Multiple sequence alignment - TraesCS2D01G570600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G570600 chr2D 100.000 3097 0 0 1 3097 637522812 637525908 0.000000e+00 5720.0
1 TraesCS2D01G570600 chr2D 83.398 259 27 10 2267 2516 38785303 38785554 3.110000e-55 226.0
2 TraesCS2D01G570600 chr2D 94.444 72 4 0 1105 1176 637605316 637605387 9.080000e-21 111.0
3 TraesCS2D01G570600 chr2B 86.217 682 60 23 89 746 794894311 794894982 0.000000e+00 708.0
4 TraesCS2D01G570600 chr2B 84.731 334 27 13 1555 1873 794895662 794895986 2.320000e-81 313.0
5 TraesCS2D01G570600 chr2B 89.840 187 13 5 1359 1545 794895513 794895693 5.160000e-58 235.0
6 TraesCS2D01G570600 chr2B 78.857 350 24 22 871 1181 794895123 794895461 1.130000e-44 191.0
7 TraesCS2D01G570600 chr2B 91.150 113 10 0 2103 2215 794897360 794897472 1.490000e-33 154.0
8 TraesCS2D01G570600 chr2A 92.128 470 31 4 2496 2963 762500319 762499854 0.000000e+00 658.0
9 TraesCS2D01G570600 chr2A 94.340 371 18 2 2103 2473 762500676 762500309 1.610000e-157 566.0
10 TraesCS2D01G570600 chr2A 84.068 295 8 8 398 689 762501933 762501675 6.630000e-62 248.0
11 TraesCS2D01G570600 chr2A 83.226 155 7 7 1683 1818 762501658 762501504 1.170000e-24 124.0
12 TraesCS2D01G570600 chr2A 97.015 67 2 0 3031 3097 762499857 762499791 2.520000e-21 113.0
13 TraesCS2D01G570600 chr2A 96.667 60 2 0 1948 2007 762501424 762501365 1.970000e-17 100.0
14 TraesCS2D01G570600 chr1A 87.945 365 42 1 2735 3097 544122909 544123273 2.210000e-116 429.0
15 TraesCS2D01G570600 chr1A 78.674 347 45 21 2263 2597 544104791 544105120 1.460000e-48 204.0
16 TraesCS2D01G570600 chr3D 87.574 338 38 4 2761 3097 2137084 2137418 3.750000e-104 388.0
17 TraesCS2D01G570600 chr3D 82.812 256 28 8 2270 2516 497592560 497592808 6.730000e-52 215.0
18 TraesCS2D01G570600 chr1B 82.879 257 27 13 2267 2513 148865536 148865785 6.730000e-52 215.0
19 TraesCS2D01G570600 chr1B 94.737 38 2 0 2976 3013 38114941 38114978 3.340000e-05 60.2
20 TraesCS2D01G570600 chr6B 82.329 249 31 7 2266 2506 178666103 178666346 1.460000e-48 204.0
21 TraesCS2D01G570600 chr6D 83.562 219 23 6 2311 2521 472760933 472760720 3.150000e-45 193.0
22 TraesCS2D01G570600 chr6D 81.279 219 28 7 2311 2521 472762202 472761989 6.870000e-37 165.0
23 TraesCS2D01G570600 chr6D 82.394 142 14 6 2271 2411 428959023 428958892 2.520000e-21 113.0
24 TraesCS2D01G570600 chr7D 81.481 216 24 10 2304 2510 49793510 49793718 2.470000e-36 163.0
25 TraesCS2D01G570600 chr3A 84.459 148 7 6 2950 3097 1930992 1930861 6.970000e-27 132.0
26 TraesCS2D01G570600 chr3A 100.000 31 0 0 1094 1124 653883430 653883460 1.200000e-04 58.4
27 TraesCS2D01G570600 chrUn 94.737 38 2 0 2976 3013 292626 292589 3.340000e-05 60.2
28 TraesCS2D01G570600 chr3B 94.737 38 2 0 2976 3013 7142011 7142048 3.340000e-05 60.2
29 TraesCS2D01G570600 chr1D 94.737 38 2 0 2976 3013 21878750 21878787 3.340000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G570600 chr2D 637522812 637525908 3096 False 5720.0 5720 100.000000 1 3097 1 chr2D.!!$F2 3096
1 TraesCS2D01G570600 chr2B 794894311 794897472 3161 False 320.2 708 86.159000 89 2215 5 chr2B.!!$F1 2126
2 TraesCS2D01G570600 chr2A 762499791 762501933 2142 True 301.5 658 91.240667 398 3097 6 chr2A.!!$R1 2699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 880 0.031616 GGAGTCCTGGACTGGAGGAT 60.032 60.0 32.86 8.2 43.53 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2244 3699 0.172578 GTATTGCACGGGCCTTTTCC 59.827 55.0 7.46 0.0 40.13 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.783979 TCTCCAGATAGACCCTCCTCC 59.216 57.143 0.00 0.00 0.00 4.30
21 22 1.786441 CTCCAGATAGACCCTCCTCCT 59.214 57.143 0.00 0.00 0.00 3.69
22 23 2.178984 CTCCAGATAGACCCTCCTCCTT 59.821 54.545 0.00 0.00 0.00 3.36
23 24 2.091055 TCCAGATAGACCCTCCTCCTTG 60.091 54.545 0.00 0.00 0.00 3.61
24 25 2.091055 CCAGATAGACCCTCCTCCTTGA 60.091 54.545 0.00 0.00 0.00 3.02
25 26 2.962421 CAGATAGACCCTCCTCCTTGAC 59.038 54.545 0.00 0.00 0.00 3.18
26 27 2.587777 AGATAGACCCTCCTCCTTGACA 59.412 50.000 0.00 0.00 0.00 3.58
27 28 3.208692 AGATAGACCCTCCTCCTTGACAT 59.791 47.826 0.00 0.00 0.00 3.06
28 29 2.350863 AGACCCTCCTCCTTGACATT 57.649 50.000 0.00 0.00 0.00 2.71
29 30 1.912043 AGACCCTCCTCCTTGACATTG 59.088 52.381 0.00 0.00 0.00 2.82
30 31 1.909302 GACCCTCCTCCTTGACATTGA 59.091 52.381 0.00 0.00 0.00 2.57
31 32 1.630878 ACCCTCCTCCTTGACATTGAC 59.369 52.381 0.00 0.00 0.00 3.18
32 33 1.406069 CCCTCCTCCTTGACATTGACG 60.406 57.143 0.00 0.00 0.00 4.35
33 34 1.550524 CCTCCTCCTTGACATTGACGA 59.449 52.381 0.00 0.00 0.00 4.20
34 35 2.169352 CCTCCTCCTTGACATTGACGAT 59.831 50.000 0.00 0.00 0.00 3.73
35 36 3.452474 CTCCTCCTTGACATTGACGATC 58.548 50.000 0.00 0.00 0.00 3.69
36 37 3.099905 TCCTCCTTGACATTGACGATCT 58.900 45.455 0.00 0.00 0.00 2.75
37 38 3.515502 TCCTCCTTGACATTGACGATCTT 59.484 43.478 0.00 0.00 0.00 2.40
38 39 4.020218 TCCTCCTTGACATTGACGATCTTT 60.020 41.667 0.00 0.00 0.00 2.52
39 40 4.331168 CCTCCTTGACATTGACGATCTTTC 59.669 45.833 0.00 0.00 0.00 2.62
40 41 4.893608 TCCTTGACATTGACGATCTTTCA 58.106 39.130 0.00 0.00 0.00 2.69
41 42 4.931601 TCCTTGACATTGACGATCTTTCAG 59.068 41.667 0.00 0.00 0.00 3.02
42 43 4.931601 CCTTGACATTGACGATCTTTCAGA 59.068 41.667 0.00 0.00 0.00 3.27
43 44 5.163913 CCTTGACATTGACGATCTTTCAGAC 60.164 44.000 0.00 0.00 0.00 3.51
44 45 5.139435 TGACATTGACGATCTTTCAGACT 57.861 39.130 0.00 0.00 0.00 3.24
45 46 5.164233 TGACATTGACGATCTTTCAGACTC 58.836 41.667 0.00 0.00 0.00 3.36
46 47 4.169508 ACATTGACGATCTTTCAGACTCG 58.830 43.478 0.00 0.00 34.12 4.18
47 48 2.264109 TGACGATCTTTCAGACTCGC 57.736 50.000 0.00 0.00 32.47 5.03
48 49 1.135373 TGACGATCTTTCAGACTCGCC 60.135 52.381 0.00 0.00 32.47 5.54
49 50 0.179161 ACGATCTTTCAGACTCGCCG 60.179 55.000 0.00 0.00 32.47 6.46
50 51 0.179161 CGATCTTTCAGACTCGCCGT 60.179 55.000 0.00 0.00 0.00 5.68
51 52 1.272781 GATCTTTCAGACTCGCCGTG 58.727 55.000 0.00 0.00 0.00 4.94
52 53 0.737715 ATCTTTCAGACTCGCCGTGC 60.738 55.000 0.00 0.00 0.00 5.34
53 54 2.357034 TTTCAGACTCGCCGTGCC 60.357 61.111 0.00 0.00 0.00 5.01
54 55 2.771763 CTTTCAGACTCGCCGTGCCT 62.772 60.000 0.00 0.00 0.00 4.75
55 56 1.529152 TTTCAGACTCGCCGTGCCTA 61.529 55.000 0.00 0.00 0.00 3.93
56 57 1.320344 TTCAGACTCGCCGTGCCTAT 61.320 55.000 0.00 0.00 0.00 2.57
57 58 1.589993 CAGACTCGCCGTGCCTATG 60.590 63.158 0.00 0.00 0.00 2.23
58 59 2.962253 GACTCGCCGTGCCTATGC 60.962 66.667 0.00 0.00 38.26 3.14
59 60 4.530857 ACTCGCCGTGCCTATGCC 62.531 66.667 0.00 0.00 36.33 4.40
60 61 4.529219 CTCGCCGTGCCTATGCCA 62.529 66.667 0.00 0.00 36.33 4.92
61 62 4.089239 TCGCCGTGCCTATGCCAA 62.089 61.111 0.00 0.00 36.33 4.52
62 63 3.576356 CGCCGTGCCTATGCCAAG 61.576 66.667 0.00 0.00 36.33 3.61
63 64 2.438434 GCCGTGCCTATGCCAAGT 60.438 61.111 0.00 0.00 36.33 3.16
64 65 2.764314 GCCGTGCCTATGCCAAGTG 61.764 63.158 0.00 0.00 36.33 3.16
65 66 2.114670 CCGTGCCTATGCCAAGTGG 61.115 63.158 0.00 0.00 36.33 4.00
66 67 1.377202 CGTGCCTATGCCAAGTGGT 60.377 57.895 0.00 0.00 37.57 4.16
67 68 1.647545 CGTGCCTATGCCAAGTGGTG 61.648 60.000 0.00 0.00 37.57 4.17
75 76 2.600731 CCAAGTGGTGGTGGTGGT 59.399 61.111 0.00 0.00 43.20 4.16
76 77 1.827789 CCAAGTGGTGGTGGTGGTG 60.828 63.158 0.00 0.00 43.20 4.17
77 78 1.077068 CAAGTGGTGGTGGTGGTGT 60.077 57.895 0.00 0.00 0.00 4.16
78 79 1.101049 CAAGTGGTGGTGGTGGTGTC 61.101 60.000 0.00 0.00 0.00 3.67
79 80 2.203294 GTGGTGGTGGTGGTGTCC 60.203 66.667 0.00 0.00 0.00 4.02
80 81 2.367648 TGGTGGTGGTGGTGTCCT 60.368 61.111 0.00 0.00 0.00 3.85
81 82 2.430367 GGTGGTGGTGGTGTCCTC 59.570 66.667 0.00 0.00 0.00 3.71
82 83 2.147387 GGTGGTGGTGGTGTCCTCT 61.147 63.158 0.00 0.00 0.00 3.69
83 84 1.071471 GTGGTGGTGGTGTCCTCTG 59.929 63.158 0.00 0.00 0.00 3.35
84 85 2.146724 TGGTGGTGGTGTCCTCTGG 61.147 63.158 0.00 0.00 0.00 3.86
85 86 2.750350 GTGGTGGTGTCCTCTGGG 59.250 66.667 0.00 0.00 0.00 4.45
86 87 2.529136 TGGTGGTGTCCTCTGGGG 60.529 66.667 0.00 0.00 0.00 4.96
87 88 2.203938 GGTGGTGTCCTCTGGGGA 60.204 66.667 0.00 0.00 42.77 4.81
91 92 2.352032 GGTGTCCTCTGGGGAGTCG 61.352 68.421 0.00 0.00 46.10 4.18
100 101 4.500116 GGGGAGTCGCTGTCGCTC 62.500 72.222 7.19 0.00 37.79 5.03
101 102 3.444805 GGGAGTCGCTGTCGCTCT 61.445 66.667 0.00 0.00 38.23 4.09
102 103 2.202544 GGAGTCGCTGTCGCTCTG 60.203 66.667 11.79 0.00 38.23 3.35
104 105 4.427661 AGTCGCTGTCGCTCTGGC 62.428 66.667 0.00 0.00 35.26 4.85
105 106 4.427661 GTCGCTGTCGCTCTGGCT 62.428 66.667 0.00 0.00 36.09 4.75
121 122 0.823356 GGCTGAAGTGCCCTTGTTCA 60.823 55.000 0.00 0.00 46.82 3.18
129 130 1.336755 GTGCCCTTGTTCAATGTCGTT 59.663 47.619 0.00 0.00 0.00 3.85
133 134 2.616376 CCCTTGTTCAATGTCGTTGTCA 59.384 45.455 4.72 3.65 38.95 3.58
160 161 2.881352 CGCCTTCTTCTCGGTCGC 60.881 66.667 0.00 0.00 0.00 5.19
201 202 2.008329 GCTCCTCATCTTGTTGCAGAG 58.992 52.381 0.00 0.00 0.00 3.35
202 203 2.630158 CTCCTCATCTTGTTGCAGAGG 58.370 52.381 9.14 9.14 45.64 3.69
256 257 2.433994 GGAGAGGCAGGAGCAGAGG 61.434 68.421 0.00 0.00 44.61 3.69
276 277 2.158711 GGATCTTGGAGATGACATGGCA 60.159 50.000 2.18 2.18 34.53 4.92
322 323 2.776330 CAGACGACGTAGAAGAAGAGC 58.224 52.381 0.00 0.00 0.00 4.09
340 341 2.563297 CAGCACTGCATCCATGTGT 58.437 52.632 3.30 0.00 34.52 3.72
341 342 1.741528 CAGCACTGCATCCATGTGTA 58.258 50.000 3.30 0.00 34.52 2.90
342 343 1.399440 CAGCACTGCATCCATGTGTAC 59.601 52.381 3.30 0.00 34.52 2.90
343 344 1.003464 AGCACTGCATCCATGTGTACA 59.997 47.619 3.30 0.00 34.52 2.90
344 345 2.019249 GCACTGCATCCATGTGTACAT 58.981 47.619 0.00 0.00 36.96 2.29
358 359 7.043961 CATGTGTACATGTGATACTCCTACT 57.956 40.000 9.11 0.00 46.40 2.57
359 360 8.166422 CATGTGTACATGTGATACTCCTACTA 57.834 38.462 9.11 0.00 46.40 1.82
367 368 9.368416 ACATGTGATACTCCTACTATGTAATGT 57.632 33.333 0.00 0.00 0.00 2.71
374 375 6.750148 ACTCCTACTATGTAATGTAAGCAGC 58.250 40.000 0.00 0.00 0.00 5.25
378 379 6.865726 CCTACTATGTAATGTAAGCAGCAGAG 59.134 42.308 0.00 0.00 0.00 3.35
394 426 3.070734 AGCAGAGATTTGTGTGTGTCTCT 59.929 43.478 0.00 0.00 46.10 3.10
396 428 4.679373 AGAGATTTGTGTGTGTCTCTGT 57.321 40.909 3.18 0.00 44.14 3.41
484 516 2.856032 CTGGCGACGCAGAAGTTG 59.144 61.111 23.09 0.00 0.00 3.16
501 533 1.977412 GTTGTCGACGTAGCAGAAGAC 59.023 52.381 11.62 0.00 0.00 3.01
511 543 0.247736 AGCAGAAGACGTCCCACATC 59.752 55.000 13.01 3.48 0.00 3.06
553 585 4.598894 CATGGCCGGCGAGGAGAG 62.599 72.222 18.93 0.00 45.00 3.20
576 608 0.608640 AGGTTGGCGGTCAGTAGAAG 59.391 55.000 0.00 0.00 0.00 2.85
577 609 0.606604 GGTTGGCGGTCAGTAGAAGA 59.393 55.000 0.00 0.00 0.00 2.87
579 611 2.338500 GTTGGCGGTCAGTAGAAGAAG 58.662 52.381 0.00 0.00 0.00 2.85
581 613 0.175989 GGCGGTCAGTAGAAGAAGGG 59.824 60.000 0.00 0.00 0.00 3.95
582 614 0.175989 GCGGTCAGTAGAAGAAGGGG 59.824 60.000 0.00 0.00 0.00 4.79
583 615 1.848652 CGGTCAGTAGAAGAAGGGGA 58.151 55.000 0.00 0.00 0.00 4.81
584 616 2.176889 CGGTCAGTAGAAGAAGGGGAA 58.823 52.381 0.00 0.00 0.00 3.97
585 617 2.565834 CGGTCAGTAGAAGAAGGGGAAA 59.434 50.000 0.00 0.00 0.00 3.13
586 618 3.616802 CGGTCAGTAGAAGAAGGGGAAAC 60.617 52.174 0.00 0.00 0.00 2.78
587 619 3.583526 GGTCAGTAGAAGAAGGGGAAACT 59.416 47.826 0.00 0.00 0.00 2.66
588 620 4.322877 GGTCAGTAGAAGAAGGGGAAACTC 60.323 50.000 0.00 0.00 0.00 3.01
589 621 4.283722 GTCAGTAGAAGAAGGGGAAACTCA 59.716 45.833 0.00 0.00 0.00 3.41
590 622 4.905456 TCAGTAGAAGAAGGGGAAACTCAA 59.095 41.667 0.00 0.00 0.00 3.02
591 623 5.548056 TCAGTAGAAGAAGGGGAAACTCAAT 59.452 40.000 0.00 0.00 0.00 2.57
592 624 5.645497 CAGTAGAAGAAGGGGAAACTCAATG 59.355 44.000 0.00 0.00 0.00 2.82
593 625 5.548056 AGTAGAAGAAGGGGAAACTCAATGA 59.452 40.000 0.00 0.00 0.00 2.57
594 626 5.324832 AGAAGAAGGGGAAACTCAATGAA 57.675 39.130 0.00 0.00 0.00 2.57
595 627 5.896963 AGAAGAAGGGGAAACTCAATGAAT 58.103 37.500 0.00 0.00 0.00 2.57
596 628 5.713861 AGAAGAAGGGGAAACTCAATGAATG 59.286 40.000 0.00 0.00 0.00 2.67
597 629 5.261040 AGAAGGGGAAACTCAATGAATGA 57.739 39.130 0.00 0.00 36.38 2.57
598 630 5.644188 AGAAGGGGAAACTCAATGAATGAA 58.356 37.500 0.00 0.00 37.67 2.57
599 631 6.259123 AGAAGGGGAAACTCAATGAATGAAT 58.741 36.000 0.00 0.00 37.67 2.57
600 632 5.927281 AGGGGAAACTCAATGAATGAATG 57.073 39.130 0.00 0.00 37.67 2.67
601 633 5.582953 AGGGGAAACTCAATGAATGAATGA 58.417 37.500 0.00 0.00 37.67 2.57
602 634 6.018469 AGGGGAAACTCAATGAATGAATGAA 58.982 36.000 0.00 0.00 37.67 2.57
663 706 1.078848 CCTTGCCGGAGAGGAAGTG 60.079 63.158 16.33 0.00 45.00 3.16
683 726 0.985490 GATGGGCTTGGAGAGGAGGT 60.985 60.000 0.00 0.00 0.00 3.85
703 746 1.376037 GGCGAGGACCTTGGTGAAG 60.376 63.158 10.94 0.00 0.00 3.02
741 784 0.673437 AACACGTTCCCCATTTGCTG 59.327 50.000 0.00 0.00 0.00 4.41
746 789 0.899717 GTTCCCCATTTGCTGCCTGA 60.900 55.000 0.00 0.00 0.00 3.86
747 790 0.041535 TTCCCCATTTGCTGCCTGAT 59.958 50.000 0.00 0.00 0.00 2.90
748 791 0.041535 TCCCCATTTGCTGCCTGATT 59.958 50.000 0.00 0.00 0.00 2.57
749 792 0.462789 CCCCATTTGCTGCCTGATTC 59.537 55.000 0.00 0.00 0.00 2.52
751 794 1.829222 CCCATTTGCTGCCTGATTCTT 59.171 47.619 0.00 0.00 0.00 2.52
752 795 2.159142 CCCATTTGCTGCCTGATTCTTC 60.159 50.000 0.00 0.00 0.00 2.87
753 796 2.758979 CCATTTGCTGCCTGATTCTTCT 59.241 45.455 0.00 0.00 0.00 2.85
754 797 3.194968 CCATTTGCTGCCTGATTCTTCTT 59.805 43.478 0.00 0.00 0.00 2.52
755 798 4.421948 CATTTGCTGCCTGATTCTTCTTC 58.578 43.478 0.00 0.00 0.00 2.87
756 799 3.430042 TTGCTGCCTGATTCTTCTTCT 57.570 42.857 0.00 0.00 0.00 2.85
757 800 3.430042 TGCTGCCTGATTCTTCTTCTT 57.570 42.857 0.00 0.00 0.00 2.52
758 801 3.341823 TGCTGCCTGATTCTTCTTCTTC 58.658 45.455 0.00 0.00 0.00 2.87
759 802 3.008813 TGCTGCCTGATTCTTCTTCTTCT 59.991 43.478 0.00 0.00 0.00 2.85
760 803 4.009002 GCTGCCTGATTCTTCTTCTTCTT 58.991 43.478 0.00 0.00 0.00 2.52
761 804 4.094739 GCTGCCTGATTCTTCTTCTTCTTC 59.905 45.833 0.00 0.00 0.00 2.87
764 807 5.936956 TGCCTGATTCTTCTTCTTCTTCTTC 59.063 40.000 0.00 0.00 0.00 2.87
765 808 6.172630 GCCTGATTCTTCTTCTTCTTCTTCT 58.827 40.000 0.00 0.00 0.00 2.85
766 809 6.654582 GCCTGATTCTTCTTCTTCTTCTTCTT 59.345 38.462 0.00 0.00 0.00 2.52
767 810 7.148423 GCCTGATTCTTCTTCTTCTTCTTCTTC 60.148 40.741 0.00 0.00 0.00 2.87
768 811 8.096414 CCTGATTCTTCTTCTTCTTCTTCTTCT 58.904 37.037 0.00 0.00 0.00 2.85
769 812 9.492973 CTGATTCTTCTTCTTCTTCTTCTTCTT 57.507 33.333 0.00 0.00 0.00 2.52
770 813 9.487790 TGATTCTTCTTCTTCTTCTTCTTCTTC 57.512 33.333 0.00 0.00 0.00 2.87
771 814 9.487790 GATTCTTCTTCTTCTTCTTCTTCTTCA 57.512 33.333 0.00 0.00 0.00 3.02
772 815 8.885494 TTCTTCTTCTTCTTCTTCTTCTTCAG 57.115 34.615 0.00 0.00 0.00 3.02
773 816 8.017418 TCTTCTTCTTCTTCTTCTTCTTCAGT 57.983 34.615 0.00 0.00 0.00 3.41
774 817 8.141268 TCTTCTTCTTCTTCTTCTTCTTCAGTC 58.859 37.037 0.00 0.00 0.00 3.51
775 818 6.754193 TCTTCTTCTTCTTCTTCTTCAGTCC 58.246 40.000 0.00 0.00 0.00 3.85
776 819 5.127693 TCTTCTTCTTCTTCTTCAGTCCG 57.872 43.478 0.00 0.00 0.00 4.79
777 820 4.585162 TCTTCTTCTTCTTCTTCAGTCCGT 59.415 41.667 0.00 0.00 0.00 4.69
778 821 4.506886 TCTTCTTCTTCTTCAGTCCGTC 57.493 45.455 0.00 0.00 0.00 4.79
780 823 1.893801 TCTTCTTCTTCAGTCCGTCCC 59.106 52.381 0.00 0.00 0.00 4.46
781 824 1.896465 CTTCTTCTTCAGTCCGTCCCT 59.104 52.381 0.00 0.00 0.00 4.20
782 825 1.257743 TCTTCTTCAGTCCGTCCCTG 58.742 55.000 0.00 0.00 0.00 4.45
784 827 1.827399 TTCTTCAGTCCGTCCCTGGC 61.827 60.000 0.00 0.00 0.00 4.85
785 828 2.525629 TTCAGTCCGTCCCTGGCA 60.526 61.111 0.00 0.00 0.00 4.92
786 829 1.903877 CTTCAGTCCGTCCCTGGCAT 61.904 60.000 0.00 0.00 0.00 4.40
787 830 1.899437 TTCAGTCCGTCCCTGGCATC 61.899 60.000 0.00 0.00 0.00 3.91
788 831 3.083997 AGTCCGTCCCTGGCATCC 61.084 66.667 0.00 0.00 0.00 3.51
792 835 4.552365 CGTCCCTGGCATCCGCAT 62.552 66.667 0.00 0.00 41.24 4.73
793 836 2.592861 GTCCCTGGCATCCGCATC 60.593 66.667 0.00 0.00 41.24 3.91
794 837 3.877450 TCCCTGGCATCCGCATCC 61.877 66.667 0.00 0.00 41.24 3.51
795 838 4.193893 CCCTGGCATCCGCATCCA 62.194 66.667 0.00 0.00 41.24 3.41
796 839 2.903855 CCTGGCATCCGCATCCAC 60.904 66.667 0.00 0.00 41.24 4.02
814 857 4.467084 GCCGCCGACCAATCTGGA 62.467 66.667 0.00 0.00 40.96 3.86
815 858 2.511600 CCGCCGACCAATCTGGAC 60.512 66.667 0.00 0.00 40.96 4.02
816 859 2.511600 CGCCGACCAATCTGGACC 60.512 66.667 0.00 0.00 40.96 4.46
817 860 2.990479 GCCGACCAATCTGGACCT 59.010 61.111 0.00 0.00 40.96 3.85
818 861 1.450312 GCCGACCAATCTGGACCTG 60.450 63.158 0.00 0.00 40.96 4.00
819 862 1.221840 CCGACCAATCTGGACCTGG 59.778 63.158 0.00 0.00 40.96 4.45
820 863 1.264749 CCGACCAATCTGGACCTGGA 61.265 60.000 0.00 0.00 40.96 3.86
823 866 1.208293 GACCAATCTGGACCTGGAGTC 59.792 57.143 0.00 1.11 40.96 3.36
830 873 4.876752 GACCTGGAGTCCTGGACT 57.123 61.111 34.90 28.70 46.42 3.85
831 874 2.281830 GACCTGGAGTCCTGGACTG 58.718 63.158 34.90 20.26 43.53 3.51
834 877 0.975040 CCTGGAGTCCTGGACTGGAG 60.975 65.000 32.86 24.50 43.53 3.86
835 878 0.975040 CTGGAGTCCTGGACTGGAGG 60.975 65.000 32.86 15.74 43.53 4.30
836 879 1.388531 GGAGTCCTGGACTGGAGGA 59.611 63.158 32.86 0.00 43.53 3.71
837 880 0.031616 GGAGTCCTGGACTGGAGGAT 60.032 60.000 32.86 8.20 43.53 3.24
838 881 1.118838 GAGTCCTGGACTGGAGGATG 58.881 60.000 32.86 0.00 43.53 3.51
839 882 0.980231 AGTCCTGGACTGGAGGATGC 60.980 60.000 27.85 0.00 41.76 3.91
841 884 2.202987 CTGGACTGGAGGATGCGC 60.203 66.667 0.00 0.00 0.00 6.09
842 885 4.147449 TGGACTGGAGGATGCGCG 62.147 66.667 0.00 0.00 0.00 6.86
843 886 4.148825 GGACTGGAGGATGCGCGT 62.149 66.667 8.43 0.00 0.00 6.01
844 887 2.887568 GACTGGAGGATGCGCGTG 60.888 66.667 6.97 0.00 0.00 5.34
846 889 3.190849 CTGGAGGATGCGCGTGTG 61.191 66.667 6.97 0.00 0.00 3.82
847 890 3.939837 CTGGAGGATGCGCGTGTGT 62.940 63.158 6.97 0.00 0.00 3.72
848 891 3.490759 GGAGGATGCGCGTGTGTG 61.491 66.667 6.97 0.00 0.00 3.82
850 893 4.314440 AGGATGCGCGTGTGTGGT 62.314 61.111 6.97 0.00 0.00 4.16
851 894 3.353836 GGATGCGCGTGTGTGGTT 61.354 61.111 6.97 0.00 0.00 3.67
852 895 2.637025 GATGCGCGTGTGTGGTTT 59.363 55.556 6.97 0.00 0.00 3.27
854 897 1.268113 GATGCGCGTGTGTGGTTTTG 61.268 55.000 6.97 0.00 0.00 2.44
855 898 3.319316 GCGCGTGTGTGGTTTTGC 61.319 61.111 8.43 0.00 0.00 3.68
856 899 2.407210 CGCGTGTGTGGTTTTGCT 59.593 55.556 0.00 0.00 0.00 3.91
875 918 4.003788 CCGGCCGGAGTTGTGTCT 62.004 66.667 41.82 0.00 37.50 3.41
891 951 2.904866 CTCGCCGGAGAGGGAGAG 60.905 72.222 25.99 8.06 45.47 3.20
898 958 0.108585 CGGAGAGGGAGAGAGAGAGG 59.891 65.000 0.00 0.00 0.00 3.69
899 959 0.478507 GGAGAGGGAGAGAGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
900 960 0.178990 GAGAGGGAGAGAGAGAGGGC 60.179 65.000 0.00 0.00 0.00 5.19
927 987 0.946221 GCACCACGTCCTCTGTCTTG 60.946 60.000 0.00 0.00 0.00 3.02
929 989 1.374758 CCACGTCCTCTGTCTTGCC 60.375 63.158 0.00 0.00 0.00 4.52
930 990 1.668294 CACGTCCTCTGTCTTGCCT 59.332 57.895 0.00 0.00 0.00 4.75
959 1019 6.610741 TTCTTCTTCTTCTCAAAACAGAGC 57.389 37.500 0.00 0.00 35.59 4.09
974 1035 1.375268 GAGCCGAGCAGAGCAGTTT 60.375 57.895 0.00 0.00 0.00 2.66
984 1045 0.663153 AGAGCAGTTTTGAACCGCAC 59.337 50.000 2.34 0.00 37.27 5.34
986 1047 1.657181 GCAGTTTTGAACCGCACCG 60.657 57.895 0.00 0.00 34.95 4.94
987 1048 1.657181 CAGTTTTGAACCGCACCGC 60.657 57.895 0.00 0.00 0.00 5.68
988 1049 2.115911 AGTTTTGAACCGCACCGCA 61.116 52.632 0.00 0.00 0.00 5.69
989 1050 1.007849 GTTTTGAACCGCACCGCAT 60.008 52.632 0.00 0.00 0.00 4.73
991 1052 0.318275 TTTTGAACCGCACCGCATTC 60.318 50.000 0.00 0.00 0.00 2.67
992 1053 1.169661 TTTGAACCGCACCGCATTCT 61.170 50.000 0.00 0.00 0.00 2.40
993 1054 0.320858 TTGAACCGCACCGCATTCTA 60.321 50.000 0.00 0.00 0.00 2.10
995 1056 0.373716 GAACCGCACCGCATTCTAAG 59.626 55.000 0.00 0.00 0.00 2.18
996 1057 0.321298 AACCGCACCGCATTCTAAGT 60.321 50.000 0.00 0.00 0.00 2.24
998 1059 1.066716 ACCGCACCGCATTCTAAGTTA 60.067 47.619 0.00 0.00 0.00 2.24
999 1060 2.004017 CCGCACCGCATTCTAAGTTAA 58.996 47.619 0.00 0.00 0.00 2.01
1065 1141 3.997064 CTGACCGAGCGCCAGGAAG 62.997 68.421 23.31 15.84 0.00 3.46
1066 1142 4.821589 GACCGAGCGCCAGGAAGG 62.822 72.222 23.31 11.51 41.84 3.46
1068 1144 3.854669 CCGAGCGCCAGGAAGGAT 61.855 66.667 12.90 0.00 41.22 3.24
1088 1168 3.399181 GACCGACCATGGCCTCCA 61.399 66.667 13.04 0.00 38.19 3.86
1089 1169 2.933287 ACCGACCATGGCCTCCAA 60.933 61.111 13.04 0.00 36.95 3.53
1090 1170 2.124570 CCGACCATGGCCTCCAAG 60.125 66.667 13.04 0.00 36.95 3.61
1091 1171 2.669133 CCGACCATGGCCTCCAAGA 61.669 63.158 13.04 0.00 36.95 3.02
1092 1172 1.450312 CGACCATGGCCTCCAAGAC 60.450 63.158 13.04 0.00 36.95 3.01
1093 1173 1.077429 GACCATGGCCTCCAAGACC 60.077 63.158 13.04 0.00 36.95 3.85
1095 1175 2.669133 CCATGGCCTCCAAGACCGA 61.669 63.158 3.32 0.00 36.95 4.69
1096 1176 1.153289 CATGGCCTCCAAGACCGAG 60.153 63.158 3.32 0.00 36.95 4.63
1097 1177 1.613630 ATGGCCTCCAAGACCGAGT 60.614 57.895 3.32 0.00 36.95 4.18
1099 1179 2.435059 GCCTCCAAGACCGAGTGC 60.435 66.667 0.00 0.00 0.00 4.40
1100 1180 2.125912 CCTCCAAGACCGAGTGCG 60.126 66.667 0.00 0.00 37.24 5.34
1101 1181 2.636412 CCTCCAAGACCGAGTGCGA 61.636 63.158 0.00 0.00 40.82 5.10
1102 1182 1.153939 CTCCAAGACCGAGTGCGAG 60.154 63.158 0.00 0.00 40.82 5.03
1103 1183 1.867919 CTCCAAGACCGAGTGCGAGT 61.868 60.000 0.00 0.00 40.82 4.18
1192 1326 4.292178 GCCGCCCCTCTCGATCTG 62.292 72.222 0.00 0.00 0.00 2.90
1216 1350 3.847602 CAGCAGCGGGAGGAGGAG 61.848 72.222 0.00 0.00 0.00 3.69
1219 1353 2.837291 CAGCGGGAGGAGGAGGAG 60.837 72.222 0.00 0.00 0.00 3.69
1220 1354 4.150454 AGCGGGAGGAGGAGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
1221 1355 4.467107 GCGGGAGGAGGAGGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
1222 1356 2.443016 CGGGAGGAGGAGGAGGTG 60.443 72.222 0.00 0.00 0.00 4.00
1223 1357 2.041405 GGGAGGAGGAGGAGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
1224 1358 2.637640 GGGAGGAGGAGGAGGTGGA 61.638 68.421 0.00 0.00 0.00 4.02
1225 1359 1.075600 GGAGGAGGAGGAGGTGGAG 60.076 68.421 0.00 0.00 0.00 3.86
1226 1360 1.075600 GAGGAGGAGGAGGTGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
1227 1361 1.547755 AGGAGGAGGAGGTGGAGGA 60.548 63.158 0.00 0.00 0.00 3.71
1228 1362 1.382009 GGAGGAGGAGGTGGAGGAC 60.382 68.421 0.00 0.00 0.00 3.85
1229 1363 1.388531 GAGGAGGAGGTGGAGGACA 59.611 63.158 0.00 0.00 0.00 4.02
1230 1364 0.031616 GAGGAGGAGGTGGAGGACAT 60.032 60.000 0.00 0.00 0.00 3.06
1231 1365 0.326048 AGGAGGAGGTGGAGGACATG 60.326 60.000 0.00 0.00 0.00 3.21
1232 1366 1.341156 GGAGGAGGTGGAGGACATGG 61.341 65.000 0.00 0.00 0.00 3.66
1233 1367 0.618968 GAGGAGGTGGAGGACATGGT 60.619 60.000 0.00 0.00 0.00 3.55
1234 1368 0.618968 AGGAGGTGGAGGACATGGTC 60.619 60.000 0.00 0.00 0.00 4.02
1235 1369 0.909610 GGAGGTGGAGGACATGGTCA 60.910 60.000 0.00 0.00 33.68 4.02
1236 1370 0.250513 GAGGTGGAGGACATGGTCAC 59.749 60.000 0.00 0.00 33.68 3.67
1237 1371 1.201429 AGGTGGAGGACATGGTCACC 61.201 60.000 13.57 13.57 45.86 4.02
1238 1372 1.488705 GGTGGAGGACATGGTCACCA 61.489 60.000 0.00 0.00 45.11 4.17
1239 1373 0.620556 GTGGAGGACATGGTCACCAT 59.379 55.000 2.35 2.35 46.37 3.55
1248 1382 1.668826 ATGGTCACCATGTGTACCCT 58.331 50.000 9.13 0.00 43.39 4.34
1249 1383 0.981183 TGGTCACCATGTGTACCCTC 59.019 55.000 0.00 0.00 34.92 4.30
1250 1384 0.252197 GGTCACCATGTGTACCCTCC 59.748 60.000 0.00 0.00 34.79 4.30
1251 1385 0.252197 GTCACCATGTGTACCCTCCC 59.748 60.000 0.00 0.00 34.79 4.30
1252 1386 0.912487 TCACCATGTGTACCCTCCCC 60.912 60.000 0.00 0.00 34.79 4.81
1253 1387 0.914417 CACCATGTGTACCCTCCCCT 60.914 60.000 0.00 0.00 0.00 4.79
1254 1388 0.620700 ACCATGTGTACCCTCCCCTC 60.621 60.000 0.00 0.00 0.00 4.30
1255 1389 1.345715 CCATGTGTACCCTCCCCTCC 61.346 65.000 0.00 0.00 0.00 4.30
1256 1390 0.620410 CATGTGTACCCTCCCCTCCA 60.620 60.000 0.00 0.00 0.00 3.86
1257 1391 0.620700 ATGTGTACCCTCCCCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
1258 1392 2.038329 TGTACCCTCCCCTCCACG 59.962 66.667 0.00 0.00 0.00 4.94
1259 1393 3.468140 GTACCCTCCCCTCCACGC 61.468 72.222 0.00 0.00 0.00 5.34
1260 1394 4.791069 TACCCTCCCCTCCACGCC 62.791 72.222 0.00 0.00 0.00 5.68
1263 1397 3.787001 CCTCCCCTCCACGCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
1264 1398 3.787001 CTCCCCTCCACGCCTTCC 61.787 72.222 0.00 0.00 0.00 3.46
1268 1402 4.016706 CCTCCACGCCTTCCCGTT 62.017 66.667 0.00 0.00 39.83 4.44
1269 1403 2.434359 CTCCACGCCTTCCCGTTC 60.434 66.667 0.00 0.00 39.83 3.95
1270 1404 4.367023 TCCACGCCTTCCCGTTCG 62.367 66.667 0.00 0.00 39.83 3.95
1300 1434 2.692741 CCTCCCCCAGACCCCTTC 60.693 72.222 0.00 0.00 0.00 3.46
1301 1435 2.692741 CTCCCCCAGACCCCTTCC 60.693 72.222 0.00 0.00 0.00 3.46
1302 1436 3.216371 TCCCCCAGACCCCTTCCT 61.216 66.667 0.00 0.00 0.00 3.36
1303 1437 3.017581 CCCCCAGACCCCTTCCTG 61.018 72.222 0.00 0.00 0.00 3.86
1327 1461 4.436653 GACGACAACGACGAGGAG 57.563 61.111 0.00 0.00 42.66 3.69
1328 1462 1.154263 GACGACAACGACGAGGAGG 60.154 63.158 0.00 0.00 42.66 4.30
1329 1463 1.849976 GACGACAACGACGAGGAGGT 61.850 60.000 0.00 0.00 42.66 3.85
1330 1464 1.154263 CGACAACGACGAGGAGGTC 60.154 63.158 0.00 0.73 42.66 3.85
1331 1465 1.575576 CGACAACGACGAGGAGGTCT 61.576 60.000 0.00 0.00 42.66 3.85
1332 1466 0.597072 GACAACGACGAGGAGGTCTT 59.403 55.000 0.00 0.00 34.75 3.01
1333 1467 0.314302 ACAACGACGAGGAGGTCTTG 59.686 55.000 0.00 0.00 34.75 3.02
1334 1468 0.314302 CAACGACGAGGAGGTCTTGT 59.686 55.000 0.00 0.00 42.62 3.16
1337 1471 1.507174 GACGAGGAGGTCTTGTCCG 59.493 63.158 0.00 0.00 46.47 4.79
1338 1472 0.959372 GACGAGGAGGTCTTGTCCGA 60.959 60.000 0.00 0.00 46.47 4.55
1339 1473 0.323542 ACGAGGAGGTCTTGTCCGAT 60.324 55.000 0.00 0.00 39.30 4.18
1340 1474 0.382515 CGAGGAGGTCTTGTCCGATC 59.617 60.000 0.00 0.00 39.30 3.69
1341 1475 1.770294 GAGGAGGTCTTGTCCGATCT 58.230 55.000 0.00 0.00 39.30 2.75
1342 1476 1.679153 GAGGAGGTCTTGTCCGATCTC 59.321 57.143 0.00 0.00 39.83 2.75
1344 1478 0.747852 GAGGTCTTGTCCGATCTCCC 59.252 60.000 0.00 0.00 35.57 4.30
1345 1479 0.688087 AGGTCTTGTCCGATCTCCCC 60.688 60.000 0.00 0.00 0.00 4.81
1346 1480 1.687297 GGTCTTGTCCGATCTCCCCC 61.687 65.000 0.00 0.00 0.00 5.40
1347 1481 0.976073 GTCTTGTCCGATCTCCCCCA 60.976 60.000 0.00 0.00 0.00 4.96
1348 1482 0.687757 TCTTGTCCGATCTCCCCCAG 60.688 60.000 0.00 0.00 0.00 4.45
1349 1483 2.317149 CTTGTCCGATCTCCCCCAGC 62.317 65.000 0.00 0.00 0.00 4.85
1350 1484 2.764128 GTCCGATCTCCCCCAGCA 60.764 66.667 0.00 0.00 0.00 4.41
1351 1485 2.444706 TCCGATCTCCCCCAGCAG 60.445 66.667 0.00 0.00 0.00 4.24
1352 1486 4.247380 CCGATCTCCCCCAGCAGC 62.247 72.222 0.00 0.00 0.00 5.25
1353 1487 3.473647 CGATCTCCCCCAGCAGCA 61.474 66.667 0.00 0.00 0.00 4.41
1354 1488 2.509916 GATCTCCCCCAGCAGCAG 59.490 66.667 0.00 0.00 0.00 4.24
1355 1489 3.771110 GATCTCCCCCAGCAGCAGC 62.771 68.421 0.00 0.00 42.56 5.25
1357 1491 4.798344 CTCCCCCAGCAGCAGCAG 62.798 72.222 3.17 0.00 45.49 4.24
1366 1500 3.128188 CAGCAGCAGCAGCAGGAG 61.128 66.667 12.92 0.00 45.49 3.69
1367 1501 4.411981 AGCAGCAGCAGCAGGAGG 62.412 66.667 12.92 0.00 45.49 4.30
1456 1590 3.330720 CCTCCTTCCCCGCAACCT 61.331 66.667 0.00 0.00 0.00 3.50
1480 1614 4.681978 AAGCCGAGGGTGTGCGTC 62.682 66.667 0.00 0.00 0.00 5.19
1489 1623 1.668151 GGTGTGCGTCAGGAAGGTC 60.668 63.158 0.00 0.00 0.00 3.85
1495 1629 1.592223 CGTCAGGAAGGTCAGGGTC 59.408 63.158 0.00 0.00 0.00 4.46
1549 1683 4.814294 GACCTACCGCCGGCAGTG 62.814 72.222 28.98 16.72 0.00 3.66
1565 1699 4.648626 TGGAGCCACAGCCACAGC 62.649 66.667 0.00 0.00 41.25 4.40
1567 1701 4.648626 GAGCCACAGCCACAGCCA 62.649 66.667 0.00 0.00 41.25 4.75
1568 1702 4.655647 AGCCACAGCCACAGCCAG 62.656 66.667 0.00 0.00 41.25 4.85
1573 1707 4.980702 CAGCCACAGCCAGCCCAA 62.981 66.667 0.00 0.00 41.25 4.12
1574 1708 4.982701 AGCCACAGCCAGCCCAAC 62.983 66.667 0.00 0.00 41.25 3.77
1577 1711 4.641645 CACAGCCAGCCCAACCGA 62.642 66.667 0.00 0.00 0.00 4.69
1578 1712 4.643387 ACAGCCAGCCCAACCGAC 62.643 66.667 0.00 0.00 0.00 4.79
1579 1713 4.641645 CAGCCAGCCCAACCGACA 62.642 66.667 0.00 0.00 0.00 4.35
1580 1714 4.335647 AGCCAGCCCAACCGACAG 62.336 66.667 0.00 0.00 0.00 3.51
1709 1849 0.248498 CAGCAGCAATGAGAATGCCG 60.248 55.000 0.00 0.00 44.91 5.69
1711 1851 0.248377 GCAGCAATGAGAATGCCGTC 60.248 55.000 0.00 0.00 44.91 4.79
1772 1930 4.039092 CACCCACCAGCCAGGAGG 62.039 72.222 0.00 1.00 46.82 4.30
1821 1979 4.100963 TCAGTCAGTCAGGTACACAACAAT 59.899 41.667 0.00 0.00 0.00 2.71
1828 1986 4.393062 GTCAGGTACACAACAATGGAGATG 59.607 45.833 0.00 0.00 0.00 2.90
1829 1987 3.691118 CAGGTACACAACAATGGAGATGG 59.309 47.826 0.00 0.00 0.00 3.51
1831 1989 4.228210 AGGTACACAACAATGGAGATGGAT 59.772 41.667 0.00 0.00 0.00 3.41
1832 1990 4.336433 GGTACACAACAATGGAGATGGATG 59.664 45.833 0.00 0.00 0.00 3.51
1833 1991 2.756760 ACACAACAATGGAGATGGATGC 59.243 45.455 0.00 0.00 0.00 3.91
1835 1993 2.756760 ACAACAATGGAGATGGATGCAC 59.243 45.455 0.00 0.00 0.00 4.57
1836 1994 3.021695 CAACAATGGAGATGGATGCACT 58.978 45.455 0.00 0.00 0.00 4.40
1845 2003 3.607741 AGATGGATGCACTGACAAGAAG 58.392 45.455 0.00 0.00 0.00 2.85
1882 2068 0.681887 TGGCCATGGCATTCAGTCAG 60.682 55.000 36.56 0.00 44.11 3.51
1883 2069 0.682209 GGCCATGGCATTCAGTCAGT 60.682 55.000 36.56 0.00 44.11 3.41
1884 2070 0.737219 GCCATGGCATTCAGTCAGTC 59.263 55.000 32.08 0.00 41.49 3.51
1885 2071 1.951895 GCCATGGCATTCAGTCAGTCA 60.952 52.381 32.08 0.00 41.49 3.41
1895 2081 3.037851 TCAGTCAGTCATGCCTAGGAT 57.962 47.619 14.75 0.00 0.00 3.24
1896 2082 3.378512 TCAGTCAGTCATGCCTAGGATT 58.621 45.455 14.75 0.00 0.00 3.01
1900 2086 5.245751 CAGTCAGTCATGCCTAGGATTAGAT 59.754 44.000 14.75 0.00 0.00 1.98
1910 2104 8.492782 CATGCCTAGGATTAGATTGGATTAGAT 58.507 37.037 14.75 0.00 0.00 1.98
1934 2128 2.065993 TTACAGCAACTCAGACGCTC 57.934 50.000 0.00 0.00 32.48 5.03
1935 2129 1.248486 TACAGCAACTCAGACGCTCT 58.752 50.000 0.00 0.00 32.48 4.09
1937 2131 0.243365 CAGCAACTCAGACGCTCTCT 59.757 55.000 0.00 0.00 32.48 3.10
1938 2132 0.965439 AGCAACTCAGACGCTCTCTT 59.035 50.000 0.00 0.00 0.00 2.85
1939 2133 1.066914 GCAACTCAGACGCTCTCTTG 58.933 55.000 0.00 0.00 0.00 3.02
1940 2134 1.604185 GCAACTCAGACGCTCTCTTGT 60.604 52.381 0.00 0.00 0.00 3.16
1941 2135 2.323959 CAACTCAGACGCTCTCTTGTC 58.676 52.381 0.00 0.00 35.33 3.18
1942 2136 1.904287 ACTCAGACGCTCTCTTGTCT 58.096 50.000 0.00 0.00 45.98 3.41
1943 2137 2.235016 ACTCAGACGCTCTCTTGTCTT 58.765 47.619 0.00 0.00 42.61 3.01
1992 2190 1.226542 CCTGGCTGATGCTCCATGT 59.773 57.895 0.00 0.00 39.59 3.21
2007 2774 5.300539 TGCTCCATGTAATGTACTCTCTCTC 59.699 44.000 0.00 0.00 44.81 3.20
2008 2775 5.278758 GCTCCATGTAATGTACTCTCTCTCC 60.279 48.000 0.00 0.00 44.81 3.71
2009 2776 4.822350 TCCATGTAATGTACTCTCTCTCCG 59.178 45.833 0.00 0.00 44.81 4.63
2010 2777 4.580995 CCATGTAATGTACTCTCTCTCCGT 59.419 45.833 0.00 0.00 44.81 4.69
2011 2778 5.278071 CCATGTAATGTACTCTCTCTCCGTC 60.278 48.000 0.00 0.00 44.81 4.79
2014 2781 0.989602 TGTACTCTCTCTCCGTCCCA 59.010 55.000 0.00 0.00 0.00 4.37
2016 2783 2.775960 TGTACTCTCTCTCCGTCCCATA 59.224 50.000 0.00 0.00 0.00 2.74
2017 2784 3.201487 TGTACTCTCTCTCCGTCCCATAA 59.799 47.826 0.00 0.00 0.00 1.90
2018 2785 3.603965 ACTCTCTCTCCGTCCCATAAT 57.396 47.619 0.00 0.00 0.00 1.28
2021 2788 4.141228 ACTCTCTCTCCGTCCCATAATGTA 60.141 45.833 0.00 0.00 0.00 2.29
2023 2790 4.583489 TCTCTCTCCGTCCCATAATGTAAC 59.417 45.833 0.00 0.00 0.00 2.50
2024 2791 4.283337 TCTCTCCGTCCCATAATGTAACA 58.717 43.478 0.00 0.00 0.00 2.41
2026 2793 4.956085 TCTCCGTCCCATAATGTAACATG 58.044 43.478 0.00 0.00 0.00 3.21
2027 2794 4.407621 TCTCCGTCCCATAATGTAACATGT 59.592 41.667 0.00 0.00 0.00 3.21
2030 2797 4.638421 CCGTCCCATAATGTAACATGTTGT 59.362 41.667 21.42 4.33 0.00 3.32
2031 2798 5.124776 CCGTCCCATAATGTAACATGTTGTT 59.875 40.000 21.42 14.41 43.88 2.83
2032 2799 6.349777 CCGTCCCATAATGTAACATGTTGTTT 60.350 38.462 21.42 13.15 41.45 2.83
2043 2856 7.690228 TGTAACATGTTGTTTCACACTACTTC 58.310 34.615 21.42 0.00 41.45 3.01
2046 2859 7.016361 ACATGTTGTTTCACACTACTTCTTC 57.984 36.000 0.00 0.00 32.76 2.87
2047 2860 6.597672 ACATGTTGTTTCACACTACTTCTTCA 59.402 34.615 0.00 0.00 32.76 3.02
2048 2861 6.662414 TGTTGTTTCACACTACTTCTTCAG 57.338 37.500 0.00 0.00 32.76 3.02
2049 2862 6.403049 TGTTGTTTCACACTACTTCTTCAGA 58.597 36.000 0.00 0.00 32.76 3.27
2050 2863 6.312918 TGTTGTTTCACACTACTTCTTCAGAC 59.687 38.462 0.00 0.00 32.76 3.51
2051 2864 5.972935 TGTTTCACACTACTTCTTCAGACA 58.027 37.500 0.00 0.00 0.00 3.41
2055 2885 7.482654 TTCACACTACTTCTTCAGACAAATG 57.517 36.000 0.00 0.00 0.00 2.32
2064 2894 6.995091 ACTTCTTCAGACAAATGCTACTTCTT 59.005 34.615 0.00 0.00 0.00 2.52
2217 3672 6.360618 AGTGACATTTCAACTCCTTTCTTCT 58.639 36.000 0.00 0.00 31.90 2.85
2226 3681 2.826725 ACTCCTTTCTTCTCGGTCGAAT 59.173 45.455 0.00 0.00 0.00 3.34
2244 3699 2.949451 ATCAACACTGCCTCGACTAG 57.051 50.000 0.00 0.00 0.00 2.57
2263 3718 0.172578 GGAAAAGGCCCGTGCAATAC 59.827 55.000 0.00 0.00 40.13 1.89
2461 3916 1.953138 CGCGATGTGCCTCCAGATC 60.953 63.158 0.00 0.00 42.08 2.75
2462 3917 1.445095 GCGATGTGCCTCCAGATCT 59.555 57.895 0.00 0.00 39.05 2.75
2463 3918 0.179062 GCGATGTGCCTCCAGATCTT 60.179 55.000 0.00 0.00 39.05 2.40
2464 3919 1.863267 CGATGTGCCTCCAGATCTTC 58.137 55.000 0.00 0.00 39.05 2.87
2465 3920 1.863267 GATGTGCCTCCAGATCTTCG 58.137 55.000 0.00 0.00 38.38 3.79
2466 3921 0.179062 ATGTGCCTCCAGATCTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
2467 3922 1.880340 GTGCCTCCAGATCTTCGCG 60.880 63.158 0.00 0.00 0.00 5.87
2468 3923 2.351244 TGCCTCCAGATCTTCGCGT 61.351 57.895 5.77 0.00 0.00 6.01
2469 3924 1.590259 GCCTCCAGATCTTCGCGTC 60.590 63.158 5.77 0.00 0.00 5.19
2470 3925 1.298713 CCTCCAGATCTTCGCGTCG 60.299 63.158 5.77 0.00 0.00 5.12
2471 3926 1.298713 CTCCAGATCTTCGCGTCGG 60.299 63.158 5.77 2.66 0.00 4.79
2472 3927 2.956964 CCAGATCTTCGCGTCGGC 60.957 66.667 5.77 0.00 0.00 5.54
2473 3928 2.202610 CAGATCTTCGCGTCGGCA 60.203 61.111 5.77 0.00 39.92 5.69
2474 3929 2.202623 AGATCTTCGCGTCGGCAC 60.203 61.111 5.77 0.00 39.92 5.01
2524 3979 2.147387 AGTGCCGTGGAAAGGACCT 61.147 57.895 0.00 0.00 37.88 3.85
2526 3981 1.228124 TGCCGTGGAAAGGACCTTG 60.228 57.895 7.72 0.00 37.88 3.61
2529 3984 2.954611 GTGGAAAGGACCTTGCGC 59.045 61.111 7.72 0.00 0.00 6.09
2575 4030 1.482621 GATGCGTGCATCGATGTCGT 61.483 55.000 29.70 19.45 42.55 4.34
2576 4031 1.083806 ATGCGTGCATCGATGTCGTT 61.084 50.000 29.70 21.08 42.86 3.85
2577 4032 1.288419 TGCGTGCATCGATGTCGTTT 61.288 50.000 29.70 0.00 42.86 3.60
2583 4038 0.096976 CATCGATGTCGTTTGGGTGC 59.903 55.000 17.50 0.00 40.80 5.01
2604 4060 3.066190 CGTCCTGCCGGTGTCCTA 61.066 66.667 1.90 0.00 0.00 2.94
2609 4065 0.757188 CCTGCCGGTGTCCTAGATCT 60.757 60.000 1.90 0.00 0.00 2.75
2758 4215 3.758931 TCGGCGCTGCTGCTTCTA 61.759 61.111 12.58 0.00 34.49 2.10
2773 4230 1.643868 TTCTAAATGGCGCGGTGCTG 61.644 55.000 13.85 0.00 45.43 4.41
2837 4294 2.111878 CAGATGGGATGGCCGGTC 59.888 66.667 0.00 0.00 33.83 4.79
2906 4363 2.278206 CCGGAGTCATCGACAGCG 60.278 66.667 0.00 0.00 34.60 5.18
2936 4393 3.608506 CAGACGTCGTATTCTTGTTGGAG 59.391 47.826 10.46 0.00 0.00 3.86
2951 4408 0.111061 TGGAGGCTTTGATGTGCAGT 59.889 50.000 0.00 0.00 0.00 4.40
2959 4416 2.408271 TTGATGTGCAGTCCTCATCC 57.592 50.000 10.69 0.00 41.51 3.51
2960 4417 1.576577 TGATGTGCAGTCCTCATCCT 58.423 50.000 10.69 0.00 41.51 3.24
2961 4418 1.483827 TGATGTGCAGTCCTCATCCTC 59.516 52.381 10.69 0.00 41.51 3.71
2962 4419 0.835941 ATGTGCAGTCCTCATCCTCC 59.164 55.000 0.00 0.00 0.00 4.30
2963 4420 0.252421 TGTGCAGTCCTCATCCTCCT 60.252 55.000 0.00 0.00 0.00 3.69
2964 4421 0.908198 GTGCAGTCCTCATCCTCCTT 59.092 55.000 0.00 0.00 0.00 3.36
2965 4422 1.280421 GTGCAGTCCTCATCCTCCTTT 59.720 52.381 0.00 0.00 0.00 3.11
2966 4423 1.556911 TGCAGTCCTCATCCTCCTTTC 59.443 52.381 0.00 0.00 0.00 2.62
2967 4424 1.134250 GCAGTCCTCATCCTCCTTTCC 60.134 57.143 0.00 0.00 0.00 3.13
2968 4425 2.191400 CAGTCCTCATCCTCCTTTCCA 58.809 52.381 0.00 0.00 0.00 3.53
2969 4426 2.776536 CAGTCCTCATCCTCCTTTCCAT 59.223 50.000 0.00 0.00 0.00 3.41
2970 4427 3.044894 AGTCCTCATCCTCCTTTCCATC 58.955 50.000 0.00 0.00 0.00 3.51
2971 4428 2.774234 GTCCTCATCCTCCTTTCCATCA 59.226 50.000 0.00 0.00 0.00 3.07
2972 4429 2.774234 TCCTCATCCTCCTTTCCATCAC 59.226 50.000 0.00 0.00 0.00 3.06
2973 4430 2.484417 CCTCATCCTCCTTTCCATCACG 60.484 54.545 0.00 0.00 0.00 4.35
2974 4431 1.134401 TCATCCTCCTTTCCATCACGC 60.134 52.381 0.00 0.00 0.00 5.34
2975 4432 1.134280 CATCCTCCTTTCCATCACGCT 60.134 52.381 0.00 0.00 0.00 5.07
2976 4433 0.537188 TCCTCCTTTCCATCACGCTC 59.463 55.000 0.00 0.00 0.00 5.03
2977 4434 0.462759 CCTCCTTTCCATCACGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
2978 4435 0.807667 CTCCTTTCCATCACGCTCCG 60.808 60.000 0.00 0.00 0.00 4.63
2979 4436 1.815421 CCTTTCCATCACGCTCCGG 60.815 63.158 0.00 0.00 0.00 5.14
2980 4437 1.815421 CTTTCCATCACGCTCCGGG 60.815 63.158 0.00 0.00 0.00 5.73
2981 4438 3.323758 TTTCCATCACGCTCCGGGG 62.324 63.158 0.00 0.00 0.00 5.73
2984 4441 3.781307 CATCACGCTCCGGGGGAA 61.781 66.667 1.90 0.00 0.00 3.97
2985 4442 3.006728 ATCACGCTCCGGGGGAAA 61.007 61.111 1.90 0.00 0.00 3.13
2986 4443 3.325201 ATCACGCTCCGGGGGAAAC 62.325 63.158 1.90 0.00 0.00 2.78
3002 4459 4.409718 GGAAACCCTAGATCTGGTCTTC 57.590 50.000 5.18 10.78 38.42 2.87
3003 4460 4.034410 GGAAACCCTAGATCTGGTCTTCT 58.966 47.826 5.18 0.00 38.42 2.85
3004 4461 4.141824 GGAAACCCTAGATCTGGTCTTCTG 60.142 50.000 5.18 0.00 38.42 3.02
3005 4462 3.039252 ACCCTAGATCTGGTCTTCTGG 57.961 52.381 5.18 0.17 38.42 3.86
3006 4463 2.587777 ACCCTAGATCTGGTCTTCTGGA 59.412 50.000 5.18 0.00 38.42 3.86
3007 4464 3.208692 ACCCTAGATCTGGTCTTCTGGAT 59.791 47.826 5.18 0.00 38.42 3.41
3008 4465 3.831911 CCCTAGATCTGGTCTTCTGGATC 59.168 52.174 5.18 0.00 38.42 3.36
3009 4466 3.505680 CCTAGATCTGGTCTTCTGGATCG 59.494 52.174 5.18 0.00 39.39 3.69
3010 4467 2.315176 AGATCTGGTCTTCTGGATCGG 58.685 52.381 0.00 0.00 39.39 4.18
3011 4468 2.091610 AGATCTGGTCTTCTGGATCGGA 60.092 50.000 0.00 0.00 43.75 4.55
3012 4469 1.475403 TCTGGTCTTCTGGATCGGAC 58.525 55.000 0.00 0.00 35.68 4.79
3013 4470 1.186200 CTGGTCTTCTGGATCGGACA 58.814 55.000 0.00 0.00 33.37 4.02
3014 4471 1.135915 CTGGTCTTCTGGATCGGACAG 59.864 57.143 0.00 0.00 33.37 3.51
3015 4472 1.187087 GGTCTTCTGGATCGGACAGT 58.813 55.000 0.00 0.00 37.25 3.55
3016 4473 1.134965 GGTCTTCTGGATCGGACAGTG 60.135 57.143 0.00 0.00 37.25 3.66
3017 4474 1.819288 GTCTTCTGGATCGGACAGTGA 59.181 52.381 0.00 0.00 37.25 3.41
3018 4475 2.428890 GTCTTCTGGATCGGACAGTGAT 59.571 50.000 0.00 0.00 37.25 3.06
3019 4476 2.428530 TCTTCTGGATCGGACAGTGATG 59.571 50.000 0.00 0.00 37.25 3.07
3020 4477 2.143876 TCTGGATCGGACAGTGATGA 57.856 50.000 0.00 0.00 37.25 2.92
3021 4478 2.456577 TCTGGATCGGACAGTGATGAA 58.543 47.619 0.00 0.00 37.25 2.57
3022 4479 2.428530 TCTGGATCGGACAGTGATGAAG 59.571 50.000 0.00 0.00 37.25 3.02
3023 4480 1.134699 TGGATCGGACAGTGATGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
3024 4481 1.137872 GGATCGGACAGTGATGAAGCT 59.862 52.381 0.00 0.00 0.00 3.74
3025 4482 2.419297 GGATCGGACAGTGATGAAGCTT 60.419 50.000 0.00 0.00 0.00 3.74
3026 4483 3.181475 GGATCGGACAGTGATGAAGCTTA 60.181 47.826 0.00 0.00 0.00 3.09
3027 4484 3.510388 TCGGACAGTGATGAAGCTTAG 57.490 47.619 0.00 0.00 0.00 2.18
3028 4485 3.089284 TCGGACAGTGATGAAGCTTAGA 58.911 45.455 0.00 0.00 0.00 2.10
3029 4486 3.129462 TCGGACAGTGATGAAGCTTAGAG 59.871 47.826 0.00 0.00 0.00 2.43
3063 4520 2.424956 GGCATTGTCTTGGAGTTGGATC 59.575 50.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.783979 GGAGGAGGGTCTATCTGGAGA 59.216 57.143 0.00 0.00 0.00 3.71
1 2 1.786441 AGGAGGAGGGTCTATCTGGAG 59.214 57.143 0.00 0.00 0.00 3.86
2 3 1.928480 AGGAGGAGGGTCTATCTGGA 58.072 55.000 0.00 0.00 0.00 3.86
3 4 2.091055 TCAAGGAGGAGGGTCTATCTGG 60.091 54.545 0.00 0.00 0.00 3.86
4 5 2.962421 GTCAAGGAGGAGGGTCTATCTG 59.038 54.545 0.00 0.00 0.00 2.90
5 6 2.587777 TGTCAAGGAGGAGGGTCTATCT 59.412 50.000 0.00 0.00 0.00 1.98
6 7 3.033659 TGTCAAGGAGGAGGGTCTATC 57.966 52.381 0.00 0.00 0.00 2.08
7 8 3.713764 CAATGTCAAGGAGGAGGGTCTAT 59.286 47.826 0.00 0.00 0.00 1.98
8 9 3.107601 CAATGTCAAGGAGGAGGGTCTA 58.892 50.000 0.00 0.00 0.00 2.59
9 10 1.912043 CAATGTCAAGGAGGAGGGTCT 59.088 52.381 0.00 0.00 0.00 3.85
10 11 1.909302 TCAATGTCAAGGAGGAGGGTC 59.091 52.381 0.00 0.00 0.00 4.46
11 12 1.630878 GTCAATGTCAAGGAGGAGGGT 59.369 52.381 0.00 0.00 0.00 4.34
12 13 1.406069 CGTCAATGTCAAGGAGGAGGG 60.406 57.143 0.00 0.00 0.00 4.30
13 14 1.550524 TCGTCAATGTCAAGGAGGAGG 59.449 52.381 0.00 0.00 0.00 4.30
14 15 3.131933 AGATCGTCAATGTCAAGGAGGAG 59.868 47.826 5.93 0.00 0.00 3.69
15 16 3.099905 AGATCGTCAATGTCAAGGAGGA 58.900 45.455 3.06 3.06 0.00 3.71
16 17 3.533606 AGATCGTCAATGTCAAGGAGG 57.466 47.619 0.00 0.00 0.00 4.30
17 18 4.931601 TGAAAGATCGTCAATGTCAAGGAG 59.068 41.667 0.14 0.00 0.00 3.69
18 19 4.893608 TGAAAGATCGTCAATGTCAAGGA 58.106 39.130 0.14 0.00 0.00 3.36
19 20 4.931601 TCTGAAAGATCGTCAATGTCAAGG 59.068 41.667 4.06 0.00 38.67 3.61
34 35 1.372997 GCACGGCGAGTCTGAAAGA 60.373 57.895 16.62 0.00 43.69 2.52
35 36 2.383527 GGCACGGCGAGTCTGAAAG 61.384 63.158 16.62 0.00 0.00 2.62
36 37 1.529152 TAGGCACGGCGAGTCTGAAA 61.529 55.000 21.39 0.00 0.00 2.69
37 38 1.320344 ATAGGCACGGCGAGTCTGAA 61.320 55.000 21.39 2.53 0.00 3.02
38 39 1.753078 ATAGGCACGGCGAGTCTGA 60.753 57.895 21.39 6.18 0.00 3.27
39 40 1.589993 CATAGGCACGGCGAGTCTG 60.590 63.158 21.39 6.27 0.00 3.51
40 41 2.808315 CATAGGCACGGCGAGTCT 59.192 61.111 16.78 16.78 0.00 3.24
41 42 2.962253 GCATAGGCACGGCGAGTC 60.962 66.667 16.62 7.61 40.72 3.36
42 43 4.530857 GGCATAGGCACGGCGAGT 62.531 66.667 16.62 0.00 43.71 4.18
43 44 4.529219 TGGCATAGGCACGGCGAG 62.529 66.667 16.62 7.03 43.71 5.03
44 45 4.089239 TTGGCATAGGCACGGCGA 62.089 61.111 16.62 0.00 43.71 5.54
45 46 3.576356 CTTGGCATAGGCACGGCG 61.576 66.667 4.80 4.80 43.71 6.46
46 47 2.438434 ACTTGGCATAGGCACGGC 60.438 61.111 0.15 0.00 43.71 5.68
47 48 2.114670 CCACTTGGCATAGGCACGG 61.115 63.158 0.15 0.00 43.71 4.94
48 49 1.377202 ACCACTTGGCATAGGCACG 60.377 57.895 0.15 0.00 43.71 5.34
49 50 1.315257 CCACCACTTGGCATAGGCAC 61.315 60.000 0.15 0.00 43.71 5.01
50 51 1.001020 CCACCACTTGGCATAGGCA 60.001 57.895 0.15 0.00 43.71 4.75
51 52 3.924507 CCACCACTTGGCATAGGC 58.075 61.111 0.00 0.00 39.07 3.93
59 60 1.077068 ACACCACCACCACCACTTG 60.077 57.895 0.00 0.00 0.00 3.16
60 61 1.226262 GACACCACCACCACCACTT 59.774 57.895 0.00 0.00 0.00 3.16
61 62 2.752807 GGACACCACCACCACCACT 61.753 63.158 0.00 0.00 0.00 4.00
62 63 2.203294 GGACACCACCACCACCAC 60.203 66.667 0.00 0.00 0.00 4.16
63 64 2.367648 AGGACACCACCACCACCA 60.368 61.111 0.00 0.00 0.00 4.17
64 65 2.147387 AGAGGACACCACCACCACC 61.147 63.158 0.00 0.00 0.00 4.61
65 66 1.071471 CAGAGGACACCACCACCAC 59.929 63.158 0.00 0.00 0.00 4.16
66 67 2.146724 CCAGAGGACACCACCACCA 61.147 63.158 0.00 0.00 0.00 4.17
67 68 2.750350 CCAGAGGACACCACCACC 59.250 66.667 0.00 0.00 0.00 4.61
68 69 2.750350 CCCAGAGGACACCACCAC 59.250 66.667 0.00 0.00 33.47 4.16
69 70 2.529136 CCCCAGAGGACACCACCA 60.529 66.667 0.00 0.00 38.24 4.17
70 71 2.203938 TCCCCAGAGGACACCACC 60.204 66.667 0.00 0.00 40.93 4.61
71 72 1.536662 ACTCCCCAGAGGACACCAC 60.537 63.158 0.00 0.00 45.11 4.16
72 73 1.229209 GACTCCCCAGAGGACACCA 60.229 63.158 0.00 0.00 45.11 4.17
73 74 2.352032 CGACTCCCCAGAGGACACC 61.352 68.421 0.00 0.00 45.11 4.16
74 75 3.007973 GCGACTCCCCAGAGGACAC 62.008 68.421 0.00 0.00 45.11 3.67
75 76 2.680352 GCGACTCCCCAGAGGACA 60.680 66.667 0.00 0.00 45.11 4.02
76 77 2.363147 AGCGACTCCCCAGAGGAC 60.363 66.667 0.00 0.00 45.11 3.85
77 78 2.363018 CAGCGACTCCCCAGAGGA 60.363 66.667 0.00 0.00 45.11 3.71
78 79 2.681778 ACAGCGACTCCCCAGAGG 60.682 66.667 0.00 0.00 45.11 3.69
79 80 2.888863 GACAGCGACTCCCCAGAG 59.111 66.667 0.00 0.00 46.36 3.35
80 81 3.062466 CGACAGCGACTCCCCAGA 61.062 66.667 0.00 0.00 40.82 3.86
81 82 4.803426 GCGACAGCGACTCCCCAG 62.803 72.222 0.00 0.00 40.82 4.45
91 92 2.047844 TTCAGCCAGAGCGACAGC 60.048 61.111 0.00 0.00 46.67 4.40
104 105 2.624838 ACATTGAACAAGGGCACTTCAG 59.375 45.455 0.00 0.00 33.81 3.02
105 106 2.622942 GACATTGAACAAGGGCACTTCA 59.377 45.455 0.00 0.00 33.81 3.02
121 122 0.516877 CACGCCATGACAACGACATT 59.483 50.000 0.00 0.00 0.00 2.71
233 234 3.092780 GCTCCTGCCTCTCCTGCTC 62.093 68.421 0.00 0.00 0.00 4.26
256 257 3.139850 CTGCCATGTCATCTCCAAGATC 58.860 50.000 0.00 0.00 31.32 2.75
268 269 3.857854 CGCTGCGTCTGCCATGTC 61.858 66.667 14.93 0.00 41.78 3.06
276 277 2.969238 GCATATGCCGCTGCGTCT 60.969 61.111 21.59 7.35 41.78 4.18
302 303 2.159824 TGCTCTTCTTCTACGTCGTCTG 59.840 50.000 0.00 0.00 0.00 3.51
322 323 1.399440 GTACACATGGATGCAGTGCTG 59.601 52.381 17.60 8.24 36.76 4.41
335 336 8.797438 CATAGTAGGAGTATCACATGTACACAT 58.203 37.037 0.00 0.00 36.25 3.21
337 338 8.167605 ACATAGTAGGAGTATCACATGTACAC 57.832 38.462 0.00 0.00 36.25 2.90
338 339 9.856162 TTACATAGTAGGAGTATCACATGTACA 57.144 33.333 0.00 0.00 36.25 2.90
341 342 9.368416 ACATTACATAGTAGGAGTATCACATGT 57.632 33.333 0.00 0.00 36.25 3.21
345 346 9.843334 GCTTACATTACATAGTAGGAGTATCAC 57.157 37.037 0.00 0.00 36.25 3.06
348 349 8.524487 GCTGCTTACATTACATAGTAGGAGTAT 58.476 37.037 0.00 0.00 0.00 2.12
349 350 7.504574 TGCTGCTTACATTACATAGTAGGAGTA 59.495 37.037 0.00 0.00 0.00 2.59
350 351 6.323996 TGCTGCTTACATTACATAGTAGGAGT 59.676 38.462 0.00 0.00 0.00 3.85
351 352 6.749139 TGCTGCTTACATTACATAGTAGGAG 58.251 40.000 0.00 0.00 0.00 3.69
352 353 6.549736 TCTGCTGCTTACATTACATAGTAGGA 59.450 38.462 0.00 0.00 0.00 2.94
353 354 6.749139 TCTGCTGCTTACATTACATAGTAGG 58.251 40.000 0.00 0.00 0.00 3.18
354 355 7.652727 TCTCTGCTGCTTACATTACATAGTAG 58.347 38.462 0.00 0.00 0.00 2.57
355 356 7.582667 TCTCTGCTGCTTACATTACATAGTA 57.417 36.000 0.00 0.00 0.00 1.82
356 357 6.471233 TCTCTGCTGCTTACATTACATAGT 57.529 37.500 0.00 0.00 0.00 2.12
357 358 7.959689 AATCTCTGCTGCTTACATTACATAG 57.040 36.000 0.00 0.00 0.00 2.23
358 359 7.770433 ACAAATCTCTGCTGCTTACATTACATA 59.230 33.333 0.00 0.00 0.00 2.29
359 360 6.600822 ACAAATCTCTGCTGCTTACATTACAT 59.399 34.615 0.00 0.00 0.00 2.29
367 368 3.499537 CACACACAAATCTCTGCTGCTTA 59.500 43.478 0.00 0.00 0.00 3.09
378 379 4.882671 ACAACAGAGACACACACAAATC 57.117 40.909 0.00 0.00 0.00 2.17
484 516 2.913887 CGTCTTCTGCTACGTCGAC 58.086 57.895 5.18 5.18 34.48 4.20
553 585 1.255667 TACTGACCGCCAACCTCTCC 61.256 60.000 0.00 0.00 0.00 3.71
576 608 5.982890 TTCATTCATTGAGTTTCCCCTTC 57.017 39.130 0.00 0.00 35.27 3.46
577 609 6.018469 TCATTCATTCATTGAGTTTCCCCTT 58.982 36.000 0.00 0.00 35.27 3.95
579 611 5.920193 TCATTCATTCATTGAGTTTCCCC 57.080 39.130 0.00 0.00 35.27 4.81
581 613 8.991243 TTCATTCATTCATTCATTGAGTTTCC 57.009 30.769 0.00 0.00 35.27 3.13
663 706 1.704007 CCTCCTCTCCAAGCCCATCC 61.704 65.000 0.00 0.00 0.00 3.51
683 726 3.691342 CACCAAGGTCCTCGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
714 757 2.315386 GGGAACGTGTTGGAGTCGC 61.315 63.158 0.00 0.00 0.00 5.19
741 784 6.172630 AGAAGAAGAAGAAGAAGAATCAGGC 58.827 40.000 0.00 0.00 0.00 4.85
746 789 9.492973 CTGAAGAAGAAGAAGAAGAAGAAGAAT 57.507 33.333 0.00 0.00 0.00 2.40
747 790 8.482128 ACTGAAGAAGAAGAAGAAGAAGAAGAA 58.518 33.333 0.00 0.00 0.00 2.52
748 791 8.017418 ACTGAAGAAGAAGAAGAAGAAGAAGA 57.983 34.615 0.00 0.00 0.00 2.87
749 792 7.384932 GGACTGAAGAAGAAGAAGAAGAAGAAG 59.615 40.741 0.00 0.00 0.00 2.85
751 794 6.515862 CGGACTGAAGAAGAAGAAGAAGAAGA 60.516 42.308 0.00 0.00 0.00 2.87
752 795 5.633182 CGGACTGAAGAAGAAGAAGAAGAAG 59.367 44.000 0.00 0.00 0.00 2.85
753 796 5.069251 ACGGACTGAAGAAGAAGAAGAAGAA 59.931 40.000 0.00 0.00 0.00 2.52
754 797 4.585162 ACGGACTGAAGAAGAAGAAGAAGA 59.415 41.667 0.00 0.00 0.00 2.87
755 798 4.877282 ACGGACTGAAGAAGAAGAAGAAG 58.123 43.478 0.00 0.00 0.00 2.85
756 799 4.262079 GGACGGACTGAAGAAGAAGAAGAA 60.262 45.833 0.00 0.00 0.00 2.52
757 800 3.256136 GGACGGACTGAAGAAGAAGAAGA 59.744 47.826 0.00 0.00 0.00 2.87
758 801 3.580731 GGACGGACTGAAGAAGAAGAAG 58.419 50.000 0.00 0.00 0.00 2.85
759 802 2.299297 GGGACGGACTGAAGAAGAAGAA 59.701 50.000 0.00 0.00 0.00 2.52
760 803 1.893801 GGGACGGACTGAAGAAGAAGA 59.106 52.381 0.00 0.00 0.00 2.87
761 804 1.896465 AGGGACGGACTGAAGAAGAAG 59.104 52.381 0.00 0.00 0.00 2.85
764 807 0.247736 CCAGGGACGGACTGAAGAAG 59.752 60.000 5.05 0.00 38.20 2.85
765 808 1.827399 GCCAGGGACGGACTGAAGAA 61.827 60.000 5.05 0.00 38.20 2.52
766 809 2.283529 GCCAGGGACGGACTGAAGA 61.284 63.158 5.05 0.00 38.20 2.87
767 810 1.903877 ATGCCAGGGACGGACTGAAG 61.904 60.000 5.05 0.00 38.20 3.02
768 811 1.899437 GATGCCAGGGACGGACTGAA 61.899 60.000 5.05 0.00 38.20 3.02
769 812 2.284625 ATGCCAGGGACGGACTGA 60.285 61.111 5.05 0.00 38.20 3.41
770 813 2.187946 GATGCCAGGGACGGACTG 59.812 66.667 0.00 0.00 35.74 3.51
771 814 3.083997 GGATGCCAGGGACGGACT 61.084 66.667 0.00 0.00 0.00 3.85
772 815 4.530857 CGGATGCCAGGGACGGAC 62.531 72.222 0.00 0.00 0.00 4.79
775 818 4.552365 ATGCGGATGCCAGGGACG 62.552 66.667 0.00 0.00 41.78 4.79
776 819 2.592861 GATGCGGATGCCAGGGAC 60.593 66.667 0.00 0.00 41.78 4.46
777 820 3.877450 GGATGCGGATGCCAGGGA 61.877 66.667 0.00 0.00 41.78 4.20
778 821 4.193893 TGGATGCGGATGCCAGGG 62.194 66.667 5.87 0.00 41.78 4.45
780 823 3.274586 CGTGGATGCGGATGCCAG 61.275 66.667 5.87 0.00 41.78 4.85
798 841 2.511600 GTCCAGATTGGTCGGCGG 60.512 66.667 7.21 0.00 39.03 6.13
799 842 2.511600 GGTCCAGATTGGTCGGCG 60.512 66.667 0.00 0.00 39.03 6.46
800 843 1.450312 CAGGTCCAGATTGGTCGGC 60.450 63.158 0.00 0.00 39.03 5.54
801 844 1.221840 CCAGGTCCAGATTGGTCGG 59.778 63.158 0.00 0.00 39.03 4.79
802 845 0.176680 CTCCAGGTCCAGATTGGTCG 59.823 60.000 0.00 0.00 39.03 4.79
803 846 1.208293 GACTCCAGGTCCAGATTGGTC 59.792 57.143 0.00 0.00 39.03 4.02
804 847 1.280457 GACTCCAGGTCCAGATTGGT 58.720 55.000 0.00 0.00 39.03 3.67
814 857 1.229336 CCAGTCCAGGACTCCAGGT 60.229 63.158 20.30 0.00 41.37 4.00
815 858 0.975040 CTCCAGTCCAGGACTCCAGG 60.975 65.000 20.30 17.65 41.37 4.45
816 859 0.975040 CCTCCAGTCCAGGACTCCAG 60.975 65.000 20.30 16.75 41.37 3.86
817 860 1.079256 CCTCCAGTCCAGGACTCCA 59.921 63.158 20.30 7.95 41.37 3.86
818 861 0.031616 ATCCTCCAGTCCAGGACTCC 60.032 60.000 20.30 0.00 43.10 3.85
819 862 1.118838 CATCCTCCAGTCCAGGACTC 58.881 60.000 20.30 0.00 43.10 3.36
820 863 0.980231 GCATCCTCCAGTCCAGGACT 60.980 60.000 17.31 17.31 43.10 3.85
823 866 2.503061 CGCATCCTCCAGTCCAGG 59.497 66.667 0.00 0.00 0.00 4.45
824 867 2.202987 GCGCATCCTCCAGTCCAG 60.203 66.667 0.30 0.00 0.00 3.86
828 871 3.695606 ACACGCGCATCCTCCAGT 61.696 61.111 5.73 0.00 0.00 4.00
829 872 3.190849 CACACGCGCATCCTCCAG 61.191 66.667 5.73 0.00 0.00 3.86
830 873 4.002506 ACACACGCGCATCCTCCA 62.003 61.111 5.73 0.00 0.00 3.86
831 874 3.490759 CACACACGCGCATCCTCC 61.491 66.667 5.73 0.00 0.00 4.30
834 877 2.400896 AAAACCACACACGCGCATCC 62.401 55.000 5.73 0.00 0.00 3.51
835 878 1.008995 AAAACCACACACGCGCATC 60.009 52.632 5.73 0.00 0.00 3.91
836 879 1.299014 CAAAACCACACACGCGCAT 60.299 52.632 5.73 0.00 0.00 4.73
837 880 2.101185 CAAAACCACACACGCGCA 59.899 55.556 5.73 0.00 0.00 6.09
838 881 3.319316 GCAAAACCACACACGCGC 61.319 61.111 5.73 0.00 0.00 6.86
839 882 1.938814 CAGCAAAACCACACACGCG 60.939 57.895 3.53 3.53 0.00 6.01
841 884 1.588667 GGCAGCAAAACCACACACG 60.589 57.895 0.00 0.00 0.00 4.49
842 885 1.588667 CGGCAGCAAAACCACACAC 60.589 57.895 0.00 0.00 0.00 3.82
843 886 2.780094 CCGGCAGCAAAACCACACA 61.780 57.895 0.00 0.00 0.00 3.72
844 887 2.027460 CCGGCAGCAAAACCACAC 59.973 61.111 0.00 0.00 0.00 3.82
846 889 4.662961 GGCCGGCAGCAAAACCAC 62.663 66.667 30.85 1.84 46.50 4.16
875 918 3.408099 CTCTCTCCCTCTCCGGCGA 62.408 68.421 9.30 0.00 0.00 5.54
891 951 2.413765 CGGTTAGCGCCCTCTCTC 59.586 66.667 2.29 0.00 0.00 3.20
938 998 4.084118 CGGCTCTGTTTTGAGAAGAAGAAG 60.084 45.833 0.00 0.00 36.23 2.85
939 999 3.809832 CGGCTCTGTTTTGAGAAGAAGAA 59.190 43.478 0.00 0.00 36.23 2.52
940 1000 3.069586 TCGGCTCTGTTTTGAGAAGAAGA 59.930 43.478 0.00 0.00 36.23 2.87
941 1001 3.393800 TCGGCTCTGTTTTGAGAAGAAG 58.606 45.455 0.00 0.00 36.23 2.85
942 1002 3.393800 CTCGGCTCTGTTTTGAGAAGAA 58.606 45.455 0.00 0.00 36.23 2.52
943 1003 2.868044 GCTCGGCTCTGTTTTGAGAAGA 60.868 50.000 0.00 0.00 36.23 2.87
944 1004 1.462670 GCTCGGCTCTGTTTTGAGAAG 59.537 52.381 0.00 0.00 36.23 2.85
945 1005 1.202639 TGCTCGGCTCTGTTTTGAGAA 60.203 47.619 0.00 0.00 36.23 2.87
946 1006 0.392706 TGCTCGGCTCTGTTTTGAGA 59.607 50.000 0.00 0.00 36.23 3.27
959 1019 1.069636 GTTCAAAACTGCTCTGCTCGG 60.070 52.381 0.00 0.00 0.00 4.63
974 1035 0.320858 TAGAATGCGGTGCGGTTCAA 60.321 50.000 8.68 0.00 31.43 2.69
984 1045 7.019418 GGTTACAAACTTAACTTAGAATGCGG 58.981 38.462 0.00 0.00 33.21 5.69
986 1047 7.743400 GTCGGTTACAAACTTAACTTAGAATGC 59.257 37.037 0.00 0.00 33.21 3.56
987 1048 7.948363 CGTCGGTTACAAACTTAACTTAGAATG 59.052 37.037 0.00 0.00 33.21 2.67
988 1049 7.359514 GCGTCGGTTACAAACTTAACTTAGAAT 60.360 37.037 0.00 0.00 33.21 2.40
989 1050 6.074356 GCGTCGGTTACAAACTTAACTTAGAA 60.074 38.462 0.00 0.00 33.21 2.10
991 1052 5.602516 GCGTCGGTTACAAACTTAACTTAG 58.397 41.667 0.00 0.00 33.21 2.18
992 1053 4.148000 CGCGTCGGTTACAAACTTAACTTA 59.852 41.667 0.00 0.00 33.21 2.24
993 1054 3.060339 CGCGTCGGTTACAAACTTAACTT 60.060 43.478 0.00 0.00 33.21 2.66
995 1056 2.814607 CGCGTCGGTTACAAACTTAAC 58.185 47.619 0.00 0.00 0.00 2.01
996 1057 1.192090 GCGCGTCGGTTACAAACTTAA 59.808 47.619 8.43 0.00 0.00 1.85
998 1059 1.566077 GCGCGTCGGTTACAAACTT 59.434 52.632 8.43 0.00 0.00 2.66
999 1060 2.312436 GGCGCGTCGGTTACAAACT 61.312 57.895 8.43 0.00 0.00 2.66
1052 1128 2.279784 GATCCTTCCTGGCGCTCG 60.280 66.667 7.64 0.00 35.26 5.03
1065 1141 2.421739 CCATGGTCGGTCGGATCC 59.578 66.667 2.57 0.00 0.00 3.36
1066 1142 2.280186 GCCATGGTCGGTCGGATC 60.280 66.667 14.67 0.00 0.00 3.36
1067 1143 3.861797 GGCCATGGTCGGTCGGAT 61.862 66.667 14.67 0.00 0.00 4.18
1071 1151 2.876368 CTTGGAGGCCATGGTCGGTC 62.876 65.000 14.67 5.22 31.53 4.79
1085 1165 1.901948 ACTCGCACTCGGTCTTGGA 60.902 57.895 0.00 0.00 36.13 3.53
1088 1168 2.049063 GCACTCGCACTCGGTCTT 60.049 61.111 0.00 0.00 38.36 3.01
1089 1169 4.406173 CGCACTCGCACTCGGTCT 62.406 66.667 0.00 0.00 38.40 3.85
1090 1170 4.400109 TCGCACTCGCACTCGGTC 62.400 66.667 0.00 0.00 38.40 4.79
1091 1171 4.406173 CTCGCACTCGCACTCGGT 62.406 66.667 0.00 0.00 38.40 4.69
1092 1172 4.406173 ACTCGCACTCGCACTCGG 62.406 66.667 0.00 0.00 38.40 4.63
1093 1173 3.168604 CACTCGCACTCGCACTCG 61.169 66.667 0.00 0.00 38.40 4.18
1099 1179 3.168604 CACTCGCACTCGCACTCG 61.169 66.667 0.00 0.00 38.40 4.18
1100 1180 3.474034 GCACTCGCACTCGCACTC 61.474 66.667 0.00 0.00 38.40 3.51
1206 1340 2.041405 CCACCTCCTCCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
1207 1341 1.075600 CTCCACCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1208 1342 1.075600 CCTCCACCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
1209 1343 1.547755 TCCTCCACCTCCTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
1210 1344 1.382009 GTCCTCCACCTCCTCCTCC 60.382 68.421 0.00 0.00 0.00 4.30
1211 1345 0.031616 ATGTCCTCCACCTCCTCCTC 60.032 60.000 0.00 0.00 0.00 3.71
1212 1346 0.326048 CATGTCCTCCACCTCCTCCT 60.326 60.000 0.00 0.00 0.00 3.69
1213 1347 1.341156 CCATGTCCTCCACCTCCTCC 61.341 65.000 0.00 0.00 0.00 4.30
1214 1348 0.618968 ACCATGTCCTCCACCTCCTC 60.619 60.000 0.00 0.00 0.00 3.71
1215 1349 0.618968 GACCATGTCCTCCACCTCCT 60.619 60.000 0.00 0.00 0.00 3.69
1216 1350 0.909610 TGACCATGTCCTCCACCTCC 60.910 60.000 0.00 0.00 0.00 4.30
1217 1351 0.250513 GTGACCATGTCCTCCACCTC 59.749 60.000 0.00 0.00 0.00 3.85
1218 1352 1.201429 GGTGACCATGTCCTCCACCT 61.201 60.000 0.00 0.00 42.82 4.00
1219 1353 1.299976 GGTGACCATGTCCTCCACC 59.700 63.158 0.00 0.00 40.20 4.61
1220 1354 0.620556 ATGGTGACCATGTCCTCCAC 59.379 55.000 17.79 0.00 43.39 4.02
1221 1355 3.103236 ATGGTGACCATGTCCTCCA 57.897 52.632 17.79 9.49 43.39 3.86
1229 1363 1.559682 GAGGGTACACATGGTGACCAT 59.440 52.381 12.20 12.20 46.37 3.55
1230 1364 0.981183 GAGGGTACACATGGTGACCA 59.019 55.000 6.84 6.84 36.33 4.02
1231 1365 0.252197 GGAGGGTACACATGGTGACC 59.748 60.000 0.00 0.00 36.96 4.02
1232 1366 0.252197 GGGAGGGTACACATGGTGAC 59.748 60.000 0.00 0.00 36.96 3.67
1233 1367 0.912487 GGGGAGGGTACACATGGTGA 60.912 60.000 0.00 0.00 36.96 4.02
1234 1368 0.914417 AGGGGAGGGTACACATGGTG 60.914 60.000 0.00 0.00 39.75 4.17
1235 1369 0.620700 GAGGGGAGGGTACACATGGT 60.621 60.000 0.00 0.00 0.00 3.55
1236 1370 1.345715 GGAGGGGAGGGTACACATGG 61.346 65.000 0.00 0.00 0.00 3.66
1237 1371 0.620410 TGGAGGGGAGGGTACACATG 60.620 60.000 0.00 0.00 0.00 3.21
1238 1372 0.620700 GTGGAGGGGAGGGTACACAT 60.621 60.000 0.00 0.00 0.00 3.21
1239 1373 1.229400 GTGGAGGGGAGGGTACACA 60.229 63.158 0.00 0.00 0.00 3.72
1240 1374 2.356780 CGTGGAGGGGAGGGTACAC 61.357 68.421 0.00 0.00 0.00 2.90
1241 1375 2.038329 CGTGGAGGGGAGGGTACA 59.962 66.667 0.00 0.00 0.00 2.90
1242 1376 3.468140 GCGTGGAGGGGAGGGTAC 61.468 72.222 0.00 0.00 0.00 3.34
1243 1377 4.791069 GGCGTGGAGGGGAGGGTA 62.791 72.222 0.00 0.00 0.00 3.69
1246 1380 3.787001 GAAGGCGTGGAGGGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
1247 1381 3.787001 GGAAGGCGTGGAGGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
1251 1385 3.952628 GAACGGGAAGGCGTGGAGG 62.953 68.421 0.00 0.00 0.00 4.30
1252 1386 2.434359 GAACGGGAAGGCGTGGAG 60.434 66.667 0.00 0.00 0.00 3.86
1253 1387 4.367023 CGAACGGGAAGGCGTGGA 62.367 66.667 0.00 0.00 0.00 4.02
1283 1417 2.692741 GAAGGGGTCTGGGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
1284 1418 2.692741 GGAAGGGGTCTGGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
1285 1419 3.216371 AGGAAGGGGTCTGGGGGA 61.216 66.667 0.00 0.00 0.00 4.81
1286 1420 3.017581 CAGGAAGGGGTCTGGGGG 61.018 72.222 0.00 0.00 0.00 5.40
1287 1421 3.017581 CCAGGAAGGGGTCTGGGG 61.018 72.222 0.00 0.00 44.99 4.96
1307 1441 3.164011 CTCGTCGTTGTCGTCGGC 61.164 66.667 7.27 0.00 45.17 5.54
1308 1442 2.501222 CCTCGTCGTTGTCGTCGG 60.501 66.667 7.27 0.23 45.17 4.79
1309 1443 1.509370 CTCCTCGTCGTTGTCGTCG 60.509 63.158 0.00 1.62 46.06 5.12
1310 1444 1.154263 CCTCCTCGTCGTTGTCGTC 60.154 63.158 0.00 0.00 38.33 4.20
1311 1445 1.849976 GACCTCCTCGTCGTTGTCGT 61.850 60.000 0.00 0.00 38.33 4.34
1312 1446 1.154263 GACCTCCTCGTCGTTGTCG 60.154 63.158 0.00 0.00 38.55 4.35
1313 1447 0.597072 AAGACCTCCTCGTCGTTGTC 59.403 55.000 0.00 0.00 37.85 3.18
1314 1448 0.314302 CAAGACCTCCTCGTCGTTGT 59.686 55.000 0.00 0.00 37.85 3.32
1315 1449 0.314302 ACAAGACCTCCTCGTCGTTG 59.686 55.000 0.00 0.00 37.85 4.10
1316 1450 0.597072 GACAAGACCTCCTCGTCGTT 59.403 55.000 0.00 0.00 37.85 3.85
1317 1451 1.242665 GGACAAGACCTCCTCGTCGT 61.243 60.000 0.00 0.00 37.85 4.34
1318 1452 1.507174 GGACAAGACCTCCTCGTCG 59.493 63.158 0.00 0.00 37.85 5.12
1319 1453 0.959372 TCGGACAAGACCTCCTCGTC 60.959 60.000 0.00 0.00 0.00 4.20
1320 1454 0.323542 ATCGGACAAGACCTCCTCGT 60.324 55.000 0.00 0.00 0.00 4.18
1321 1455 0.382515 GATCGGACAAGACCTCCTCG 59.617 60.000 0.00 0.00 0.00 4.63
1322 1456 1.679153 GAGATCGGACAAGACCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
1323 1457 1.686741 GGAGATCGGACAAGACCTCCT 60.687 57.143 0.25 0.00 37.71 3.69
1324 1458 0.747852 GGAGATCGGACAAGACCTCC 59.252 60.000 0.00 0.00 34.21 4.30
1325 1459 0.747852 GGGAGATCGGACAAGACCTC 59.252 60.000 0.00 0.00 0.00 3.85
1326 1460 0.688087 GGGGAGATCGGACAAGACCT 60.688 60.000 0.00 0.00 0.00 3.85
1327 1461 1.687297 GGGGGAGATCGGACAAGACC 61.687 65.000 0.00 0.00 0.00 3.85
1328 1462 0.976073 TGGGGGAGATCGGACAAGAC 60.976 60.000 0.00 0.00 0.00 3.01
1329 1463 0.687757 CTGGGGGAGATCGGACAAGA 60.688 60.000 0.00 0.00 0.00 3.02
1330 1464 1.826024 CTGGGGGAGATCGGACAAG 59.174 63.158 0.00 0.00 0.00 3.16
1331 1465 2.367202 GCTGGGGGAGATCGGACAA 61.367 63.158 0.00 0.00 0.00 3.18
1332 1466 2.764128 GCTGGGGGAGATCGGACA 60.764 66.667 0.00 0.00 0.00 4.02
1333 1467 2.764128 TGCTGGGGGAGATCGGAC 60.764 66.667 0.00 0.00 0.00 4.79
1334 1468 2.444706 CTGCTGGGGGAGATCGGA 60.445 66.667 0.00 0.00 32.36 4.55
1335 1469 4.247380 GCTGCTGGGGGAGATCGG 62.247 72.222 0.00 0.00 32.36 4.18
1336 1470 3.457625 CTGCTGCTGGGGGAGATCG 62.458 68.421 0.00 0.00 32.36 3.69
1337 1471 2.509916 CTGCTGCTGGGGGAGATC 59.490 66.667 0.00 0.00 32.36 2.75
1338 1472 3.806667 GCTGCTGCTGGGGGAGAT 61.807 66.667 8.53 0.00 36.03 2.75
1340 1474 4.798344 CTGCTGCTGCTGGGGGAG 62.798 72.222 17.00 0.57 40.48 4.30
1349 1483 3.128188 CTCCTGCTGCTGCTGCTG 61.128 66.667 27.67 25.97 40.48 4.41
1350 1484 4.411981 CCTCCTGCTGCTGCTGCT 62.412 66.667 27.67 0.00 40.48 4.24
1351 1485 4.405671 TCCTCCTGCTGCTGCTGC 62.406 66.667 22.51 22.51 40.48 5.25
1352 1486 2.125065 CTCCTCCTGCTGCTGCTG 60.125 66.667 17.00 15.58 40.48 4.41
1353 1487 3.400928 CCTCCTCCTGCTGCTGCT 61.401 66.667 17.00 0.00 40.48 4.24
1354 1488 3.388703 CTCCTCCTCCTGCTGCTGC 62.389 68.421 8.89 8.89 40.20 5.25
1355 1489 2.733669 CCTCCTCCTCCTGCTGCTG 61.734 68.421 0.00 0.00 0.00 4.41
1356 1490 2.365370 CCTCCTCCTCCTGCTGCT 60.365 66.667 0.00 0.00 0.00 4.24
1357 1491 2.364842 TCCTCCTCCTCCTGCTGC 60.365 66.667 0.00 0.00 0.00 5.25
1358 1492 1.761667 CCTCCTCCTCCTCCTGCTG 60.762 68.421 0.00 0.00 0.00 4.41
1359 1493 1.938596 TCCTCCTCCTCCTCCTGCT 60.939 63.158 0.00 0.00 0.00 4.24
1360 1494 1.760480 GTCCTCCTCCTCCTCCTGC 60.760 68.421 0.00 0.00 0.00 4.85
1361 1495 1.454847 CGTCCTCCTCCTCCTCCTG 60.455 68.421 0.00 0.00 0.00 3.86
1362 1496 3.011885 CGTCCTCCTCCTCCTCCT 58.988 66.667 0.00 0.00 0.00 3.69
1363 1497 2.835895 GCGTCCTCCTCCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
1364 1498 2.835895 GGCGTCCTCCTCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
1365 1499 4.824515 CGGCGTCCTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
1367 1501 3.519930 GACGGCGTCCTCCTCCTC 61.520 72.222 28.72 0.73 0.00 3.71
1439 1573 3.330720 AGGTTGCGGGGAAGGAGG 61.331 66.667 0.00 0.00 0.00 4.30
1440 1574 2.269241 GAGGTTGCGGGGAAGGAG 59.731 66.667 0.00 0.00 0.00 3.69
1480 1614 1.557269 CCCTGACCCTGACCTTCCTG 61.557 65.000 0.00 0.00 0.00 3.86
1545 1679 2.670934 GTGGCTGTGGCTCCACTG 60.671 66.667 18.72 18.39 46.90 3.66
1548 1682 4.648626 GCTGTGGCTGTGGCTCCA 62.649 66.667 0.00 0.00 38.73 3.86
1550 1684 4.648626 TGGCTGTGGCTGTGGCTC 62.649 66.667 0.00 0.00 38.73 4.70
1551 1685 4.655647 CTGGCTGTGGCTGTGGCT 62.656 66.667 0.00 0.00 38.73 4.75
1556 1690 4.980702 TTGGGCTGGCTGTGGCTG 62.981 66.667 0.00 0.00 38.73 4.85
1557 1691 4.982701 GTTGGGCTGGCTGTGGCT 62.983 66.667 0.00 0.00 38.73 4.75
1560 1694 4.641645 TCGGTTGGGCTGGCTGTG 62.642 66.667 0.00 0.00 0.00 3.66
1561 1695 4.643387 GTCGGTTGGGCTGGCTGT 62.643 66.667 0.00 0.00 0.00 4.40
1562 1696 4.641645 TGTCGGTTGGGCTGGCTG 62.642 66.667 0.00 0.00 0.00 4.85
1563 1697 4.335647 CTGTCGGTTGGGCTGGCT 62.336 66.667 0.00 0.00 0.00 4.75
1592 1726 4.816984 ATGGGGCTGCTGCTCTGC 62.817 66.667 15.64 0.00 40.19 4.26
1598 1732 4.889112 ATCCGCATGGGGCTGCTG 62.889 66.667 23.55 0.00 40.06 4.41
1673 1813 4.719106 GCTGCTGCTCCTGGCTGT 62.719 66.667 8.53 0.00 42.39 4.40
1674 1814 4.717313 TGCTGCTGCTCCTGGCTG 62.717 66.667 17.00 0.00 42.39 4.85
1675 1815 4.411981 CTGCTGCTGCTCCTGGCT 62.412 66.667 17.00 0.00 42.39 4.75
1677 1817 4.717313 TGCTGCTGCTGCTCCTGG 62.717 66.667 27.67 0.00 40.48 4.45
1772 1930 1.245732 GGCATCCATCCTCATTGCTC 58.754 55.000 0.00 0.00 33.86 4.26
1821 1979 1.278537 TGTCAGTGCATCCATCTCCA 58.721 50.000 0.00 0.00 0.00 3.86
1828 1986 2.479566 TCCTTCTTGTCAGTGCATCC 57.520 50.000 0.00 0.00 0.00 3.51
1829 1987 3.058639 GTGTTCCTTCTTGTCAGTGCATC 60.059 47.826 0.00 0.00 0.00 3.91
1831 1989 2.288666 GTGTTCCTTCTTGTCAGTGCA 58.711 47.619 0.00 0.00 0.00 4.57
1832 1990 1.604278 GGTGTTCCTTCTTGTCAGTGC 59.396 52.381 0.00 0.00 0.00 4.40
1833 1991 2.874701 CAGGTGTTCCTTCTTGTCAGTG 59.125 50.000 0.00 0.00 43.07 3.66
1835 1993 1.876156 GCAGGTGTTCCTTCTTGTCAG 59.124 52.381 0.00 0.00 43.07 3.51
1836 1994 1.490490 AGCAGGTGTTCCTTCTTGTCA 59.510 47.619 0.00 0.00 43.07 3.58
1882 2068 5.489792 TCCAATCTAATCCTAGGCATGAC 57.510 43.478 2.96 0.00 0.00 3.06
1883 2069 6.708885 AATCCAATCTAATCCTAGGCATGA 57.291 37.500 2.96 0.00 0.00 3.07
1884 2070 7.855375 TCTAATCCAATCTAATCCTAGGCATG 58.145 38.462 2.96 0.00 0.00 4.06
1885 2071 8.635647 ATCTAATCCAATCTAATCCTAGGCAT 57.364 34.615 2.96 0.00 0.00 4.40
1900 2086 9.547753 GAGTTGCTGTAATCTAATCTAATCCAA 57.452 33.333 0.00 0.00 0.00 3.53
1910 2104 4.082190 AGCGTCTGAGTTGCTGTAATCTAA 60.082 41.667 0.75 0.00 37.62 2.10
1919 2113 0.965439 AAGAGAGCGTCTGAGTTGCT 59.035 50.000 1.14 1.14 42.73 3.91
1934 2128 5.762218 AGAAAACAGACATGGAAGACAAGAG 59.238 40.000 0.00 0.00 0.00 2.85
1935 2129 5.684704 AGAAAACAGACATGGAAGACAAGA 58.315 37.500 0.00 0.00 0.00 3.02
1937 2131 5.299279 GGAAGAAAACAGACATGGAAGACAA 59.701 40.000 0.00 0.00 0.00 3.18
1938 2132 4.821805 GGAAGAAAACAGACATGGAAGACA 59.178 41.667 0.00 0.00 0.00 3.41
1939 2133 5.066593 AGGAAGAAAACAGACATGGAAGAC 58.933 41.667 0.00 0.00 0.00 3.01
1940 2134 5.310409 AGGAAGAAAACAGACATGGAAGA 57.690 39.130 0.00 0.00 0.00 2.87
1941 2135 7.510549 TTTAGGAAGAAAACAGACATGGAAG 57.489 36.000 0.00 0.00 0.00 3.46
1942 2136 7.889873 TTTTAGGAAGAAAACAGACATGGAA 57.110 32.000 0.00 0.00 0.00 3.53
1943 2137 7.176690 GGATTTTAGGAAGAAAACAGACATGGA 59.823 37.037 0.00 0.00 31.35 3.41
1992 2190 3.201487 TGGGACGGAGAGAGAGTACATTA 59.799 47.826 0.00 0.00 0.00 1.90
2007 2774 4.638421 ACAACATGTTACATTATGGGACGG 59.362 41.667 11.53 0.00 0.00 4.79
2008 2775 5.811399 ACAACATGTTACATTATGGGACG 57.189 39.130 11.53 0.00 0.00 4.79
2009 2776 7.540745 GTGAAACAACATGTTACATTATGGGAC 59.459 37.037 11.53 0.00 40.14 4.46
2010 2777 7.598278 GTGAAACAACATGTTACATTATGGGA 58.402 34.615 11.53 0.00 40.14 4.37
2011 2778 7.810766 GTGAAACAACATGTTACATTATGGG 57.189 36.000 11.53 0.00 40.14 4.00
2030 2797 7.467267 GCATTTGTCTGAAGAAGTAGTGTGAAA 60.467 37.037 0.00 0.00 0.00 2.69
2031 2798 6.017934 GCATTTGTCTGAAGAAGTAGTGTGAA 60.018 38.462 0.00 0.00 0.00 3.18
2032 2799 5.466728 GCATTTGTCTGAAGAAGTAGTGTGA 59.533 40.000 0.00 0.00 0.00 3.58
2040 2853 7.172190 TGAAGAAGTAGCATTTGTCTGAAGAAG 59.828 37.037 0.00 0.00 0.00 2.85
2043 2856 6.620303 GCTGAAGAAGTAGCATTTGTCTGAAG 60.620 42.308 0.00 0.00 39.67 3.02
2046 2859 4.453478 TGCTGAAGAAGTAGCATTTGTCTG 59.547 41.667 0.00 0.00 44.36 3.51
2047 2860 4.645535 TGCTGAAGAAGTAGCATTTGTCT 58.354 39.130 0.00 0.00 44.36 3.41
2088 2918 1.113788 GCTCCCATTATTGCCTGCAA 58.886 50.000 7.06 7.06 40.47 4.08
2090 2920 1.656441 CGCTCCCATTATTGCCTGC 59.344 57.895 0.00 0.00 0.00 4.85
2093 2923 2.200373 ATACCGCTCCCATTATTGCC 57.800 50.000 0.00 0.00 0.00 4.52
2095 2925 5.291128 GTCGAATATACCGCTCCCATTATTG 59.709 44.000 0.00 0.00 0.00 1.90
2097 2927 4.142004 GGTCGAATATACCGCTCCCATTAT 60.142 45.833 0.00 0.00 0.00 1.28
2099 2929 2.028385 GGTCGAATATACCGCTCCCATT 60.028 50.000 0.00 0.00 0.00 3.16
2217 3672 0.669318 GGCAGTGTTGATTCGACCGA 60.669 55.000 1.54 0.00 0.00 4.69
2226 3681 0.888619 CCTAGTCGAGGCAGTGTTGA 59.111 55.000 0.00 0.00 38.96 3.18
2244 3699 0.172578 GTATTGCACGGGCCTTTTCC 59.827 55.000 7.46 0.00 40.13 3.13
2266 3721 4.525949 GGAGGCTACGCGGGGTTC 62.526 72.222 12.47 0.87 0.00 3.62
2442 3897 3.451556 ATCTGGAGGCACATCGCGG 62.452 63.158 6.13 0.00 43.84 6.46
2443 3898 1.953138 GATCTGGAGGCACATCGCG 60.953 63.158 0.00 0.00 43.84 5.87
2448 3903 1.219124 GCGAAGATCTGGAGGCACA 59.781 57.895 0.00 0.00 0.00 4.57
2456 3911 2.202610 TGCCGACGCGAAGATCTG 60.203 61.111 15.93 0.00 38.08 2.90
2479 3934 3.842923 AGCTCCATGCCTCCGTCG 61.843 66.667 0.00 0.00 44.23 5.12
2480 3935 2.202987 CAGCTCCATGCCTCCGTC 60.203 66.667 0.00 0.00 44.23 4.79
2481 3936 4.479993 GCAGCTCCATGCCTCCGT 62.480 66.667 0.00 0.00 44.23 4.69
2506 3961 1.705997 AAGGTCCTTTCCACGGCACT 61.706 55.000 0.00 0.00 0.00 4.40
2557 4012 1.083806 AACGACATCGATGCACGCAT 61.084 50.000 30.92 22.42 43.02 4.73
2558 4013 1.288419 AAACGACATCGATGCACGCA 61.288 50.000 30.92 0.00 43.02 5.24
2565 4020 1.024579 GGCACCCAAACGACATCGAT 61.025 55.000 8.54 0.00 43.02 3.59
2566 4021 1.669760 GGCACCCAAACGACATCGA 60.670 57.895 8.54 0.00 43.02 3.59
2805 4262 0.321653 ATCTGACAAACCACCTCCGC 60.322 55.000 0.00 0.00 0.00 5.54
2817 4274 2.745308 CCGGCCATCCCATCTGACA 61.745 63.158 2.24 0.00 0.00 3.58
2837 4294 1.547372 CTCAACCATCCAAAGCCAAGG 59.453 52.381 0.00 0.00 0.00 3.61
2906 4363 2.609183 ATACGACGTCTGAAGGCGCC 62.609 60.000 21.89 21.89 0.00 6.53
2936 4393 0.807496 GAGGACTGCACATCAAAGCC 59.193 55.000 0.00 0.00 0.00 4.35
2951 4408 2.774234 GTGATGGAAAGGAGGATGAGGA 59.226 50.000 0.00 0.00 0.00 3.71
2959 4416 0.807667 CGGAGCGTGATGGAAAGGAG 60.808 60.000 0.00 0.00 0.00 3.69
2960 4417 1.218047 CGGAGCGTGATGGAAAGGA 59.782 57.895 0.00 0.00 0.00 3.36
2961 4418 1.815421 CCGGAGCGTGATGGAAAGG 60.815 63.158 0.00 0.00 0.00 3.11
2962 4419 1.815421 CCCGGAGCGTGATGGAAAG 60.815 63.158 0.73 0.00 0.00 2.62
2963 4420 2.267642 CCCGGAGCGTGATGGAAA 59.732 61.111 0.73 0.00 0.00 3.13
2964 4421 3.781307 CCCCGGAGCGTGATGGAA 61.781 66.667 0.73 0.00 0.00 3.53
2967 4424 3.323758 TTTCCCCCGGAGCGTGATG 62.324 63.158 0.73 0.00 31.21 3.07
2968 4425 3.006728 TTTCCCCCGGAGCGTGAT 61.007 61.111 0.73 0.00 31.21 3.06
2969 4426 4.011517 GTTTCCCCCGGAGCGTGA 62.012 66.667 0.73 0.00 31.21 4.35
2979 4436 4.147593 AAGACCAGATCTAGGGTTTCCCC 61.148 52.174 6.21 0.00 44.40 4.81
2980 4437 2.765502 AGACCAGATCTAGGGTTTCCC 58.234 52.381 6.21 0.00 45.90 3.97
2981 4438 4.034410 AGAAGACCAGATCTAGGGTTTCC 58.966 47.826 6.21 0.07 36.27 3.13
2982 4439 4.141824 CCAGAAGACCAGATCTAGGGTTTC 60.142 50.000 6.21 10.78 36.27 2.78
2983 4440 3.777522 CCAGAAGACCAGATCTAGGGTTT 59.222 47.826 6.21 0.00 36.27 3.27
2984 4441 3.012959 TCCAGAAGACCAGATCTAGGGTT 59.987 47.826 6.21 4.16 36.27 4.11
2985 4442 2.587777 TCCAGAAGACCAGATCTAGGGT 59.412 50.000 4.43 4.43 36.27 4.34
2986 4443 3.320610 TCCAGAAGACCAGATCTAGGG 57.679 52.381 13.60 6.81 36.27 3.53
2987 4444 3.505680 CGATCCAGAAGACCAGATCTAGG 59.494 52.174 0.00 2.07 36.27 3.02
2988 4445 3.505680 CCGATCCAGAAGACCAGATCTAG 59.494 52.174 0.00 0.00 36.27 2.43
2989 4446 3.138468 TCCGATCCAGAAGACCAGATCTA 59.862 47.826 0.00 0.00 36.27 1.98
2990 4447 2.091610 TCCGATCCAGAAGACCAGATCT 60.092 50.000 0.00 0.00 40.46 2.75
2991 4448 2.035321 GTCCGATCCAGAAGACCAGATC 59.965 54.545 0.00 0.00 33.34 2.75
2992 4449 2.035632 GTCCGATCCAGAAGACCAGAT 58.964 52.381 0.00 0.00 0.00 2.90
2993 4450 1.272480 TGTCCGATCCAGAAGACCAGA 60.272 52.381 0.00 0.00 0.00 3.86
2994 4451 1.135915 CTGTCCGATCCAGAAGACCAG 59.864 57.143 0.00 0.00 31.38 4.00
2995 4452 1.186200 CTGTCCGATCCAGAAGACCA 58.814 55.000 0.00 0.00 31.38 4.02
2996 4453 1.134965 CACTGTCCGATCCAGAAGACC 60.135 57.143 4.68 0.00 34.04 3.85
2997 4454 1.819288 TCACTGTCCGATCCAGAAGAC 59.181 52.381 4.68 0.00 34.04 3.01
2998 4455 2.215942 TCACTGTCCGATCCAGAAGA 57.784 50.000 4.68 0.56 34.04 2.87
2999 4456 2.428530 TCATCACTGTCCGATCCAGAAG 59.571 50.000 4.68 0.00 34.04 2.85
3000 4457 2.456577 TCATCACTGTCCGATCCAGAA 58.543 47.619 4.68 0.00 34.04 3.02
3001 4458 2.143876 TCATCACTGTCCGATCCAGA 57.856 50.000 4.68 0.00 34.04 3.86
3002 4459 2.819115 CTTCATCACTGTCCGATCCAG 58.181 52.381 0.00 0.00 36.01 3.86
3003 4460 1.134699 GCTTCATCACTGTCCGATCCA 60.135 52.381 0.00 0.00 0.00 3.41
3004 4461 1.137872 AGCTTCATCACTGTCCGATCC 59.862 52.381 0.00 0.00 0.00 3.36
3005 4462 2.593346 AGCTTCATCACTGTCCGATC 57.407 50.000 0.00 0.00 0.00 3.69
3006 4463 3.701542 TCTAAGCTTCATCACTGTCCGAT 59.298 43.478 0.00 0.00 0.00 4.18
3007 4464 3.089284 TCTAAGCTTCATCACTGTCCGA 58.911 45.455 0.00 0.00 0.00 4.55
3008 4465 3.443037 CTCTAAGCTTCATCACTGTCCG 58.557 50.000 0.00 0.00 0.00 4.79
3009 4466 3.194062 GCTCTAAGCTTCATCACTGTCC 58.806 50.000 0.00 0.00 38.45 4.02
3019 4476 6.243587 CCTCAAGAGGGAGCTCTAAGCTTC 62.244 54.167 14.64 0.29 46.67 3.86
3020 4477 4.450311 CCTCAAGAGGGAGCTCTAAGCTT 61.450 52.174 14.64 3.48 46.67 3.74
3022 4479 1.412343 CCTCAAGAGGGAGCTCTAAGC 59.588 57.143 14.64 1.04 44.87 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.