66.667 4.92 0.00 0.00 3.66
3901 6115 2.165167 CACTGAACCCATTGATGCTGT 58.835 47.619 0.00 0.00 0.00 4.40
4016 6230 9.202273 CTTCCTACAATGAATATAACAGCTCTC 57.798 37.037 0.00 0.00 0.00 3.20
4017 6231 8.928448 TCTTCCTACAATGAATATAACAGCTCT 58.072 33.333 0.00 0.00 0.00 4.09
4018 6232 9.547753 TTCTTCCTACAATGAATATAACAGCTC 57.452 33.333 0.00 0.00 0.00 4.09
4019 6233 9.553064 CTTCTTCCTACAATGAATATAACAGCT 57.447 33.333 0.00 0.00 0.00 4.24
4020 6234 9.547753 TCTTCTTCCTACAATGAATATAACAGC 57.452 33.333 0.00 0.00 0.00 4.40
4022 6236 9.529325 CGTCTTCTTCCTACAATGAATATAACA 57.471 33.333 0.00 0.00 0.00 2.41
4023 6237 8.979574 CCGTCTTCTTCCTACAATGAATATAAC 58.020 37.037 0.00 0.00 0.00 1.89
4024 6238 8.701895 ACCGTCTTCTTCCTACAATGAATATAA 58.298 33.333 0.00 0.00 0.00 0.98
4038 6252 2.353505 GGTCCTTGTACCGTCTTCTTCC 60.354 54.545 0.00 0.00 0.00 3.46
4053 6267 1.125711 ACCAAGCAGTACGGGTCCTT 61.126 55.000 0.00 0.00 0.00 3.36
4062 6276 6.412214 GTTTCCCTCTATAAACCAAGCAGTA 58.588 40.000 0.00 0.00 30.93 2.74
4088 6302 2.288729 GCCGTTGTTTAGGTTTTCGTCT 59.711 45.455 0.00 0.00 0.00 4.18
4090 6304 2.015587 TGCCGTTGTTTAGGTTTTCGT 58.984 42.857 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.